BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027842
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 135/197 (68%), Gaps = 4/197 (2%)
Query: 25 DPSPLQDFCVADLQ-KPVLVNGYACKDPMLVKAEDFYFSG-LNREGNTSNPFGSIATRIT 82
DP PLQDFCVADL K V VNG+ CK PM +DF FS L + GNTS P GS T +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 83 VTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTS-NPENRLFT 141
V + PG NTLG+S+AR DFAPGG NPPH HPRATEI V+KG L G + S + N+L++
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 142 KVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTVPNTVFGSHPKISTDILA 201
+V+R G+ FV P+G++HFQ N+G+ +A + S SQNPG+V VP T+FGS P I T +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 202 KAFQVDQFRIQQIQKNF 218
KA +V+ ++ ++ F
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 134/197 (68%), Gaps = 4/197 (2%)
Query: 25 DPSPLQDFCVADLQ-KPVLVNGYACKDPMLVKAEDFYFSG-LNREGNTSNPFGSIATRIT 82
DP PLQDFCVADL K V VNG+ CK PM +DF FS L + GNTS P GS T +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 83 VTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTS-NPENRLFT 141
V + PG NTLG+S+ R DFAPGG NPPH HPRATEI V+KG L G + S + N+L++
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 142 KVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTVPNTVFGSHPKISTDILA 201
+V+R G+ FV P+G++HFQ N+G+ +A + S SQNPG+V VP T+FGS P I T +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 202 KAFQVDQFRIQQIQKNF 218
KA +V+ ++ ++ F
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 134/197 (68%), Gaps = 4/197 (2%)
Query: 25 DPSPLQDFCVADLQ-KPVLVNGYACKDPMLVKAEDFYFSG-LNREGNTSNPFGSIATRIT 82
DP PLQDFCVADL K V VNG+ CK PM +DF FS L + GNTS P GS T +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 83 VTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTS-NPENRLFT 141
V + PG NTLG+S+ R DFAPGG NPPH HPRATEI V+KG L G + S + N+L++
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 142 KVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTVPNTVFGSHPKISTDILA 201
+V+R G+ FV P+G++HFQ N+G+ +A + S SQNPG+V VP T+FGS P I T +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 202 KAFQVDQFRIQQIQKNF 218
KA +V+ ++ ++ F
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 75 GSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSN 134
G I+T ++T +P G+S G+ PH++ A ++ V +G V
Sbjct: 348 GRISTLNSLT-LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQ 406
Query: 135 PENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTVPNTVFGSHPK 194
N +F LR G L V P+ + ++ G + + + + V + VF +
Sbjct: 407 -GNAVFDGELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVFRA--- 460
Query: 195 ISTDILAKAFQVDQFRIQQIQ 215
I +++L+ ++ + Q +++Q++
Sbjct: 461 IPSEVLSNSYNLGQSQVRQLK 481
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 75 GSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSN 134
G I+T ++T +P G+S G+ PH++ A ++ V +G V
Sbjct: 349 GRISTLNSLT-LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQ 407
Query: 135 PENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTVPNTVFGSHPK 194
N +F LR G L V P+ + ++ G + + + + V + VF +
Sbjct: 408 -GNAVFDGELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVFRA--- 461
Query: 195 ISTDILAKAFQVDQFRIQQIQ 215
I +++L+ ++ + Q +++Q++
Sbjct: 462 IPSEVLSNSYNLGQSQVRQLK 482
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 82 TVTQVPG-FNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLF 140
+ + PG FN G I PG + H+HP A E VL G ++ S E +
Sbjct: 224 SAKEFPGSFNMTGALI---HLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFAS--EGKAS 278
Query: 141 TKVLRPGDLFVAPKGMIHFQKN 162
L+ GD+ PKG H +N
Sbjct: 279 VSRLQQGDVGYVPKGYGHAIRN 300
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 82 TVTQVPGFN---TLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENR 138
T QV +N + G++ PG + H+H A E V++G ++PE +
Sbjct: 37 TTKQVGTYNFPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTR--ITLTSPEGK 94
Query: 139 LFTKVLRPGDLFVAPKGMIHFQKNIG 164
+ + G L+ P+G H + IG
Sbjct: 95 VEIADVDKGGLWYFPRGWGHSIEGIG 120
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAP 153
I+ A PG + H+HP E + G S+ R F + GD+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 154 KGMIHFQKNIGRGKAVALASLG-------SQNPGVVTVPNTVFGSHPKIS---TDILAK 202
M H+ +NIG V L S N + +P T +H + TD+L+K
Sbjct: 315 FAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSK 373
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAP 153
I+ A PG + H+HP E + G S+ R F + GD+ P
