Query 027842
Match_columns 218
No_of_seqs 355 out of 1707
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 16:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 2.3E-26 4.9E-31 207.5 18.1 159 48-216 203-361 (367)
2 PLN00212 glutelin; Provisional 99.9 1.7E-23 3.7E-28 193.7 17.8 145 68-217 322-468 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 6.2E-23 1.4E-27 185.2 17.9 151 53-217 32-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 7E-22 1.5E-26 156.4 10.6 127 70-211 9-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.8 7.8E-20 1.7E-24 145.0 17.3 135 72-211 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 4.6E-18 9.9E-23 157.8 20.2 140 72-216 59-248 (493)
7 COG2140 Thermophilic glucose-6 99.8 7.8E-18 1.7E-22 139.5 12.1 149 55-217 49-199 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 4.3E-14 9.3E-19 97.7 7.1 70 98-174 2-71 (71)
9 COG0662 {ManC} Mannose-6-phosp 99.4 1.5E-12 3.2E-17 101.2 12.1 83 92-181 34-116 (127)
10 PRK13290 ectC L-ectoine syntha 99.4 1.5E-12 3.3E-17 101.1 12.0 81 92-181 33-114 (125)
11 COG1917 Uncharacterized conser 99.4 2.9E-12 6.3E-17 99.5 12.3 86 84-176 33-118 (131)
12 PRK04190 glucose-6-phosphate i 99.3 4.3E-11 9.4E-16 99.2 14.7 97 78-177 53-157 (191)
13 PRK11171 hypothetical protein; 99.3 1.3E-10 2.9E-15 100.9 14.4 78 91-175 58-136 (266)
14 PRK09943 DNA-binding transcrip 99.3 7.3E-11 1.6E-15 97.0 11.9 75 93-175 106-181 (185)
15 TIGR01479 GMP_PMI mannose-1-ph 99.2 1E-10 2.2E-15 109.1 12.5 78 93-177 375-452 (468)
16 PRK15460 cpsB mannose-1-phosph 99.2 1E-10 2.2E-15 109.2 12.2 77 93-176 384-460 (478)
17 COG3837 Uncharacterized conser 99.2 1.2E-10 2.6E-15 92.4 10.2 85 84-177 34-121 (161)
18 PF01050 MannoseP_isomer: Mann 99.2 4.3E-10 9.3E-15 90.0 12.5 127 29-175 3-137 (151)
19 COG4101 Predicted mannose-6-ph 99.2 2.2E-10 4.8E-15 87.0 9.6 83 93-180 45-128 (142)
20 TIGR03214 ura-cupin putative a 99.1 3.7E-09 8E-14 91.7 13.7 76 93-175 57-133 (260)
21 PRK11171 hypothetical protein; 99.0 4.4E-09 9.5E-14 91.5 13.1 76 93-175 183-258 (266)
22 TIGR03214 ura-cupin putative a 99.0 2.7E-09 5.8E-14 92.5 11.0 74 93-173 178-251 (260)
23 PF02041 Auxin_BP: Auxin bindi 99.0 9.8E-09 2.1E-13 81.0 11.0 99 87-188 39-140 (167)
24 PRK13264 3-hydroxyanthranilate 98.7 8.4E-08 1.8E-12 78.2 9.4 67 101-173 41-107 (177)
25 TIGR03037 anthran_nbaC 3-hydro 98.7 1E-07 2.2E-12 76.6 9.7 66 102-173 36-101 (159)
26 PF06560 GPI: Glucose-6-phosph 98.7 2.9E-07 6.2E-12 75.7 11.5 84 91-176 47-146 (182)
27 PF11699 CENP-C_C: Mif2/CENP-C 98.5 1.7E-06 3.6E-11 62.8 9.8 73 93-173 11-84 (85)
28 PF02311 AraC_binding: AraC-li 98.5 6.4E-07 1.4E-11 67.7 7.4 64 103-174 12-75 (136)
29 PRK15457 ethanolamine utilizat 98.4 4.5E-06 9.8E-11 70.7 11.6 70 93-174 156-225 (233)
30 PF12973 Cupin_7: ChrR Cupin-l 98.4 4.8E-07 1E-11 66.0 5.1 66 93-172 23-88 (91)
31 TIGR02451 anti_sig_ChrR anti-s 98.4 1.6E-06 3.6E-11 73.2 8.0 72 94-177 127-198 (215)
32 PRK10371 DNA-binding transcrip 98.3 2.3E-06 5E-11 75.5 8.9 59 99-165 31-89 (302)
33 PF06339 Ectoine_synth: Ectoin 98.2 1.7E-05 3.6E-10 61.1 10.5 85 88-180 29-113 (126)
34 PF03079 ARD: ARD/ARD' family; 98.2 1.1E-05 2.3E-10 65.1 9.8 70 107-180 85-154 (157)
35 TIGR02272 gentisate_1_2 gentis 98.2 1E-05 2.2E-10 72.5 9.6 75 94-175 81-155 (335)
36 COG4297 Uncharacterized protei 98.1 1.5E-05 3.1E-10 62.4 6.9 68 103-175 51-119 (163)
37 PRK10296 DNA-binding transcrip 98.0 4E-05 8.7E-10 66.2 10.2 51 104-162 33-83 (278)
38 PF05523 FdtA: WxcM-like, C-te 98.0 2.7E-05 5.9E-10 60.8 8.1 69 101-173 40-109 (131)
39 COG1791 Uncharacterized conser 98.0 5.9E-05 1.3E-09 61.0 9.7 72 109-184 90-161 (181)
40 COG3435 Gentisate 1,2-dioxygen 98.0 1.6E-05 3.4E-10 69.6 6.8 115 53-175 43-166 (351)
41 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2.6E-05 5.5E-10 67.5 7.7 58 104-168 33-90 (287)
42 PRK13501 transcriptional activ 98.0 3.2E-05 6.9E-10 67.3 8.3 55 102-164 26-80 (290)
43 COG3257 GlxB Uncharacterized p 98.0 7.5E-05 1.6E-09 62.7 9.9 75 94-175 61-136 (264)
44 PRK13500 transcriptional activ 98.0 4.7E-05 1E-09 67.3 9.2 55 103-165 57-111 (312)
45 PF06052 3-HAO: 3-hydroxyanthr 97.9 0.00015 3.3E-09 57.5 10.0 77 98-180 37-113 (151)
46 PF14499 DUF4437: Domain of un 97.8 3E-05 6.5E-10 66.8 5.7 73 92-171 34-106 (251)
47 PF05899 Cupin_3: Protein of u 97.8 4.3E-05 9.3E-10 53.8 5.4 60 94-162 7-66 (74)
48 PRK13502 transcriptional activ 97.8 8.1E-05 1.8E-09 64.3 7.9 56 102-165 26-81 (282)
49 PRK13503 transcriptional activ 97.7 8.9E-05 1.9E-09 63.7 6.4 53 103-163 24-76 (278)
50 KOG2107 Uncharacterized conser 97.6 0.00013 2.9E-09 58.6 6.0 57 107-166 86-142 (179)
51 TIGR02272 gentisate_1_2 gentis 97.6 0.00039 8.5E-09 62.4 8.8 87 75-173 232-319 (335)
52 PF06249 EutQ: Ethanolamine ut 97.4 0.0003 6.6E-09 56.3 5.6 68 94-173 77-144 (152)
53 PF05995 CDO_I: Cysteine dioxy 97.2 0.007 1.5E-07 49.5 11.9 85 93-178 74-166 (175)
54 COG4766 EutQ Ethanolamine util 97.2 0.0028 6E-08 50.6 8.5 68 93-172 99-166 (176)
55 COG3435 Gentisate 1,2-dioxygen 97.1 0.0017 3.6E-08 57.2 7.3 70 101-181 268-337 (351)
56 COG3450 Predicted enzyme of th 97.0 0.0028 6.1E-08 48.5 7.1 61 94-163 45-105 (116)
57 COG1898 RfbC dTDP-4-dehydrorha 97.0 0.0057 1.2E-07 50.0 9.2 71 103-173 54-131 (173)
58 TIGR01221 rmlC dTDP-4-dehydror 96.7 0.014 3E-07 47.9 8.9 80 102-181 52-139 (176)
59 PF00908 dTDP_sugar_isom: dTDP 96.7 0.012 2.6E-07 48.2 8.4 81 102-182 51-140 (176)
60 PF13621 Cupin_8: Cupin-like d 96.2 0.025 5.5E-07 47.3 8.0 71 96-167 132-236 (251)
61 PF07385 DUF1498: Protein of u 96.1 0.033 7.1E-07 47.2 8.0 75 99-175 92-187 (225)
62 PF02678 Pirin: Pirin; InterP 95.7 0.043 9.4E-07 41.4 6.5 63 104-172 39-104 (107)
63 KOG3995 3-hydroxyanthranilate 95.7 0.017 3.7E-07 48.5 4.4 57 101-161 40-96 (279)
64 COG3822 ABC-type sugar transpo 95.6 0.066 1.4E-06 44.4 7.6 76 98-175 90-186 (225)
65 PF04209 HgmA: homogentisate 1 95.5 0.095 2.1E-06 48.5 9.3 55 110-173 141-195 (424)
66 COG3806 ChrR Transcriptional a 95.4 0.089 1.9E-06 43.8 7.9 88 72-176 111-198 (216)
67 PF12852 Cupin_6: Cupin 95.3 0.046 1E-06 44.4 5.8 42 116-162 36-77 (186)
68 PRK10572 DNA-binding transcrip 95.3 0.08 1.7E-06 45.8 7.6 49 109-165 44-92 (290)
69 COG1741 Pirin-related protein 95.1 0.09 2E-06 46.1 7.4 69 99-173 49-121 (276)
70 PRK05341 homogentisate 1,2-dio 95.1 0.21 4.6E-06 46.3 10.0 57 109-173 148-204 (438)
71 PF08007 Cupin_4: Cupin superf 95.0 0.25 5.5E-06 44.0 10.3 67 97-164 116-200 (319)
72 PF13759 2OG-FeII_Oxy_5: Putat 94.9 0.067 1.4E-06 39.4 5.2 75 100-174 6-100 (101)
73 PF07847 DUF1637: Protein of u 94.7 0.38 8.3E-06 40.3 9.9 97 74-176 29-143 (200)
74 PLN02658 homogentisate 1,2-dio 94.7 0.3 6.5E-06 45.3 9.9 56 110-173 142-197 (435)
75 PF14499 DUF4437: Domain of un 94.7 0.013 2.8E-07 50.7 1.0 76 94-176 171-246 (251)
76 TIGR02466 conserved hypothetic 94.6 0.18 4E-06 42.2 7.8 77 99-175 101-197 (201)
77 PRK12335 tellurite resistance 94.6 0.18 3.8E-06 44.1 8.0 62 102-164 19-82 (287)
78 COG3257 GlxB Uncharacterized p 94.6 0.16 3.4E-06 43.1 7.2 73 92-172 180-253 (264)
79 TIGR01015 hmgA homogentisate 1 94.5 0.37 7.9E-06 44.7 10.1 56 109-173 142-197 (429)
80 PRK09685 DNA-binding transcrip 94.4 0.34 7.3E-06 42.1 9.3 65 94-165 45-114 (302)
81 COG5553 Predicted metal-depend 94.2 0.35 7.6E-06 39.1 8.2 71 94-168 73-149 (191)
82 PF02373 JmjC: JmjC domain, hy 93.6 0.15 3.3E-06 37.5 4.8 30 138-167 79-108 (114)
83 PF05118 Asp_Arg_Hydrox: Aspar 93.5 0.25 5.4E-06 39.8 6.2 70 96-172 82-156 (163)
84 PRK00924 5-keto-4-deoxyuronate 93.3 0.57 1.2E-05 41.1 8.6 82 93-178 174-261 (276)
85 PRK10579 hypothetical protein; 92.9 2.8 6E-05 30.9 10.4 54 114-174 40-93 (94)
86 PF05726 Pirin_C: Pirin C-term 92.9 0.41 8.8E-06 35.5 6.2 68 97-174 2-69 (104)
87 COG3508 HmgA Homogentisate 1,2 92.6 1.7 3.8E-05 39.4 10.7 58 108-173 139-196 (427)
88 PF06865 DUF1255: Protein of u 92.2 1.2 2.5E-05 32.9 7.7 65 100-174 29-93 (94)
89 PF14525 AraC_binding_2: AraC- 92.2 2.2 4.7E-05 33.1 9.9 66 94-166 34-99 (172)
90 PF09313 DUF1971: Domain of un 92.1 1.7 3.8E-05 31.1 8.4 62 104-165 13-75 (82)
91 PF11142 DUF2917: Protein of u 91.9 0.71 1.5E-05 31.4 5.8 57 99-162 2-58 (63)
92 KOG3706 Uncharacterized conser 91.7 0.13 2.8E-06 48.2 2.7 61 102-163 325-404 (629)
93 PRK15131 mannose-6-phosphate i 91.6 1.2 2.7E-05 40.9 8.9 58 94-161 321-378 (389)
94 TIGR00218 manA mannose-6-phosp 90.3 2.4 5.2E-05 37.4 9.3 59 93-161 234-292 (302)
95 PLN02288 mannose-6-phosphate i 89.9 1.1 2.4E-05 41.3 7.0 58 93-156 333-390 (394)
96 KOG2757 Mannose-6-phosphate is 89.7 1.8 4E-05 39.4 7.9 75 93-175 332-406 (411)
97 PRK09391 fixK transcriptional 88.7 4.6 0.0001 33.8 9.5 78 93-172 35-112 (230)
98 PRK11753 DNA-binding transcrip 88.0 5.4 0.00012 32.4 9.3 54 97-152 21-74 (211)
99 COG2850 Uncharacterized conser 85.4 1.2 2.6E-05 40.6 4.2 62 101-163 126-202 (383)
100 PF07172 GRP: Glycine rich pro 84.7 0.7 1.5E-05 34.1 2.0 12 1-12 1-12 (95)
101 PF04962 KduI: KduI/IolB famil 84.5 15 0.00033 31.9 10.6 98 76-178 135-247 (261)
102 PF00027 cNMP_binding: Cyclic 82.9 3.4 7.4E-05 28.1 5.0 48 100-150 3-51 (91)
103 COG1482 ManA Phosphomannose is 82.2 10 0.00022 34.0 8.7 58 94-161 242-299 (312)
104 PRK03606 ureidoglycolate hydro 81.3 11 0.00024 30.5 8.0 67 107-173 71-140 (162)
105 PRK13918 CRP/FNR family transc 78.9 9.2 0.0002 30.8 6.9 54 98-152 8-62 (202)
106 smart00100 cNMP Cyclic nucleot 77.8 13 0.00028 25.9 6.7 53 98-152 19-71 (120)
107 COG3123 Uncharacterized protei 77.6 8.7 0.00019 27.8 5.5 41 115-160 41-81 (94)
108 cd00038 CAP_ED effector domain 77.2 11 0.00024 26.2 6.3 52 98-151 19-70 (115)
109 KOG2130 Phosphatidylserine-spe 76.8 4.6 0.0001 36.3 4.7 47 137-183 260-306 (407)
110 PRK00924 5-keto-4-deoxyuronate 76.3 23 0.00049 31.2 8.9 53 114-173 72-127 (276)
111 PF04115 Ureidogly_hydro: Urei 76.0 14 0.00029 29.9 7.0 67 108-174 73-144 (165)
112 PF04962 KduI: KduI/IolB famil 75.8 21 0.00046 31.0 8.6 69 94-171 27-103 (261)
113 PHA02984 hypothetical protein; 75.3 19 0.00042 31.5 8.0 55 115-173 91-147 (286)
114 PHA02890 hypothetical protein; 72.2 39 0.00084 29.5 9.1 59 115-179 90-151 (278)
115 PRK10402 DNA-binding transcrip 72.2 14 0.00031 30.6 6.5 52 99-152 34-85 (226)
116 COG1482 ManA Phosphomannose is 71.8 3.5 7.5E-05 36.9 2.8 23 139-161 157-179 (312)
117 PRK15131 mannose-6-phosphate i 71.4 4.3 9.2E-05 37.4 3.4 24 139-162 236-259 (389)
118 TIGR00218 manA mannose-6-phosp 71.1 2.2 4.9E-05 37.6 1.5 21 140-160 151-171 (302)
119 PF06172 Cupin_5: Cupin superf 70.9 49 0.0011 26.0 11.2 84 94-182 41-131 (139)
120 PRK15186 AraC family transcrip 69.8 16 0.00036 32.1 6.6 46 116-167 39-84 (291)
121 PF04622 ERG2_Sigma1R: ERG2 an 69.3 16 0.00035 31.0 6.1 92 106-210 113-206 (216)
122 PLN02868 acyl-CoA thioesterase 69.3 19 0.0004 33.1 7.1 52 98-152 33-84 (413)
123 COG3717 KduI 5-keto 4-deoxyuro 64.4 31 0.00066 29.8 6.8 83 93-179 176-264 (278)
124 PRK13395 ureidoglycolate hydro 62.4 49 0.0011 27.0 7.5 68 108-175 72-143 (171)
125 KOG4281 Uncharacterized conser 61.8 4 8.6E-05 34.6 1.1 41 91-131 72-112 (236)
126 COG3718 IolB Uncharacterized e 59.9 93 0.002 27.0 8.9 71 95-166 30-103 (270)
127 PHA00672 hypothetical protein 59.9 65 0.0014 25.2 7.3 68 92-168 45-112 (152)
128 PRK10202 ebgC cryptic beta-D-g 59.6 86 0.0019 24.7 9.0 54 108-161 58-127 (149)
129 PRK11161 fumarate/nitrate redu 59.0 89 0.0019 25.7 8.9 51 100-152 41-91 (235)
130 COG0664 Crp cAMP-binding prote 57.3 44 0.00095 26.3 6.5 55 98-154 25-79 (214)
131 TIGR00022 uncharacterized prot 57.3 71 0.0015 24.8 7.5 29 103-131 57-85 (142)
132 TIGR03697 NtcA_cyano global ni 57.0 27 0.00058 27.7 5.2 36 115-151 11-46 (193)
133 PF06719 AraC_N: AraC-type tra 56.7 50 0.0011 26.0 6.6 51 116-173 24-77 (155)
134 KOG2131 Uncharacterized conser 54.9 7.1 0.00015 35.7 1.5 62 103-166 207-294 (427)
135 PF04074 DUF386: Domain of unk 52.0 1.1E+02 0.0025 23.9 9.7 68 93-160 45-133 (153)
136 PRK09392 ftrB transcriptional 51.6 69 0.0015 26.4 7.0 51 98-151 32-82 (236)
137 PF13640 2OG-FeII_Oxy_3: 2OG-F 50.9 35 0.00075 24.2 4.5 71 99-169 4-92 (100)
138 COG2731 EbgC Beta-galactosidas 49.9 98 0.0021 24.8 7.2 61 103-163 57-135 (154)
139 PLN02288 mannose-6-phosphate i 49.5 13 0.00029 34.3 2.5 22 141-162 252-273 (394)
140 COG1741 Pirin-related protein 48.7 1.9E+02 0.0041 25.4 11.5 41 86-128 166-206 (276)
141 KOG1417 Homogentisate 1,2-diox 48.2 2.1E+02 0.0045 25.8 9.6 71 107-184 147-219 (446)
142 KOG3416 Predicted nucleic acid 45.4 85 0.0018 24.5 5.9 65 87-162 12-80 (134)
143 PF13994 PgaD: PgaD-like prote 42.4 32 0.00069 26.8 3.3 23 194-216 100-122 (138)
144 PRK14585 pgaD putative PGA bio 42.4 31 0.00066 27.2 3.1 24 193-216 88-111 (137)
145 PRK14584 hmsS hemin storage sy 40.9 35 0.00075 27.4 3.3 24 193-216 97-120 (153)
146 KOG1356 Putative transcription 38.5 11 0.00025 37.8 0.3 57 102-165 763-824 (889)
147 PF13464 DUF4115: Domain of un 37.7 1.3E+02 0.0029 20.5 7.3 48 122-171 5-52 (77)
148 PF13348 Y_phosphatase3C: Tyro 37.7 24 0.00051 23.6 1.7 24 195-218 44-67 (68)
149 PLN03192 Voltage-dependent pot 34.4 90 0.002 31.4 5.9 51 97-150 398-448 (823)
150 PRK05467 Fe(II)-dependent oxyg 34.1 1.2E+02 0.0026 25.8 5.8 25 140-164 141-165 (226)
151 PF13384 HTH_23: Homeodomain-l 33.7 52 0.0011 20.2 2.7 25 194-218 17-41 (50)
152 PF02787 CPSase_L_D3: Carbamoy 33.3 43 0.00093 25.7 2.7 24 194-217 72-95 (123)
153 KOG2132 Uncharacterized conser 32.4 51 0.0011 29.8 3.3 79 84-163 240-349 (355)
154 PF05721 PhyH: Phytanoyl-CoA d 31.2 89 0.0019 24.4 4.4 28 139-166 179-207 (211)
155 PF01238 PMI_typeI: Phosphoman 30.7 42 0.0009 30.6 2.6 22 141-162 251-272 (373)
156 PF14801 GCD14_N: tRNA methylt 29.8 1.2E+02 0.0027 19.9 4.0 30 127-158 11-40 (54)
157 KOG0498 K+-channel ERG and rel 28.6 97 0.0021 31.1 4.8 47 101-150 447-493 (727)
158 PF12071 DUF3551: Protein of u 28.2 77 0.0017 22.6 3.1 14 22-35 20-35 (82)
159 PF15240 Pro-rich: Proline-ric 27.0 46 0.001 27.4 2.0 7 21-27 16-22 (179)
160 TIGR02408 ectoine_ThpD ectoine 26.4 81 0.0018 27.3 3.6 37 141-177 212-250 (277)
161 KOG0501 K+-channel KCNQ [Inorg 24.8 1.1E+02 0.0023 30.3 4.2 50 94-150 569-618 (971)
162 PF01987 AIM24: Mitochondrial 24.5 1.3E+02 0.0029 24.6 4.5 42 118-162 132-173 (215)
163 PRK02290 3-dehydroquinate synt 22.2 2.3E+02 0.005 25.8 5.7 83 73-161 250-335 (344)
164 PF09923 DUF2155: Uncharacteri 22.2 2.8E+02 0.0061 20.1 5.2 59 137-196 11-76 (90)
165 COG3093 VapI Plasmid maintenan 21.6 74 0.0016 23.9 2.0 20 199-218 57-76 (104)
166 COG3128 PiuC Uncharacterized i 20.2 2.2E+02 0.0048 23.9 4.7 34 140-173 144-179 (229)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=2.3e-26 Score=207.50 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=141.1
Q ss_pred cCCCCCCCcccchhcccCCCCCCCCCCCceEEEEeeccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEE
Q 027842 48 CKDPMLVKAEDFYFSGLNREGNTSNPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLE 127 (218)
Q Consensus 48 ck~~~~~~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~ 127 (218)
-+.+..-.++.|.|+....++. ...|++++.++..+||+++ ++++++++++||++.++|||++++|++||++|+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~p~--~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~ 278 (367)
T TIGR03404 203 VTGPAGEVPGPFTYHLSEQKPK--QVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQAR 278 (367)
T ss_pred CcCCCCCCCccEEEEhhhCCce--ecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEE
Confidence 3445555667799998777763 4667889999999999988 48999999999999999999999999999999999
Q ss_pred EEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCCCceeeeccccccCCCCCCHHHHHHHcCCC
Q 027842 128 AGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTVPNTVFGSHPKISTDILAKAFQVD 207 (218)
Q Consensus 128 ~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~i~~~~f~~~p~~p~~vl~~af~~~ 207 (218)
+++.+++ ++.++..+++||+++||+|..|+++|.|+++++++++|++..++.+.++.|+.. +|++||+++|+++
T Consensus 279 ~~v~d~~--g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~~~~~ 352 (367)
T TIGR03404 279 MTVFAAG--GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAHLNLD 352 (367)
