Query 027840
Match_columns 218
No_of_seqs 187 out of 1244
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 16:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00026 aquaporin NIP; Provi 100.0 5.9E-49 1.3E-53 348.6 19.4 211 1-216 1-213 (298)
2 PLN00184 aquaporin NIP1; Provi 100.0 1.1E-31 2.3E-36 238.5 17.2 148 69-216 49-204 (296)
3 KOG0223 Aquaporin (major intri 100.0 3.9E-31 8.4E-36 228.0 12.7 150 68-217 5-159 (238)
4 PLN00182 putative aquaporin NI 100.0 7.9E-30 1.7E-34 225.3 17.3 147 70-216 38-185 (283)
5 COG0580 GlpF Glycerol uptake f 100.0 3E-30 6.5E-35 222.4 13.1 144 72-215 3-161 (241)
6 KOG0224 Aquaporin (major intri 100.0 4.7E-30 1E-34 224.8 8.4 147 70-217 28-194 (316)
7 PF00230 MIP: Major intrinsic 100.0 6.3E-29 1.4E-33 212.1 14.0 148 70-217 4-162 (227)
8 PTZ00016 aquaglyceroporin; Pro 100.0 1.2E-28 2.7E-33 219.0 16.0 147 69-216 45-209 (294)
9 PLN00183 putative aquaporin NI 100.0 9.7E-28 2.1E-32 211.2 15.9 153 63-215 34-186 (274)
10 PRK05420 aquaporin Z; Provisio 100.0 1.3E-27 2.8E-32 205.9 15.5 142 74-216 2-157 (231)
11 PLN00167 aquaporin TIP5; Provi 99.9 6.5E-27 1.4E-31 204.3 16.9 149 67-216 15-169 (256)
12 PLN00027 aquaporin TIP; Provis 99.9 7.5E-27 1.6E-31 203.5 16.6 146 71-216 17-168 (252)
13 PLN00166 aquaporin TIP2; Provi 99.9 7.6E-27 1.6E-31 203.3 16.0 147 70-216 14-166 (250)
14 cd00333 MIP Major intrinsic pr 99.9 2.2E-25 4.7E-30 191.2 13.7 141 75-215 1-155 (228)
15 TIGR00861 MIP MIP family chann 99.9 2.2E-24 4.8E-29 183.6 13.4 135 79-213 1-145 (216)
16 cd00333 MIP Major intrinsic pr 99.8 4.4E-18 9.6E-23 146.0 10.1 104 66-172 122-227 (228)
17 PLN00182 putative aquaporin NI 99.7 6.6E-18 1.4E-22 149.5 10.9 103 67-175 152-254 (283)
18 PLN00026 aquaporin NIP; Provi 99.7 1.1E-17 2.4E-22 148.9 9.9 103 69-177 182-284 (298)
19 PLN00183 putative aquaporin NI 99.7 3.4E-17 7.3E-22 144.4 10.2 106 68-179 155-260 (274)
20 TIGR00861 MIP MIP family chann 99.7 6.5E-17 1.4E-21 137.7 9.7 100 68-170 116-216 (216)
21 KOG0223 Aquaporin (major intri 99.7 3.1E-17 6.7E-22 141.8 6.7 107 64-177 122-228 (238)
22 PLN00184 aquaporin NIP1; Provi 99.7 5.3E-16 1.1E-20 138.2 10.8 103 69-177 173-275 (296)
23 PLN00027 aquaporin TIP; Provis 99.6 3.4E-15 7.3E-20 130.3 11.4 108 65-176 133-240 (252)
24 PTZ00016 aquaglyceroporin; Pro 99.6 3E-15 6.5E-20 133.3 11.2 109 65-177 175-292 (294)
25 PLN00166 aquaporin TIP2; Provi 99.6 4.5E-15 9.7E-20 129.5 11.5 104 69-176 135-238 (250)
26 COG0580 GlpF Glycerol uptake f 99.6 6.5E-15 1.4E-19 127.4 11.0 114 57-175 118-240 (241)
27 PRK05420 aquaporin Z; Provisio 99.6 6.7E-15 1.5E-19 126.9 10.7 101 70-176 128-229 (231)
28 PLN00167 aquaporin TIP5; Provi 99.5 2.6E-14 5.6E-19 125.1 10.1 104 70-178 140-243 (256)
29 PF00230 MIP: Major intrinsic 99.5 2.4E-14 5.2E-19 122.1 9.1 104 63-170 124-227 (227)
30 KOG0224 Aquaporin (major intri 99.1 3.8E-11 8.3E-16 106.1 5.2 111 61-175 153-275 (316)
31 COG2116 FocA Formate/nitrite f 70.1 80 0.0017 28.1 12.6 136 71-209 29-178 (265)
32 PF01226 Form_Nir_trans: Forma 39.7 2.5E+02 0.0055 24.3 11.5 101 108-210 58-171 (250)
33 PRK11562 nitrite transporter N 39.2 2.7E+02 0.006 24.6 13.8 98 110-209 61-170 (268)
34 PRK12446 undecaprenyldiphospho 34.4 11 0.00023 34.3 -0.6 22 124-145 6-27 (352)
35 PF03033 Glyco_transf_28: Glyc 32.8 16 0.00035 27.6 0.3 21 126-146 5-25 (139)
36 PF09512 ThiW: Thiamine-precur 24.0 3.3E+02 0.0072 22.2 6.4 26 149-174 123-148 (150)
37 KOG2533 Permease of the major 21.3 3.6E+02 0.0078 25.9 7.2 54 151-208 171-224 (495)
38 PF05564 Auxin_repressed: Dorm 20.6 79 0.0017 24.7 2.1 17 9-25 52-68 (119)
No 1
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=5.9e-49 Score=348.64 Aligned_cols=211 Identities=74% Similarity=1.203 Sum_probs=184.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCcccccccccccchhh--HhhhcCCCCcccccCCCCChhHHHHHH
Q 027840 1 MDHEDVPSAPSTPATPGTPGAPLFGGFRGDHRGTNGRKSLLKSCKCFSVEE--WAIEDGRLPSVSCSLPPPPVSLARKVG 78 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~ 78 (218)
||+|++|+.||+|+||||||+|||+|+|.|+.+ +++++.+++|+|+++++ |..++... ++.+.++.+++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~~l 75 (298)
T PLN00026 1 MDNEEVPSAPSTPATPGTPGGPLFGGFRVDSLS-YGDRKLLPSCKCFPVEALEWGRLPTCF----CDLPPPDVSLTRKLG 75 (298)
T ss_pred CCcccCCCCCCCCCCCCCCCCcccccccccccc-cccccccccccccccccccccccCccc----ccCCCCCchHHHHHH
Confidence 899999999999999999999999999999777 77888999999999884 55444322 344566778999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCCcCcchhhhhh
Q 027840 79 AEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGA 158 (218)
Q Consensus 79 aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~~~~~~~yiia 158 (218)
+||+|||+|+|+++++...+.+.++..+++.++++||+++++.+++++++||+|+|||||+++++.++++|.++|+||++
T Consensus 76 aEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~~~Yiia 155 (298)
T PLN00026 76 AEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYIAA 155 (298)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999999865544333333457778899999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhcCccCCccccCCccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027840 159 QIMASLCAAFALKGIFHPIMGGGVTVPSAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 159 Q~lGa~~ga~l~~~~~~~~~~~~~t~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
|++|+++|+++++.++++...++.+.|+.+.+|+|+.|+++||+|+++++++++|+|+
T Consensus 156 QilGAi~aa~~~~~~~~~~~~~g~t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~ 213 (298)
T PLN00026 156 QVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRA 213 (298)
T ss_pred HHHHHHHHHHHHHHHhcccccCceeeecccHHHHHHHHHHHHHHHHHhheeeecCCCC
Confidence 9999999999999999876666678888899999999999999999999988777764
No 2
>PLN00184 aquaporin NIP1; Provisional
Probab=99.98 E-value=1.1e-31 Score=238.55 Aligned_cols=148 Identities=45% Similarity=0.672 Sum_probs=125.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCC
Q 027840 69 PPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFP 148 (218)
Q Consensus 69 ~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~ 148 (218)
.+.+++|++++||+|||+|+|+++++.......+...+++.++++||+++++.+++++++||+|+|||||+++++.++++
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~ 128 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFP 128 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCC
Confidence 56688999999999999999999986543322222235678899999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHhcCccC---C-----ccccCCccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027840 149 WKHVPVYIGAQIMASLCAAFALKGIFHPIMG---G-----GVTVPSAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 149 ~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~---~-----~~t~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
|.++|+||++|++|+++|+++++.++..... + ..+.|..+.+++|+.|+++||+|++++++++.|+|+
T Consensus 129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~ 204 (296)
T PLN00184 129 LKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRA 204 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcC
Confidence 9999999999999999999999998853221 1 124466789999999999999999999998777664
No 3
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.9e-31 Score=228.04 Aligned_cols=150 Identities=41% Similarity=0.592 Sum_probs=133.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCC
Q 027840 68 PPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHF 147 (218)
Q Consensus 68 ~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~ 147 (218)
...++.+|++++||++|++++|+++++...+++.....+.+.+++++|+++++.++++|++||+|+|||||+++++.|++
T Consensus 5 ~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~i 84 (238)
T KOG0223|consen 5 LLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKI 84 (238)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCC
Confidence 34568899999999999999999999877777655556688999999999999999999999999999999999999999
Q ss_pred CcCcchhhhhhhhhhHHHHHHHHHHHhcCc---cCCcc--ccCCccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 027840 148 PWKHVPVYIGAQIMASLCAAFALKGIFHPI---MGGGV--TVPSAGYGEAFALEFIISFNLMFVVTAVATDTRAV 217 (218)
Q Consensus 148 ~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~---~~~~~--t~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~~ 217 (218)
++.++..||++|++|+++|+.+++.+.+.. ..... ..++.+.+|+++.|++.||+|+++++++++|+|+.
T Consensus 85 sl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~ 159 (238)
T KOG0223|consen 85 SLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS 159 (238)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence 999999999999999999999999988874 22222 23578999999999999999999999999999973
No 4
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.97 E-value=7.9e-30 Score=225.30 Aligned_cols=147 Identities=48% Similarity=0.754 Sum_probs=124.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCCc
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPW 149 (218)
Q Consensus 70 ~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~~ 149 (218)
..+++|++++||+|||+|+|+++++...........+.+.++++||+++++.+++++++||+|+|||||+++++.++++|
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~ 117 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPW 117 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCH
Confidence 46788999999999999999999865432211122346678889999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhhhHHHHHHHHHHHhcCccCC-ccccCCccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027840 150 KHVPVYIGAQIMASLCAAFALKGIFHPIMGG-GVTVPSAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 150 ~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~~-~~t~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
.+++.||++|++|+++|+++++.++.....+ ..+.|+.+.+++|+.|+++||+|++++++++.|+|+
T Consensus 118 ~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~ 185 (283)
T PLN00182 118 YQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRA 185 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheecccc
Confidence 9999999999999999999999988543222 235677889999999999999999999998767654
No 5
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3e-30 Score=222.38 Aligned_cols=144 Identities=38% Similarity=0.565 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcc--cc-CCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCC
Q 027840 72 SLARKVGAEFVGTLILIFAGTATAIVNQ--KT-QGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFP 148 (218)
Q Consensus 72 ~l~~~~~aEfiGTf~lvf~~~~~~~~~~--~~-~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~ 148 (218)
++.+++++||+||++|+++++++..... +. ....++..++++||+.|++.++++|++||+|+|||||+++++.|+++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 4678999999999999999998654332 21 23445778999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHhcCccC-----------CccccCC-ccHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 027840 149 WKHVPVYIGAQIMASLCAAFALKGIFHPIMG-----------GGVTVPS-AGYGEAFALEFIISFNLMFVVTAVATDTR 215 (218)
Q Consensus 149 ~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~-----------~~~t~p~-~s~~~~f~~E~i~Tf~L~~~il~va~d~r 215 (218)
|++++.||++|++|+++|+.+++.+|.+... -.+|.|+ .+..++|+.|+++||+|+++|+++.+|+|
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~ 161 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGN 161 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 9999999999999999999999988865321 1246675 47899999999999999999999877665
No 6
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.7e-30 Score=224.84 Aligned_cols=147 Identities=33% Similarity=0.545 Sum_probs=125.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhhccccC-CCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCC
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIVNQKTQ-GSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFP 148 (218)
Q Consensus 70 ~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~-~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~ 148 (218)
.+.+.|.+++||+||++|+++++++.....-++ ..+.++.+.++||+++++.+++.|.+||+|+|||||+++++.||++
T Consensus 28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p 107 (316)
T KOG0224|consen 28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLP 107 (316)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCC
Confidence 467899999999999999999998543222221 2234677889999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHhcCcc---CCc--------------cccC--CccHHHHHHHHHHHHHHHHHHHHH
Q 027840 149 WKHVPVYIGAQIMASLCAAFALKGIFHPIM---GGG--------------VTVP--SAGYGEAFALEFIISFNLMFVVTA 209 (218)
Q Consensus 149 ~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~---~~~--------------~t~p--~~s~~~~f~~E~i~Tf~L~~~il~ 209 (218)
|+++++|+++|++||++|++..|.+|.+.+ .++ +|+| ..+.+++|+.|+++|.+|+.++++
T Consensus 108 ~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l~a 187 (316)
T KOG0224|consen 108 WKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCLFA 187 (316)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhheeE
Confidence 999999999999999999999999987542 121 3556 468999999999999999999999
Q ss_pred hhcCCCCC
Q 027840 210 VATDTRAV 217 (218)
Q Consensus 210 va~d~r~~ 217 (218)
+ +|+|++
T Consensus 188 I-~D~rN~ 194 (316)
T KOG0224|consen 188 I-TDKRNP 194 (316)
T ss_pred E-ecCCCC
Confidence 7 899873
No 7
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.96 E-value=6.3e-29 Score=212.06 Aligned_cols=148 Identities=40% Similarity=0.567 Sum_probs=124.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhh-ccccCC-----CchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHH
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIV-NQKTQG-----SETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAA 143 (218)
Q Consensus 70 ~~~l~~~~~aEfiGTf~lvf~~~~~~~~-~~~~~~-----~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l 143 (218)
+.+++|++++||+||++++|+++++... ...... ..+...+++++|+.+++.++.++++||+|+|||||++.++
T Consensus 4 ~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l 83 (227)
T PF00230_consen 4 SPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFAL 83 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheee
Confidence 4578999999999999999999985442 222211 2357788999999999999999999999999999999999
Q ss_pred hcCCCcCcchhhhhhhhhhHHHHHHHHHHHhcCc---cCCcccc--CCccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 027840 144 LKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPI---MGGGVTV--PSAGYGEAFALEFIISFNLMFVVTAVATDTRAV 217 (218)
Q Consensus 144 ~g~~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~---~~~~~t~--p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~~ 217 (218)
.|+++|.+.+.|+++|++|+++|+++.+.++++. .....+. |+.+..++|+.|+++|++|++++++++.|+|+.
