Query 027841
Match_columns 218
No_of_seqs 225 out of 1539
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 18:04:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027841.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2210-2214//hhsearch_pdb/027841hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuk_A Methionine aminopeptida 1.0 1 1 260.0 16.6 151 68-218 5-172 (337)
2 3s6b_A Methionine aminopeptida 1.0 1 1 257.2 17.7 151 68-218 56-212 (368)
3 2b3h_A Methionine aminopeptida 1.0 1 1 248.9 16.0 151 68-218 25-184 (329)
4 3pka_A Methionine aminopeptida 1.0 1 1 229.7 18.0 147 71-218 3-150 (285)
5 3fm3_A Methionine aminopeptida 1.0 1 1 190.0 13.8 112 104-218 33-149 (358)
6 3tb5_A Methionine aminopeptida 1.0 1 1 187.1 14.2 112 107-218 1-113 (264)
7 3mx6_A Methionine aminopeptida 1.0 1 1 183.2 13.8 113 106-218 4-117 (262)
8 1o0x_A Methionine aminopeptida 1.0 1 1 181.1 13.6 114 105-218 11-126 (262)
9 3tav_A Methionine aminopeptida 1.0 1 1 181.0 14.8 115 104-218 26-144 (286)
10 2gg2_A Methionine aminopeptida 1.0 1 1 179.6 13.6 112 107-218 1-115 (263)
No 1
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei}
Probab=1.00 E-value=1 Score=260.05 Aligned_cols=151 Identities=46% Similarity=0.759 Sum_probs=140.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------CCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99766667876569998899999999876678998----------------87799732599999999999999999999
Q 027841 68 PNRRRKRLRPGKVSPHRPVPDHIPRPPYVNSQKPI----------------GIVSGPEVHDEKGIECMRVSGRLAAQVLE 131 (218)
Q Consensus 68 ~~~~~~~l~~g~~s~~~~vp~~i~~p~Y~~~~~~~----------------~~~~~R~VKs~eEIe~mR~A~~ia~~~l~ 131 (218)
.|.|+|+||||++||++.||+||++|+|+...... .....|.|||++||+.||+||++++++++
T Consensus 5 ~~~~~g~~~p~~~sp~~~vP~~i~~p~y~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~VKs~~EI~~mR~A~~i~~~a~~ 84 (337)
T 4fuk_A 5 TFDFTGPLRPGKITPRRAVPSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKKTAEIQRIKTVCQLSREVLD 84 (337)
T ss_dssp CCCCCSSCCCCCCCCCCCCCTTSCCCTTSSSTTCCCHHHHHHTTCCCCCCCCTTTTCTTC--CHHHHHHHHHHHHHHHHH
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 76230155566679898798999999866378887742112446753224522220358999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEE-
Q ss_conf 9966427998899999999999998799989999899986245268984134589997658999799988347599789-
Q 027841 132 YAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNVSIF- 210 (218)
Q Consensus 132 ~v~~~ikpGvTe~EId~~v~~~i~~~Ga~ps~l~y~gFp~~Vctg~N~~i~HgiP~~r~Lq~GDiV~IDvgv~~~GY~a- 210 (218)
.+.+.++|||||.||+++++++++++|+++++++|.+||+++|+|.|++.||++|++++|++||+|++|+|+.++||++
T Consensus 85 ~~~~~ikpG~te~el~~~~~~~~~~~g~~~~~~~~~~fp~iv~~g~n~~~~H~~~~~~~l~~GD~v~iD~g~~~~GY~sD 164 (337)
T 4fuk_A 85 IATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCTSVNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGD 164 (337)
T ss_dssp HHHHHCCTTCBHHHHHHHHHHHHHHTTCEETTTTGGGCCSSSEEEETTEEECCCCCSCBCCTTCEEEEEEEEEETTEEEE
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCEEEE
T ss_conf 99987648988999999999999986897367887776866664652311478999741468987997245338988971
Q ss_pred EEEEEEEC
Q ss_conf 99989819
Q 027841 211 LHATFYHT 218 (218)
Q Consensus 211 ~sRT~~V~ 218 (218)
++|||+++
T Consensus 165 ~tRT~~vG 172 (337)
T 4fuk_A 165 LNETVFIG 172 (337)
T ss_dssp EEEEEESS
T ss_pred EEEEEEEC
T ss_conf 01257757
No 2
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum}
Probab=1.00 E-value=1 Score=257.15 Aligned_cols=151 Identities=46% Similarity=0.720 Sum_probs=143.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 997666678765699988999999998766789988-----779973259999999999999999999999664279988
Q 027841 68 PNRRRKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIG-----IVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGIT 142 (218)
Q Consensus 68 ~~~~~~~l~~g~~s~~~~vp~~i~~p~Y~~~~~~~~-----~~~~R~VKs~eEIe~mR~A~~ia~~~l~~v~~~ikpGvT 142 (218)
.|+|++.||||++||++.||+||++|+|+.++.+.. ....+.|||++||+.||+||++++++++.+.+.++||+|
