Query 027840
Match_columns 218
No_of_seqs 171 out of 1244
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:17:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027840.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2206-2209//hhsearch_pdb/027840hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 1.0 1 1 210.7 14.5 146 70-215 48-199 (340)
2 3llq_A Aquaporin Z 2; aquapori 1.0 1 1 208.9 15.6 148 69-217 25-184 (256)
3 2w2e_A AQY1, aquaporin, aquapo 1.0 1 1 208.3 17.6 149 67-216 38-195 (279)
4 1ldf_A Glycerol uptake facilit 1.0 1 1 207.9 13.7 146 70-216 4-171 (281)
5 3cn5_A Aquaporin; membrane pro 1.0 1 1 207.8 14.5 146 69-215 56-209 (304)
6 2zz9_A Aquaporin-4; water tran 1.0 1 1 206.1 16.7 147 69-216 8-160 (301)
7 3d9s_A Aquaporin-5, AQP-5; aqu 1.0 1 1 205.3 14.2 144 70-216 8-155 (266)
8 2o9g_A Aquaporin Z; integral m 1.0 1 1 204.7 15.3 145 72-217 3-161 (234)
9 1j4n_A Aquaporin 1; membrane p 1.0 1 1 204.1 13.6 146 70-216 7-163 (271)
10 3gd8_A Aquaporin-4; proton exc 1.0 1 1 203.8 14.0 144 72-216 2-151 (223)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=210.66 Aligned_cols=146 Identities=29% Similarity=0.435 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 8368999999999999999998744441024-6-8984267889999999999999618898665424856999971378
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIVNQK-T-QGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHF 147 (218)
Q Consensus 70 ~~~l~~~~iaEfigTf~lvf~~~~~~~~~~~-~-~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~i~g~~ 147 (218)
..+++|++++||+|||+|+|+++++.....+ . ....+++.++++||++|++.+++++++||+|+|||||+++++.|++
T Consensus 48 ~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~ 127 (340)
T 3iyz_A 48 TQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKI 127 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCEECHHHHHHHHHCCCC
T ss_conf 19999999999999999999999999715567788875349999999999988605701157570581979999985999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 767320364345666999999999972375688--6146--8865799999999999999999888604798
Q 027840 148 PWKHVPVYIGAQIMASLCAAFALKGIFHPIMGG--GVTV--PSAGYGEAFALEFIISFNLMFVVTAVATDTR 215 (218)
Q Consensus 148 ~~~~~~~yiiaQ~lGai~aa~~~~~i~~~~~~~--~~t~--p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r 215 (218)
+|.+++.||++|++|+++|+++++.++++...+ +.+. +..+..++|+.|+++||+|+++|+++..++|
T Consensus 128 ~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~ 199 (340)
T 3iyz_A 128 SIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKR 199 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 799979999999989999989999725121147501115898657899999999999999999998625766
No 2
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=1.00 E-value=1 Score=208.93 Aligned_cols=148 Identities=29% Similarity=0.421 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 983689999999999999999987444410246-8984267889999999999999618898665424856999971378
Q 027840 69 PPVSLARKVGAEFVGTLILIFAGTATAIVNQKT-QGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHF 147 (218)
Q Consensus 69 ~~~~l~~~~iaEfigTf~lvf~~~~~~~~~~~~-~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~i~g~~ 147 (218)
...+++|++++||+||++|++.++++....... ....+++.++++||++|++.+++++++||+|+|||||+++++.|++
T Consensus 25 ~~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 104 (256)
T 3llq_A 25 QSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRF 104 (256)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCEECHHHHHHHHHHCCC
T ss_conf 19999999999999999999999999987134888774379999999999999980430666065756999999996689
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CC--------CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 767320364345666999999999972375--68--------861468-8657999999999999999998886047988
Q 027840 148 PWKHVPVYIGAQIMASLCAAFALKGIFHPI--MG--------GGVTVP-SAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 148 ~~~~~~~yiiaQ~lGai~aa~~~~~i~~~~--~~--------~~~t~p-~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
+|.+++.||++|++|+++|+++++.++++. .. ..+|.| ..+..++|+.|+++||+|+++++++ +|+|+
T Consensus 105 ~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~-~d~~~ 183 (256)
T 3llq_A 105 PASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGS-THGRV 183 (256)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH-HSTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf 89999999999999999999999998077622233566545402468764578999999999999999999996-37777
Q ss_pred C
Q ss_conf 9
Q 027840 217 V 217 (218)
Q Consensus 217 ~ 217 (218)
.