T Consensus 84 ~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~ 162 (227)
T PF00230_consen 84 TGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRKF 162 (227)
T ss_dssp TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSS
T ss_pred eeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhccccccc
Confidence 9999999999999999999999999999998874 1222323 467899999999999999999999998777764
No 8
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.96 E-value=1.2e-28 Score=218.96 Aligned_cols=147 Identities=31% Similarity=0.497 Sum_probs=122.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCC
Q 027840 69 PPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFP 148 (218)
Q Consensus 69 ~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~ 148 (218)
..++++|++++||+||++|+|+++++.......+...+.+.++++||+++++.+++++++||+|+|||||+++++.++++
T Consensus 45 ~~~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~ 124 (294)
T PTZ00016 45 EYRPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFP 124 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCC
Confidence 33678899999999999999999986543222121234667889999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHhcCccC--------------C----ccccCCccHHHHHHHHHHHHHHHHHHHHHh
Q 027840 149 WKHVPVYIGAQIMASLCAAFALKGIFHPIMG--------------G----GVTVPSAGYGEAFALEFIISFNLMFVVTAV 210 (218)
Q Consensus 149 ~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~--------------~----~~t~p~~s~~~~f~~E~i~Tf~L~~~il~v 210 (218)
|.+++.|+++|++|+++|++++|.+|++... . ..+.|+.+..++|+.|+++||+|+++|+++
T Consensus 125 ~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila~ 204 (294)
T PTZ00016 125 WKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILAI 204 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988764210 0 134567788999999999999999999997
Q ss_pred hcCCCC
Q 027840 211 ATDTRA 216 (218)
Q Consensus 211 a~d~r~ 216 (218)
+|+|+
T Consensus 205 -~d~~~ 209 (294)
T PTZ00016 205 -TDPNN 209 (294)
T ss_pred -ccCcc
Confidence 56654
No 9
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.95 E-value=9.7e-28 Score=211.21 Aligned_cols=153 Identities=39% Similarity=0.614 Sum_probs=127.4
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHH
Q 027840 63 SCSLPPPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFA 142 (218)
Q Consensus 63 ~~~~~~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~ 142 (218)
+|.....+.+.+|++++||+|||+++|++++.....+...+..+++.+++++|+++++.+++++++||+|+|||||++++
T Consensus 34 ~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~ 113 (274)
T PLN00183 34 GCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFA 113 (274)
T ss_pred cccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHH
Confidence 44444567788999999999999999999986544332222234667889999999999999999999999999999999
Q ss_pred HhcCCCcCcchhhhhhhhhhHHHHHHHHHHHhcCccCCccccCCccHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 027840 143 ALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTVPSAGYGEAFALEFIISFNLMFVVTAVATDTR 215 (218)
Q Consensus 143 l~g~~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~~~~t~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r 215 (218)
+.++++|.++|+||++|++|+++|+++++.++........+.|..+.+++++.|+++|++|+++++++..++|
T Consensus 114 l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~ 186 (274)
T PLN00183 114 TFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKADLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQ 186 (274)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHhhheeecccc
Confidence 9999999999999999999999999999988865333334557677899999999999999999999755543
No 10
>PRK05420 aquaporin Z; Provisional
Probab=99.95 E-value=1.3e-27 Score=205.92 Aligned_cols=142 Identities=32% Similarity=0.465 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccc-CCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCCcCcc
Q 027840 74 ARKVGAEFVGTLILIFAGTATAIVNQKT-QGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHV 152 (218)
Q Consensus 74 ~~~~~aEfiGTf~lvf~~~~~~~~~~~~-~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~~~~~ 152 (218)
+|++++||+||++|+|+++++....++. +...+.+.+++++|+++++.+++++++||+|+|||||+++++.|+++|.++
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 6899999999999999999865432221 112246778999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCcc--C--C--c------cccC-CccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027840 153 PVYIGAQIMASLCAAFALKGIFHPIM--G--G--G------VTVP-SAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 153 ~~yiiaQ~lGa~~ga~l~~~~~~~~~--~--~--~------~t~p-~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
+.||++|++|+++|+.+++.++.... . + . .+.| ..+..++|+.|+++||+|++++++. +|+|+
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~-~~~~~ 157 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGA-TDKRA 157 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence 99999999999999999888775321 0 0 0 1234 3478999999999999999999987 56654
No 11
>PLN00167 aquaporin TIP5; Provisional
Probab=99.95 E-value=6.5e-27 Score=204.29 Aligned_cols=149 Identities=26% Similarity=0.299 Sum_probs=121.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccc--c---CCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHH
Q 027840 67 PPPPVSLARKVGAEFVGTLILIFAGTATAIVNQK--T---QGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAF 141 (218)
Q Consensus 67 ~~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~--~---~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~ 141 (218)
+....+++|++++||+|||+|+|+++++....+. . ....+++.++++||+++++.+++++++||+|+|||||+++
T Consensus 15 ~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~ 94 (256)
T PLN00167 15 QSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGM 94 (256)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHH
Confidence 3345678999999999999999999986553221 1 1123477899999999999999999999999999999999
Q ss_pred HHhcCCCcCcchhhhhhhhhhHHHHHHHHHHHhcCccCCccc-cCCccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027840 142 AALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVT-VPSAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 142 ~l~g~~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~~~~t-~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
++.++++|.++|.|+++|++|+++|+++++.++......... .++.+.+++++.|+++|++|+++++++ +|+|+
T Consensus 95 ~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~-~~~~~ 169 (256)
T PLN00167 95 AVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYAA-GDPRR 169 (256)
T ss_pred HHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHHHh-ccccc
Confidence 999999999999999999999999999998886543211111 134577899999999999999999987 45543
No 12
>PLN00027 aquaporin TIP; Provisional