Sbjct: 255 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 312
Query: 154 KGMIHFQKNIGRGKAVALASLG-------SQNPGVVTVPNTVFGSHPKIS---TDILAK 202
M H+ +NIG V L S N + +P T +H + TD+L+K
Sbjct: 313 FAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSK 371
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAP 153
I+ A PG + H+HP E + G S+ R F + GD+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 154 KGMIHFQKNIGRGKAVALASLG-------SQNPGVVTVPNTVFGSHPKIS---TDILAK 202
M H+ +NIG V L S N + +P T +H + TD+L+K
Sbjct: 315 FAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSK 373
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAP 153
I+ A PG + H+HP E + G S+ R F + GD+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 154 KGMIHFQKNIGRGKAVALASLG-------SQNPGVVTVPNTVFGSHPKIS---TDILAK 202
M H+ +NIG V L S N + +P T +H + TD+L+K
Sbjct: 315 FAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSK 373
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAP 153
I+ A PG + H+HP E + G S+ R F + GD+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 154 KGMIHFQKNIGRGKAVALASLG-------SQNPGVVTVPNTVFGSHPKIS---TDILAK 202
M H+ +NIG V L S N + +P T +H + TD+L+K
Sbjct: 315 FAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSK 373
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAP 153
I+ A PG + H+HP E + G S+ R F + GD+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 314
Query: 154 KGMIHFQKNIGRGKAVALASLG-------SQNPGVVTVPNTVFGSHPKIS---TDILAK 202
M H+ +NIG V L S N + +P T +H + TD+L+K
Sbjct: 315 FAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSK 373
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAP 153
I+ A PG + H+HP E + G S+ R F + GD+ P
Sbjct: 252 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFN--YQAGDVGYVP 309
Query: 154 KGMIHFQKNIGRGKAVALASLG-------SQNPGVVTVPNTVFGSHPKIS---TDILAK 202
M H+ +NIG V L S N + +P T +H + TD+L+K
Sbjct: 310 FAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSK 368
>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|B Chain B, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|C Chain C, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|D Chain D, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|E Chain E, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|F Chain F, Crystal Structure Of Major Peanut Allergen Ara H 1
Length = 418
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 25/113 (22%)
Query: 66 REG--NTSNPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLK 123
REG + SN FG + + P L + + + G + PHF+ +A I+ V K
Sbjct: 232 REGEPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTXVEIKEGALVLPHFNSKAMVIVVVNK 291
Query: 124 GTLEAGFVT-----------------------SNPENRLFTKVLRPGDLFVAP 153
GT V SN E R +T L+ GD+F+ P
Sbjct: 292 GTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMP 344
>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7E|B Chain B, Crystal Structure Of Ara H 1
pdb|3S7I|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7I|B Chain B, Crystal Structure Of Ara H 1
Length = 418
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 25/113 (22%)
Query: 66 REG--NTSNPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLK 123
REG + SN FG + + P L + + + G + PHF+ +A I+ V K
Sbjct: 233 REGEPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNK 292
Query: 124 GTLEAGFVT-----------------------SNPENRLFTKVLRPGDLFVAP 153
GT V SN E R +T L+ GD+F+ P
Sbjct: 293 GTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMP 345
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 63 GLNREGNTSNP-FGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTV 121
G NR + NP GS+ T + + LG+S + + PH++ A I+
Sbjct: 341 GRNRSPDIYNPQAGSLKTANELNLLI-LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYA 399
Query: 122 LKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPK 154
L+G V SN NR++ + L+ G + V P+
Sbjct: 400 LRGRAHVQVVDSNG-NRVYDEELQEGHVLVVPQ 431
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAP 153
I+ A PG H+HP E + G S+ R F + GD+ P
Sbjct: 257 IASALVTVEPGAXRELHWHPNTHEWQYYISGKARXTVFASDGHARTFN--YQAGDVGYVP 314
Query: 154 KGMIHFQKNIGRGKAVALASLG-------SQNPGVVTVPNTVFGSHPKIS---TDILAK 202
H+ +NIG V L S N + +P T +H + TD+L+K
Sbjct: 315 FAXGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAXLPETFVQAHLDLGKDFTDVLSK 373
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 72 NPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFV 131
N FG++ R N+L + I+ + G + PH++ +A IL V +G V
