BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027841
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 3/135 (2%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 7 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 64
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 65 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 124
Query: 191 LEDGDTINIDVTVYL 205
+ DGD +NIDVT Y+
Sbjct: 125 ITDGDIVNIDVTAYI 139
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 3/135 (2%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 10 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 127
Query: 191 LEDGDTINIDVTVYL 205
+ DGD +NIDVT Y+
Sbjct: 128 ITDGDIVNIDVTAYI 142
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 3/135 (2%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 61
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 62 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 121
Query: 191 LEDGDTINIDVTVYL 205
+ DGD +NIDVT Y+
Sbjct: 122 ITDGDIVNIDVTAYI 136
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 92/135 (68%), Gaps = 3/135 (2%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 10 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS TS+NE ICHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDSTV 127
Query: 191 LEDGDTINIDVTVYL 205
+ DGD +NIDVT Y+
Sbjct: 128 ITDGDIVNIDVTAYI 142
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 94/151 (62%), Gaps = 22/151 (14%)
Query: 75 LRPGKVSPHRPVPDHIPRPPYVNSQKPIGIVSGPE---------------VHDE--KGIE 117
LRPGK++P R VP HI RP Y + G VS E +HD+ K E
Sbjct: 12 LRPGKITPRRAVPSHILRPDYADRA---GGVSASEEKDRGSKVKVYNIQFLHDDSKKTAE 68
Query: 118 CMRVSG--RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
R+ +L+ +VL+ A KPGITTDE+D+ VH+ ++ YPSPL Y GFPKSVCT
Sbjct: 69 IQRIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCT 128
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLN 206
SVNE ICHGIPDSR LE+GD +NIDV+ YLN
Sbjct: 129 SVNEVICHGIPDSRELEEGDILNIDVSSYLN 159
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 94/148 (63%), Gaps = 8/148 (5%)
Query: 67 EPNRRRKRLRPGK-VSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIEC 118
+P R +LRP + P RPVP +I RP Y + S++ + S ++ + IE
Sbjct: 24 DPYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 83
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 178
MR+ RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 84 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 143
Query: 179 ECICHGIPDSRALEDGDTINIDVTVYLN 206
E ICHGIPD R L++GD +N+D+T+Y N
Sbjct: 144 EVICHGIPDRRPLQEGDIVNVDITLYRN 171
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 92/145 (63%), Gaps = 8/145 (5%)
Query: 70 RRRKRLRPGK-VSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIECMRV 121
R +LRP + P RPVP +I RP Y + S++ + S ++ + IE MR+
Sbjct: 3 RYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRL 62
Query: 122 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181
RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE I
Sbjct: 63 VCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVI 122
Query: 182 CHGIPDSRALEDGDTINIDVTVYLN 206
CHGIPD R L++GD +N+D+T+Y N
Sbjct: 123 CHGIPDRRPLQEGDIVNVDITLYRN 147
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 92/145 (63%), Gaps = 8/145 (5%)
Query: 70 RRRKRLRPGK-VSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIECMRV 121
R +LRP + P RPVP +I RP Y + S++ + S ++ + IE MR+
Sbjct: 2 RYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRL 61
Query: 122 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181
RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE I
Sbjct: 62 VCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVI 121
Query: 182 CHGIPDSRALEDGDTINIDVTVYLN 206
CHGIPD R L++GD +N+D+T+Y N
Sbjct: 122 CHGIPDRRPLQEGDIVNVDITLYRN 146
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 93/148 (62%), Gaps = 6/148 (4%)
Query: 75 LRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-----SGPEVHDEKGIECMRVSGRLAAQV 129
+RP +S VP HI RP Y S P + S V++E+ I+ +R + L +
Sbjct: 63 VRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRKT 122
Query: 130 LEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSR 189
L+YA TLV PG+TTDEID+ VH+ II N AYPS L Y FPKS CTSVNE +CHGIPD R
Sbjct: 123 LDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYR 182
Query: 190 ALEDGDTINIDVTV-YLNVSIFLHATFY 216
L+ GD INID++V Y V L+ T++
Sbjct: 183 PLKSGDIINIDISVFYKGVHSDLNETYF 210
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 68/98 (69%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLN 206
FPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILD 104
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 68/98 (69%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLN 206
FPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILD 104
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 100
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 100
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 100
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 8 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 67
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 68 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 97
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 99
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 100
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 100
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 99
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 99
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 99
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTV 203
S+NE +CHGIP D++ L+DGD +NIDVTV