Probab=99.95 E-value=7.5e-27 Score=203.49 Aligned_cols=146 Identities=27% Similarity=0.351 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhc----cccC-CCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhc
Q 027840 71 VSLARKVGAEFVGTLILIFAGTATAIVN----QKTQ-GSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALK 145 (218)
Q Consensus 71 ~~l~~~~~aEfiGTf~lvf~~~~~~~~~----~~~~-~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g 145 (218)
.+.+|++++||+||++|+|+++++.... .+.+ ...+.+.+++++|+++++.+++++++||+|+|||||+++++.+
T Consensus 17 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g 96 (252)
T PLN00027 17 PDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGG 96 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhC
Confidence 4568999999999999999999864321 1111 1224667899999999999999999999999999999999999
Q ss_pred CCCcCcchhhhhhhhhhHHHHHHHHHHHhcCccCC-ccccCCccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027840 146 HFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGG-GVTVPSAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 146 ~~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~~-~~t~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
+++|.+.|+|+++|++|+++|+++++.++.....+ ..+.|+.+.+++|+.|+++||+|++++++++.|+|+
T Consensus 97 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~ 168 (252)
T PLN00027 97 NITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKK 168 (252)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999998776543222 224467889999999999999999999998777764
No 13
>PLN00166 aquaporin TIP2; Provisional
Probab=99.95 E-value=7.6e-27 Score=203.26 Aligned_cols=147 Identities=27% Similarity=0.360 Sum_probs=122.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhhc-c-cc-C--CCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHh
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIVN-Q-KT-Q--GSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAAL 144 (218)
Q Consensus 70 ~~~l~~~~~aEfiGTf~lvf~~~~~~~~~-~-~~-~--~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~ 144 (218)
+.+.+|++++||+||++|+|+++++.... . .. + ...+++.+++++|+++++.+++++++||+|+|||||+++++.
T Consensus 14 ~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~ 93 (250)
T PLN00166 14 SVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG 93 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh
Confidence 35668999999999999999999865431 1 11 1 123466788999999999999999999999999999999999
Q ss_pred cCCCcCcchhhhhhhhhhHHHHHHHHHHHhcCccCC-ccccCCccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027840 145 KHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGG-GVTVPSAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 145 g~~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~~-~~t~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
++++|.++|+||++|++|+++|+.+++.++...... ....++.+..++|+.|+++||+|++++++++.|+|+
T Consensus 94 g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~ 166 (250)
T PLN00166 94 GNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKK 166 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999887642211 112346788999999999999999999998777664
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.93 E-value=2.2e-25 Score=191.23 Aligned_cols=141 Identities=38% Similarity=0.589 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccC-CCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCCcCcch
Q 027840 75 RKVGAEFVGTLILIFAGTATAIVNQKTQ-GSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVP 153 (218)
Q Consensus 75 ~~~~aEfiGTf~lvf~~~~~~~~~~~~~-~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~~~~~~ 153 (218)
|++++||+||++++|.++++....+..+ ...+.+.++++||+.+++.+++++++||+|+|||+|+++++.++++|.+.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 5689999999999999998654433222 123456789999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCccC----Cc-------cccC--CccHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 027840 154 VYIGAQIMASLCAAFALKGIFHPIMG----GG-------VTVP--SAGYGEAFALEFIISFNLMFVVTAVATDTR 215 (218)
Q Consensus 154 ~yiiaQ~lGa~~ga~l~~~~~~~~~~----~~-------~t~p--~~s~~~~f~~E~i~Tf~L~~~il~va~d~r 215 (218)
+||++|++|+++|+.+++.++.+... +. .+.| +.+.+++++.|+++|++|+++++++..+++
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~ 155 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPN 155 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999988765321 11 1334 458999999999999999999999854443
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.92 E-value=2.2e-24 Score=183.61 Aligned_cols=135 Identities=39% Similarity=0.575 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccc---CCCc--hhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCCcCcch
Q 027840 79 AEFVGTLILIFAGTATAIVNQKT---QGSE--TLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVP 153 (218)
Q Consensus 79 aEfiGTf~lvf~~~~~~~~~~~~---~~~~--~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~~~~~~ 153 (218)
+||+||++|+|+++++....+.. +... +...++++||+.+++.+++++++||+|+|||||+++++.++++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 59999999999999865432111 1111 467789999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCccCC---ccc--cCCccHHHHHHHHHHHHHHHHHHHHHhhcC
Q 027840 154 VYIGAQIMASLCAAFALKGIFHPIMGG---GVT--VPSAGYGEAFALEFIISFNLMFVVTAVATD 213 (218)
Q Consensus 154 ~yiiaQ~lGa~~ga~l~~~~~~~~~~~---~~t--~p~~s~~~~f~~E~i~Tf~L~~~il~va~d 213 (218)
+|+++|++|+++|+++++.++.+.... ... .++.+.+++++.|+++|++|+++++....+
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~ 145 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDP 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecC
Confidence 999999999999999999888764321 111 135689999999999999999999997543
No 16
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.75 E-value=4.4e-18 Score=145.98 Aligned_cols=104 Identities=27% Similarity=0.330 Sum_probs=88.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhc
Q 027840 66 LPPPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALK 145 (218)
Q Consensus 66 ~~~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g 145 (218)
.+.++.+.++++++|+++|++|++.+++.....++. ......++.+|+.+.+++++.+++||+|+|||||+++++.+
T Consensus 122 ~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~---~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~ 198 (228)
T cd00333 122 YPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGP---PPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFT 198 (228)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccC---CCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHh
Confidence 345667889999999999999999999865432221 11224578899999999999999999999999999999999
Q ss_pred CC--CcCcchhhhhhhhhhHHHHHHHHHH
Q 027840 146 HF--PWKHVPVYIGAQIMASLCAAFALKG 172 (218)
Q Consensus 146 ~~--~~~~~~~yiiaQ~lGa~~ga~l~~~ 172 (218)
+. +|.+.|+||++|++|+++|+++++.