T Consensus 56 ~~~~~~~~~~~~~~~~~~vp~~i~~p~y~~~~~~~~~~~~~~~~~~~IKs~~EIe~mR~A~~ia~~al~~~~~~ikpGvT 135 (368)
T 3s6b_A 56 NFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRKTLDYAHTLVSPGVT 135 (368)
T ss_dssp TCCCSSSCCCCCCCCCCCCCTTSCCCTTTTTSCCHHHHSCCCTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88757733665668998898678887534578980454313467763389999999999999999999999997038998
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEE-EEEEEEEC
Q ss_conf 99999999999998799989999899986245268984134589997658999799988347599789-99989819
Q 027841 143 TDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNVSIF-LHATFYHT 218 (218)
Q Consensus 143 e~EId~~v~~~i~~~Ga~ps~l~y~gFp~~Vctg~N~~i~HgiP~~r~Lq~GDiV~IDvgv~~~GY~a-~sRT~~V~ 218 (218)
|.||++.+++.+.++|+++++++|.+||++||+|.|+++||++|++++|++||+|+||+|+.++||++ ++|||+++
T Consensus 136 E~El~~~~~~~~~~~Ga~ps~l~y~~Fp~iv~sg~N~~i~H~~p~~r~L~~GDiV~iD~G~~~~GY~sDitRT~~vG 212 (368)
T 3s6b_A 136 TDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVG 212 (368)
T ss_dssp HHHHHHHHHHHHHHTTCEETTTTGGGCCSSEEEEETTEEECCCCCSCBCCTTCEEEEEEEEEETTEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEEEC
T ss_conf 99999999999998689346555567787678727655456899985566899899998689896999878999979
No 3
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Probab=1.00 E-value=1 Score=248.88 Aligned_cols=151 Identities=48% Similarity=0.781 Sum_probs=142.5
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC--CCCCC-C----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9976666787-656999889999999987667--89988-7----79973259999999999999999999999664279
Q 027841 68 PNRRRKRLRP-GKVSPHRPVPDHIPRPPYVNS--QKPIG-I----VSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKP 139 (218)
Q Consensus 68 ~~~~~~~l~~-g~~s~~~~vp~~i~~p~Y~~~--~~~~~-~----~~~R~VKs~eEIe~mR~A~~ia~~~l~~v~~~ikp 139 (218)
+|.|++.++| |+++|.+.||++|++|+|+.. +.++. . ..++.|||++||+.||+|+++++++++.+.+.++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~p~~i~~p~y~~~~~~~~~~~~~~~~~~~~~iKs~~EI~~mR~A~~ia~~al~~~~~~i~p 104 (329)
T 2b3h_A 25 PYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKP 104 (329)
T ss_dssp -CCCSSSCCCCCCCCCCCCCCTTSCCCGGGGSTTCCCHHHHHTTTCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 86557755879864876679836577122025568771122124446540389999999999999999999999987117
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEE-EEEEEEEC
Q ss_conf 98899999999999998799989999899986245268984134589997658999799988347599789-99989819
Q 027841 140 GITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNVSIF-LHATFYHT 218 (218)
Q Consensus 140 GvTe~EId~~v~~~i~~~Ga~ps~l~y~gFp~~Vctg~N~~i~HgiP~~r~Lq~GDiV~IDvgv~~~GY~a-~sRT~~V~ 218 (218)
|+||.||++.+++.+.++|+++++++|.+||+++|+|+|+++||++|++++|++||+|++|+|+.++||++ ++|||+++
T Consensus 105 Gvte~el~~~~~~~~~~~G~~~~~~~y~~fp~iv~sg~n~~~~H~~p~~~~L~~GDiv~iD~G~~~~GY~sD~tRT~~vG 184 (329)
T 2b3h_A 105 GVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVG 184 (329)
T ss_dssp TCBHHHHHHHHHHHHHHTTCEETTTTGGGCCSSSEEEETTEEECCCCCSCBCCTTCEEEEEEEEEETTEEEEEEEEEECS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEEEC
T ss_conf 98299999999999998689256555567897478668987677898875778999899986589998998427899958
No 4
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A
Probab=1.00 E-value=1 Score=229.74 Aligned_cols=147 Identities=54% Similarity=0.869 Sum_probs=139.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 66667876569998899999999876678998877997325999999999999999999999966427998899999999
Q 027841 71 RRKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAV 150 (218)
Q Consensus 71 ~~~~l~~g~~s~~~~vp~~i~~p~Y~~~~~~~~~~~~R~VKs~eEIe~mR~A~~ia~~~l~~v~~~ikpGvTe~EId~~v 150 (218)
.++++||+.+||.+.||+||++|+|+..+.+.. ..+|.+||++||+.||+|+++++++++.+.+.++||+||.||++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~R~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~el~~~~ 81 (285)
T 3pka_A 3 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQE-GSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIA 81 (285)