T ss_pred EEEEecC--CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHHhCcC
Confidence 9998765 444688999999999999999999999999999999999999999999888743 9999999999999
Q ss_pred HHHHHHHHh
Q 027842 208 QFRIQQIQK 216 (218)
Q Consensus 208 ~~~v~~l~~ 216 (218)
++.+++|++
T Consensus 353 ~~~~~~l~~ 361 (367)
T TIGR03404 353 DEVIDSLKK 361 (367)
T ss_pred HHHHHhccc
Confidence 999999985
No 2
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=1.7e-23 Score=193.74 Aligned_cols=145 Identities=23% Similarity=0.432 Sum_probs=126.2
Q ss_pred CCCCCCCCceEEEEeeccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCC
Q 027842 68 GNTSNPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPG 147 (218)
Q Consensus 68 ~~~~~~~g~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~G 147 (218)
.++.++.+++++.+++.++|+|+++|+++.+++|.||++.+||||++|+|++||++|++.++++++++ ++++..+|++|
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g-~~vf~~~L~~G 400 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG-KTVFNGVLRPG 400 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC-CEEEEEEEcCC
Confidence 45668889999999999999999999999999999999999999999999999999999999998775 78899999999
Q ss_pred cEEEECCCCeEEEEeCCCccEEEEEEecCCCCceeeec--cccccCCCCCCHHHHHHHcCCCHHHHHHHHhc
Q 027842 148 DLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTVP--NTVFGSHPKISTDILAKAFQVDQFRIQQIQKN 217 (218)
Q Consensus 148 Dv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~i~--~~~f~~~p~~p~~vl~~af~~~~~~v~~l~~~ 217 (218)
|+++||+|.+|.... +++...+++.-.+.++-...++ .++|+. +|.+||+++|+++.+++++||..
T Consensus 401 dvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n 468 (493)
T PLN00212 401 QLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNN 468 (493)
T ss_pred CEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999998766 4566777766555444333332 578885 99999999999999999999875
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.90 E-value=6.2e-23 Score=185.19 Aligned_cols=151 Identities=24% Similarity=0.331 Sum_probs=125.7
Q ss_pred CCCcccchhcccCCCCCCCCCCCceEEEEeeccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEe
Q 027842 53 LVKAEDFYFSGLNREGNTSNPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVT 132 (218)
Q Consensus 53 ~~~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~ 132 (218)
.+....|.|+.-.++ ...|++++.++..+||++++ +++.++++.||+..++|||. +.|++||++|++++++++
T Consensus 32 ~~p~~~~~~~~~~~~----~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 32 SVPNLKWSFSDSHNR----LENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVD 104 (367)
T ss_pred ccccceeeeccccCc----cccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEc
Confidence 344445666643333 23578999999999999986 69999999999999999996 689999999999999987
Q ss_pred cCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCC---CceeeeccccccCCCCCCHHHHHHHcCCCHH
Q 027842 133 SNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQN---PGVVTVPNTVFGSHPKISTDILAKAFQVDQF 209 (218)
Q Consensus 133 ~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~---pg~~~i~~~~f~~~p~~p~~vl~~af~~~~~ 209 (218)
++ ++.+.+.|++||+++||+|.+|+++|.+ +.+++++++++.. +..+.++.++ ++ +|.+||+++|++|++
T Consensus 105 ~~--g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~l-~~---~p~~Vla~~f~l~~~ 177 (367)
T TIGR03404 105 EN--GRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDWL-AH---TPKDVLAKNFGVPES 177 (367)
T ss_pred CC--CcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHHH-Hh---CCHHHHHHHhCCCHH
Confidence 65 6767778999999999999999999984 5688888887653 5566777764 65 999999999999999
Q ss_pred HHHHHHhc
Q 027842 210 RIQQIQKN 217 (218)
Q Consensus 210 ~v~~l~~~ 217 (218)
++++|+++
T Consensus 178 ~~~~l~~~ 185 (367)
T TIGR03404 178 AFDNLPLK 185 (367)
T ss_pred HHHhcccc
Confidence 99999864
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.87 E-value=7e-22 Score=156.41 Aligned_cols=127 Identities=30% Similarity=0.513 Sum_probs=106.6
Q ss_pred CCCCCCceEEEEeeccCCCCcccC-eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCC-----eeEEEE
Q 027842 70 TSNPFGSIATRITVTQVPGFNTLG-ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPEN-----RLFTKV 143 (218)
Q Consensus 70 ~~~~~g~~v~~~~~~~~P~l~~~g-~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~-----~~~~~~ 143 (218)
..+..++.++.++..++|.+...+ +.+.+..+.||++..|||| ++.|++||++|+++++++.++ + +....+
T Consensus 9 ~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~--~~~~~~~~~~~~ 85 (144)
T PF00190_consen 9 RVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPG--GPQEEFRDFSQK 85 (144)
T ss_dssp EEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETT--CSSSEEEEEEEE
T ss_pred cccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecC--Cccccceeeece
Confidence 335677899999999999666554 4555667799999999999 899999999999999999875 3 344555
Q ss_pred --eCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCCCceeeeccccccCCCCCCHHHHHHHcCCCHHHH
Q 027842 144 --LRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTVPNTVFGSHPKISTDILAKAFQVDQFRI 211 (218)
Q Consensus 144 --L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~i~~~~f~~~p~~p~~vl~~af~~~~~~v 211 (218)
+++||++++|+|.+||+.|.++++...+.++.+.+|..+ +|+++++++|+++++++
T Consensus 86 v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 86 VRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred eeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 999999999999999999999888888888887777665 79999999999999886
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.85 E-value=7.8e-20 Score=144.99 Aligned_cols=135 Identities=38% Similarity=0.646 Sum_probs=115.0
Q ss_pred CCCCceEEEEeeccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEE
Q 027842 72 NPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFV 151 (218)
Q Consensus 72 ~~~g~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 151 (218)
+..|++++.++...+|.+++.++++.+++++||+..++|+|+++.|++||++|++++.+.+..+ ++...+.+++||+++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~-~~~~~~~l~~GD~~~ 86 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNG-NKVYDARLREGDVFV 86 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC-CeEEEEEecCCCEEE
Confidence 5667789999999999999999999999999999999999987899999999999999875432 344689999999999
Q ss_pred ECCCCeEEEEeCCCccEEEEEEecCCCCceeee---ccccccCCCCCCHHHHHHHcCCCHHHH
Q 027842 152 APKGMIHFQKNIGRGKAVALASLGSQNPGVVTV---PNTVFGSHPKISTDILAKAFQVDQFRI 211 (218)
Q Consensus 152 ~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~i---~~~~f~~~p~~p~~vl~~af~~~~~~v 211 (218)
+|+|..|++.|.+++++++++ +.+++|..... ..++|.. +++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence 999999999999999999985 65666654321 1356664 99999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.80 E-value=4.6e-18 Score=157.75 Aligned_cols=140 Identities=19% Similarity=0.329 Sum_probs=112.5
Q ss_pred CCCCceEEEEeeccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCC----------------
Q 027842 72 NPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNP---------------- 135 (218)
Q Consensus 72 ~~~g~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~---------------- 135 (218)
...|+ ++.....+-+.+...|+++.|.+|.|+++..||+|. +.+++||++|++.++++.++-
T Consensus 59 ~se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~n-a~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~ 136 (493)
T PLN00212 59 RSEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYSN-TPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQ 136 (493)
T ss_pred cccCc-eeeecCCCChhhcccceEEEEEEecCCcccCccccC-CCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccc
Confidence 34455 555555778999999999999999999999999995 899999999999999996310
Q ss_pred -------CCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCCCc--------eeeec---------------
Q 027842 136 -------ENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPG--------VVTVP--------------- 185 (218)
Q Consensus 136 -------~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg--------~~~i~--------------- 185 (218)
|..-..+.+++||++.+|+|++||++|.|+++++++++++..++. .+.++
T Consensus 137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~ 216 (493)
T PLN00212 137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIE 216 (493)
T ss_pred ccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccccc
Confidence 000123699999999999999999999999999988888643322 22222
Q ss_pred ----cccccCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 027842 186 ----NTVFGSHPKISTDILAKAFQVDQFRIQQIQK 216 (218)
Q Consensus 186 ----~~~f~~~p~~p~~vl~~af~~~~~~v~~l~~ 216 (218)
.++|+ +|++++|+.||+++.++++||+.
T Consensus 217 ~~~~~nifs---GF~~e~La~Afnv~~e~~~klq~ 248 (493)
T PLN00212 217 QHSGQNIFS---GFSTELLSEALGINAQVAKRLQS 248 (493)
T ss_pred ccccCchhh---cCCHHHHHHHHCCCHHHHHHHhc
Confidence 23787 49999999999999999999975
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.76 E-value=7.8e-18 Score=139.50 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=126.4
Q ss_pred CcccchhcccCCCCCCCCCCCceEEEEeeccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccE--EEEEEeCEEEEEEEe
Q 027842 55 KAEDFYFSGLNREGNTSNPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATE--ILTVLKGTLEAGFVT 132 (218)
Q Consensus 55 ~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~E--i~yVl~G~~~~~~~~ 132 (218)
..+||+|..+.+.+.. .|+.+.......+|+. .-..+.+.||++...||||+++| +.||++|++.+.+.+
T Consensus 49 ~~~~~~yel~~~~~~~---~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGE---RGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeecccccc---cCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 6788988876665433 2788888888899987 34567899999999999999999 999999999999887
Q ss_pred cCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCCCceeeeccccccCCCCCCHHHHHHHcCCCHHHHH
Q 027842 133 SNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTVPNTVFGSHPKISTDILAKAFQVDQFRIQ 212 (218)
Q Consensus 133 ~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~i~~~~f~~~p~~p~~vl~~af~~~~~~v~ 212 (218)
++ ++..+..+++||++++|++..|+..|+|+++++++.++....+....+..++++ .+..+++..++.+.+.++
T Consensus 121 ~~--G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D 194 (209)
T COG2140 121 PE--GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVD 194 (209)
T ss_pred CC--CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCccccc
Confidence 76 678899999999999999999999999999999999999888888877777766 678888888888877766
Q ss_pred HHHhc
Q 027842 213 QIQKN 217 (218)
Q Consensus 213 ~l~~~ 217 (218)
.++.+
T Consensus 195 ~p~~~ 199 (209)
T COG2140 195 VPRIK 199 (209)
T ss_pred Ccccc
Confidence 66443
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.51 E-value=4.3e-14 Score=97.65 Aligned_cols=70 Identities=33% Similarity=0.486 Sum_probs=63.6
Q ss_pred EEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEe
Q 027842 98 RADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASL 174 (218)
Q Consensus 98 ~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 174 (218)
+++++||+..++|+|+...|++||++|++++.+. ++ ...+++||.+++|++..|.+.|.+++++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~-----~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD-----GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEET-----TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEc-----cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 4789999999999999755999999999999853 44 8999999999999999999999999999999875
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.5e-12 Score=101.21 Aligned_cols=83 Identities=27% Similarity=0.260 Sum_probs=73.7
Q ss_pred cCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEE
Q 027842 92 LGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVAL 171 (218)
Q Consensus 92 ~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 171 (218)
...++.++.+.||+...+|.|.+.+|++||++|++.+.+. ++ ...|++||++++|+|..|+..|.|..++.++
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-----~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~li 106 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-----GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLI 106 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-----CE--EEEecCCCEEEECCCCcEEEEcCCCcceEEE
Confidence 3578999999999999888888889999999999999885 34 8999999999999999999999999999999
Q ss_pred EEecCCCCce
Q 027842 172 ASLGSQNPGV 181 (218)
Q Consensus 172 ~~~~s~~pg~ 181 (218)
.+......+.
T Consensus 107 ei~~p~~~~e 116 (127)
T COG0662 107 EVQSPPYLGE 116 (127)
T ss_pred EEecCCcCCC
Confidence 9976554443
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.45 E-value=1.5e-12 Score=101.07 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=70.3
Q ss_pred cCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEE-EEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEE
Q 027842 92 LGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAG-FVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVA 170 (218)
Q Consensus 92 ~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~-~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~ 170 (218)
.++++.++.++||+..+.|+|.. .|++||++|++++. +.+ ++ ++.|++||+++||++.+|.+.|. +++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~----g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~ 103 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT----GE--VHPIRPGTMYALDKHDRHYLRAG--EDMRL 103 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC----CE--EEEeCCCeEEEECCCCcEEEEcC--CCEEE
Confidence 45788999999999999999975 79999999999998 531 34 89999999999999999999997 89999
Q ss_pred EEEecCCCCce
Q 027842 171 LASLGSQNPGV 181 (218)
Q Consensus 171 l~~~~s~~pg~ 181 (218)
+++++..-+|.
T Consensus 104 l~v~tP~~~~~ 114 (125)
T PRK13290 104 VCVFNPPLTGR 114 (125)
T ss_pred EEEECCCCCCc
Confidence 99988655554
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.43 E-value=2.9e-12 Score=99.53 Aligned_cols=86 Identities=27% Similarity=0.418 Sum_probs=72.9
Q ss_pred ccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeC
Q 027842 84 TQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNI 163 (218)
Q Consensus 84 ~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~ 163 (218)
..++...+..+.+.++.++||+..++|+||...+.+||++|++++++. ++ .+.+++||++++|+|..|+..|.
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-----g~--~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-----GE--KKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec-----CC--ceEecCCCEEEECCCCeeeeccC
Confidence 344444455678899999999999999999558999999999999985 23 88999999999999999999999
Q ss_pred CCccEEEEEEecC
Q 027842 164 GRGKAVALASLGS 176 (218)
Q Consensus 164 g~~~a~~l~~~~s 176 (218)
+++....++++..
T Consensus 106 ~~~~~~~l~v~~~ 118 (131)
T COG1917 106 EDEPMVLLLVFPL 118 (131)
T ss_pred CCCceeEEEEeee
Confidence 9888677777654
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.34 E-value=4.3e-11 Score=99.16 Aligned_cols=97 Identities=23% Similarity=0.244 Sum_probs=78.6
Q ss_pred EEEEeeccCCCCcccCeEEEEEEEcCCCc------CCCcCCCCc--cEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcE
Q 027842 78 ATRITVTQVPGFNTLGISIARADFAPGGV------NPPHFHPRA--TEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDL 149 (218)
Q Consensus 78 v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~------~ppH~H~~a--~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv 149 (218)
+..+.. ..|.....++.+....++||.. .+.|+|+.. .|+.||++|++.+.+.+.+ +......+++||+
T Consensus 53 ~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~--G~~~~~~v~pGd~ 129 (191)
T PRK04190 53 VYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE--GEARWIEMEPGTV 129 (191)
T ss_pred EEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC--CcEEEEEECCCCE
Confidence 444443 3334555678999999999996 567999754 5999999999999887554 3445789999999
Q ss_pred EEECCCCeEEEEeCCCccEEEEEEecCC
Q 027842 150 FVAPKGMIHFQKNIGRGKAVALASLGSQ 177 (218)
Q Consensus 150 ~~~P~g~~H~~~N~g~~~a~~l~~~~s~ 177 (218)
+++|+|..|...|.|++++++++++...