T Consensus 199 ~~~~~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 199 GLARHWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred ccccccceeehhhhHHHHHHHHHHHHHHh
Confidence 87 7999999999999999999999875
No 17
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.75 E-value=6.6e-18 Score=149.52 Aligned_cols=103 Identities=22% Similarity=0.325 Sum_probs=86.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcC
Q 027840 67 PPPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKH 146 (218)
Q Consensus 67 ~~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~ 146 (218)
+.+..+.++++++|+++|++|++++++....++. . .. ..++++|+++++.+++.+++||+|+|||||+++++.++
T Consensus 152 ~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~-~--~~--~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~ 226 (283)
T PLN00182 152 TTPTDSSGQALVAEIIISFLLMFVISGVATDSRA-V--GE--LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG 226 (283)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhheecccc-C--Cc--chhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc
Confidence 3455678999999999999999999875332221 1 11 25788999999999999999999999999999999855
Q ss_pred CCcCcchhhhhhhhhhHHHHHHHHHHHhc
Q 027840 147 FPWKHVPVYIGAQIMASLCAAFALKGIFH 175 (218)
Q Consensus 147 ~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~ 175 (218)
.|.++|+||++|++|+++|+++++.+..
T Consensus 227 -~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 227 -RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred -cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999998874
No 18
>PLN00026 aquaporin NIP; Provisional
Probab=99.73 E-value=1.1e-17 Score=148.93 Aligned_cols=103 Identities=26% Similarity=0.331 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCC
Q 027840 69 PPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFP 148 (218)
Q Consensus 69 ~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~ 148 (218)
+..+.+++++.||++|++|++++++.....+ ..+ . ..++++|+++++.+++.+++||+|+|||||+++++..+ +
T Consensus 182 p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~-~~~--~--~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~-~ 255 (298)
T PLN00026 182 PSVSTGQAFALEFIITFNLLFVVTAVATDTR-AVG--E--LAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG-N 255 (298)
T ss_pred ecccHHHHHHHHHHHHHHHHHhheeeecCCC-CcC--C--ccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC-C
Confidence 3557789999999999999999986432211 111 1 24588999999999999999999999999999999876 7
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHhcCc
Q 027840 149 WKHVPVYIGAQIMASLCAAFALKGIFHPI 177 (218)
Q Consensus 149 ~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~ 177 (218)
|.++|+||++|++|+++|+++|+.+..+.
T Consensus 256 ~~~~wVy~vaPilGAilga~ly~~~~~~~ 284 (298)
T PLN00026 256 YRAIWIYLVAPTLGALAGAGTYTAVKLRE 284 (298)
T ss_pred chheeHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999998875543
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.71 E-value=3.4e-17 Score=144.43 Aligned_cols=106 Identities=23% Similarity=0.343 Sum_probs=88.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCC
Q 027840 68 PPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHF 147 (218)
Q Consensus 68 ~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~ 147 (218)
.+..+.++++++|+++|++|++.+++.....++. . . ..++.+|+.+++.++..+++||+|+|||||+++++.+ .
T Consensus 155 ~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~-~---~-~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~-~ 228 (274)
T PLN00183 155 KPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSL-G---H-LSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS-W 228 (274)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhheeeccccCC-C---C-ceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC-C
Confidence 3445678999999999999999998754322211 1 1 1357899999999999999999999999999999986 5
Q ss_pred CcCcchhhhhhhhhhHHHHHHHHHHHhcCccC
Q 027840 148 PWKHVPVYIGAQIMASLCAAFALKGIFHPIMG 179 (218)
Q Consensus 148 ~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~ 179 (218)
+|.++|+||++|++|+++|+++++.++.+...
T Consensus 229 ~~~~~wvy~vapilGailaa~l~~~l~~~~~~ 260 (274)
T PLN00183 229 DFKDIWIYITAPTIGAVAGALMFHLLRLRTQP 260 (274)
T ss_pred ChhheehHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 79999999999999999999999999876543
No 20
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.70 E-value=6.5e-17 Score=137.72 Aligned_cols=100 Identities=26% Similarity=0.305 Sum_probs=83.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhc-C
Q 027840 68 PPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALK-H 146 (218)
Q Consensus 68 ~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g-~ 146 (218)
.++.+.++.++.|+++|++|++.++.....+++.... ...++.+|+.+++.++..+.+||+|+|||||+++++.+ .
T Consensus 116 ~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~---~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~ 192 (216)
T TIGR00861 116 AAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPRG---GFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGL 192 (216)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCCC---ccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhcc
Confidence 3456889999999999999999999765432221111 13678899999999999999999999999999999986 5
Q ss_pred CCcCcchhhhhhhhhhHHHHHHHH
Q 027840 147 FPWKHVPVYIGAQIMASLCAAFAL 170 (218)
Q Consensus 147 ~~~~~~~~yiiaQ~lGa~~ga~l~ 170 (218)
.+|.+.|+||++|++|+++|+.+|
T Consensus 193 ~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 193 AGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred ccccceeHHHHHHHHHHHHHHHhC
Confidence 789999999999999999998764
No 21
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.69 E-value=3.1e-17 Score=141.81 Aligned_cols=107 Identities=25% Similarity=0.328 Sum_probs=92.3
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHH
Q 027840 64 CSLPPPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAA 143 (218)
Q Consensus 64 ~~~~~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l 143 (218)
...+.++.+.+|.++.|++.||.|+|..++.+...++. ...++.+|+++.+.++..+++||++|||||++++++
T Consensus 122 ~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAv 195 (238)
T KOG0223|consen 122 LTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAV 195 (238)
T ss_pred eeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHH
Confidence 34456778889999999999999999999833222221 345788999999999999999999999999999999
Q ss_pred hcCCCcCcchhhhhhhhhhHHHHHHHHHHHhcCc
Q 027840 144 LKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPI 177 (218)
Q Consensus 144 ~g~~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~ 177 (218)
..+. |.++|+||++|++|+++++++|+.++.+.
T Consensus 196 v~~~-w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 196 VYGS-WDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred HhcC-CCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 9776 99999999999999999999999998765
No 22
>PLN00184 aquaporin NIP1; Provisional
Probab=99.66 E-value=5.3e-16 Score=138.21 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCC
Q 027840 69 PPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFP 148 (218)
Q Consensus 69 ~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~ 148 (218)
+..+.+++++.|+++|++|++++++....++.. + . ..++.+|+.+++.+++.+++||+++|||||+++++... .