Sbjct: 224 NEFGNLTERTD-------NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELV 276
Query: 132 -----TSNPENRLFTKVLRPGDLFVAP 153
E + L D+FV P
Sbjct: 277 GPKGNKETLEYESYRAELSKDDVFVIP 303
>pdb|3HT1|A Chain A, 1.2a Structure Of The Polyketide Cyclase Remf From
Streptomyces Resistomycificus
Length = 145
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 100 DFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIH 158
+ +P G PPHFH EI VL+G++ G V + + R T+ + PG+ P+G H
Sbjct: 45 EVSPNGSTPPHFHEWEHEIY-VLEGSM--GLVLPD-QGR--TEEVGPGEAIFIPRGEPH 97
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 68 GNTSNPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRA---TEILTVLKG 124
G +P G++ I GF TL R G V P A E L L+G
Sbjct: 11 GLPEDPHGAVGLPIYAVAAYGFKTLEEGQERFATGEGYVYARQKDPTAKALEERLKALEG 70
Query: 125 TLEAGFVTSNPENRLFTKVL--RPGDLFVAPKGMIHFQKNIG 164
LEA + S + RPGD VA KG+ F + IG
Sbjct: 71 ALEAVVLASGQAATFAALLALLRPGDEVVAAKGL--FGQTIG 110
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 110 HFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIH 158
H H E+ V +GTL+ F N L+ G+ +V PKG+ H
Sbjct: 45 HEHADTDEVFIVXEGTLQIAFRDQNI-------TLQAGEXYVIPKGVEH 86
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 72 NPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFV 131
NP T T P + L +S + PH++ A I+ L G V
Sbjct: 316 NPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV 375
Query: 132 TSNPENRLFTKVLRPGDLFVAPKGMI 157
N E R+F L+ G + + P+ +
Sbjct: 376 NCNGE-RVFDGELQEGRVLIVPQNFV 400
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 72 NPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFV 131
NP T T P + L +S + PH++ A I+ L G V
Sbjct: 316 NPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV 375
Query: 132 TSNPENRLFTKVLRPGDLFVAPKGMI 157
N E R+F L+ G + + P+ +
Sbjct: 376 NCNGE-RVFDGELQEGRVLIVPQNFV 400
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 72 NPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFV 131
NP T T P + L +S + PH++ A I+ L G V
Sbjct: 316 NPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV 375
Query: 132 TSNPENRLFTKVLRPGDLFVAPKGMI 157
N E R+F L+ G + + P+ +
Sbjct: 376 NCNGE-RVFDGELQEGRVLIVPQNFV 400
>pdb|1K3V|A Chain A, Porcine Parvovirus Capsid
Length = 579
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 105 GVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLF--------VAPKGM 156
+NPP + ++ +I ++ L + + EN + +LR GD F P +
Sbjct: 217 NLNPPTYTGQSQQITDSIQTGLHSDIMFYTIENAVPIHLLRTGDEFSTGIYHFDTKPLKL 276
Query: 157 IH-FQKNIGRGKAVAL----ASLGSQNPGVVTVPNTVFGSHPKIS 196
H +Q N G L + G Q+PG + NT G H I+
Sbjct: 277 THSWQTNRSLGLPPKLLTEPTTEGDQHPGTLPAANTRKGYHQTIN 321
>pdb|3HT2|A Chain A, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
pdb|3HT2|C Chain C, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
Length = 145
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 100 DFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIH 158
+ +P G PPHFH EI VL+G+ G V + + R T+ + PG+ P+G H
Sbjct: 45 EVSPNGSTPPHFHEWEHEIY-VLEGS--XGLVLPD-QGR--TEEVGPGEAIFIPRGEPH 97
>pdb|3H8U|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
pdb|3H8U|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
Length = 125
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 103 PGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKN 162
PG H HP + TV+ G E + N + T L+ GD+ +A G +H N
Sbjct: 48 PGQEIASHVHPHGQDTWTVISGEAE-----YHQGNGIVTH-LKAGDIAIAKPGQVHGAXN 101
Query: 163 IG 164
G
Sbjct: 102 SG 103
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 54 VKAEDFYFSGLNREGNTSNPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHP 113
+ ++D F+ +R+ SN +G + IT + L I + G + PH++
Sbjct: 2 LSSQDKPFNLRSRDPIYSNNYGKL-YEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNS 60
Query: 114 RATEILTVLKGTLEAGFV---------TSNPENRLFTKVLRPGDLFVAP 153
RAT IL +G E V + + R + L GD+ V P
Sbjct: 61 RATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIP 109
>pdb|4E2G|A Chain A, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|B Chain B, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|C Chain C, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|D Chain D, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|E Chain E, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|F Chain F, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|G Chain G, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|H Chain H, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