T Consensus 130 v~IPpg~~H~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 130 VYVPPYWAHRSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EEECCCCcEEeEECCCCCEEEEEEEcCC
Confidence 9999999999999999999999988643
No 13
>PRK11171 hypothetical protein; Provisional
Probab=99.27 E-value=1.3e-10 Score=100.92 Aligned_cols=78 Identities=21% Similarity=0.168 Sum_probs=68.6
Q ss_pred ccCeEEEEEEEcCCCcCCCcCCC-CccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEE
Q 027842 91 TLGISIARADFAPGGVNPPHFHP-RATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAV 169 (218)
Q Consensus 91 ~~g~s~~~~~l~Pgg~~ppH~H~-~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~ 169 (218)
+.++.+.+++++||+....|.|+ +..|++||++|++++.+. ++ ++.|++||.++||++..|.+.|.++++++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~-----g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~ 130 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLE-----GK--THALSEGGYAYLPPGSDWTLRNAGAEDAR 130 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEEC-----CE--EEEECCCCEEEECCCCCEEEEECCCCCEE
Confidence 44688999999999987777765 568999999999999874 44 89999999999999999999999999999
Q ss_pred EEEEec
Q 027842 170 ALASLG 175 (218)
Q Consensus 170 ~l~~~~ 175 (218)
++++..
T Consensus 131 ~l~v~~ 136 (266)
T PRK11171 131 FHWIRK 136 (266)
T ss_pred EEEEEc
Confidence 998864
No 14
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.26 E-value=7.3e-11 Score=96.98 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=64.8
Q ss_pred CeEEEEEEEcCCCcCC-CcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEE
Q 027842 93 GISIARADFAPGGVNP-PHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVAL 171 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~p-pH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 171 (218)
.+.+....++||+... .|+|+ +.|++||++|++++.+. ++ .+.|++||+++||++.+|.+.|.++++++++
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~-----~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l 177 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTIN-----GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRII 177 (185)
T ss_pred eeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEEC-----CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEE
Confidence 4567777899998754 66677 59999999999999884 44 8999999999999999999999999999999
Q ss_pred EEec
Q 027842 172 ASLG 175 (218)
Q Consensus 172 ~~~~ 175 (218)
++..
T Consensus 178 ~~~~ 181 (185)
T PRK09943 178 SAHT 181 (185)
T ss_pred EEeC
Confidence 9864
No 15
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.23 E-value=1e-10 Score=109.13 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=70.6
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
++.+.+++++||+..+.|+|+...|.+||++|++++.+. ++ ++.|++||+++||+|.+|.+.|.|++++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d-----g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~ 447 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG-----DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIE 447 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC-----CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 578889999999998989988789999999999999874 44 88999999999999999999999999999999
Q ss_pred EecCC
Q 027842 173 SLGSQ 177 (218)
Q Consensus 173 ~~~s~ 177 (218)
+....
T Consensus 448 v~~~~ 452 (468)
T TIGR01479 448 VQSGS 452 (468)
T ss_pred EEcCC
Confidence 97643
No 16
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.22 E-value=1e-10 Score=109.18 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=69.8
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
++.+.+++++||+..+.|+|...+|.+||++|++++.+. ++ ++.|++||+++||+|.+|++.|.|++++++++
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id-----g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~ 456 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID-----GD--IKLLGENESIYIPLGATHCLENPGKIPLDLIE 456 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC-----CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 578899999999988788887778999999999999885 44 89999999999999999999999999999999
Q ss_pred EecC
Q 027842 173 SLGS 176 (218)
Q Consensus 173 ~~~s 176 (218)
+...
T Consensus 457 V~~g 460 (478)
T PRK15460 457 VRSG 460 (478)
T ss_pred EEcC
Confidence 8754
No 17
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.21 E-value=1.2e-10 Score=92.42 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=70.6
Q ss_pred ccCCCCcccCeEEEEEEEcCCCcC-CCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCC--CeEEE
Q 027842 84 TQVPGFNTLGISIARADFAPGGVN-PPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKG--MIHFQ 160 (218)
Q Consensus 84 ~~~P~l~~~g~s~~~~~l~Pgg~~-ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g--~~H~~ 160 (218)
..+-||...|+ ....++||+.. ..|||...+|++|||+|++++.+. +. ++.|++||++-||+| ..|.+
T Consensus 34 G~~~Gl~~fGv--n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d-----~~--e~~lrpGD~~gFpAG~~~aHhl 104 (161)
T COG3837 34 GDALGLKRFGV--NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED-----GG--ETRLRPGDSAGFPAGVGNAHHL 104 (161)
T ss_pred hhhcChhhccc--ceEEeCCCCccccccccccCceEEEEEcCceEEEEC-----Ce--eEEecCCceeeccCCCcceeEE
Confidence 45556665454 44568999974 589999999999999999999874 33 889999999999999 89999
Q ss_pred EeCCCccEEEEEEecCC
Q 027842 161 KNIGRGKAVALASLGSQ 177 (218)
Q Consensus 161 ~N~g~~~a~~l~~~~s~ 177 (218)
.|.++..++++++-+-.
T Consensus 105 iN~s~~~~~yL~vG~r~ 121 (161)
T COG3837 105 INRSDVILRYLEVGTRE 121 (161)
T ss_pred eecCCceEEEEEecccc
Confidence 99999999999986543
No 18
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.19 E-value=4.3e-10 Score=90.00 Aligned_cols=127 Identities=23% Similarity=0.360 Sum_probs=91.4
Q ss_pred CcceEeecCCCCccccCcccCCCCCCCcccchhcccCCCCC--------CCCCCCceEEEEeeccCCCCcccCeEEEEEE
Q 027842 29 LQDFCVADLQKPVLVNGYACKDPMLVKAEDFYFSGLNREGN--------TSNPFGSIATRITVTQVPGFNTLGISIARAD 100 (218)
Q Consensus 29 ~~d~cv~~~~~~~~~~g~~ck~~~~~~~~df~~~~~~~~~~--------~~~~~g~~v~~~~~~~~P~l~~~g~s~~~~~ 100 (218)
|.|..|.+....+.+ |+....-...+.+-. +...+. ...++|..-+ +. .+.+..+-++.
T Consensus 3 ~~d~ivv~t~DaiLV----~~k~~~q~vK~~v~~-lk~~~~~E~~~~~~~~rpWG~~~~-l~-------~~~~~~vkri~ 69 (151)
T PF01050_consen 3 VEDLIVVDTPDAILV----ADKDRSQDVKEVVEQ-LKQKGRYEAKEHRRVYRPWGSYEV-LD-------EGEGYKVKRIT 69 (151)
T ss_pred ccCEEEEECCCEEEE----ECcHHhhhhHHHHHh-hhcccccccccceeEecCCcEEEE-EE-------ccCCEEEEEEE
Confidence 567777766655554 433333333344322 222221 1246775333 32 12357789999
Q ss_pred EcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEec
Q 027842 101 FAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLG 175 (218)
Q Consensus 101 l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 175 (218)
+.||...++|.|....|.++|++|++.+.+. ++ .+.+++||++++|+|..|++.|.|+.+++++-+-.
T Consensus 70 V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~-----~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~ 137 (151)
T PF01050_consen 70 VNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD-----DE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQT 137 (151)
T ss_pred EcCCCccceeeecccccEEEEEeCeEEEEEC-----CE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEec
Confidence 9999999999998889999999999999874 44 88999999999999999999999999999998743
No 19
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=2.2e-10 Score=87.00 Aligned_cols=83 Identities=28% Similarity=0.456 Sum_probs=73.2
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCee-EEEEeCCCcEEEECCCCeEEEEeCCCccEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRL-FTKVLRPGDLFVAPKGMIHFQKNIGRGKAVAL 171 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~-~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 171 (218)
|+.+-.++++||+....|.|.+-+-.+||++|+...+++ +++ +..+..+||.+++|+|++|.-.|.+++++..+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G-----~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v 119 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG-----NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV 119 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec-----cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence 677888999999999999999878899999999999987 343 56789999999999999999999999999999
Q ss_pred EEecCCCCc
Q 027842 172 ASLGSQNPG 180 (218)
Q Consensus 172 ~~~~s~~pg 180 (218)
.+.+..+|.
T Consensus 120 IaRsDp~~~ 128 (142)
T COG4101 120 IARSDPNPQ 128 (142)
T ss_pred EEccCCCCC
Confidence 888765553
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.06 E-value=3.7e-09 Score=91.67 Aligned_cols=76 Identities=20% Similarity=0.136 Sum_probs=66.1
Q ss_pred CeEEEEEEEcCCCcCC-CcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEE
Q 027842 93 GISIARADFAPGGVNP-PHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVAL 171 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~p-pH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 171 (218)
.+++..++++||+..+ +|.|++.+|++||++|++++.+. ++ ++.|++||.+++|++..|.+.|.++++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~-----g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l 129 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE-----GE--THELREGGYAYLPPGSKWTLANAQAEDARFF 129 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC-----CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 5788899999987654 56677668999999999999874 44 7899999999999999999999999999999
Q ss_pred EEec
Q 027842 172 ASLG 175 (218)
Q Consensus 172 ~~~~ 175 (218)
++..
T Consensus 130 ~v~k 133 (260)
T TIGR03214 130 LYKK 133 (260)
T ss_pred EEEe
Confidence 8764
No 21
>PRK11171 hypothetical protein; Provisional
Probab=99.03 E-value=4.4e-09 Score=91.46 Aligned_cols=76 Identities=18% Similarity=0.059 Sum_probs=65.9
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
.+.+.+++++||+..+.|-|...+|.+||++|++++.+. ++ .+.|++||++.|+++.+|++.|.|+++++++.
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~-----~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~ 255 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLN-----ND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLL 255 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEEC-----CE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEE
Confidence 367889999999999985344479999999999999874 44 89999999999999999999999999999987
Q ss_pred Eec
Q 027842 173 SLG 175 (218)
Q Consensus 173 ~~~ 175 (218)
.-+
T Consensus 256 ~k~ 258 (266)
T PRK11171 256 YKD 258 (266)
T ss_pred Ecc
Confidence 543
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.02 E-value=2.7e-09 Score=92.55 Aligned_cols=74 Identities=20% Similarity=0.116 Sum_probs=63.7
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
++.+.+++++||+..+.|.|..-+|.+||++|++.+.+. ++ .+.+++||++++|++.+|+++|.|+++.+++.
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~-----g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ 250 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLD-----NN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLL 250 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEEC-----CE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEE
Confidence 567788999999999964444468899999999988763 44 89999999999999999999999999999885
Q ss_pred E
Q 027842 173 S 173 (218)
Q Consensus 173 ~ 173 (218)
-
T Consensus 251 y 251 (260)
T TIGR03214 251 Y 251 (260)
T ss_pred E
Confidence 3
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.96 E-value=9.8e-09 Score=80.96 Aligned_cols=99 Identities=21% Similarity=0.260 Sum_probs=59.5
Q ss_pred CCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCC--CCeeEEEEeCCCcEEEECCCCeEEEEeCC
Q 027842 87 PGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNP--ENRLFTKVLRPGDLFVAPKGMIHFQKNIG 164 (218)
Q Consensus 87 P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~--~~~~~~~~L~~GDv~~~P~g~~H~~~N~g 164 (218)
-|+. .+.+..-+++||...|.|.|. .+|+++|++|++++.+..... .|+..+..+.+++.+.||.+..|..+|++
T Consensus 39 hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 39 HGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp H--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred cCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 4554 357777889999999999999 699999999999998875531 15667899999999999999999999999
Q ss_pred -CccEEEEEEecCCCCceeeecccc
Q 027842 165 -RGKAVALASLGSQNPGVVTVPNTV 188 (218)
Q Consensus 165 -~~~a~~l~~~~s~~pg~~~i~~~~ 188 (218)
.+++.++++.+..--..+...+|.
T Consensus 116 e~eDlqvlViiSrpPvkvf~y~dw~ 140 (167)
T PF02041_consen 116 EHEDLQVLVIISRPPVKVFIYDDWS 140 (167)
T ss_dssp SSS-EEEEEEEESSS--EEEESSTT
T ss_pred CCcceEEEEEecCCCeEEEEecccc
Confidence 589999988754332344444543
No 24
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.72 E-value=8.4e-08 Score=78.23 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=55.5
Q ss_pred EcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 101 FAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 101 l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
=.||.....|+|+ +.|++|+++|++++.+.+. ++.....|++||++++|+|++|..+.. +..+.+.+
T Consensus 41 gGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 41 GGPNARTDFHYDP-GEEFFYQLEGDMYLKVQED---GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred ccCCcccccccCC-CceEEEEECCeEEEEEEcC---CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 3688888999999 6999999999999999763 554589999999999999999998763 44555544
No 25
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.72 E-value=1e-07 Score=76.64 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=53.6
Q ss_pred cCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 102 APGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 102 ~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
.||....+|.|+ +.|++|+++|++.+.+.+. ++.....|++||++++|+|++|..... +.++.+.+
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~flvP~gvpHsP~r~--~~t~~LvI 101 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE---GKREDVPIREGDIFLLPPHVPHSPQRP--AGSIGLVI 101 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC---CcEEEEEECCCCEEEeCCCCCcccccC--CCcEEEEE
Confidence 677777789988 7999999999999988754 445689999999999999999998764 33444444
No 26
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.69 E-value=2.9e-07 Score=75.75 Aligned_cols=84 Identities=24% Similarity=0.326 Sum_probs=56.7
Q ss_pred ccCeEEEEEEEcCCCc------CCCcCCCC------ccEEEEEEeCEEEEEEEecCCCC----eeEEEEeCCCcEEEECC
Q 027842 91 TLGISIARADFAPGGV------NPPHFHPR------ATEILTVLKGTLEAGFVTSNPEN----RLFTKVLRPGDLFVAPK 154 (218)
Q Consensus 91 ~~g~s~~~~~l~Pgg~------~ppH~H~~------a~Ei~yVl~G~~~~~~~~~~~~~----~~~~~~L~~GDv~~~P~ 154 (218)
..++......+.||.+ ..-|+|+. ..|+.+|++|++.+.+.+.+ + +.....+++||+++||+
T Consensus 47 ~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~--~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 47 KRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE--GDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp ---EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT--S-----EEEEEE-TTEEEEE-T
T ss_pred eeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC--CCcceeEEEEEeCCCCEEEECC
Confidence 3356777777888864 34699987 79999999999999888765 4 66788999999999999
Q ss_pred CCeEEEEeCCCccEEEEEEecC
Q 027842 155 GMIHFQKNIGRGKAVALASLGS 176 (218)
Q Consensus 155 g~~H~~~N~g~~~a~~l~~~~s 176 (218)
+..|...|+|++++++...+.+
T Consensus 125 ~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 125 GYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp T-EEEEEE-SSS-EEEEEEEET
T ss_pred CceEEEEECCCCcEEEEEEEec
Confidence 9999999999999999888764
No 27
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.50 E-value=1.7e-06 Score=62.80 Aligned_cols=73 Identities=27% Similarity=0.407 Sum_probs=55.0
Q ss_pred CeEEEEEEEcCCCcCCC-cCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEE
Q 027842 93 GISIARADFAPGGVNPP-HFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVAL 171 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~pp-H~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 171 (218)
.++...++|+||+.-++ +.+. ..-++||++|.+++.+. + .+..+.+|+++++|+|-.-.++|.++++|+++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~-----~--~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIH-----E--TSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEET-----T--EEEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEc-----C--cEEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 35778899999998765 5555 68899999999999984 3 38899999999999999999999999999987
Q ss_pred EE
Q 027842 172 AS 173 (218)
Q Consensus 172 ~~ 173 (218)
-+
T Consensus 83 F~ 84 (85)
T PF11699_consen 83 FV 84 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 28
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.47 E-value=6.4e-07 Score=67.66 Aligned_cols=64 Identities=30% Similarity=0.333 Sum_probs=46.9
Q ss_pred CCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEe
Q 027842 103 PGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASL 174 (218)
Q Consensus 103 Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 174 (218)
++...++|+|+ .-|++||++|++++.+. ++ .+.+++||++++|+|.+|.....++++...+.+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~-----~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHID-----GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEET-----TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEEC-----CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 45556789999 59999999999999773 44 8999999999999999999988877677766664
No 29
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.40 E-value=4.5e-06 Score=70.69 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=51.9
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
.|+...+.+.- ...+||.+-.|+.||++|++++.+. ++ ++.+++||++++|+|..|.+...+ .++++.
T Consensus 156 ~m~aGf~~~~~---~sf~wtl~~dEi~YVLEGe~~l~Id-----G~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly 223 (233)
T PRK15457 156 SMAAGFMQWEN---AFFPWTLNYDEIDMVLEGELHVRHE-----GE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY 223 (233)
T ss_pred ceeeEEEEEec---CccceeccceEEEEEEEeEEEEEEC-----CE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence 34555555553 3345666679999999999999884 44 899999999999999996665543 666665
Q ss_pred Ee
Q 027842 173 SL 174 (218)
Q Consensus 173 ~~ 174 (218)
+.
T Consensus 224 V~ 225 (233)
T PRK15457 224 VA 225 (233)
T ss_pred EE
Confidence 54
No 30
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.40 E-value=4.8e-07 Score=66.03 Aligned_cols=66 Identities=27% Similarity=0.456 Sum_probs=51.5
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
|..+..++++||+..|.|.|+ +.|.+|||+|++.. . + ..+.+||.++.|+|..|.... ++.+.++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~---~----~~~~~G~~~~~p~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----G---D----GRYGAGDWLRLPPGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----T---T----CEEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----C---C----ccCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence 567788899999999999999 58888999999753 2 2 256999999999999999984 56677765
No 31
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.36 E-value=1.6e-06 Score=73.17 Aligned_cols=72 Identities=25% Similarity=0.344 Sum_probs=61.7
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
..+..+.++||+..|.|.|. +.|+.+|++|++. +. ...+.+||.+..|.|..|...+.++++++.+++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de-------~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE-------TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC-------CCccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence 35677889999999999997 6999999999953 22 347899999999999999999998899999998
Q ss_pred ecCC
Q 027842 174 LGSQ 177 (218)
Q Consensus 174 ~~s~ 177 (218)
.+..