T Consensus 173 p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~-~--~--~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~-~ 246 (296)
T PLN00184 173 PVGSDLQAFVMEFIVTFYLMFIISGVATDNRAI-G--E--LAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG-C 246 (296)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHheeccCcCC-C--c--chHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh-c
Confidence 345789999999999999999999754322211 1 1 24688999999999999999999999999999999754 4
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHhcCc
Q 027840 149 WKHVPVYIGAQIMASLCAAFALKGIFHPI 177 (218)
Q Consensus 149 ~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~ 177 (218)
|.++|+||++|++|+++|+++|+.++..+
T Consensus 247 ~~~~WVy~vgPilGa~laal~y~~l~~~~ 275 (296)
T PLN00184 247 YKGIWIYIVAPTLGAIAGAWVYNTVRYTD 275 (296)
T ss_pred ccccchHHhHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999887543
No 23
>PLN00027 aquaporin TIP; Provisional
Probab=99.62 E-value=3.4e-15 Score=130.31 Aligned_cols=108 Identities=26% Similarity=0.248 Sum_probs=88.7
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHh
Q 027840 65 SLPPPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAAL 144 (218)
Q Consensus 65 ~~~~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~ 144 (218)
....+..+.++.++.|+++||+|++.+++.....++. .. ....++.+|+.++.+++..+..||+.+||||++++++.
T Consensus 133 ~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~-~~--~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~ 209 (252)
T PLN00027 133 FSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKG-DL--GIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV 209 (252)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHHhccccccC-Cc--cchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHH
Confidence 3345677889999999999999999998753222211 11 12356889999999999999999999999999999998
Q ss_pred cCCCcCcchhhhhhhhhhHHHHHHHHHHHhcC
Q 027840 145 KHFPWKHVPVYIGAQIMASLCAAFALKGIFHP 176 (218)
Q Consensus 145 g~~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~ 176 (218)
.. .|.++|+||++|++|+++|+++|+.++.+
T Consensus 210 ~~-~~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 240 (252)
T PLN00027 210 SW-TWTNHWVYWAGPLIGGGIAGLVYELIFIG 240 (252)
T ss_pred hh-cchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 58999999999999999999999998754
No 24
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.62 E-value=3e-15 Score=133.32 Aligned_cols=109 Identities=21% Similarity=0.159 Sum_probs=87.7
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHh
Q 027840 65 SLPPPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAAL 144 (218)
Q Consensus 65 ~~~~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~ 144 (218)
..+.|+.+..+.++.|+++|++|++++++..+.++... .+ ..++.+|+.+.++.++.+..||+.+||||++++++.
T Consensus 175 f~t~p~~s~~~a~~~E~i~T~iLv~~ila~~d~~~~~~--~~--~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~ 250 (294)
T PTZ00016 175 FATYPREGNFYAIFSELILTAILLLVILAITDPNNCPA--FN--YLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLF 250 (294)
T ss_pred eeCCCCccHHHHHHHHHHHHHHHHHHHHHhccCccCCC--cC--cccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHH
Confidence 34455778899999999999999999998654332211 11 246779999999999999999999999999999997
Q ss_pred c-----CCCcC----cchhhhhhhhhhHHHHHHHHHHHhcCc
Q 027840 145 K-----HFPWK----HVPVYIGAQIMASLCAAFALKGIFHPI 177 (218)
Q Consensus 145 g-----~~~~~----~~~~yiiaQ~lGa~~ga~l~~~~~~~~ 177 (218)
. +..|. +.|+||++|++|+++|+++|+.+..+.
T Consensus 251 ~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~ 292 (294)
T PTZ00016 251 SAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPL 292 (294)
T ss_pred HHHhccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 3 22343 689999999999999999999887654
No 25
>PLN00166 aquaporin TIP2; Provisional
Probab=99.61 E-value=4.5e-15 Score=129.46 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCC
Q 027840 69 PPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFP 148 (218)
Q Consensus 69 ~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~ 148 (218)
++.+..+.++.|+++|++|++..++.....++. ... ...++.+|+.++++++..++.||+.+||||++++++..+ .
T Consensus 135 ~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~-~~~--~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~-~ 210 (250)
T PLN00166 135 AGLGAIEGVVMEIVVTFALVYTVYATAADPKKG-SLG--TIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-D 210 (250)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhccccccc-ccc--cchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC-C
Confidence 456779999999999999999999754322211 111 135688999999999999999999999999999999865 5
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHhcC
Q 027840 149 WKHVPVYIGAQIMASLCAAFALKGIFHP 176 (218)
Q Consensus 149 ~~~~~~yiiaQ~lGa~~ga~l~~~~~~~ 176 (218)
|.+.|+||++|++|+++|+++++.++.+
T Consensus 211 ~~~~wvywvgPi~Ga~~aa~~y~~l~~~ 238 (250)
T PLN00166 211 FSQIWIYWVGPLVGGALAGLIYGDVFIG 238 (250)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999887653
No 26
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.60 E-value=6.5e-15 Score=127.35 Aligned_cols=114 Identities=22% Similarity=0.204 Sum_probs=89.3
Q ss_pred CCCCcccccCCCCC-hhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccch
Q 027840 57 GRLPSVSCSLPPPP-VSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNP 135 (218)
Q Consensus 57 ~~~~~~~~~~~~~~-~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNP 135 (218)
+.....+...+.|. +++++.++.|+++||+|++.+.+..+.++. +.+ ..++.+|+.++.+.++.++.||..+||
T Consensus 118 ~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~---~~~--~apl~iGllv~~i~~s~g~~TG~aiNP 192 (241)
T COG0580 118 DPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA---NAG--FAPLAIGLLVTAIGLSLGPTTGTAINP 192 (241)
T ss_pred CchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc---ccc--chHHHHHHHHHHHHHHhcCCCCCccCh
Confidence 33445555666555 588999999999999999999985442222 111 357889999999999999999999999
Q ss_pred HhhHHHHHhcC----C----CcCcchhhhhhhhhhHHHHHHHHHHHhc
Q 027840 136 AVTIAFAALKH----F----PWKHVPVYIGAQIMASLCAAFALKGIFH 175 (218)
Q Consensus 136 AvTla~~l~g~----~----~~~~~~~yiiaQ~lGa~~ga~l~~~~~~ 175 (218)
|||+++++... . +.+++|+||++|++|+++|+++++.++.
T Consensus 193 ARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 193 ARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred HHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 99999998321 1 1258999999999999999999987653
No 27
>PRK05420 aquaporin Z; Provisional
Probab=99.59 E-value=6.7e-15 Score=126.94 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhc-CCC
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALK-HFP 148 (218)
Q Consensus 70 ~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g-~~~ 148 (218)
..+..+.++.|+++|++|++..++..+.++ . .. ..++.+|+.+.+..+..++.||+.+|||||+++++.. ...