Length = 126
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 86 VPGFNTLGIS-----IARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLF 140
+PGF I + P P H HP + L+GTLE +T E
Sbjct: 28 LPGFAXQAIQGKNLXLNWVRIEPNTEXPAHEHPH-EQAGVXLEGTLE---LTIGEE---- 79
Query: 141 TKVLRPGDLFVAPKGMIHFQKNIGRG 166
T+VLRPG + P G+ H + G
Sbjct: 80 TRVLRPGXAYTIPGGVRHRARTFEDG 105
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 54 VKAEDFYFSGLNREGNTSNPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHP 113
+ ++D F+ +R+ SN +G + IT + L I + G + PH++
Sbjct: 242 LSSQDKPFNLRSRDPIYSNNYGKL-YEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNS 300
Query: 114 RATEILTVLKGTLEAGFV---------TSNPENRLFTKVLRPGDLFVAP 153
RAT IL +G E V + + R + L GD+ V P
Sbjct: 301 RATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIP 349
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 82 TVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFT 141
+V +P +T+ I++ APG +P H H A ++ AG T N + +F
Sbjct: 370 SVYPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVR------SAGSTTYNYNDPIFR 423
Query: 142 KVLRPGDLFVAPKGMIHFQKN 162
V+ G I FQ +
Sbjct: 424 DVVSTGTPAAGDNVTIRFQTD 444
>pdb|3CJX|A Chain A, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|B Chain B, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|C Chain C, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|D Chain D, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|E Chain E, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|F Chain F, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|G Chain G, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|H Chain H, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
Length = 165
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 93 GISIARADFAPGGVNPPHFHPRATEILTV 121
G+ + RA FAPG P HFH T+
Sbjct: 42 GLXVXRASFAPGLTLPLHFHTGTVHXYTI 70
>pdb|3ZTV|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|B Chain B, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
Length = 579
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 71 SNPFGSIATR-ITVTQVPGFNTLGISI-----ARADFAPGGV 106
SNP GSIATR I T T+ ++I RAD PG V
Sbjct: 380 SNPEGSIATRFIAETMYNELKTVDLTIQNAGGVRADILPGNV 421
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 5/147 (3%)
Query: 72 NPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFV 131
NP +T +P L +S + PH++ A I+ LKG V
Sbjct: 336 NPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVV 395
Query: 132 TSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIG-RGKAVALASLGSQNPGVVTVPNTVFG 190
N N +F L G P+ K++ R VA + + ++V
Sbjct: 396 NCNG-NTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSVIN 454
Query: 191 SHPKISTDILAKAFQVDQFRIQQIQKN 217
+ P D++A F + + +Q++ N
Sbjct: 455 NLP---LDVVAATFNLQRNEARQLKSN 478
>pdb|4DIQ|A Chain A, Crystal Structure Of Human No66
pdb|4DIQ|B Chain B, Crystal Structure Of Human No66
Length = 489
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 111 FHPRA-TEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIH 158
+ PRA TE L + T F + + VL PGDL P+G IH
Sbjct: 201 YRPRAPTEELAL---TSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIH 246
>pdb|4E4H|A Chain A, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|B Chain B, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|C Chain C, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|D Chain D, Crystal Structure Of Histone Demethylase No66
Length = 463
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 111 FHPRA-TEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIH 158
+ PRA TE L + T F + + VL PGDL P+G IH
Sbjct: 182 YRPRAPTEELAL---TSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIH 227
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 120 TVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQN 178
T L+ + AG + ++ + R GDL V P G+ H+ N G+ V + ++N
Sbjct: 109 TDLRRSQSAGSAFKDQHQKI--RPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRN 165
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 142 KVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQN 178
+ LR GD+F P G+ H+ N G VA+ + + N
Sbjct: 132 RHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,334,806
Number of Sequences: 62578
Number of extensions: 257751
Number of successful extensions: 645
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 47
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)