T Consensus 195 ~dap 198 (215)
T TIGR02451 195 LDAP 198 (215)
T ss_pred ecCC
Confidence 7653
No 32
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.34 E-value=2.3e-06 Score=75.47 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=49.9
Q ss_pred EEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCC
Q 027842 99 ADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGR 165 (218)
Q Consensus 99 ~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 165 (218)
..-+|..+.++|||.+ -|+.|+++|++.+.+. |+ ...+++||.+++++|.+|.....++
T Consensus 31 ~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i~-----g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 31 EFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLIN-----NE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EeeCCCCCCCCCcccc-EEEEEecCCcEEEEEC-----CE--EEEEcCCcEEEEecCCcccccccCC
Confidence 4466778889999995 9999999999988764 45 8899999999999999998765444
No 33
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.25 E-value=1.7e-05 Score=61.15 Aligned_cols=85 Identities=14% Similarity=0.248 Sum_probs=72.7
Q ss_pred CCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCcc
Q 027842 88 GFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGK 167 (218)
Q Consensus 88 ~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 167 (218)
.-.+.|+|+-...+.+|.....|+-. --|.+||++|++++...+. |+ .+.++||.+....+...|..+... +
T Consensus 29 ~~DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~---G~--~~~i~pGt~YaLd~hD~H~lra~~--d 100 (126)
T PF06339_consen 29 KDDGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT---GE--VHPIKPGTMYALDKHDRHYLRAKT--D 100 (126)
T ss_pred ccCCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC---Cc--EEEcCCCeEEecCCCccEEEEecC--C
Confidence 34567999999999999999999865 3899999999999987654 55 899999999999999999998744 9
Q ss_pred EEEEEEecCCCCc
Q 027842 168 AVALASLGSQNPG 180 (218)
Q Consensus 168 a~~l~~~~s~~pg 180 (218)
++++|+|+..--|
T Consensus 101 m~~vCVFnPpltG 113 (126)
T PF06339_consen 101 MRLVCVFNPPLTG 113 (126)
T ss_pred EEEEEEcCCCCcC
Confidence 9999999975544
No 34
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.24 E-value=1.1e-05 Score=65.08 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=50.2
Q ss_pred CCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCCCc
Q 027842 107 NPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPG 180 (218)
Q Consensus 107 ~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg 180 (218)
...|.|.+ .|+-|+++|++.+.+-..+ ++.....+++||.+++|+|+.|++.-..+....++=.|. ..||
T Consensus 85 ~~EH~H~d-eEvR~i~~G~g~Fdvr~~~--~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~-~~~g 154 (157)
T PF03079_consen 85 FEEHTHED-EEVRYIVDGSGYFDVRDGD--DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK-DEPG 154 (157)
T ss_dssp CS-EEESS--EEEEEEECEEEEEEE-TT--CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES-SCGG
T ss_pred heeEecCh-heEEEEeCcEEEEEEEcCC--CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec-CCCC
Confidence 45899995 9999999999999998654 565668999999999999999999765555566665554 3444
No 35
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.18 E-value=1e-05 Score=72.48 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=62.8
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
+....-.+.||...++|.|. +.-+.+|++|+.....++ ++ ...+++||+++.|.+..|...|.|++++..+..
T Consensus 81 l~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~----g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 81 LYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVD----GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred HHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEEC----CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence 34455568999999999999 689999999998655553 44 899999999999999999999999999777655
Q ss_pred ec
Q 027842 174 LG 175 (218)
Q Consensus 174 ~~ 175 (218)
.+
T Consensus 154 lD 155 (335)
T TIGR02272 154 LD 155 (335)
T ss_pred CC
Confidence 43
No 36
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.06 E-value=1.5e-05 Score=62.37 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=55.4
Q ss_pred CCCcCC-CcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEec
Q 027842 103 PGGVNP-PHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLG 175 (218)
Q Consensus 103 Pgg~~p-pH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 175 (218)
.|++.+ -|+|.++.|++.|++|+..+.++..+ |. +..+.+||++++|+|+-|.- +....+..++.++.
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~--G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaYp 119 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGAD--GQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAYP 119 (163)
T ss_pred cccccccccccCCcceEEEEecceeEEEecCCC--Cc--eeeecCCCEEEEecCccccc-ccCCCCeEEEcccC
Confidence 345544 58999999999999999999998775 55 88999999999999999975 44556677776664
No 37
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.04 E-value=4e-05 Score=66.18 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=43.7
Q ss_pred CCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEe
Q 027842 104 GGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 104 gg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 162 (218)
+...++|||. ..|++||++|++++.+. ++ .+.+++||++++|+|..|....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~-----~~--~~~l~~g~l~~i~p~~~H~~~~ 83 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEIN-----GK--RVLLERGDFVFIPLGSHHQSFY 83 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEEC-----CE--EEEECCCcEEEeCCCCccceee
Confidence 3456899998 59999999999998874 44 8899999999999999997644
No 38
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.03 E-value=2.7e-05 Score=60.81 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=43.0
Q ss_pred EcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCc-EEEECCCCeEEEEeCCCccEEEEEE
Q 027842 101 FAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGD-LFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 101 l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GD-v~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
.++|....+|+|....|+++|++|++++.+.+.. ...+..|...+ .+.+|+|..|.+.|.+++ +++++.
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~---~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~ 109 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR---EEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVL 109 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS----EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEE
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCC---CcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEE
Confidence 4455558899999999999999999999886543 33677787775 899999999999998777 666654
No 39
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.01 E-value=5.9e-05 Score=60.99 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=58.8
Q ss_pred CcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCCCceeee
Q 027842 109 PHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVTV 184 (218)
Q Consensus 109 pH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~i 184 (218)
-|.|. ..|+.|++.|++.+.+...+ ++.+.....+||.+.+|+|+-||+--..+-..+.+=.|. ..||.+-+
T Consensus 90 EH~H~-d~EvRy~vaG~GiF~v~~~d--~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa~ 161 (181)
T COG1791 90 EHLHT-DDEVRYFVAGEGIFDVHSPD--GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVAI 161 (181)
T ss_pred HhccC-CceEEEEEecceEEEEECCC--CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCceee
Confidence 69998 59999999999999998765 788999999999999999999999765555566655554 56676643
No 40
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.00 E-value=1.6e-05 Score=69.64 Aligned_cols=115 Identities=20% Similarity=0.278 Sum_probs=85.4
Q ss_pred CCCcccchhcccC----CCCCCCCCCCceEEEEeeccCCCCcccC-e----EEEEEEEcCCCcCCCcCCCCccEEEEEEe
Q 027842 53 LVKAEDFYFSGLN----REGNTSNPFGSIATRITVTQVPGFNTLG-I----SIARADFAPGGVNPPHFHPRATEILTVLK 123 (218)
Q Consensus 53 ~~~~~df~~~~~~----~~~~~~~~~g~~v~~~~~~~~P~l~~~g-~----s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~ 123 (218)
...+.-+.|.-+. ..+......+ .++++-..+-|+|++.. + ....--|.||-..|.|.|. .+-+-+|+|
T Consensus 43 ~~vp~lW~~~~ir~ll~~sgeli~~~~-a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvve 120 (351)
T COG3435 43 DCVPALWKYEEIRPLLLRSGELISARE-AVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVE 120 (351)
T ss_pred ccccccccHHHHHHHHHHhhhccCccc-ceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEe
Confidence 3344445555422 2333322333 46677778889988774 1 1222347899999999998 589999999
Q ss_pred CEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEec
Q 027842 124 GTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLG 175 (218)
Q Consensus 124 G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 175 (218)
|+.-+..++ |+ ...+++||.++-|++..|..-|.|.+|++.+-.+.
T Consensus 121 G~Ga~T~Vd----Ge--r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 121 GKGAYTVVD----GE--RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred ccceeEeec----Cc--eeeccCCCEEEccCceeccCCCCCCCceEEEcccc
Confidence 999888885 43 78999999999999999999999999999997664
No 41
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.97 E-value=2.6e-05 Score=67.49 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=47.6
Q ss_pred CCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccE
Q 027842 104 GGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKA 168 (218)
Q Consensus 104 gg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a 168 (218)
+...++|||.+.-|++|+++|++++.+. ++ .+.+++||++++|+|..|.+...++...
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~-----~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~ 90 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLD-----EH--EYSEYAPCFFLTPPSVPHGFVTDLDADG 90 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEEC-----CE--EEEecCCeEEEeCCCCccccccCCCcce
Confidence 4567899998558999999999988764 44 8899999999999999999876544433
No 42
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.97 E-value=3.2e-05 Score=67.34 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=46.3
Q ss_pred cCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCC
Q 027842 102 APGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIG 164 (218)
Q Consensus 102 ~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g 164 (218)
.+....++|||+ -.|++||++|++++.+. ++ .+.+++||++++|+|.+|.+...+
T Consensus 26 ~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~-----~~--~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 26 YPQETFVEHTHQ-FCEIVIVWRGNGLHVLN-----DH--PYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCCCCCcccccc-ceeEEEEecCceEEEEC-----Ce--eeeecCCeEEEEcCCCcccccccC
Confidence 344456799998 59999999999998874 44 899999999999999999987543
No 43
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.97 E-value=7.5e-05 Score=62.73 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=64.2
Q ss_pred eEEEEEEEcCCC-cCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 94 ISIARADFAPGG-VNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 94 ~s~~~~~l~Pgg-~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
++-..+++.|+| ...+-.-++++-++||++|++++.+. |+ ++.|++|+..++|+|..|..+|...+++++.+
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~-----G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw 133 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE-----GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHW 133 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc-----Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEEE
Confidence 344567888877 55677778888899999999999885 55 89999999999999999999999999999998
Q ss_pred Eec
Q 027842 173 SLG 175 (218)
Q Consensus 173 ~~~ 175 (218)
+-.
T Consensus 134 ~rk 136 (264)
T COG3257 134 IRK 136 (264)
T ss_pred Eee
Confidence 765
No 44
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.95 E-value=4.7e-05 Score=67.30 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=46.4
Q ss_pred CCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCC
Q 027842 103 PGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGR 165 (218)
Q Consensus 103 Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 165 (218)
|....++|||+ ..|++||++|++.+.+. ++ .+.+++||++++++|.+|.+....+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~-----~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLN-----DR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEEC-----CE--EEeecCCeEEEECCCCeecccccCC
Confidence 33456899998 69999999999998774 44 8999999999999999999876443
No 45
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.89 E-value=0.00015 Score=57.52 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=49.8
Q ss_pred EEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCC
Q 027842 98 RADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQ 177 (218)
Q Consensus 98 ~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~ 177 (218)
.+.=.|+...-.|.-+ +.|++|.++|...+.+.+. |+.....+++||++..|++++|.-+-.. +.+-+++-...
T Consensus 37 mvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~---g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R 110 (151)
T PF06052_consen 37 MVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED---GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKR 110 (151)
T ss_dssp EEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET---TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE--
T ss_pred EEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC---CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEecc
Confidence 3445777788889888 6999999999999999875 6778999999999999999999887653 44445444333
Q ss_pred CCc
Q 027842 178 NPG 180 (218)
Q Consensus 178 ~pg 180 (218)
.++
T Consensus 111 ~~~ 113 (151)
T PF06052_consen 111 PEG 113 (151)
T ss_dssp -TT
T ss_pred CCC
Confidence 333
No 46
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.84 E-value=3e-05 Score=66.84 Aligned_cols=73 Identities=29% Similarity=0.398 Sum_probs=47.1
Q ss_pred cCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEE
Q 027842 92 LGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVAL 171 (218)
Q Consensus 92 ~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 171 (218)
.|.+..++.+++|-..|||+|. +++-+|||+|.+..+ + .+....-|.+|..+..|+|..|.....+.+.+.++
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T----EE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C----CcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 3678899999999999999999 799999999987652 1 33345679999999999999999877666656555
No 47
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.83 E-value=4.3e-05 Score=53.80 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=43.2
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEe
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 162 (218)
++....+-.||.. +.++. ..|++|||+|++++... + +. ++.+++||++++|+|..-.+.-
T Consensus 7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~~--~--G~--~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITDE--D--GE--TVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEET--T--TE--EEEEETTEEEEE-TTEEEEEEE
T ss_pred EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEEC--C--CC--EEEEcCCcEEEECCCCEEEEEE
Confidence 4455566777653 23333 49999999999988753 2 54 8999999999999998766643
No 48
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.80 E-value=8.1e-05 Score=64.33 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=46.7
Q ss_pred cCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCC
Q 027842 102 APGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGR 165 (218)
Q Consensus 102 ~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 165 (218)
.|....++|||. .-|++||.+|++++.+. ++ .+.+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~-----~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLN-----ER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEEC-----CE--EEeecCCcEEEECCCCcccccccCC
Confidence 444457899998 69999999999998773 44 8999999999999999998865443
No 49
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.69 E-value=8.9e-05 Score=63.73 Aligned_cols=53 Identities=25% Similarity=0.274 Sum_probs=45.5
Q ss_pred CCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeC
Q 027842 103 PGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNI 163 (218)
Q Consensus 103 Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~ 163 (218)
+....++|||. .-|++||++|++++.+. ++ .+.+++||++++|++..|.+...
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~-----~~--~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFN-----GQ--PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEec-----CC--cccccCCcEEEECCCccchhhhc
Confidence 44567899998 59999999999998875 34 78999999999999999987664
No 50
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.63 E-value=0.00013 Score=58.61 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=48.7
Q ss_pred CCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCc
Q 027842 107 NPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRG 166 (218)
Q Consensus 107 ~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~ 166 (218)
...|.|.+ +|+-||++|++.+-+-+.+ ++....-+++||.+++|+|+-|++.-..+.
T Consensus 86 fEEhlh~d-eeiR~il~GtgYfDVrd~d--d~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 86 FEEHLHED-EEIRYILEGTGYFDVRDKD--DQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHhcCch-hheEEEeecceEEeeccCC--CCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 35899996 9999999999999887765 677888999999999999999998654443
No 51
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.57 E-value=0.00039 Score=62.43 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=62.8
Q ss_pred CceEEEEeeccCCC-CcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEEC
Q 027842 75 GSIATRITVTQVPG-FNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAP 153 (218)
Q Consensus 75 g~~v~~~~~~~~P~-l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 153 (218)
|-.+.-+|...-+. ..+++..+ ..++||....+|.|. .+.+++|++|+++..++ ++ +...++||+|++|
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig-----~~--~~~W~~gD~f~vP 301 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIG-----DA--VFRFSPKDVFVVP 301 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEEC-----CE--EEEecCCCEEEEC
Confidence 33444555433332 34444443 458889899999998 59999999999999884 44 7899999999999
Q ss_pred CCCeEEEEeCCCccEEEEEE
Q 027842 154 KGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 154 ~g~~H~~~N~g~~~a~~l~~ 173 (218)
....|...|. +++.++.+
T Consensus 302 sW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 302 SWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CCCcEecccC--CCeEEEEe
Confidence 9988877764 45665554
No 52
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.43 E-value=0.0003 Score=56.26 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=45.7
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
++...+++... +.-|.-.-+|+.||++|++++... |+ ++..++||+++||+|.--.+.-+ ..++++-+
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~-----G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv 144 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID-----GQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET-----TE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC-----CE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence 45555666653 455766679999999999988742 55 89999999999999987766543 34554443
No 53
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.25 E-value=0.007 Score=49.48 Aligned_cols=85 Identities=21% Similarity=0.177 Sum_probs=58.6
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCC---e----eEEEEeCCCcEEEECCCCeEEEEeCC-
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPEN---R----LFTKVLRPGDLFVAPKGMIHFQKNIG- 164 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~---~----~~~~~L~~GDv~~~P~g~~H~~~N~g- 164 (218)
.+++..+...||...+.|=|.++.=++.|++|+++-......+ + . -....+..|....++.+.+|.+.|.+
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~ 152 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPD-DGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSG 152 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEEST-SSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-S
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCC-cccCcccccCceEecCCCeEEecCCCCeEEeccCCC
Confidence 4677888999999999999997778889999998776554332 2 1 12345788888899999999999987
Q ss_pred CccEEEEEEecCCC
Q 027842 165 RGKAVALASLGSQN 178 (218)
Q Consensus 165 ~~~a~~l~~~~s~~ 178 (218)
+++++-+=+|+...
T Consensus 153 ~~~avSLHvYspPl 166 (175)
T PF05995_consen 153 DEPAVSLHVYSPPL 166 (175)
T ss_dssp SS-EEEEEEEES--
T ss_pred CCCEEEEEEcCCCh
Confidence 88888887777543
No 54
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0028 Score=50.56 Aligned_cols=68 Identities=25% Similarity=0.234 Sum_probs=49.5
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
.+++..+++++ ...|+ .-.-+|+-||+||++.+... |+ +..-++||++++|+|.--.+--+|. ++++-
T Consensus 99 ~l~aG~m~~~~-~tf~w--tl~yDe~d~VlEGrL~V~~~-----g~--tv~a~aGDvifiPKgssIefst~ge--a~fly 166 (176)
T COG4766 99 RLGAGLMEMKN-TTFPW--TLNYDEIDYVLEGRLHVRID-----GR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLY 166 (176)
T ss_pred ccccceeeecc-ccCcc--eecccceeEEEeeeEEEEEc-----CC--eEecCCCcEEEecCCCeEEEeccce--EEEEE
Confidence 35566667777 44443 33358999999999998774 44 7899999999999998877655544 55543
No 55
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.12 E-value=0.0017 Score=57.21 Aligned_cols=70 Identities=26% Similarity=0.280 Sum_probs=58.2
Q ss_pred EcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCCCc
Q 027842 101 FAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPG 180 (218)
Q Consensus 101 l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg 180 (218)
++||-...+|.|-+ +-+..|.+|+.+..++ |+ ++..++||+|++|.-..|...|. .+++.+++. |..|-
T Consensus 268 L~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig-----~~--rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf--sD~PV 336 (351)
T COG3435 268 LPPGFHGKAHRHTD-STIYHVVEGSGYTIIG-----GE--RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF--SDRPV 336 (351)
T ss_pred cCCcccCCceeccC-CEEEEEEecceeEEEC-----CE--EeeccCCCEEEccCcceeecccC-CcceEEEec--CCcHH
Confidence 77888888999985 8888999999998875 44 88999999999999999999985 778888875 45554
Q ss_pred e
Q 027842 181 V 181 (218)
Q Consensus 181 ~ 181 (218)
.
T Consensus 337 ~ 337 (351)
T COG3435 337 M 337 (351)
T ss_pred H
Confidence 3
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.05 E-value=0.0028 Score=48.50 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=45.4
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeC
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNI 163 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~ 163 (218)
++.....-.||. .+++-...|++++|+|++++.-. + |+ ...+++||+++||+|..=.++-.
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d--~--Ge--~v~~~aGD~~~~~~G~~g~W~V~ 105 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPD--G--GE--PVEVRAGDSFVFPAGFKGTWEVL 105 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECC--C--Ce--EEEEcCCCEEEECCCCeEEEEEe
Confidence 444555566664 45665569999999999887532 2 54 89999999999999988766543
No 57
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.0057 Score=50.03 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=57.2
Q ss_pred CCCcCCCcCCCCc-cEEEEEEeCEEEEEEEecCCC----CeeEEEEeCCC--cEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 103 PGGVNPPHFHPRA-TEILTVLKGTLEAGFVTSNPE----NRLFTKVLRPG--DLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 103 Pgg~~ppH~H~~a-~Ei~yVl~G~~~~~~~~~~~~----~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
||-...+|+|..- .+++.|++|++....++-..+ ++.....|.+- ..+.+|+|..|.+.|.+++...++.+
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~ 131 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKV 131 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEe
Confidence 8888899999877 899999999998877764321 35566777766 89999999999999999887555543
No 58
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.68 E-value=0.014 Score=47.88 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=58.4
Q ss_pred cCCCcCCCcCCC--CccEEEEEEeCEEEEEEEecCCC----CeeEEEEeCC--CcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 102 APGGVNPPHFHP--RATEILTVLKGTLEAGFVTSNPE----NRLFTKVLRP--GDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 102 ~Pgg~~ppH~H~--~a~Ei~yVl~G~~~~~~~~~~~~----~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
.+|.+..+|.|. .-..+++|++|++..-+++...+ |+.....|.+ +..++||+|..|.+...+++....+.+
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 567788899983 35899999999999888875421 5667788887 569999999999999988663333333
Q ss_pred ecCCCCce
Q 027842 174 LGSQNPGV 181 (218)
Q Consensus 174 ~~s~~pg~ 181 (218)
-..-+|+.