T Consensus 184 ~ 184 (256)
T 3llq_A 184 P 184 (256)
T ss_dssp C
T ss_pred C
T ss_conf 7
No 3
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=1.00 E-value=1 Score=208.27 Aligned_cols=149 Identities=25% Similarity=0.252 Sum_probs=125.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC-----CC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 9998368999999999999999998744441-024-----68-9842678899999999999996188986654248569
Q 027840 67 PPPPVSLARKVGAEFVGTLILIFAGTATAIV-NQK-----TQ-GSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTI 139 (218)
Q Consensus 67 ~~~~~~l~~~~iaEfigTf~lvf~~~~~~~~-~~~-----~~-~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTl 139 (218)
++.-++.+|++++||+|||+|+|.+++.... +.. .. ...+++.++++||+++++.+++++++||+|+|||||+
T Consensus 38 ~~~~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTl 117 (279)
T 2w2e_A 38 SDSVRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTL 117 (279)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 18899999999999999999999999999995122334556787743799999999999999999860476650819999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9997137876732036434566699999999997237568861468--8657999999999999999998886047988
Q 027840 140 AFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTVP--SAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 140 a~~i~g~~~~~~~~~yiiaQ~lGai~aa~~~~~i~~~~~~~~~t~p--~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
++++.|+++|.+++.||++|++|+++|+++++.++++... ..|.| +.+..++|+.|+++||+|++++++++.|+++
T Consensus 118 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~-~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~ 195 (279)
T 2w2e_A 118 ALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA-FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR 195 (279)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC-CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9998379989999999999999999999999998266413-41158865337889999999999999999987057887
No 4
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=1.00 E-value=1 Score=207.90 Aligned_cols=146 Identities=34% Similarity=0.446 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 83689999999999999999987444410246898426788999999999999961889866542485699997137876
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPW 149 (218)
Q Consensus 70 ~~~l~~~~iaEfigTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~i~g~~~~ 149 (218)
+.+++|++++||+|||+|+|.++++.......+...+...++++||+++++.+++++++||+|+|||||+++++.|+++|
T Consensus 4 ~~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 83 (281)
T 1ldf_A 4 TSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDK 83 (281)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECHHHHHHHHHCCCCCH
T ss_conf 57899999999999999999999999876506887760799999999998774233045767417398999999079989
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCC--------------------CCCCCCCC--CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 73203643456669999999999723756--------------------88614688--657999999999999999998
Q 027840 150 KHVPVYIGAQIMASLCAAFALKGIFHPIM--------------------GGGVTVPS--AGYGEAFALEFIISFNLMFVV 207 (218)
Q Consensus 150 ~~~~~yiiaQ~lGai~aa~~~~~i~~~~~--------------------~~~~t~p~--~s~~~~f~~E~i~Tf~L~~~i 207 (218)
.+++.||++|++|+++|+++++.++++.. ...+|.|. .+..++|+.|+++||+|+++|
T Consensus 84 ~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~~i 163 (281)
T 1ldf_A 84 RKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI 163 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999841266530553111256532111013110468865558999999999999999999
Q ss_pred HHHHCCCCC
Q ss_conf 886047988
Q 027840 208 TAVATDTRA 216 (218)
Q Consensus 208 l~va~d~r~ 216 (218)
+++ +|+|+
T Consensus 164 l~~-~d~~~ 171 (281)
T 1ldf_A 164 LAL-TDDGN 171 (281)
T ss_dssp HHH-HCTTS
T ss_pred HHH-HCCCC
T ss_conf 997-25678
No 5
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=1.00 E-value=1 Score=207.77 Aligned_cols=146 Identities=31% Similarity=0.448 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 9836899999999999999999874444102--46-89842678899999999999996188986654248569999713
Q 027840 69 PPVSLARKVGAEFVGTLILIFAGTATAIVNQ--KT-QGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALK 145 (218)
Q Consensus 69 ~~~~l~~~~iaEfigTf~lvf~~~~~~~~~~--~~-~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~i~g 145 (218)
...+++|++++||+|||+|+|+++++..... .. ....+++.++++||+++++.+++++++||+|+|||||+++++.|
T Consensus 56 ~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g 135 (304)
T 3cn5_A 56 KLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 135 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHC
T ss_conf 24889999999999999999997677757313457788877233112335334200257623677735818889999807