T ss_dssp CCCCCCCCCCCCCCCCCTTSCCCTTTTSSSCSC-SCSCSBCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTCBHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 778886643588887865578986445678875-4434218999999999999999999999997668999499999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEE-EEEEEEEC
Q ss_conf 999998799989999899986245268984134589997658999799988347599789-99989819
Q 027841 151 HQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNVSIF-LHATFYHT 218 (218)
Q Consensus 151 ~~~i~~~Ga~ps~l~y~gFp~~Vctg~N~~i~HgiP~~r~Lq~GDiV~IDvgv~~~GY~a-~sRT~~V~ 218 (218)
++.+.++|+++++++|.+|++++|+|.|++.+|+.|++++|++||+|++|+|+.++||++ ++|||+++
T Consensus 82 ~~~~~~~G~~~~~~~~~~f~~iv~~g~n~~~~H~~p~~~~l~~Gd~v~iD~G~~~~GY~sD~tRT~~vG 150 (285)
T 3pka_A 82 HEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAG 150 (285)
T ss_dssp HHHHHHTTCEETTTTGGGCCSSSEEEETTEEECCCCCSCBCCTTCEEEEEEEEEETTEEEEEEEEEECS
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECC
T ss_conf 999998699655345568887348521114345899874167999899998789899999778999939
No 5
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A*
Probab=1.00 E-value=1 Score=190.01 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=104.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 77997325999999999999999999999966427998899999999999998799989999899986245268984134
Q 027841 104 IVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICH 183 (218)
Q Consensus 104 ~~~~R~VKs~eEIe~mR~A~~ia~~~l~~v~~~ikpGvTe~EId~~v~~~i~~~Ga~ps~l~y~gFp~~Vctg~N~~i~H 183 (218)
...++.+|+++||+.||+||+|++++++.+.+.++|||||.||++++++++++.|+.+++.+| +|| +|+|+|+++||
T Consensus 33 ~~~~~~~~~~d~l~~~R~Aa~I~~~v~~~~~~~ikpG~t~~el~~~~e~~i~~~~~~~~~~g~-~FP--~ciSvN~~v~H 109 (358)
T 3fm3_A 33 NMEIENFTESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNGI-GFP--AGMSMNSCAAH 109 (358)
T ss_dssp SCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHHHTTTSGGGGE-EEE--EEEEETTEEEC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CCC--CEEEECCEEEE
T ss_conf 788874589999999999999999999999976879995999999999999984677766688-888--17764788775
Q ss_pred CCC----CCCCCCCCCEEEEEEEEEECCEEE-EEEEEEEC
Q ss_conf 589----997658999799988347599789-99989819
Q 027841 184 GIP----DSRALEDGDTINIDVTVYLNVSIF-LHATFYHT 218 (218)
Q Consensus 184 giP----~~r~Lq~GDiV~IDvgv~~~GY~a-~sRT~~V~ 218 (218)
|+| ++++|++||+|+||+|+.++||++ ++|||.++
T Consensus 110 g~P~~~~~~~~L~~GDiV~ID~G~~~dGY~sD~arT~~vg 149 (358)
T 3fm3_A 110 YTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFK 149 (358)
T ss_dssp CCCCTTCCCCBCCTTCEEEEEEEEEETTEEEEEEEEEECC
T ss_pred CCCCCCCCCEEECCCCEEEEEEEEEECCEEEEEEEECCCC
T ss_conf 6889998873843899899986178999999877862445
No 6
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=187.13 Aligned_cols=112 Identities=34% Similarity=0.562 Sum_probs=109.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 97325999999999999999999999966427998899999999999998799989999899986245268984134589
Q 027841 107 GPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP 186 (218)
Q Consensus 107 ~R~VKs~eEIe~mR~A~~ia~~~l~~v~~~ikpGvTe~EId~~v~~~i~~~Ga~ps~l~y~gFp~~Vctg~N~~i~HgiP 186 (218)
||.|||++||+.||+|+++++++++.+.+.++||+||.||++.++..+.++|+.+++.+|.+|+.++|+|.|++.+|+.|
T Consensus 1 M~~IKs~~EI~~mr~A~~i~~~a~~~~~~~ikpG~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~v~~g~~~~~~H~~~ 80 (264)
T 3tb5_A 1 MITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCCSINDEICHGFP 80 (264)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHHTTCEETTTTGGGCCCSEEEEETTEEECCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 98728999999999999999999999998674899799999999999998599766422257775048777544457898
Q ss_pred CCCCCCCCCEEEEEEEEEECCEEE-EEEEEEEC
Q ss_conf 997658999799988347599789-99989819
Q 027841 187 DSRALEDGDTINIDVTVYLNVSIF-LHATFYHT 218 (218)
Q Consensus 187 ~~r~Lq~GDiV~IDvgv~~~GY~a-~sRT~~V~ 218 (218)
++++|++||+|++|+|+.++||++ ++|||+++
T Consensus 81 ~~~~l~~Gdlv~iD~g~~~~GY~sD~tRT~~vG 113 (264)