T Consensus 132 ~~~y~p~~ 139 (176)
T TIGR01221 132 TDYYAPEY 139 (176)
T ss_pred CCCcCccc
Confidence 22234544
No 59
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.66 E-value=0.012 Score=48.25 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=56.5
Q ss_pred cCCCcCCCcCCCCc---cEEEEEEeCEEEEEEEecCC----CCeeEEEEeCCCc--EEEECCCCeEEEEeCCCccEEEEE
Q 027842 102 APGGVNPPHFHPRA---TEILTVLKGTLEAGFVTSNP----ENRLFTKVLRPGD--LFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 102 ~Pgg~~ppH~H~~a---~Ei~yVl~G~~~~~~~~~~~----~~~~~~~~L~~GD--v~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
.+|.+..+|+|... ..++.|++|++...+++-.. -++.....|++++ .++||+|..|.+...+++..+++-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 34777889998754 68999999999888887432 1677888998886 799999999999999777444444
Q ss_pred EecCCCCcee
Q 027842 173 SLGSQNPGVV 182 (218)
Q Consensus 173 ~~~s~~pg~~ 182 (218)
+-+.-+|+..
T Consensus 131 ~t~~y~p~~e 140 (176)
T PF00908_consen 131 VTNYYDPEDE 140 (176)
T ss_dssp ESS---GGGE
T ss_pred cCCccCcccc
Confidence 4333455543
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.19 E-value=0.025 Score=47.31 Aligned_cols=71 Identities=23% Similarity=0.471 Sum_probs=48.9
Q ss_pred EEEEEEcC-CCcCCCcCCCCccEEEEEEeCEEEEEEEecCC---------------------------------CCeeEE
Q 027842 96 IARADFAP-GGVNPPHFHPRATEILTVLKGTLEAGFVTSNP---------------------------------ENRLFT 141 (218)
Q Consensus 96 ~~~~~l~P-gg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~---------------------------------~~~~~~ 141 (218)
...+-+.+ |...++|+.+ ..-++.+++|+=++.+..+.. .-+..+
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 34566666 5567899987 588899999998888776531 013478
Q ss_pred EEeCCCcEEEECCCCeEEEEeCCCcc
Q 027842 142 KVLRPGDLFVAPKGMIHFQKNIGRGK 167 (218)
Q Consensus 142 ~~L~~GDv~~~P~g~~H~~~N~g~~~ 167 (218)
.+|++||+++||+|..|+.+|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984343
No 61
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=96.09 E-value=0.033 Score=47.15 Aligned_cols=75 Identities=25% Similarity=0.369 Sum_probs=45.4
Q ss_pred EEEcCCCcCCCcCCCCccEEEEEEe-CEEEEEEEecCC--------------CCeeE------EEEeCCCcEEEECCCCe
Q 027842 99 ADFAPGGVNPPHFHPRATEILTVLK-GTLEAGFVTSNP--------------ENRLF------TKVLRPGDLFVAPKGMI 157 (218)
Q Consensus 99 ~~l~Pgg~~ppH~H~~a~Ei~yVl~-G~~~~~~~~~~~--------------~~~~~------~~~L~~GDv~~~P~g~~ 157 (218)
+-+.+|+..|.|.|..-.|=++.-- |.+.+.+..+++ +|..+ ...|+||+++-+++|..
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5678999999999988788776664 577666655431 22211 56899999999999999
Q ss_pred EEEEeCCCccEEEEEEec
Q 027842 158 HFQKNIGRGKAVALASLG 175 (218)
Q Consensus 158 H~~~N~g~~~a~~l~~~~ 175 (218)
|+++..+.. +++.=+|
T Consensus 172 H~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 172 HWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEE-TTS--EEEEEEE
T ss_pred eeEEecCCC--EEEEeee
Confidence 999876544 4444333
No 62
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.72 E-value=0.043 Score=41.40 Aligned_cols=63 Identities=30% Similarity=0.385 Sum_probs=45.7
Q ss_pred CCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECC--CCeEEEEeCCC-ccEEEEE
Q 027842 104 GGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPK--GMIHFQKNIGR-GKAVALA 172 (218)
Q Consensus 104 gg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~g~-~~a~~l~ 172 (218)
+...++|-|.+-+-+-||++|+++-. ++. |. ..+|++||+-+.-+ |+.|...|.++ +++.++=
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~--G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQ 104 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSL--GN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQ 104 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETT--SE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCC--CC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEE
Confidence 55668999997555669999998653 554 33 67899999988876 58999999887 6777653
No 63
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=95.65 E-value=0.017 Score=48.53 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=48.7
Q ss_pred EcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEE
Q 027842 101 FAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQK 161 (218)
Q Consensus 101 l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 161 (218)
=.|+.....|..+ +.|++|-.+|...+.+++. ++.+...+++||++..|+.++|+-.
T Consensus 40 GGPN~RkdyHiee-geE~FyQ~KGdMvLKVie~---g~~rDivI~qGe~flLParVpHSPq 96 (279)
T KOG3995|consen 40 GGPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ---GKHRDVVIRQGEIFLLPARVPHSPQ 96 (279)
T ss_pred cCCCcccccccCC-cchhheeecCceEEeeecc---CcceeeEEecCcEEEeccCCCCChh
Confidence 3566667788888 6999999999999999876 5667999999999999999999653
No 64
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=95.59 E-value=0.066 Score=44.36 Aligned_cols=76 Identities=25% Similarity=0.282 Sum_probs=46.7
Q ss_pred EEEEcCCCcCCCcCCCCccEEEE-EEeCEEEEEEEecC---C-----------CCeeE------EEEeCCCcEEEECCCC
Q 027842 98 RADFAPGGVNPPHFHPRATEILT-VLKGTLEAGFVTSN---P-----------ENRLF------TKVLRPGDLFVAPKGM 156 (218)
Q Consensus 98 ~~~l~Pgg~~ppH~H~~a~Ei~y-Vl~G~~~~~~~~~~---~-----------~~~~~------~~~L~~GDv~~~P~g~ 156 (218)
.+.+.||...|+|.|.+-.|=++ -=.|++.+.....+ + +++.. ...|+||+.+-+|+|+
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 35688999999999985444322 12233333332211 0 12211 4689999999999999
Q ss_pred eEEEEeCCCccEEEEEEec
Q 027842 157 IHFQKNIGRGKAVALASLG 175 (218)
Q Consensus 157 ~H~~~N~g~~~a~~l~~~~ 175 (218)
.|+++..+.. +++.-.+
T Consensus 170 ~HsFwae~g~--vlvgEvS 186 (225)
T COG3822 170 YHSFWAEEGG--VLVGEVS 186 (225)
T ss_pred eeeeeecCCc--EEEEEEe
Confidence 9999875443 4443333
No 65
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.54 E-value=0.095 Score=48.54 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=38.0
Q ss_pred cCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 110 HFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 110 H~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
-.+.+++|++++-+|++++.. +- | ...+++||.++||+|+.+++.-. ++++.+.+
T Consensus 141 f~NaDGD~Li~~q~G~l~l~T--e~--G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 141 FRNADGDELIFPQQGSLRLET--EF--G---RLDVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp EEESSEEEEEEEEES-EEEEE--TT--E---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred eEcCCCCEEEEEEECCEEEEe--cC--e---eEEEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 336678999999999998764 22 3 67899999999999999998765 56666654
No 66
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=95.44 E-value=0.089 Score=43.81 Aligned_cols=88 Identities=24% Similarity=0.289 Sum_probs=67.6
Q ss_pred CCCCceEEEEeeccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEE
Q 027842 72 NPFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFV 151 (218)
Q Consensus 72 ~~~g~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 151 (218)
...|+.+..+.... .-..+++++.+.||...|-|+|- +-|...|++|. +.+++ | ++.+||...
T Consensus 111 ~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~----~sde~--G-----~y~vgD~~~ 173 (216)
T COG3806 111 LGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGA----FSDEN--G-----EYLVGDFTL 173 (216)
T ss_pred ecCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeec----cccCC--C-----ccccCceee
Confidence 44566655554333 22457899999999999999998 69999999998 33443 2 788999999
Q ss_pred ECCCCeEEEEeCCCccEEEEEEecC
Q 027842 152 APKGMIHFQKNIGRGKAVALASLGS 176 (218)
Q Consensus 152 ~P~g~~H~~~N~g~~~a~~l~~~~s 176 (218)
-+.++-|.-.-..+.++..++++..
T Consensus 174 ~d~~v~H~piv~~~~eClcl~al~~ 198 (216)
T COG3806 174 ADGTVQHSPIVLPPGECLCLAALDG 198 (216)
T ss_pred cCCccccccccCCCCCceEEEEcCC
Confidence 9999999866667788888888754
No 67
>PF12852 Cupin_6: Cupin
Probab=95.26 E-value=0.046 Score=44.45 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=35.0
Q ss_pred cEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEe
Q 027842 116 TEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 116 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 162 (218)
.-+.+|++|+.++.+.+. + ....|++||++++|+|..|....
T Consensus 36 ~~fh~V~~G~~~l~~~~~---~--~~~~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG---G--EPIRLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred eEEEEEECCeEEEEEcCC---C--CeEEecCCCEEEEcCCCCeEeCC
Confidence 667889999999987431 2 38899999999999999999854
No 68
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.26 E-value=0.08 Score=45.83 Aligned_cols=49 Identities=27% Similarity=0.238 Sum_probs=38.6
Q ss_pred CcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCC
Q 027842 109 PHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGR 165 (218)
Q Consensus 109 pH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 165 (218)
||-+. +-++.++++|++.+... ++ .+.+++||++++|+|.+|.+....+
T Consensus 44 ~~~~~-~~~i~~~~~G~~~~~~~-----~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMK-GYILNLTIRGQGVIFNG-----GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCcc-ceEEEEEEeccEEEecC-----Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 34444 57889999999988653 44 8999999999999999998765443
No 69
>COG1741 Pirin-related protein [General function prediction only]
Probab=95.09 E-value=0.09 Score=46.14 Aligned_cols=69 Identities=30% Similarity=0.404 Sum_probs=51.9
Q ss_pred EEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCC--CeEEEEeC--CCccEEEEEE
Q 027842 99 ADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKG--MIHFQKNI--GRGKAVALAS 173 (218)
Q Consensus 99 ~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g--~~H~~~N~--g~~~a~~l~~ 173 (218)
..+.||...++|-|.+-+-+-||++|+++-. |+. |. ...+++||+-..-+| +.|...|. .++++..+=+
T Consensus 49 ~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~--Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~Ql 121 (276)
T COG1741 49 DVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSL--GN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQL 121 (276)
T ss_pred ccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecC--Cc--eeeecccceeEEcCCCceeecccCCccCCCccceeee
Confidence 4589999999999997555569999998764 443 33 679999999988765 89999997 3335555433
No 70
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.06 E-value=0.21 Score=46.32 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=43.9
Q ss_pred CcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 109 PHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 109 pH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
.-...+++|++++-+|++.+...- | ...+++||+++||+|+.+++.- .+++++.+.+
T Consensus 148 ~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~ 204 (438)
T PRK05341 148 YFYNADGELLIVPQQGRLRLATEL----G---VLDVEPGEIAVIPRGVKFRVEL-PDGPARGYVC 204 (438)
T ss_pred eeecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEEcCccEEEEec-CCCCeeEEEE
Confidence 444667899999999999886532 3 5789999999999999998863 3456666554
No 71
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.04 E-value=0.25 Score=44.00 Aligned_cols=67 Identities=25% Similarity=0.368 Sum_probs=43.8
Q ss_pred EEEEEcCCC--cCCCcCCCCccEEEEEEeCEEEEEEEecCC--------------C--CeeEEEEeCCCcEEEECCCCeE
Q 027842 97 ARADFAPGG--VNPPHFHPRATEILTVLKGTLEAGFVTSNP--------------E--NRLFTKVLRPGDLFVAPKGMIH 158 (218)
Q Consensus 97 ~~~~l~Pgg--~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~--------------~--~~~~~~~L~~GDv~~~P~g~~H 158 (218)
+.+-+.|++ ..++|+=. .+-+++=++|+=+..+..... + ....+.+|+|||++|+|+|.+|
T Consensus 116 ~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H 194 (319)
T PF08007_consen 116 ANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH 194 (319)
T ss_dssp EEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred eEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence 334567777 68899766 366777789987777765210 0 1245799999999999999999
Q ss_pred EEEeCC
Q 027842 159 FQKNIG 164 (218)
Q Consensus 159 ~~~N~g 164 (218)
.....+
T Consensus 195 ~~~~~~ 200 (319)
T PF08007_consen 195 QAVTTD 200 (319)
T ss_dssp EEEESS
T ss_pred CCCCCC
Confidence 999987
No 72
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=94.89 E-value=0.067 Score=39.39 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=34.6
Q ss_pred EEcCCCcCCCcCCCCc--cEEEEEE--eCEEEEEEEecCC----------------CCeeEEEEeCCCcEEEECCCCeEE
Q 027842 100 DFAPGGVNPPHFHPRA--TEILTVL--KGTLEAGFVTSNP----------------ENRLFTKVLRPGDLFVAPKGMIHF 159 (218)
Q Consensus 100 ~l~Pgg~~ppH~H~~a--~Ei~yVl--~G~~~~~~~~~~~----------------~~~~~~~~L~~GDv~~~P~g~~H~ 159 (218)
...+|+..++|.|+++ +=++||- ++...+.+.+++. .........++||+++||.-+.|.
T Consensus 6 i~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~ 85 (101)
T PF13759_consen 6 IYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHG 85 (101)
T ss_dssp EE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEE
T ss_pred EeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEe
Confidence 4678899999999864 2233432 2222233333211 122356788999999999999999
Q ss_pred EEeCCCccEEEEEEe
Q 027842 160 QKNIGRGKAVALASL 174 (218)
Q Consensus 160 ~~N~g~~~a~~l~~~ 174 (218)
..-...+.-++-.+|
T Consensus 86 v~p~~~~~~Risisf 100 (101)
T PF13759_consen 86 VPPNNSDEERISISF 100 (101)
T ss_dssp E----SSS-EEEEEE
T ss_pred ccCcCCCCCEEEEEc
Confidence 854333334444433
No 73
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=94.73 E-value=0.38 Score=40.26 Aligned_cols=97 Identities=24% Similarity=0.246 Sum_probs=64.8
Q ss_pred CCceEEEEeeccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCC---C-----CeeEEE---
Q 027842 74 FGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNP---E-----NRLFTK--- 142 (218)
Q Consensus 74 ~g~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~---~-----~~~~~~--- 142 (218)
....|+-+..- ....+++...-++||..+|+|-||+-+-+.-|+.|++.+.-.+--. + .+....
T Consensus 29 ~~~~i~y~~iy-----E~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~ 103 (200)
T PF07847_consen 29 SSPPITYMHIY-----EDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLV 103 (200)
T ss_pred CCCCeEEEEEE-----ECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEE
Confidence 34455555443 3335788888999999999999998777777999999886543210 0 011111
Q ss_pred ----EeCCCc-EEEECCC--CeEEEEeCCCccEEEEEEecC
Q 027842 143 ----VLRPGD-LFVAPKG--MIHFQKNIGRGKAVALASLGS 176 (218)
Q Consensus 143 ----~L~~GD-v~~~P~g--~~H~~~N~g~~~a~~l~~~~s 176 (218)
.-.+++ .+..|.. -+|.+.+.+ +++.++-++..
T Consensus 104 ~d~~~~a~~~~~vL~P~~ggNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 104 VDGEMTAPSDTCVLYPTSGGNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred ecceecCCCCCeEEccCCCCeeEEEEeCC-CCeEEEEEccC
Confidence 122333 4555654 899999987 89999998874
No 74
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.67 E-value=0.3 Score=45.33 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=43.1
Q ss_pred cCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 110 HFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 110 H~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
-.+.+++|++++-+|++.+...- | ...+++||+++||+|+.+++.-. +++++.+.+
T Consensus 142 f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~-~gp~rgyv~ 197 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKTEL----G---KLQVSPGEIVVIPRGFRFAVDLP-DGPSRGYVL 197 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEecCccEEEEecC-CCCeeEEEE
Confidence 44667899999999999876532 3 56899999999999999888532 356666544
No 75
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=94.66 E-value=0.013 Score=50.69 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=44.3
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
+.-..+.++.|.....|+|. ..|-.|||+|++.++.... .....|.+|-.+.-|.+..|... .++++++++.-
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~-----~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIR 243 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGA-----SNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYIR 243 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEE-----ETTEEEEE-TT-EE--E-------EESS-EEEEEE
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeeccc-----CCCccccCCcccccCCccccccc-ccCCCEEEEEE
Confidence 33455667777778899999 6999999999999865422 12679999999999999999998 67888888876
Q ss_pred ecC
Q 027842 174 LGS 176 (218)
Q Consensus 174 ~~s 176 (218)
.+.
T Consensus 244 tdG 246 (251)
T PF14499_consen 244 TDG 246 (251)
T ss_dssp ESS
T ss_pred ECC
Confidence 543
No 76
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.61 E-value=0.18 Score=42.19 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=44.3
Q ss_pred EEEcCCCcCCCcCCCCc--cEEEEEE--eCEEEEEEEecCC-----------C-----CeeEEEEeCCCcEEEECCCCeE
Q 027842 99 ADFAPGGVNPPHFHPRA--TEILTVL--KGTLEAGFVTSNP-----------E-----NRLFTKVLRPGDLFVAPKGMIH 158 (218)
Q Consensus 99 ~~l~Pgg~~ppH~H~~a--~Ei~yVl--~G~~~~~~~~~~~-----------~-----~~~~~~~L~~GDv~~~P~g~~H 158 (218)
..+.+|+....|.|+++ +=++||- +|...+.+.++.. + .......-++|++++||.-+.|
T Consensus 101 ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~H 180 (201)
T TIGR02466 101 NILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLRH 180 (201)
T ss_pred EEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCce
Confidence 45689999999999975 2344444 1212222222110 0 0011234589999999999999
Q ss_pred EEEeCCCccEEEEEEec
Q 027842 159 FQKNIGRGKAVALASLG 175 (218)
Q Consensus 159 ~~~N~g~~~a~~l~~~~ 175 (218)
...-...+.-++-.+|+
T Consensus 181 ~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 181 EVPPNESEEERISVSFN 197 (201)
T ss_pred ecCCCCCCCCEEEEEEe
Confidence 88543334445544443
No 77
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.58 E-value=0.18 Score=44.10 Aligned_cols=62 Identities=19% Similarity=0.109 Sum_probs=47.5
Q ss_pred cCCCcCCCcCC-CCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCC-cEEEECCCCeEEEEeCC
Q 027842 102 APGGVNPPHFH-PRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPG-DLFVAPKGMIHFQKNIG 164 (218)
Q Consensus 102 ~Pgg~~ppH~H-~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~G-Dv~~~P~g~~H~~~N~g 164 (218)
-|++...+|.| ++..|.+.|++|++.+.+.++++ .......+.+. +.-++|++..|...-.+
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g-~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG-EELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC-CeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 47788889999 67899999999999998876653 23344556664 56579999999998753
No 78
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=94.57 E-value=0.16 Score=43.07 Aligned_cols=73 Identities=22% Similarity=0.162 Sum_probs=58.1
Q ss_pred cCeEEEEEEEcCCCcCCC-cCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEE
Q 027842 92 LGISIARADFAPGGVNPP-HFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVA 170 (218)
Q Consensus 92 ~g~s~~~~~l~Pgg~~pp-H~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~ 170 (218)
-.+-+..++++||+..|. -+|- -+-=+||+||+....+. +. -..+++||.+..-+-.+.+...-|....+.