T Consensus 128 ~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~--~--~~--~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~ 201 (231)
T PRK05420 128 GYSLLAALVCEVVLTAFFLLVILGATDKRA--P--AG--FAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWA 201 (231)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhCCCC--C--Cc--chHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCC
Confidence 357899999999999999999997654321 1 11 2568899999999999999999999999999999974 344
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHhcC
Q 027840 149 WKHVPVYIGAQIMASLCAAFALKGIFHP 176 (218)
Q Consensus 149 ~~~~~~yiiaQ~lGa~~ga~l~~~~~~~ 176 (218)
|.++|+||++|++|+++++++|+.++++
T Consensus 202 ~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 229 (231)
T PRK05420 202 LEQLWLFWVAPIVGAIIGGLIYRLLLEK 229 (231)
T ss_pred ccceEEeehHHHHHHHHHHHHHHHHhcc
Confidence 5689999999999999999999988765
No 28
>PLN00167 aquaporin TIP5; Provisional
Probab=99.55 E-value=2.6e-14 Score=125.09 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCCc
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPW 149 (218)
Q Consensus 70 ~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~~ 149 (218)
..+.++.++.|+++|++|++..++..+.++.. .. ...++.+|+.++++.+..++.||+.+||||++++++... .|
T Consensus 140 ~~s~~~~~~~E~i~T~~L~~~i~~~~~~~~~~--~~--~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~-~~ 214 (256)
T PLN00167 140 EMTGFGASVLEGVLTFGLVYTVYAAGDPRRGL--LG--AIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG-SF 214 (256)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccccccC--CC--CcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc-Cc
Confidence 44668999999999999999988754322211 11 134678999999999999999999999999999999865 58
Q ss_pred CcchhhhhhhhhhHHHHHHHHHHHhcCcc
Q 027840 150 KHVPVYIGAQIMASLCAAFALKGIFHPIM 178 (218)
Q Consensus 150 ~~~~~yiiaQ~lGa~~ga~l~~~~~~~~~ 178 (218)
.+.|+||++|++|+++++++|+.++.+..
T Consensus 215 ~~~wvywvgP~~Ga~l~a~~y~~l~~~~~ 243 (256)
T PLN00167 215 KNQAVYWVGPLLGGAVAGLLYDNVVFPTQ 243 (256)
T ss_pred cCcEEEeHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999999999999999999887543
No 29
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.54 E-value=2.4e-14 Score=122.15 Aligned_cols=104 Identities=30% Similarity=0.402 Sum_probs=85.8
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHH
Q 027840 63 SCSLPPPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFA 142 (218)
Q Consensus 63 ~~~~~~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~ 142 (218)
.+..+.++.+.++.++.|+++|++|++..+...+.+++... +. ..++.+|+.+.+..+..+..||+.+||||+++++
T Consensus 124 ~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~~~-~~--~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~ 200 (227)
T PF00230_consen 124 FATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRKFPL-GP--LAPLAIGLTVGALVLAGGPYTGASLNPARALGPA 200 (227)
T ss_dssp TSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSSTS-SG--GHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhhhHHHhhhhhhccccccccc-cc--ccceeEEEEEeecccccccccccccCchhhcCce
Confidence 34456777899999999999999999999886544433321 11 2467889999999999999999999999999999
Q ss_pred HhcCCCcCcchhhhhhhhhhHHHHHHHH
Q 027840 143 ALKHFPWKHVPVYIGAQIMASLCAAFAL 170 (218)
Q Consensus 143 l~g~~~~~~~~~yiiaQ~lGa~~ga~l~ 170 (218)
+.... |.+.|+||++|++|+++|+++|
T Consensus 201 l~~~~-~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 201 LFSGI-WDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp HHHTH-HTTTTHHHHHHHHHHHHHHHHH
T ss_pred eeccc-CCeEEEEEehHHHHHHHHHhhC
Confidence 98766 9999999999999999999876
No 30
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.15 E-value=3.8e-11 Score=106.09 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=86.4
Q ss_pred cccccC--CCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhh
Q 027840 61 SVSCSL--PPPPVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVT 138 (218)
Q Consensus 61 ~~~~~~--~~~~~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvT 138 (218)
+.+|+. |.|..+++++++.||+||.+|+.+.++..+..+ .-. ....++.+|+.++++..++|.-+|..+||||+
T Consensus 153 TAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l~aI~D~rN--~~p--~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARD 228 (316)
T KOG0224|consen 153 TAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCLFAITDKRN--PIP--TGLHPLVIGILVVAIGMSLGYNTGYAINPARD 228 (316)
T ss_pred ceEEEeecCchHhhhhHHHHHHHHHHHHHHhheeEEecCCC--CCC--cchhHHHHHHHHHHHHHHhhcccCcccCcccc
Confidence 444444 566789999999999999999998887544332 111 12357889999999999999999999999999
Q ss_pred HHHHHhc--------CCC--cCcchhhhhhhhhhHHHHHHHHHHHhc
Q 027840 139 IAFAALK--------HFP--WKHVPVYIGAQIMASLCAAFALKGIFH 175 (218)
Q Consensus 139 la~~l~g--------~~~--~~~~~~yiiaQ~lGa~~ga~l~~~~~~ 175 (218)
+++.+.- -++ -...|+.|+++++|+++|+++|.....
T Consensus 229 lgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig 275 (316)
T KOG0224|consen 229 LGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIG 275 (316)
T ss_pred cchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeee
Confidence 9988851 111 135688999999999999999987654
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=70.11 E-value=80 Score=28.09 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCchhHHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCCcC
Q 027840 71 VSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWK 150 (218)
Q Consensus 71 ~~l~~~~~aEfiGTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~~~ 150 (218)
..++++..+-+.-++-+++.....+.. .+.......+.-++.+++.+..+++.-+..--+ |--........++++|+
T Consensus 29 ~~~l~ai~AG~~i~lg~~~~~~~~~~~-~~~~~~~~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~ 105 (265)
T COG2116 29 KLLLLAILAGAFIGLGFLFYITVGTGL-PGAPGGLAKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWG 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCcchHHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHH
Confidence 455666666554444444333321111 111111234555666666666666654432111 22222233445788888
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhc--C--ccCCccc------c----CCccHHHHHHHHHHHHHHHHHHHHH
Q 027840 151 HVPVYIGAQIMASLCAAFALKGIFH--P--IMGGGVT------V----PSAGYGEAFALEFIISFNLMFVVTA 209 (218)
Q Consensus 151 ~~~~yiiaQ~lGa~~ga~l~~~~~~--~--~~~~~~t------~----p~~s~~~~f~~E~i~Tf~L~~~il~ 209 (218)
+.+--|+-=.+|=++|++++.+++. . ...++.. . -+.+..|.|+.-+++.++.++.+..