T 3tb5_A 81 RKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVG 113 (264)
T ss_dssp CSCBCCTTCEEEEEEEEEETTEEEEEEEEEECS
T ss_pred CCCCCCCCCEEEEECCCEECCEEEECCCCCCCC
T ss_conf 873545797799921420466665514660038
No 7
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A
Probab=1.00 E-value=1 Score=183.23 Aligned_cols=113 Identities=42% Similarity=0.767 Sum_probs=109.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 99732599999999999999999999996642799889999999999999879998999989998624526898413458
Q 027841 106 SGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGI 185 (218)
Q Consensus 106 ~~R~VKs~eEIe~mR~A~~ia~~~l~~v~~~ikpGvTe~EId~~v~~~i~~~Ga~ps~l~y~gFp~~Vctg~N~~i~Hgi 185 (218)
+++.|||++||+.||+|+++++++++.+.+.++||+||.||++.+++.+.++|+++++++|.+||+++|+|.|++.+|+.
T Consensus 4 ~~~~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~pG~tE~el~~~~~~~~~~~G~~~~~~~~~~f~~iv~~g~n~~~~H~~ 83 (262)
T 3mx6_A 4 SMIKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSINHVVCHGI 83 (262)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHGGGCCTTCBHHHHHHHHHHHHHHTTCEETTTTGGGCCSSSEEEETTEEECCC
T ss_pred CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 73143799999999999999999999999876799969999999999999849922545667878524703664344788
Q ss_pred CCCCCCCCCCEEEEEEEEEECCEEE-EEEEEEEC
Q ss_conf 9997658999799988347599789-99989819
Q 027841 186 PDSRALEDGDTINIDVTVYLNVSIF-LHATFYHT 218 (218)
Q Consensus 186 P~~r~Lq~GDiV~IDvgv~~~GY~a-~sRT~~V~ 218 (218)
|++++|++||+|++|+|+.++||++ ++|||+++
T Consensus 84 p~~~~l~~Gd~v~iD~G~~~~GY~sD~tRT~~vG 117 (262)
T 3mx6_A 84 PNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVG 117 (262)
T ss_dssp CCSCBCCTTCEEEEEEEEEETTEEEEEEEEEECS
T ss_pred CCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECC
T ss_conf 8872457999899984289898999878999938
No 8
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1
Probab=1.00 E-value=1 Score=181.11 Aligned_cols=114 Identities=25% Similarity=0.394 Sum_probs=109.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 79973259999999999999999999999664279988999999999999987999899998999862452689841345
Q 027841 105 VSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG 184 (218)
Q Consensus 105 ~~~R~VKs~eEIe~mR~A~~ia~~~l~~v~~~ikpGvTe~EId~~v~~~i~~~Ga~ps~l~y~gFp~~Vctg~N~~i~Hg 184 (218)
..+|.+||++||+.||+|++++.++++.+.+.++||+||.||++.+++.+.++|+.+++.+|.+||+++|+|.|++++|+
T Consensus 11 ~~~R~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~f~~~v~~g~n~~~~H~ 90 (262)
T 1o0x_A 11 HHMIRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVNEEVVHG 90 (262)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHHHHHGGGGCSTTCBHHHHHHHHHHHHHHHTCEESSTTGGGCCCSEEEEETTBCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 34414599999999999999999999999987789982999999999999986995322345677763584465345588
Q ss_pred CCCCCC-CCCCCEEEEEEEEEECCEEE-EEEEEEEC
Q ss_conf 899976-58999799988347599789-99989819
Q 027841 185 IPDSRA-LEDGDTINIDVTVYLNVSIF-LHATFYHT 218 (218)
Q Consensus 185 iP~~r~-Lq~GDiV~IDvgv~~~GY~a-~sRT~~V~ 218 (218)
.|++++ |++||+|++|+|+.++||++ ++|||+++
T Consensus 91 ~p~~~~~l~~Gd~v~iD~G~~~~GY~sD~tRT~~vG 126 (262)
T 1o0x_A 91 LPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVG 126 (262)
T ss_dssp CCCTTCBCCTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred CCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECC
T ss_conf 988875248999899988789898999877999989
No 9
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus}
Probab=1.00 E-value=1 Score=180.97 Aligned_cols=115 Identities=33% Similarity=0.508 Sum_probs=110.0
Q ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 77997--3259999999999999999999999664279988999999999999987999899998999862452689841
Q 027841 104 IVSGP--EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181 (218)
Q Consensus 104 ~~~~R--~VKs~eEIe~mR~A~~ia~~~l~~v~~~ikpGvTe~EId~~v~~~i~~~Ga~ps~l~y~gFp~~Vctg~N~~i 181 (218)
+...| .|||++||+.||+|+++++++++.+.+.++||+||.||++.+++.+.++|+++++++|.+||+++|+|.|++.