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 787673203643456669999999999723756---886146--8865799999999999999999888604798
Q 027840 146 HFPWKHVPVYIGAQIMASLCAAFALKGIFHPIM---GGGVTV--PSAGYGEAFALEFIISFNLMFVVTAVATDTR 215 (218)
Q Consensus 146 ~~~~~~~~~yiiaQ~lGai~aa~~~~~i~~~~~---~~~~t~--p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r 215 (218)
+++|.+++.||++|++|+++|+++++.++++.. .++.+. ++.+..++|+.|+++||+|+++|+.+ +|+|
T Consensus 136 ~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~-~d~~ 209 (304)
T 3cn5_A 136 KVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSA-TDPK 209 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-EEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHE-ECCC
T ss_conf 8989999999999999999999999998210454326763456887657889999999999999887630-0576
No 6
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=1.00 E-value=1 Score=206.15 Aligned_cols=147 Identities=28% Similarity=0.419 Sum_probs=124.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 983689999999999999999987444410246--898426788999999999999961889866542485699997137
Q 027840 69 PPVSLARKVGAEFVGTLILIFAGTATAIVNQKT--QGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKH 146 (218)
Q Consensus 69 ~~~~l~~~~iaEfigTf~lvf~~~~~~~~~~~~--~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~i~g~ 146 (218)
...+++|++++||+|||+|+|+++++....... ....+++.++++||+++++.++.++++||+|+|||||+++++.|+
T Consensus 8 ~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~g~ 87 (301)
T 2zz9_A 8 WTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRK 87 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECHHHHHHHHHHCC
T ss_conf 56889999999999999999999999930355778887425999999999998763122357765347199999999558
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8767320364345666999999999972375688--6146--88657999999999999999998886047988
Q 027840 147 FPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGG--GVTV--PSAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 147 ~~~~~~~~yiiaQ~lGai~aa~~~~~i~~~~~~~--~~t~--p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
++|.+++.||++|++|+++|+++++.++++...+ +.+. +..+..++|+.|+++||+|+++++++. |+|+
T Consensus 88 ~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~-d~~~ 160 (301)
T 2zz9_A 88 ISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC-DDKR 160 (301)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHS-CSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf 989999999999999999999999974450004744640487542147899999999999999999860-7778
No 7
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=205.30 Aligned_cols=144 Identities=29% Similarity=0.440 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 83689999999999999999987444410246898426788999999999999961889866542485699997137876
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPW 149 (218)
Q Consensus 70 ~~~l~~~~iaEfigTf~lvf~~~~~~~~~~~~~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~i~g~~~~ 149 (218)
+.+++|++++||+||++|+|.++++... ..+...+++.+++++|+++++.++.++++||+|+|||||+++++.|+++|
T Consensus 8 ~~~~~r~~laEfiGT~~lv~~g~g~~~~--~~~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 85 (266)
T 3d9s_A 8 SVAFLKAVFAEFLATLIFVFFGLGSALK--WPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISL 85 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHSC--CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHTSSSCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCH
T ss_conf 7589999999999999999999999737--88887418999999999999999997246752487799999999548979
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 73203643456669999999999723756--8861468--8657999999999999999998886047988
Q 027840 150 KHVPVYIGAQIMASLCAAFALKGIFHPIM--GGGVTVP--SAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 150 ~~~~~yiiaQ~lGai~aa~~~~~i~~~~~--~~~~t~p--~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
.+++.||++|++|+++|+.+++.++++.. ..+.+.| +.+..|+|+.|+++||+|+++++++ +|+|+
T Consensus 86 ~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~-~d~~~ 155 (266)
T 3d9s_A 86 LRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFAS-TDSRR 155 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCC
T ss_conf 99999999999899999999998724023574121168754247888999999999999999998-36667
No 8
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=1.00 E-value=1 Score=204.74 Aligned_cols=145 Identities=34% Similarity=0.456 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 6899999999999999999874444102468-984267889999999999999618898665424856999971378767
Q 027840 72 SLARKVGAEFVGTLILIFAGTATAIVNQKTQ-GSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWK 150 (218)
Q Consensus 72 ~l~~~~iaEfigTf~lvf~~~~~~~~~~~~~-~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~i~g~~~~~ 150 (218)
+++|++++||+||++|+|.++++...++..+ ...+++.++++||+++++.+++++++||+|+|||||+++++.|+++|.