T Consensus 106 ~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm 178 (265)
T COG2116 106 QLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWM 178 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666776666555441 1 1111111 0 1346789998888888887776643
No 32
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=39.72 E-value=2.5e+02 Score=24.34 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCCcCcchhhhhhhhhhHHHHHHHHHHHhcCc--cC-Cc---
Q 027840 108 IGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPI--MG-GG--- 181 (218)
Q Consensus 108 ~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~~--~~-~~--- 181 (218)
+..++.+++.+..++..-+..- -=|-.......+.|+.+|.+.+--|.-=.+|=++|++++-.++... .. ..
T Consensus 58 l~~g~~F~~Gl~lIv~~g~eLf--Tgn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~~ 135 (250)
T PF01226_consen 58 LVGGLVFPIGLVLIVFLGGELF--TGNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAMG 135 (250)
T ss_dssp HHHHHHHTHHHHHHHHHT---T--TTTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhc--ccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 3445566666666666533321 1155545556677888888766666655666666666554433211 11 11
Q ss_pred -----c--ccCCccHHHHHHHHHHHHHHHHHHHHHh
Q 027840 182 -----V--TVPSAGYGEAFALEFIISFNLMFVVTAV 210 (218)
Q Consensus 182 -----~--t~p~~s~~~~f~~E~i~Tf~L~~~il~v 210 (218)
. .--+.++++.|+-=+++.++..+.+...
T Consensus 136 ~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~ 171 (250)
T PF01226_consen 136 EYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLA 171 (250)
T ss_dssp HHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0014578999999999999988888653
No 33
>PRK11562 nitrite transporter NirC; Provisional
Probab=39.18 E-value=2.7e+02 Score=24.59 Aligned_cols=98 Identities=8% Similarity=0.102 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCccccchHhhHHHHHhcCCCcCcchhhhhhhhhhHHHHHHHHHHHhcC----ccC--Ccc-
Q 027840 110 LAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHP----IMG--GGV- 182 (218)
Q Consensus 110 ~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~l~g~~~~~~~~~yiiaQ~lGa~~ga~l~~~~~~~----~~~--~~~- 182 (218)
.++.+++.+.++++.-+..--+ |=.......+.|+.+|.+.+--|.-=.+|=++|++++-.++.. ... ...
T Consensus 61 ~g~~F~~GLilVi~~G~eLFTg--n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~~ 138 (268)
T PRK11562 61 MGATFGIALTLVIIAGSELFTG--HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIV 138 (268)
T ss_pred HHHHHHHHHHHHHHhCcccccc--chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHH
Confidence 3445555555555543222111 3333334556677888766656655556666666554433211 111 100
Q ss_pred -cc----CCccHHHHHHHHHHHHHHHHHHHHH
Q 027840 183 -TV----PSAGYGEAFALEFIISFNLMFVVTA 209 (218)
Q Consensus 183 -t~----p~~s~~~~f~~E~i~Tf~L~~~il~ 209 (218)
+. -+.+.++.|+-=+++.++..+.+..
T Consensus 139 ~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~ 170 (268)
T PRK11562 139 HSVALAKTTAPAMVLFFKGALCNWLVCLAIWM 170 (268)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1356888888888888888877744
No 34
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=34.42 E-value=11 Score=34.28 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=18.3
Q ss_pred hhCCCCccccchHhhHHHHHhc
Q 027840 124 STGHISGAHLNPAVTIAFAALK 145 (218)
Q Consensus 124 ~~g~iSGahlNPAvTla~~l~g 145 (218)
+.++-||+|+.||+.++-.+..
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 4567789999999999988854
No 35
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=32.81 E-value=16 Score=27.57 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=17.1
Q ss_pred CCCCccccchHhhHHHHHhcC
Q 027840 126 GHISGAHLNPAVTIAFAALKH 146 (218)
Q Consensus 126 g~iSGahlNPAvTla~~l~g~ 146 (218)
..-|++|+||.+.++-.+.++
T Consensus 5 ~~Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 5 TGGTRGHVYPFLALARALRRR 25 (139)
T ss_dssp EESSHHHHHHHHHHHHHHHHT
T ss_pred EcCChhHHHHHHHHHHHHhcc
Confidence 345789999999999888643
No 36
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=24.00 E-value=3.3e+02 Score=22.17 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=20.3
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHh
Q 027840 149 WKHVPVYIGAQIMASLCAAFALKGIF 174 (218)
Q Consensus 149 ~~~~~~yiiaQ~lGa~~ga~l~~~~~ 174 (218)
+...+.|..+-+.|+++|..+++.+.
T Consensus 123 ~~~v~~F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 123 FFFVPPFLISTLIGAIIGYILLKALK 148 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667788888899999888887653
No 37
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.35 E-value=3.6e+02 Score=25.94 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=36.9
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCccCCccccCCccHHHHHHHHHHHHHHHHHHHH
Q 027840 151 HVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTVPSAGYGEAFALEFIISFNLMFVVT 208 (218)
Q Consensus 151 ~~~~yiiaQ~lGa~~ga~l~~~~~~~~~~~~~t~p~~s~~~~f~~E~i~Tf~L~~~il 208 (218)
+.-++..++-+|.++|+++.+.++. +.+. .....+...|+.|-+.|+.+-++++
T Consensus 171 r~~~~~a~~~~g~i~ggliA~g~~~--~~~~--~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 171 RMGIWYASASLGNIFGGLIAYGVFK--LNGS--GGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred hHHHHHHhcchhhHHHHHHHHHhhh--hcCC--CCcCCceeehhHHHHHHHHHHheEE
Confidence 5556777777888888888887765 2221 1224566778888888888776654
No 38
>PF05564 Auxin_repressed: Dormancy/auxin associated protein; InterPro: IPR008406 This family contains several plant dormancy-associated and auxin-repressed proteins the function of which is poorly understood [].
Probab=20.60 E-value=79 Score=24.74 Aligned_cols=17 Identities=53% Similarity=0.929 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCCC
Q 027840 9 APSTPATPGTPGAPLFG 25 (218)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (218)
.|++|+||.||..|+..
T Consensus 52 ~P~sP~t~~tP~sp~s~ 68 (119)
T PF05564_consen 52 PPSSPATPSTPTSPFSP 68 (119)
T ss_pred CCCCCCCCCCCCCCcCc
Confidence 55677777777766653
Done!