T Consensus 26 i~~~R~~~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~f~~iv~~g~n~~~ 105 (286)
T 3tav_A 26 FGRKKTVEQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICSSVNDQV 105 (286)
T ss_dssp TCSCSBCCBCCHHHHHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHHTTCEETTTTGGGCCSSEEEEETTBC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 98764034599999999999999999999999986658993999999999999985993443466787882487267420
Q ss_pred CCCCCC-CCCCCCCCEEEEEEEEEECCEEE-EEEEEEEC
Q ss_conf 345899-97658999799988347599789-99989819
Q 027841 182 CHGIPD-SRALEDGDTINIDVTVYLNVSIF-LHATFYHT 218 (218)
Q Consensus 182 ~HgiP~-~r~Lq~GDiV~IDvgv~~~GY~a-~sRT~~V~ 218 (218)
+|+.|+ +++|++||+|++|+|+.++||++ ++|||+++
T Consensus 106 ~H~~p~~~~~l~~Gd~v~iD~G~~~~GY~sD~tRT~~vG 144 (286)
T 3tav_A 106 VHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVG 144 (286)
T ss_dssp SCCCCCTTCBCCTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECC
T ss_conf 078898785157999899998789898998657999989
No 10
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ...
Probab=1.00 E-value=1 Score=179.64 Aligned_cols=112 Identities=45% Similarity=0.724 Sum_probs=107.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 97325999999999999999999999966427998899999999999-99879998999989998624526898413458
Q 027841 107 GPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQM-IIDNGAYPSPLGYGGFPKSVCTSVNECICHGI 185 (218)
Q Consensus 107 ~R~VKs~eEIe~mR~A~~ia~~~l~~v~~~ikpGvTe~EId~~v~~~-i~~~Ga~ps~l~y~gFp~~Vctg~N~~i~Hgi 185 (218)
+|.+||++||+.||+|++++.++++.+.+.++||+||.||++.+++. +.++|+++++++|.+|++++|+|.|++.+|+.
T Consensus 1 m~~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~te~el~~~~~~~~~~~~g~~~~~~~~~~f~~iv~~g~n~~~~H~~ 80 (263)
T 2gg2_A 1 AISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGI 80 (263)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHGGGCSTTCBHHHHHHHHHHHHHHTSCCEESSTTGGGCCSSSEEEETTEEECCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 94328999999999999999999999997767998199999999999999809914413456777615713665444789
Q ss_pred CCC-CCCCCCCEEEEEEEEEECCEEE-EEEEEEEC
Q ss_conf 999-7658999799988347599789-99989819
Q 027841 186 PDS-RALEDGDTINIDVTVYLNVSIF-LHATFYHT 218 (218)
Q Consensus 186 P~~-r~Lq~GDiV~IDvgv~~~GY~a-~sRT~~V~ 218 (218)
|++ ++|++||+|++|+|+.++||++ ++|||+++
T Consensus 81 p~~~~~l~~gd~v~iD~G~~~~gy~sD~tRT~~vG 115 (263)
T 2gg2_A 81 PDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 115 (263)
T ss_dssp CCTTCBCCTTCEEEEEEEEEETTEEEEEEEEEECS
T ss_pred CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECC
T ss_conf 99875769999899988788899988888999938
Done!