T Consensus 3 ~l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 82 (234)
T 2o9g_A 3 HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAK 82 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHCCCCHH
T ss_conf 77999999999999999999989970667888886769999999999999999961667342278999999993799899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCC------------CCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3203643456669999999999723756------------8861468-86579999999999999999988860479889
Q 027840 151 HVPVYIGAQIMASLCAAFALKGIFHPIM------------GGGVTVP-SAGYGEAFALEFIISFNLMFVVTAVATDTRAV 217 (218)
Q Consensus 151 ~~~~yiiaQ~lGai~aa~~~~~i~~~~~------------~~~~t~p-~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~~ 217 (218)
+++.|+++|++|+++|+.+++.++++.. ....|.| +.+..++|+.|+++||+|+++++++ +|+|+.
T Consensus 83 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~-~d~~~~ 161 (234)
T 2o9g_A 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAP 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH-TSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCC
T ss_conf 9999999999999999999999926764311125654432044137874443889999999999999999986-078876
No 9
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=1.00 E-value=1 Score=204.15 Aligned_cols=146 Identities=30% Similarity=0.427 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 836899999999999999999874444102------4689-842678899999999999996188986654248569999
Q 027840 70 PVSLARKVGAEFVGTLILIFAGTATAIVNQ------KTQG-SETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFA 142 (218)
Q Consensus 70 ~~~l~~~~iaEfigTf~lvf~~~~~~~~~~------~~~~-~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~ 142 (218)
+.+++|++++||+||++|+|.++++..... ...+ ..+++.++++||+++++.++.++++||+|+|||||++++
T Consensus 7 ~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~ 86 (271)
T 1j4n_A 7 KKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLL 86 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHH
T ss_conf 57899999999999999999999999863012445666675543399999999999999999716773657589999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7137876732036434566699999999997237568--8--614688657999999999999999998886047988
Q 027840 143 ALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMG--G--GVTVPSAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 143 i~g~~~~~~~~~yiiaQ~lGai~aa~~~~~i~~~~~~--~--~~t~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
+.|+++|.+++.||++|++|+++|+++++.++.+... . ..+.|+.+..++|+.|+++||+|+++++++ +|+|+
T Consensus 87 ~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~-~d~~~ 163 (271)
T 1j4n_A 87 LSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRR 163 (271)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHH-TCSSC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf 928998999999999999999999999999815786433134557876435889999999999999998750-46667
No 10
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=203.85 Aligned_cols=144 Identities=28% Similarity=0.413 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 6899999999999999999874444102-46-898426788999999999999961889866542485699997137876
Q 027840 72 SLARKVGAEFVGTLILIFAGTATAIVNQ-KT-QGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPW 149 (218)
Q Consensus 72 ~l~~~~iaEfigTf~lvf~~~~~~~~~~-~~-~~~~~~~~~al~~Gl~v~~~i~~~g~iSGahlNPAvTla~~i~g~~~~ 149 (218)
+++|++++||+||++|++.++++..... +. ....+++.++++||+++++.+++++++||+|+|||||+++++.|+++|
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 81 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECHHHHHHHHHCCCCCH
T ss_conf 78999999999999999999999971555788887555999999999999998320046616675799999999189989
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 732036434566699999999997237568--8614--688657999999999999999998886047988
Q 027840 150 KHVPVYIGAQIMASLCAAFALKGIFHPIMG--GGVT--VPSAGYGEAFALEFIISFNLMFVVTAVATDTRA 216 (218)
Q Consensus 150 ~~~~~yiiaQ~lGai~aa~~~~~i~~~~~~--~~~t--~p~~s~~~~f~~E~i~Tf~L~~~il~va~d~r~ 216 (218)
.+++.|+++|++|+++|+.+++.++++... .+.+ .|+.+..|+|+.|+++||+|+++++++ +|+|+
T Consensus 82 ~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~-~~~~~ 151 (223)
T 3gd8_A 82 AKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFAS-CDSKR 151 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-TCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCC
T ss_conf 99999999999999999999996255332465112259986478999999999999999999998-25666
Done!