T Consensus 180 ~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn-----~d--wv~V~aGD~mwm~A~cpQacyagG~g~frY 251 (264)
T COG3257 180 FDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLN-----NN--WVPVEAGDYIWMGAYCPQACYAGGRGAFRY 251 (264)
T ss_pred cceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeec-----Cc--eEEeecccEEEeeccChhhhccCCCCceEE
Confidence 357788899999999883 5554 24568999999988774 22 789999999999999999888888776666
Q ss_pred EE
Q 027842 171 LA 172 (218)
Q Consensus 171 l~ 172 (218)
+.
T Consensus 252 Ll 253 (264)
T COG3257 252 LL 253 (264)
T ss_pred EE
Confidence 54
No 79
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.55 E-value=0.37 Score=44.68 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=43.5
Q ss_pred CcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 109 PHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 109 pH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
.-...+++|++++-+|++.+...- | ...+++||.++||+|+.+++.-.+ +++.+.+
T Consensus 142 ~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~g--p~rgyi~ 197 (429)
T TIGR01015 142 AFYNADGDFLIVPQQGALLITTEF----G---RLLVEPNEICVIPRGVRFRVTVLE--PARGYIC 197 (429)
T ss_pred eeeccCCCEEEEEEeCcEEEEEec----c---ceEecCCCEEEecCccEEEEeeCC--CceEEEE
Confidence 344566899999999999886532 3 578999999999999999987654 5555543
No 80
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.36 E-value=0.34 Score=42.05 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=45.3
Q ss_pred eEEEEEEEcCCCcC-----CCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCC
Q 027842 94 ISIARADFAPGGVN-----PPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGR 165 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~-----ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 165 (218)
+.+.++...+.... ..|.+.+.-.++++++|+..+... ++ ...+++||+++++++.+|.+.-.++
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~-----g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD-----DR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC-----Ce--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 45666665554322 134444445677889999988763 44 7899999999999999998765443
No 81
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=94.25 E-value=0.35 Score=39.15 Aligned_cols=71 Identities=25% Similarity=0.418 Sum_probs=44.4
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecC------CCCeeEEEEeCCCcEEEECCCCeEEEEeCCCcc
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSN------PENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGK 167 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~------~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 167 (218)
+++..+++.||...|+|-|. ..-++=|+.|.=+-.+..-. ++++ .+.+.+|++- .-+|.+|.+.|.+...
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~q--dk~~apgeV~-lSpgdihsv~n~~sdr 148 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQ--DKFAAPGEVH-LSPGDIHSVANTGSDR 148 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchh--hhhcCcceEe-eCCCCeeeecccCCCc
Confidence 57888999999999999997 57788888886432222111 1121 3455566655 3336666666655544
Q ss_pred E
Q 027842 168 A 168 (218)
Q Consensus 168 a 168 (218)
.
T Consensus 149 s 149 (191)
T COG5553 149 S 149 (191)
T ss_pred c
Confidence 3
No 82
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.56 E-value=0.15 Score=37.54 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=22.3
Q ss_pred eeEEEEeCCCcEEEECCCCeEEEEeCCCcc
Q 027842 138 RLFTKVLRPGDLFVAPKGMIHFQKNIGRGK 167 (218)
Q Consensus 138 ~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 167 (218)
+..+.+-++||.+++|+|..|+..|.|..-
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i 108 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDNI 108 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSEE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCceE
Confidence 346788999999999999999999998653
No 83
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.47 E-value=0.25 Score=39.80 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=41.9
Q ss_pred EEEEEEcCCCcCCCcCCCCccE----EEEEE-eCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEE
Q 027842 96 IARADFAPGGVNPPHFHPRATE----ILTVL-KGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVA 170 (218)
Q Consensus 96 ~~~~~l~Pgg~~ppH~H~~a~E----i~yVl-~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~ 170 (218)
+....+.||+.+.||.-+.... +-.++ .+...+.+. ++ .+..++|++++|.....|...|.|+++-+.
T Consensus 82 ~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~-----~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~ 154 (163)
T PF05118_consen 82 VRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG-----GE--TRHWREGECWVFDDSFEHEVWNNGDEDRVV 154 (163)
T ss_dssp EEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET-----TE--EEB--CTEEEEE-TTS-EEEEESSSS-EEE
T ss_pred EEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC-----Ce--EEEeccCcEEEEeCCEEEEEEeCCCCCEEE
Confidence 3445689999999998653222 22223 133444332 44 789999999999999999999998876544
Q ss_pred EE
Q 027842 171 LA 172 (218)
Q Consensus 171 l~ 172 (218)
+.
T Consensus 155 L~ 156 (163)
T PF05118_consen 155 LI 156 (163)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 84
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.29 E-value=0.57 Score=41.10 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=54.6
Q ss_pred CeEEEEEEEcCCC---cCCCcCCCCccEEEE---EEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCc
Q 027842 93 GISIARADFAPGG---VNPPHFHPRATEILT---VLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRG 166 (218)
Q Consensus 93 g~s~~~~~l~Pgg---~~ppH~H~~a~Ei~y---Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~ 166 (218)
.+-+....+.||+ .-|||.|++..|..+ +-++...+.+..+- ++.....++-+|+++.|+-.+|.-. |..
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p--dETrh~~v~n~~aVisP~wsih~g~--gt~ 249 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEP--QETRHIVVHNEQAVISPSWSIHSGV--GTS 249 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCc--cceeeEEEECCCEEECCCcceecCc--Ccc
Confidence 3556666778998 358999997677444 22333333333221 3323488999999999999999864 566
Q ss_pred cEEEEEEecCCC
Q 027842 167 KAVALASLGSQN 178 (218)
Q Consensus 167 ~a~~l~~~~s~~ 178 (218)
.-.+++....+|
T Consensus 250 ~y~fiw~m~gen 261 (276)
T PRK00924 250 NYTFIWGMAGEN 261 (276)
T ss_pred ccEEEEEecccC
Confidence 777787776555
No 85
>PRK10579 hypothetical protein; Provisional
Probab=92.94 E-value=2.8 Score=30.93 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=42.4
Q ss_pred CccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEe
Q 027842 114 RATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASL 174 (218)
Q Consensus 114 ~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 174 (218)
.+.|+.-|++|++++.+-++ ...+..++|+.|.+|++.--.++.. +...++|.|
T Consensus 40 ~~~E~MeivsG~l~V~Lpg~-----~ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~y 93 (94)
T PRK10579 40 AEPEEMTVISGALNVLLPGA-----TDWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCRY 93 (94)
T ss_pred CCcEEEEEEeeEEEEECCCC-----cccEEeCCCCEEEECCCCeEEEEEC--cceeeEEEc
Confidence 36899999999999988643 2478999999999999998777653 455555543
No 86
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=92.92 E-value=0.41 Score=35.53 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=42.9
Q ss_pred EEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEe
Q 027842 97 ARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASL 174 (218)
Q Consensus 97 ~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 174 (218)
..+.++||+.......++-.-++||++|++.+. +. ...+.+|+.+++..|..=...+.+ +.++++.+-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-------~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-------GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-------TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-------CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 356788887643222222366899999997652 32 368999999999977666666653 677766553
No 87
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.62 E-value=1.7 Score=39.40 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 108 PPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 108 ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
..-+.-+++|++++-+|++++...- | ..++++||..+||+|+.....-.+.+ ++.+.+
T Consensus 139 ~~f~NADge~Livpq~G~l~l~te~----G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy~~ 196 (427)
T COG3508 139 RFFRNADGELLIVPQQGELRLKTEL----G---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYGC 196 (427)
T ss_pred hhhhcCCCCEEEEeecceEEEEEee----c---eEEecCCcEEEeeCCceEEEEecCCc-eEEEEE
Confidence 3445667899999999999875432 3 78999999999999999988765544 555543
No 88
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=92.22 E-value=1.2 Score=32.90 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=43.1
Q ss_pred EEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEe
Q 027842 100 DFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASL 174 (218)
Q Consensus 100 ~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 174 (218)
.+.||. .+..-.+.|+.-|++|++++.+-++ . ..+..++|+.|.+|++.--.++-. ++..++|.|
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~---~--ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGE---D--EWQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEETT----S--S-EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCC---c--ccEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 466665 2333346899999999999998533 2 378999999999999998877763 566666654
No 89
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=92.17 E-value=2.2 Score=33.14 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=42.5
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCc
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRG 166 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~ 166 (218)
+.+.++.....-.....-+.+.--+.+.++|+..+... ++ +..+.+||+++++.+.++...-.++.
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~-----g~--~~~~~pg~~~l~d~~~~~~~~~~~~~ 99 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQG-----GR--EVELAPGDVVLLDPGQPYRLEFSAGC 99 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEEC-----CE--EEEEcCCeEEEEcCCCCEEEEECCCc
Confidence 34555555433222111123234566778899887763 44 89999999999999999988765433
No 90
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=92.11 E-value=1.7 Score=31.11 Aligned_cols=62 Identities=16% Similarity=0.053 Sum_probs=42.8
Q ss_pred CCcCCCcCC-CCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCC
Q 027842 104 GGVNPPHFH-PRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGR 165 (218)
Q Consensus 104 gg~~ppH~H-~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 165 (218)
-+....|.- .+.-.-+.|++|++.+...++.++--.....+.+|+..++++...|.+.-.++
T Consensus 13 ~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 13 AALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 334445543 33456778999999998876542111247789999999999999999987765
No 91
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=91.88 E-value=0.71 Score=31.37 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=41.1
Q ss_pred EEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEe
Q 027842 99 ADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 99 ~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 162 (218)
..+.||....++... +.+ +.|.+|++.++.. +....+.|++||.+.+++|..-+...
T Consensus 2 ~~L~~g~~~~lr~~~-~~~-l~v~~G~vWlT~~-----g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-GQR-LRVESGRVWLTRE-----GDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC-CcE-EEEccccEEEECC-----CCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 356677766666444 344 8899999988764 33358999999999999997655543
No 92
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=0.13 Score=48.18 Aligned_cols=61 Identities=23% Similarity=0.386 Sum_probs=43.1
Q ss_pred cCCC-cCCCcCCCCccEEEEEEeCEEEEEEEecCC------------------CCeeEEEEeCCCcEEEECCCCeEEEEe
Q 027842 102 APGG-VNPPHFHPRATEILTVLKGTLEAGFVTSNP------------------ENRLFTKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 102 ~Pgg-~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~------------------~~~~~~~~L~~GDv~~~P~g~~H~~~N 162 (218)
+||. ..+|||-. -+-++.-++|+=...+..+.- +.-+.+..|++||++|||+|.+|...-
T Consensus 325 PagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 4454 47899987 366677899987665543320 122456789999999999999998754
Q ss_pred C
Q 027842 163 I 163 (218)
Q Consensus 163 ~ 163 (218)
.
T Consensus 404 ~ 404 (629)
T KOG3706|consen 404 P 404 (629)
T ss_pred c
Confidence 3
No 93
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.59 E-value=1.2 Score=40.92 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=41.1
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEE
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQK 161 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 161 (218)
+.+.++++.++.. +...++.++++|++|++++.. . +. +..|++|+++++|++......
T Consensus 321 F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~--~---~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWK--G---EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCceE---EecCCCcEEEEEEcceEEEEe--C---Ce--EEEECCCCEEEEeCCCccEEE
Confidence 5666777755422 222245799999999998753 1 33 678999999999998776554
No 94
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=90.31 E-value=2.4 Score=37.42 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=41.8
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQK 161 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 161 (218)
-+++.++++..... ...+ .+-.+++|++|++++... +. +..|++|+++++|++......
T Consensus 234 ~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~~-----~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKSG-----GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEEC-----CE--EEEEecccEEEEccCCccEEE
Confidence 46777777754321 1123 367899999999987541 33 788999999999999866554
No 95
>PLN02288 mannose-6-phosphate isomerase
Probab=89.91 E-value=1.1 Score=41.28 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=40.1
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCC
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGM 156 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~ 156 (218)
.+++.++++.++.......+. +.++++|++|++++... +...+..|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~~-gp~Illv~~G~~~i~~~-----~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAVP-GPSVFLVIEGEGVLSTG-----SSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCCC-CCEEEEEEcCEEEEecC-----CccceEEEeceeEEEEeCCC
Confidence 467788888777542222233 58899999999987532 22123679999999999864
No 96
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.69 E-value=1.8 Score=39.38 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=51.4
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
.+++.++++++|...-.-.-+ +.-++.|++|++++...+ +. ...+++||+++||+...-.+. ..+++...+-
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t----~~--~~~v~rG~V~fI~a~~~i~~~-~~sd~~~~yr 403 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDT----DS--KILVNRGDVLFIPANHPIHLS-SSSDPFLGYR 403 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCC----CC--ceeeccCcEEEEcCCCCceee-ccCcceeeee
Confidence 467778888886553333334 577999999999887643 22 789999999999999776443 3455555554
Q ss_pred Eec
Q 027842 173 SLG 175 (218)
Q Consensus 173 ~~~ 175 (218)
++.
T Consensus 404 Af~ 406 (411)
T KOG2757|consen 404 AFS 406 (411)
T ss_pred ccc
Confidence 443
No 97
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=88.72 E-value=4.6 Score=33.79 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=49.0
Q ss_pred CeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEE
Q 027842 93 GISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALA 172 (218)
Q Consensus 93 g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 172 (218)
+.......+++|...-..-.+ ...+++|++|.+.+...+.+| ++.....+.+||++-+..+.++.....--++++++.
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G-~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~ 112 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDG-RRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL 112 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCC-cEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence 345566778888765443333 578899999999998876653 333455678999887665544433222234454443
No 98
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=88.01 E-value=5.4 Score=32.35 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=37.3
Q ss_pred EEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEE
Q 027842 97 ARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVA 152 (218)
Q Consensus 97 ~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 152 (218)
....+++|...-..-.+ ...+++|++|.+.+...+.+| ++.....+.+||.+-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEEee
Confidence 34567888765433233 578999999999987765553 3445567899999843
No 99
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=85.41 E-value=1.2 Score=40.57 Aligned_cols=62 Identities=27% Similarity=0.354 Sum_probs=44.5
Q ss_pred EcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecC-C--------------CCeeEEEEeCCCcEEEECCCCeEEEEeC
Q 027842 101 FAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSN-P--------------ENRLFTKVLRPGDLFVAPKGMIHFQKNI 163 (218)
Q Consensus 101 l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~-~--------------~~~~~~~~L~~GDv~~~P~g~~H~~~N~ 163 (218)
.++||.+.+|+-+. +-+++-..|+=+..+.... . ..-....++.|||+.|+|+|.+|+-...
T Consensus 126 a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 126 AAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred ecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 56899999999885 7666666776666554321 0 0111346899999999999999998765
No 100
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=84.70 E-value=0.7 Score=34.11 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=7.2
Q ss_pred ChhhHHHHHHHH
Q 027842 1 MAARILLLAALV 12 (218)
Q Consensus 1 m~~~~~~~~~~~ 12 (218)
|+++.++++.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 898765544333
No 101
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=84.47 E-value=15 Score=31.91 Aligned_cols=98 Identities=26% Similarity=0.303 Sum_probs=50.4
Q ss_pred ceEEEEeeccCCCCcccCeEEEEEEEcCCC-c--CCCcCCCCc--------cEEEEE-Ee---CEEEEEEEecCCCCeeE
Q 027842 76 SIATRITVTQVPGFNTLGISIARADFAPGG-V--NPPHFHPRA--------TEILTV-LK---GTLEAGFVTSNPENRLF 140 (218)
Q Consensus 76 ~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg-~--~ppH~H~~a--------~Ei~yV-l~---G~~~~~~~~~~~~~~~~ 140 (218)
..|..+...+.+... .+-+..+. .|+| . -|||.|++. +|+.|- +. |-+.-.+.+.++ ..-.
T Consensus 135 R~V~~~i~~~~~~~~--~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~-~~d~ 210 (261)
T PF04962_consen 135 RTVRNIIDPNVPPAS--RLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDP-QLDE 210 (261)
T ss_dssp EEEEEEESTTT---S--S-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTS-SSEE
T ss_pred EEEEEeeCCCCcccc--eEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCC-CCcE
Confidence 455555555554222 34555554 5555 3 589999963 455554 22 333222222221 1125
Q ss_pred EEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCC
Q 027842 141 TKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQN 178 (218)
Q Consensus 141 ~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~ 178 (218)
...++-||++.+|+| .|-+...-....-+++++...+
T Consensus 211 ~~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 211 HYVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 789999999999999 3333332223455777776665
No 102
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=82.95 E-value=3.4 Score=28.13 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=31.6
Q ss_pred EEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCe-eEEEEeCCCcEE
Q 027842 100 DFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENR-LFTKVLRPGDLF 150 (218)
Q Consensus 100 ~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~-~~~~~L~~GDv~ 150 (218)
.+++|...-.. +.....+++|++|.+.+...+.+ ++ .....+.+||.+
T Consensus 3 ~~~~g~~i~~~-g~~~~~~~~i~~G~v~~~~~~~~--~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQ-GDPCDHIYIILSGEVKVSSINED--GKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEET-TSBESEEEEEEESEEEEEEETTT--SEEEEEEEEETTEEE
T ss_pred EECCCCEEEeC-CCcCCEEEEEEECceEEEeceec--ceeeeecceeeeccc
Confidence 34555443222 22258999999999999887664 33 235678888877
No 103
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=82.21 E-value=10 Score=33.97 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=40.1
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEE
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQK 161 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 161 (218)
+++.+.++..-... .+ + ++-.+++|++|++++... ++ +..|++|+.+++|+...-+..
T Consensus 242 F~l~~~~i~~~~~~-~~-~-~~~~il~v~eG~~~l~~~-----~~--~~~l~~G~s~~ipa~~~~~~i 299 (312)
T COG1482 242 FALYKWDISGTAEF-IK-Q-ESFSILLVLEGEGTLIGG-----GQ--TLKLKKGESFFIPANDGPYTI 299 (312)
T ss_pred eEEEEEeccChhhh-cc-C-CCcEEEEEEcCeEEEecC-----CE--EEEEcCCcEEEEEcCCCcEEE
Confidence 56666665541111 11 2 268999999999988653 33 899999999999999554443
No 104
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=81.34 E-value=11 Score=30.48 Aligned_cols=67 Identities=13% Similarity=-0.008 Sum_probs=49.4
Q ss_pred CCCcCCCCccEEEEEEeCEEEEEEEecCCC---CeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 107 NPPHFHPRATEILTVLKGTLEAGFVTSNPE---NRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 107 ~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~---~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
..+-.|+.++|.++-+.|+-.+-++..+++ .++.....++|+.+.+-+|++|.-.-.=+.+..++.+
T Consensus 71 ~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vv 140 (162)
T PRK03606 71 RMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVV 140 (162)
T ss_pred eeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEE
Confidence 345668889999999999988877765421 3567889999999999999999654332344555444
No 105
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=78.91 E-value=9.2 Score=30.78 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=35.2
Q ss_pred EEEEcCCCcCCCcCCC-CccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEE
Q 027842 98 RADFAPGGVNPPHFHP-RATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVA 152 (218)
Q Consensus 98 ~~~l~Pgg~~ppH~H~-~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 152 (218)
...+++|...-..--+ ....+++|++|.+.+...+.+| .+.....+.+||++=.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G-~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG-NALTLRYVRPGEYFGE 62 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCeech
Confidence 3456666554222121 2477999999999998877663 3445566799998744
No 106
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=77.77 E-value=13 Score=25.95 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=35.7
Q ss_pred EEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEE
Q 027842 98 RADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVA 152 (218)
Q Consensus 98 ~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 152 (218)
...+.+|...- +.......+.+|++|.+.+...+.++ +......+.+||.+-.