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTV 99
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE M SG L A V + T +KPGIT+ +I+ V I +G + +GY G+ + C
Sbjct: 10 IEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCC 69
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNVSI 209
S+N+ ICHG P + L+DGD I +D+ V L +I
Sbjct: 70 SINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAI 103
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
++ M +G + L K G++T E+D+ +I + GA PS LGY GFP S+C+
Sbjct: 40 LDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICS 99
Query: 176 SVNECICHGIPDSRA-LEDGDTINIDVTVYLN 206
SVN+ + HGIP + A L DGD ++ID L+
Sbjct: 100 SVNDQVVHGIPSATAVLADGDLVSIDCGAILD 131
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V E+ ++ ++ G + A+V KPGITT E+D ++ + GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLN 206
P C SVNE + HGIP R + +GD +NIDV+ N
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKN 99
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE M+ +G+ A L ++ PG T +++ V ++ P+ GYGG+ + C
Sbjct: 22 IEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCV 81
Query: 176 SVNECICHGIP-DSRALEDGDTINIDV 201
SVNE + HG+P + ++GD +++DV
Sbjct: 82 SVNEEVVHGLPLKEKVFKEGDIVSVDV 108
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI 154
DE+G E +RV+ +VLE A ++KPGI ++ + + +
Sbjct: 129 DERGKELVRVT----REVLEKAIKMIKPGIRLGDVSHCIQETV 167
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTS 176
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 177 VNECICHGIP---DSRALEDGDTINIDVTVYLN 206
+NE H P D+ L++GD + IDV V+++
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHID 88
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTS 176
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 177 VNECICHGIP---DSRALEDGDTINIDVTVYLN 206
+NE H P D+ L++GD + IDV V+++
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHID 88
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I+ ++ + ++A E+ + ++PG++ E+ + + GA S F V +
Sbjct: 136 IKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----FDIIVAS 190
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVY 204
+ + HG+ + +E GD + +D Y
Sbjct: 191 GLRSALPHGVASEKVIETGDFVTLDFGAY 219
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINID 200
+GA YPS + V + N CI H + + DGD + ID
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLID 260
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINID 200
+GA YPS + V + N CI H + + DGD + ID
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLID 260
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINID 200
+GA YPS + V + N CI H + + DGD + ID
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLID 260
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINID 200
+GA YPS + V + N CI H + + DGD + ID
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLID 260
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINID 200
+GA YPS + V + N CI H + + DGD + ID
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLID 260
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINID 200
+GA YPS + V + N CI H + + DGD + ID
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLID 260
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINID 200
+GA YPS + V + N CI H + + DGD + ID
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLID 260
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINID 200
+GA YPS + V + N CI H + + DGD + ID
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLID 260
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 168 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLN 206
FP S+ SVN C+CH P L++GD + ID+ V+++
Sbjct: 68 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVD 108
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 168 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLN 206
FP S+ SVN C+CH P L++GD + ID+ V+++
Sbjct: 75 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVD 115
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 168 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLN 206
FP S+ SVN C+CH P L++GD + ID+ V+++
Sbjct: 82 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVD 122
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 20/164 (12%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINI 199
+GA YPS + V + N CI H + + DGD + I
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLI 259
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 61 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 115
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNVSIF 210
S+N C H P D+ L+ D ID +++ I
Sbjct: 116 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRII 153
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 60 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 114
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNVSIF 210
S+N C H P D+ L+ D ID +++ I
Sbjct: 115 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRII 152
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNVSIF 210
S+N C H P D+ L+ D ID +++ I
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRII 261
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNVSIF 210
S+N C H P D+ L+ D ID +++ I
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRII 261
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 150 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 177
V ++ID G+Y + +GY G FP+S+ SV
Sbjct: 23 VSAVVIDPGSYTTNIGYSGSDFPQSILPSV 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,866,150
Number of Sequences: 62578
Number of extensions: 281640
Number of successful extensions: 618
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 62
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)