T Consensus 19 ~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 19 PVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDG-REQILGILGPGDFFGE 71 (120)
T ss_pred EEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCC-ceEEEEeecCCceech
Confidence 35677777542 33333578999999999987765442 3445677889997743
No 107
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.62 E-value=8.7 Score=27.81 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=33.9
Q ss_pred ccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEE
Q 027842 115 ATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQ 160 (218)
Q Consensus 115 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~ 160 (218)
+.|+..|+.|.+++.+.+++ ..++..+|+.|.+|.+.-.-.
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs~-----dWq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 41 APEEMTVVSGALTVLLPGSD-----DWQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CceEEEEEeeEEEEEcCCCc-----ccEEecCCceEEcCCCCeEEE
Confidence 68999999999999886542 488999999999999865444
No 108
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=77.19 E-value=11 Score=26.18 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=34.3
Q ss_pred EEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEE
Q 027842 98 RADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFV 151 (218)
Q Consensus 98 ~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 151 (218)
...+++|...-..--+ ...+.+|++|.+.+...+.+| .+.....+.+|+.+-
T Consensus 19 ~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g 70 (115)
T cd00038 19 ERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDG-REQIVGFLGPGDLFG 70 (115)
T ss_pred eeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCC-cEEEEEecCCccCcC
Confidence 3457777754222222 477999999999988766542 234566788888773
No 109
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=76.79 E-value=4.6 Score=36.29 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=35.7
Q ss_pred CeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCCCceee
Q 027842 137 NRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVVT 183 (218)
Q Consensus 137 ~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~ 183 (218)
.+..+-..++|+++++|.|..|-+.|...+-|+---..+.+|.+++-
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw 306 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVW 306 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceee
Confidence 45567889999999999999999999876655555444556666553
No 110
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=76.33 E-value=23 Score=31.21 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=37.8
Q ss_pred CccEE-EEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEe--CCCccEEEEEE
Q 027842 114 RATEI-LTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKN--IGRGKAVALAS 173 (218)
Q Consensus 114 ~a~Ei-~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N--~g~~~a~~l~~ 173 (218)
+..|+ ++.+.|++++.+. ++ ++.|.+.|.+++|+|..-.... ....++++...
T Consensus 72 ~rrE~giV~lgG~~~V~vd-----G~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 72 ERRELGIINIGGAGTVTVD-----GE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred CCcEEEEEEccceEEEEEC-----CE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 34665 5678899998863 54 6779999999999998765553 22356666654
No 111
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=76.01 E-value=14 Score=29.86 Aligned_cols=67 Identities=16% Similarity=0.053 Sum_probs=41.0
Q ss_pred CCcCCCCccEEEEEEeCEE-EEEEEecCC---C-CeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEe
Q 027842 108 PPHFHPRATEILTVLKGTL-EAGFVTSNP---E-NRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASL 174 (218)
Q Consensus 108 ppH~H~~a~Ei~yVl~G~~-~~~~~~~~~---~-~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 174 (218)
.+-.|+.++|.++-+.|+. .+-++..++ + +++....+.+|+.+.+-+|++|.-.-.=++++.++.+-
T Consensus 73 ~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~ 144 (165)
T PF04115_consen 73 MLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVD 144 (165)
T ss_dssp EEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEE
T ss_pred eeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEe
Confidence 3556888999999999988 555554432 1 45678999999999999999997644334667666664
No 112
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=75.82 E-value=21 Score=31.03 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=44.4
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCC--------cEEEECCCCeEEEEeCCC
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPG--------DLFVAPKGMIHFQKNIGR 165 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~G--------Dv~~~P~g~~H~~~N~g~ 165 (218)
+.+..++|++|.....-... .+-.++.++|++++.+. ++ ..+.+..- |.+++|+|..-.+...++
T Consensus 27 ~~~~~l~L~~g~~~~~~~~~-~E~~vv~l~G~~~v~~~-----g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELER-RELGVVNLGGKATVTVD-----GE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD 99 (261)
T ss_dssp BECCCEEEECCHCCCCCCCS-EEEEEEEESSSEEEEET-----TE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST
T ss_pred cceEEEEecCCCEEeccCCC-cEEEEEEeCCEEEEEeC-----Cc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC
Confidence 34556788888766555333 24455678999999873 32 36777777 999999999988877544
Q ss_pred ccEEEE
Q 027842 166 GKAVAL 171 (218)
Q Consensus 166 ~~a~~l 171 (218)
+++.
T Consensus 100 --ae~~ 103 (261)
T PF04962_consen 100 --AEFA 103 (261)
T ss_dssp --EEEE
T ss_pred --CEEE
Confidence 5444
No 113
>PHA02984 hypothetical protein; Provisional
Probab=75.33 E-value=19 Score=31.50 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=40.8
Q ss_pred ccEEE--EEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE
Q 027842 115 ATEIL--TVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS 173 (218)
Q Consensus 115 a~Ei~--yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 173 (218)
..|.+ .+++|+..+..... ++..+..+++||.|.+.-+.-|...- .+..+.++.+
T Consensus 91 snEy~FvlCl~G~~~I~~~~~---~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~Vi 147 (286)
T PHA02984 91 SNEYMFVLCLNGKTSIECFNK---GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAVI 147 (286)
T ss_pred eccEEEEEEcCCeEEEEEecC---CceeeeEEecCceEEEEccceEEEEe-CCCceEEEEE
Confidence 34544 46889998887654 45579999999999999999999864 3455555443
No 114
>PHA02890 hypothetical protein; Provisional
Probab=72.17 E-value=39 Score=29.48 Aligned_cols=59 Identities=10% Similarity=0.187 Sum_probs=42.1
Q ss_pred ccEEE--EEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEE-ecCCCC
Q 027842 115 ATEIL--TVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALAS-LGSQNP 179 (218)
Q Consensus 115 a~Ei~--yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~-~~s~~p 179 (218)
..|.+ .+++|+..+..... ++..+..+++||.|.+.-+.-|...- ..+.++.+ +.+..|
T Consensus 90 SnEy~FVlCL~Gs~~In~~~~---d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~p 151 (278)
T PHA02890 90 KIECFFVACIEGSCKINVNIG---DREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAH 151 (278)
T ss_pred eccEEEEEEeCCeEEEEEecC---CceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecce
Confidence 35555 46889999887643 56679999999999999999999865 44444433 333333
No 115
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=72.16 E-value=14 Score=30.63 Aligned_cols=52 Identities=6% Similarity=-0.009 Sum_probs=35.6
Q ss_pred EEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEE
Q 027842 99 ADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVA 152 (218)
Q Consensus 99 ~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 152 (218)
..+++|...-.. ......+++|++|.+.+...+.+| .+.....+.+||++-.
T Consensus 34 ~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G-~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 34 FHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG-KVSLIDFFAAPCFIGE 85 (226)
T ss_pred eeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC-CEeeeeecCCCCeEEe
Confidence 456677654322 223578999999999998877663 3344566889998854
No 116
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=71.75 E-value=3.5 Score=36.90 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.4
Q ss_pred eEEEEeCCCcEEEECCCCeEEEE
Q 027842 139 LFTKVLRPGDLFVAPKGMIHFQK 161 (218)
Q Consensus 139 ~~~~~L~~GDv~~~P~g~~H~~~ 161 (218)
+....|+|||.+++|+|.+|.+.
T Consensus 157 Ln~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 157 LNRVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred hcEEecCCCCEEEecCCCceeec
Confidence 34689999999999999999884
No 117
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=71.43 E-value=4.3 Score=37.40 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=20.9
Q ss_pred eEEEEeCCCcEEEECCCCeEEEEe
Q 027842 139 LFTKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 139 ~~~~~L~~GDv~~~P~g~~H~~~N 162 (218)
+....|++||.+++|+|.+|.+..
T Consensus 236 LN~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEEcC
Confidence 457889999999999999998853
No 118
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=71.08 E-value=2.2 Score=37.59 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=18.8
Q ss_pred EEEEeCCCcEEEECCCCeEEE
Q 027842 140 FTKVLRPGDLFVAPKGMIHFQ 160 (218)
Q Consensus 140 ~~~~L~~GDv~~~P~g~~H~~ 160 (218)
....+++||++++|+|.+|..
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 467899999999999999983
No 119
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=70.95 E-value=49 Score=25.97 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=53.9
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeC-EEEEEEEecCCCCeeEEEEeCC----Cc--EEEECCCCeEEEEeCCCc
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKG-TLEAGFVTSNPENRLFTKVLRP----GD--LFVAPKGMIHFQKNIGRG 166 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G-~~~~~~~~~~~~~~~~~~~L~~----GD--v~~~P~g~~H~~~N~g~~ 166 (218)
.+....-+.++....+|.= +++|+.+-..| .+++.+..++ ++..+..|.. |+ .+++|+|.....+..+..
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d--g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~ 117 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD--GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEG 117 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT--STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESS
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC--CCeEEEEECCCCCCCceEEEEECCCEEEEccccCCC
Confidence 3444455777766666654 57999999998 5888888776 5656666643 43 579999999988655555
Q ss_pred cEEEEEEecCCCCcee
Q 027842 167 KAVALASLGSQNPGVV 182 (218)
Q Consensus 167 ~a~~l~~~~s~~pg~~ 182 (218)
.-.+++.. --||+.
T Consensus 118 ~y~Lvsc~--VaPGF~ 131 (139)
T PF06172_consen 118 DYSLVSCT--VAPGFD 131 (139)
T ss_dssp SEEEEEEE--ESSC--
T ss_pred CEEEEEEE--EcCCCc
Confidence 55555443 225553
No 120
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=69.83 E-value=16 Score=32.13 Aligned_cols=46 Identities=7% Similarity=-0.051 Sum_probs=37.5
Q ss_pred cEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCcc
Q 027842 116 TEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGK 167 (218)
Q Consensus 116 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 167 (218)
.-++++.+|.+++...+ + ....+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~----g--~~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS----G--EYITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC----C--ceEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 46889999999886532 3 2689999999999999999999876554
No 121
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=69.32 E-value=16 Score=30.97 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=57.3
Q ss_pred cCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecCCCCcee--e
Q 027842 106 VNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGSQNPGVV--T 183 (218)
Q Consensus 106 ~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~--~ 183 (218)
....|| ++..++|++|+...... |+....+.++||..+.|+|......=.. .+-++.--..--|... -
T Consensus 113 hsGrh~---ad~y~tIL~G~~~~~~~-----g~~~~evy~pGd~~~l~rg~a~~y~m~~--~tw~LEY~RG~IP~~lpf~ 182 (216)
T PF04622_consen 113 HSGRHW---ADDYFTILSGEQWAWSP-----GSLEPEVYKPGDSHHLPRGEAKQYQMPP--GTWALEYGRGWIPSMLPFG 182 (216)
T ss_pred CCcceE---eeeEEEEEEEEEEEEcC-----CCCCceEeccCCEEEecCceEEEEEeCC--CeEEEEecCCchhhhhHHH
Confidence 344454 67789999999876542 4556889999999999999998876543 3333332112222211 2
Q ss_pred eccccccCCCCCCHHHHHHHcCCCHHH
Q 027842 184 VPNTVFGSHPKISTDILAKAFQVDQFR 210 (218)
Q Consensus 184 i~~~~f~~~p~~p~~vl~~af~~~~~~ 210 (218)
+++.+|.+ ++-..+-++..+..++
T Consensus 183 ~~dt~~sT---lDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 183 FADTLFST---LDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHHhc---cchHHHHHHHHHHHHH
Confidence 33556664 6666666666655543
No 122
>PLN02868 acyl-CoA thioesterase family protein
Probab=69.31 E-value=19 Score=33.13 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=36.7
Q ss_pred EEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEE
Q 027842 98 RADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVA 152 (218)
Q Consensus 98 ~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 152 (218)
...+++|..+-.--.+ ...+++|++|++++...+.+ ++.....+++||++-.
T Consensus 33 ~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~--ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 33 PKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEE--ESRPEFLLKRYDYFGY 84 (413)
T ss_pred EEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCC--CcEEEEEeCCCCEeeh
Confidence 3567777665333233 57899999999998776654 4445677899998863
No 123
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=64.41 E-value=31 Score=29.85 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=55.1
Q ss_pred CeEEEEEEEcCCCc---CCCcCCCCccEEEEEE---eCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCc
Q 027842 93 GISIARADFAPGGV---NPPHFHPRATEILTVL---KGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRG 166 (218)
Q Consensus 93 g~s~~~~~l~Pgg~---~ppH~H~~a~Ei~yVl---~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~ 166 (218)
-+++....++||.+ .|+|.|.|..|..+-. +-+-.+.+.... .+.....++--+.++-|+-.+|.-. |..
T Consensus 176 QL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP--~ETRHiv~~NEqAViSP~WSIHSG~--GT~ 251 (278)
T COG3717 176 QLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP--QETRHIVMHNEQAVISPPWSIHSGV--GTA 251 (278)
T ss_pred hhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC--CceeEEEEeccceeeCCCceeecCc--ccc
Confidence 34566667999985 5899999988876432 222233343322 3334677888888889999999763 556
Q ss_pred cEEEEEEecCCCC
Q 027842 167 KAVALASLGSQNP 179 (218)
Q Consensus 167 ~a~~l~~~~s~~p 179 (218)
.-.++++...+|-
T Consensus 252 ~YtFIWaMaGeN~ 264 (278)
T COG3717 252 NYTFIWAMAGENQ 264 (278)
T ss_pred ceEEEEEeccccc
Confidence 6777777765553
No 124
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=62.40 E-value=49 Score=27.00 Aligned_cols=68 Identities=13% Similarity=-0.022 Sum_probs=48.8
Q ss_pred CCcCCCCccEEEEEEeC-EEEEEEEecCCC---CeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEec
Q 027842 108 PPHFHPRATEILTVLKG-TLEAGFVTSNPE---NRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLG 175 (218)
Q Consensus 108 ppH~H~~a~Ei~yVl~G-~~~~~~~~~~~~---~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 175 (218)
..-.|+.+++.+.-+.| ...+.++.++++ +.+.......|+.+.+-+|++|.-.-.=+.+..++++-.
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvdr 143 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVDR 143 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEeC
Confidence 35568888999999999 766666644321 346789999999999999999976443344555665543
No 125
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.84 E-value=4 Score=34.59 Aligned_cols=41 Identities=29% Similarity=0.301 Sum_probs=34.1
Q ss_pred ccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEE
Q 027842 91 TLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFV 131 (218)
Q Consensus 91 ~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~ 131 (218)
.-++|+...-++|++++|.|-||+-.-+.-++-|++.+.-.
T Consensus 72 cD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksy 112 (236)
T KOG4281|consen 72 CDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSY 112 (236)
T ss_pred cCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeec
Confidence 33678888999999999999999877777788999887543
No 126
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=59.94 E-value=93 Score=26.95 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=47.0
Q ss_pred EEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecC-C--CCeeEEEEeCCCcEEEECCCCeEEEEeCCCc
Q 027842 95 SIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSN-P--ENRLFTKVLRPGDLFVAPKGMIHFQKNIGRG 166 (218)
Q Consensus 95 s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~-~--~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~ 166 (218)
.+...+|.+|.....-.-.+ +-++++++|++++...+.. + +.|.-.++=++-|++++|.|..-.....++-
T Consensus 30 GF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~ 103 (270)
T COG3718 30 GFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDL 103 (270)
T ss_pred EEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecce
Confidence 45556789998877665553 5566789999988654321 0 0232234445779999999999888765543
No 127
>PHA00672 hypothetical protein
Probab=59.90 E-value=65 Score=25.21 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=52.0
Q ss_pred cCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccE
Q 027842 92 LGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKA 168 (218)
Q Consensus 92 ~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a 168 (218)
.|+....+.++.|....--.|. -+-+++.+|.+++..+ +. .+.|+.-.++.-|+|.....+...++..
T Consensus 45 ~GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~td-----ge--~~rl~g~~~i~~~aG~KragyAHeDT~w 112 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIG-----GE--AVELRGYHVIPASAGRKQAFVAHADTDL 112 (152)
T ss_pred cceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeC-----Cc--EEEEecceeeecCCCcccceeeeccceE
Confidence 3788888999999887766676 4455999999998764 22 7789988899999998877766544433
No 128
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=59.60 E-value=86 Score=24.75 Aligned_cols=54 Identities=13% Similarity=0.008 Sum_probs=40.0
Q ss_pred CCcCCCCccEEEEEEeCEEEEEEEecCC----------------CCeeEEEEeCCCcEEEECCCCeEEEE
Q 027842 108 PPHFHPRATEILTVLKGTLEAGFVTSNP----------------ENRLFTKVLRPGDLFVAPKGMIHFQK 161 (218)
Q Consensus 108 ppH~H~~a~Ei~yVl~G~~~~~~~~~~~----------------~~~~~~~~L~~GDv~~~P~g~~H~~~ 161 (218)
.+-.|.+=..+-|+++|+=.+++..... .+......|++|+.++|.++..|.-.
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4556777799999999998887754321 01113678999999999999999865
No 129
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=58.99 E-value=89 Score=25.67 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=33.2
Q ss_pred EEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEE
Q 027842 100 DFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVA 152 (218)
Q Consensus 100 ~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 152 (218)
.+++|...-.- -.....+++|++|.+.+...+++| ++.....+.+||++-.
T Consensus 41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G-~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQG-DEQITGFHLAGDLVGF 91 (235)
T ss_pred eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCC-CEEEEEeccCCceecc
Confidence 46666543222 222577899999999998877663 3334445689999854
No 130
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=57.32 E-value=44 Score=26.32 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=35.7
Q ss_pred EEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECC
Q 027842 98 RADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPK 154 (218)
Q Consensus 98 ~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~ 154 (218)
...+++|...-..--+ +.-+.+|++|.+.+.....+| .+.....+.+||.+-...
T Consensus 25 ~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 25 VRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDG-REIILGFLGPGDFFGELA 79 (214)
T ss_pred eEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCC-cEEEEEEecCCchhhhHH
Confidence 3456666443333233 455889999999998887663 333445688999986553
No 131
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=57.28 E-value=71 Score=24.82 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCCcCCCcCCCCccEEEEEEeCEEEEEEE
Q 027842 103 PGGVNPPHFHPRATEILTVLKGTLEAGFV 131 (218)
Q Consensus 103 Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~ 131 (218)
|-....+-.|.+=..+-|+++|+=++++.
T Consensus 57 ~~~~~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 57 EPVSKKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred ChhhcchhhhhheEEEEEeecceEEEEEe
Confidence 33334456677779999999999888885
No 132
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=57.02 E-value=27 Score=27.66 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=27.1
Q ss_pred ccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEE
Q 027842 115 ATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFV 151 (218)
Q Consensus 115 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 151 (218)
...+++|++|.+.+...+.+| .+.....+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G-~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESG-EEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCC-cEeeeEEccCCCEee
Confidence 466889999999998876653 333456789999774
No 133
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=56.73 E-value=50 Score=25.99 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=38.7
Q ss_pred cEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEE---eCCCccEEEEEE
Q 027842 116 TEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQK---NIGRGKAVALAS 173 (218)
Q Consensus 116 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~---N~g~~~a~~l~~ 173 (218)
.=+++|++|+=++.++ ++ .+...+|+.++.+.+++-... ...++|...+.+
T Consensus 24 p~i~~vlQG~K~~~~g-----~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLG-----DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CeEEEEEeeeEEEEEC-----Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 4589999999988885 33 789999999999999886553 334556665554
No 134
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=54.88 E-value=7.1 Score=35.72 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=42.0
Q ss_pred CCCcCCCc---CCCCccEEEEEEeCEEEEEEEecCC-----------------------CCeeEEEEeCCCcEEEECCCC
Q 027842 103 PGGVNPPH---FHPRATEILTVLKGTLEAGFVTSNP-----------------------ENRLFTKVLRPGDLFVAPKGM 156 (218)
Q Consensus 103 Pgg~~ppH---~H~~a~Ei~yVl~G~~~~~~~~~~~-----------------------~~~~~~~~L~~GDv~~~P~g~ 156 (218)
.|...|.| +|. .-+-..+-|+=+.-+..+.+ .+...+..=++|+++++|.|.
T Consensus 207 ~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 35567778 554 44566777776665554431 012223445799999999999
Q ss_pred eEEEEeCCCc
Q 027842 157 IHFQKNIGRG 166 (218)
Q Consensus 157 ~H~~~N~g~~ 166 (218)
.|...|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999886
No 135
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=52.01 E-value=1.1e+02 Score=23.85 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=36.6
Q ss_pred CeEEEEEEEcCC--CcCCCcCCCCccEEEEEEeCEEEEEEEe-cCC-----------------CCe-eEEEEeCCCcEEE
Q 027842 93 GISIARADFAPG--GVNPPHFHPRATEILTVLKGTLEAGFVT-SNP-----------------ENR-LFTKVLRPGDLFV 151 (218)
Q Consensus 93 g~s~~~~~l~Pg--g~~ppH~H~~a~Ei~yVl~G~~~~~~~~-~~~-----------------~~~-~~~~~L~~GDv~~ 151 (218)
++.+...+.... ....+-.|.+-..+-|+++|+=++++.. ... +++ .....|++|+.++
T Consensus 45 ~~~~~v~~~~t~~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~i 124 (153)
T PF04074_consen 45 DLFANVQEYETKPEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAI 124 (153)
T ss_dssp S-EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEE
T ss_pred cEEEEeeccccccccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEE
Confidence 344444444333 3344666888899999999998888832 210 111 1246799999999
Q ss_pred ECCCCeEEE
Q 027842 152 APKGMIHFQ 160 (218)
Q Consensus 152 ~P~g~~H~~ 160 (218)
|-++.+|.-
T Consensus 125 ffP~d~H~p 133 (153)
T PF04074_consen 125 FFPEDAHRP 133 (153)
T ss_dssp E-TT--EEE
T ss_pred ECCCccccc
Confidence 999999984
No 136
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=51.55 E-value=69 Score=26.39 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=34.5
Q ss_pred EEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEE
Q 027842 98 RADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFV 151 (218)
Q Consensus 98 ~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 151 (218)
...+++|...- +-......+++|++|.+.+.....+ ++..-..+.+||.+-
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~--~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD--RETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC--ceEEEEEeCCCchhh
Confidence 35577776543 2333467899999999998765432 454567788999764
No 137
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=50.88 E-value=35 Score=24.17 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=38.3
Q ss_pred EEEcCCCcCCCcCCC---CccEEEEE--Ee-CE-----EEEEEEecC-CCCeeEEEE-----eCCCcEEEECC-CCeEEE
Q 027842 99 ADFAPGGVNPPHFHP---RATEILTV--LK-GT-----LEAGFVTSN-PENRLFTKV-----LRPGDLFVAPK-GMIHFQ 160 (218)
Q Consensus 99 ~~l~Pgg~~ppH~H~---~a~Ei~yV--l~-G~-----~~~~~~~~~-~~~~~~~~~-----L~~GDv~~~P~-g~~H~~ 160 (218)
..+.+|+...||+.. ....+-++ +. .. +.+.+.... .++...... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 346888888899865 32333222 33 11 233333210 001222333 88999999999 999998
Q ss_pred EeCCCccEE
Q 027842 161 KNIGRGKAV 169 (218)
Q Consensus 161 ~N~g~~~a~ 169 (218)
.-.+....+
T Consensus 84 ~~v~~~~~R 92 (100)
T PF13640_consen 84 TPVGEGGRR 92 (100)
T ss_dssp EEE-EESEE
T ss_pred cccCCCCCE
Confidence 765333333
No 138
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=49.93 E-value=98 Score=24.84 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=42.7
Q ss_pred CCCcCCCcCCCCccEEEEEEeCEEEEEEEecCC-----------------CC-eeEEEEeCCCcEEEECCCCeEEEEeC
Q 027842 103 PGGVNPPHFHPRATEILTVLKGTLEAGFVTSNP-----------------EN-RLFTKVLRPGDLFVAPKGMIHFQKNI 163 (218)
Q Consensus 103 Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~-----------------~~-~~~~~~L~~GDv~~~P~g~~H~~~N~ 163 (218)
+....-+-.|.+=.++-++++|+=.+++....+ +. ......|.+|+.++|=+|.+|.-.-.
T Consensus 57 ~~~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~ 135 (154)
T COG2731 57 EAEEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCN 135 (154)
T ss_pred chhhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccc
Confidence 333344566776799999999997777754431 01 12477899999999999999976433
No 139
>PLN02288 mannose-6-phosphate isomerase
Probab=49.53 E-value=13 Score=34.26 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.8
Q ss_pred EEEeCCCcEEEECCCCeEEEEe
Q 027842 141 TKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 141 ~~~L~~GDv~~~P~g~~H~~~N 162 (218)
...|+|||.+++|+|.+|.+..
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred eEecCCCCEEEecCCCCceecC
Confidence 6799999999999999998753
No 140
>COG1741 Pirin-related protein [General function prediction only]
Probab=48.67 E-value=1.9e+02 Score=25.43 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=28.5
Q ss_pred CCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEE
Q 027842 86 VPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEA 128 (218)
Q Consensus 86 ~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~ 128 (218)
.|--... +....+.+++|+..+.+ -..-.-++||++|++++
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v 206 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV 206 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE
Confidence 3443333 66778889999887766 22235688999998876
No 141
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=48.15 E-value=2.1e+02 Score=25.78 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=49.5
Q ss_pred CCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEEEEecC--CCCceeee
Q 027842 107 NPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVALASLGS--QNPGVVTV 184 (218)
Q Consensus 107 ~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s--~~pg~~~i 184 (218)
...-+..+++=+++-.+|++.+... - | ...+.++++.+||+|....+--.|...-.++.++.. +-|...-|
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~TE--f--G---rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~HF~LPDLGPI 219 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITTE--F--G---RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGAHFQLPDLGPI 219 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEee--c--c---ceeecccceEEeecccEEEEecCCCCcceEEEEecceeecCCCCcc
Confidence 3445555666666667788766542 2 3 467899999999999999887778877777777753 34444433
No 142
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=45.42 E-value=85 Score=24.48 Aligned_cols=65 Identities=15% Similarity=0.333 Sum_probs=43.6
Q ss_pred CCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEE----eCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEe
Q 027842 87 PGFNTLGISIARADFAPGGVNPPHFHPRATEILTVL----KGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 87 P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl----~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 162 (218)
|+++. +...++.+++|.....- ++.|+...+ .|++.+++.++. -..++|||++-+-.|..-.+++
T Consensus 12 P~~kN--~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~------~~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLKN--INVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEE------GCLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhhc--ceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCc------CcccCCccEEEecccchhhhcC
Confidence 66664 45566777777654322 345665543 477888887643 3489999999999998776654
No 143
>PF13994 PgaD: PgaD-like protein
Probab=42.38 E-value=32 Score=26.76 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.1
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHh
Q 027842 194 KISTDILAKAFQVDQFRIQQIQK 216 (218)
Q Consensus 194 ~~p~~vl~~af~~~~~~v~~l~~ 216 (218)
+.+++-+|+.|++++++++++++
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~ 122 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQ 122 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHh
Confidence 38999999999999999999976
No 144
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=42.37 E-value=31 Score=27.18 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 027842 193 PKISTDILAKAFQVDQFRIQQIQK 216 (218)
Q Consensus 193 p~~p~~vl~~af~~~~~~v~~l~~ 216 (218)
|..+++-+|++|+++++.+++|++
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~ 111 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQK 111 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhc
Confidence 568999999999999999999976
No 145
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=40.90 E-value=35 Score=27.42 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHh
Q 027842 193 PKISTDILAKAFQVDQFRIQQIQK 216 (218)
Q Consensus 193 p~~p~~vl~~af~~~~~~v~~l~~ 216 (218)
|.++++-+|+.|+++++.++++++
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~ 120 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKS 120 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHh
Confidence 468999999999999999999976
No 146
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=38.52 E-value=11 Score=37.80 Aligned_cols=57 Identities=26% Similarity=0.276 Sum_probs=37.0
Q ss_pred cCCCcCCCcCCCCccEEEEEEeCE---E--EEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCC
Q 027842 102 APGGVNPPHFHPRATEILTVLKGT---L--EAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGR 165 (218)
Q Consensus 102 ~Pgg~~ppH~H~~a~Ei~yVl~G~---~--~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 165 (218)
+-|..+++-.||-.++-+|+-++- + ++|+. + .+..=..||.++||+|.+|.++|.-.
T Consensus 763 E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe-----~--WtfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 763 EQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVE-----P--WTFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred HhcCCCCcccCCCcccceeccHHHHHHHHHHhCCC-----c--cchhhcccceEEecCCCcHHhhhhhh
Confidence 334445555577666667665542 1 12221 1 35666789999999999999999643
No 147
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=37.73 E-value=1.3e+02 Score=20.51 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=32.5
Q ss_pred EeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEeCCCccEEEE
Q 027842 122 LKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKNIGRGKAVAL 171 (218)
Q Consensus 122 l~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 171 (218)
..|+..+.+.+.+| ..+++..+++||..-+..+..-. ...|+-.++-+
T Consensus 5 a~~~sWv~V~d~dG-~~~~~~~l~~G~~~~~~~~~~~~-i~iGna~~v~v 52 (77)
T PF13464_consen 5 ATGDSWVEVTDADG-KVLFSGTLKAGETKTFEGKEPFR-IRIGNAGAVEV 52 (77)
T ss_pred EeCCeEEEEEeCCC-cEeeeeeeCCCcEEEEeCCCCEE-EEEeCCCcEEE
Confidence 45777777775553 57789999999999995554443 34565555544
No 148
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=37.66 E-value=24 Score=23.63 Aligned_cols=24 Identities=8% Similarity=0.266 Sum_probs=17.7
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhcC
Q 027842 195 ISTDILAKAFQVDQFRIQQIQKNF 218 (218)
Q Consensus 195 ~p~~vl~~af~~~~~~v~~l~~~~ 218 (218)
-.+.-|.+.+|++++++++||+++
T Consensus 44 s~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 44 SVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHc
Confidence 367789999999999999999763
No 149
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=34.43 E-value=90 Score=31.39 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=33.0
Q ss_pred EEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEE
Q 027842 97 ARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLF 150 (218)
Q Consensus 97 ~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 150 (218)
....++||..+-..-.. ++++++|++|++.+... .++ ++.....+++||.+
T Consensus 398 ~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~-~~~-~e~~l~~l~~Gd~F 448 (823)
T PLN03192 398 KAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDS-EGE-KERVVGTLGCGDIF 448 (823)
T ss_pred heeeeCCCCEEEECCCC-CceEEEEEecEEEEEEe-cCC-cceeeEEccCCCEe
Confidence 34467787754333233 57899999999988542 221 33345679999987
No 150
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=34.05 E-value=1.2e+02 Score=25.77 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.5
Q ss_pred EEEEeCCCcEEEECCCCeEEEEeCC
Q 027842 140 FTKVLRPGDLFVAPKGMIHFQKNIG 164 (218)
Q Consensus 140 ~~~~L~~GDv~~~P~g~~H~~~N~g 164 (218)
....+++|++++||...+|...-..
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pVt 165 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPVT 165 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeecc
Confidence 4778999999999999999987643
No 151
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=33.65 E-value=52 Score=20.24 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=18.2
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhcC
Q 027842 194 KISTDILAKAFQVDQFRIQQIQKNF 218 (218)
Q Consensus 194 ~~p~~vl~~af~~~~~~v~~l~~~~ 218 (218)
+.+..-+++.++++..+|.++.++|
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~ 41 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRY 41 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT--
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 4788899999999999999988764
No 152
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=33.31 E-value=43 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=19.0
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhc
Q 027842 194 KISTDILAKAFQVDQFRIQQIQKN 217 (218)
Q Consensus 194 ~~p~~vl~~af~~~~~~v~~l~~~ 217 (218)
|+++..+++.+++++++|++++++
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~ 95 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKE 95 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHH
T ss_pred CCCHHHHHhccCCCHHHHHHHHHH
Confidence 599999999999999999999764
No 153
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=32.38 E-value=51 Score=29.83 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=50.6
Q ss_pred ccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCC---------------------------
Q 027842 84 TQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPE--------------------------- 136 (218)
Q Consensus 84 ~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~--------------------------- 136 (218)
..+|+.++.++.+....-+.|...|.|.-+. ..++.-+-|+.++.+......
T Consensus 240 c~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp 318 (355)
T KOG2132|consen 240 CSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFP 318 (355)
T ss_pred eecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhh
Confidence 3445555434444444444488888887665 677778888887777643210
Q ss_pred ----CeeEEEEeCCCcEEEECCCCeEEEEeC
Q 027842 137 ----NRLFTKVLRPGDLFVAPKGMIHFQKNI 163 (218)
Q Consensus 137 ----~~~~~~~L~~GDv~~~P~g~~H~~~N~ 163 (218)
-+.....|++||++++|+-..|+.+..
T Consensus 319 ~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 319 KFAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred HHHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 011124688899999999999987653
No 154
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=31.18 E-value=89 Score=24.38 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=20.6
Q ss_pred eEEEEeCCCcEEEECCCCeEEE-EeCCCc
Q 027842 139 LFTKVLRPGDLFVAPKGMIHFQ-KNIGRG 166 (218)
Q Consensus 139 ~~~~~L~~GDv~~~P~g~~H~~-~N~g~~ 166 (218)
.....+++||++++...++|.- .|.++.
T Consensus 179 ~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 179 WVPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp CEEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred eEEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 3577899999999999999976 455443
No 155
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=30.71 E-value=42 Score=30.64 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=17.9
Q ss_pred EEEeCCCcEEEECCCCeEEEEe
Q 027842 141 TKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 141 ~~~L~~GDv~~~P~g~~H~~~N 162 (218)
...|++|+.+++|+|.+|.+..
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 5689999999999999998864
No 156
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=29.83 E-value=1.2e+02 Score=19.95 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=19.3
Q ss_pred EEEEEecCCCCeeEEEEeCCCcEEEECCCCeE
Q 027842 127 EAGFVTSNPENRLFTKVLRPGDLFVAPKGMIH 158 (218)
Q Consensus 127 ~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H 158 (218)
++++-+.. ++..+..|++|..+.--+|.++
T Consensus 11 rVQlTD~K--gr~~Ti~L~~G~~fhThrG~i~ 40 (54)
T PF14801_consen 11 RVQLTDPK--GRKHTITLEPGGEFHTHRGAIR 40 (54)
T ss_dssp EEEEEETT----EEEEE--TT-EEEETTEEEE
T ss_pred EEEEccCC--CCeeeEEECCCCeEEcCccccc
Confidence 35666665 7778999999999998888665
No 157
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.55 E-value=97 Score=31.08 Aligned_cols=47 Identities=28% Similarity=0.517 Sum_probs=33.1
Q ss_pred EcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEE
Q 027842 101 FAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLF 150 (218)
Q Consensus 101 l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 150 (218)
+.||...-.+-.+ .+|+++|++|++++.-. ++++......|++||.+
T Consensus 447 f~pge~iireGd~-v~~myFI~rG~le~~~~--~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 447 FTPGEYIIREGDP-VTDMYFIVRGSLESITT--DGGGFFVVAILGPGDFF 493 (727)
T ss_pred cCCCCeEEecCCc-cceeEEEEeeeEEEEEc--cCCceEEEEEecCCCcc
Confidence 5566555555555 58999999999976543 22244568899999998
No 158
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=28.16 E-value=77 Score=22.62 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=8.5
Q ss_pred hccCCCCCcc--eEee
Q 027842 22 FAFDPSPLQD--FCVA 35 (218)
Q Consensus 22 ~~~d~~~~~d--~cv~ 35 (218)
.+..|..-.| ||+-
T Consensus 20 ~~~~pA~A~dyp~Clq 35 (82)
T PF12071_consen 20 LAAAPAQARDYPYCLQ 35 (82)
T ss_pred ccccchhhcCCcEEEe
Confidence 3445555566 8987
No 159
>PF15240 Pro-rich: Proline-rich
Probab=27.00 E-value=46 Score=27.40 Aligned_cols=7 Identities=29% Similarity=0.164 Sum_probs=3.0
Q ss_pred hhccCCC
Q 027842 21 AFAFDPS 27 (218)
Q Consensus 21 ~~~~d~~ 27 (218)
|-..|-|
T Consensus 16 AQ~~dEd 22 (179)
T PF15240_consen 16 AQSTDED 22 (179)
T ss_pred ccccccc
Confidence 3444444
No 160
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=26.39 E-value=81 Score=27.27 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=27.3
Q ss_pred EEEeCCCcEEEECCCCeEEE-EeCCCc-cEEEEEEecCC
Q 027842 141 TKVLRPGDLFVAPKGMIHFQ-KNIGRG-KAVALASLGSQ 177 (218)
Q Consensus 141 ~~~L~~GDv~~~P~g~~H~~-~N~g~~-~a~~l~~~~s~ 177 (218)
...+++||+++|..-++|.- .|.++. ...++..|++.
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~ 250 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSV 250 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecC
Confidence 56789999999999999976 566554 35555566643
No 161
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=24.77 E-value=1.1e+02 Score=30.29 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=33.6
Q ss_pred eEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEE
Q 027842 94 ISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLF 150 (218)
Q Consensus 94 ~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 150 (218)
|.+....-+||.. -.|+-...+-+++|++|++++.-. ++ ....|.+||+|
T Consensus 569 m~f~~~H~APGDL-lYHtGESvDaLcFvVsGSLEVIQD-----DE-VVAILGKGDVF 618 (971)
T KOG0501|consen 569 MEFQTNHCAPGDL-LYHTGESVDALCFVVSGSLEVIQD-----DE-VVAILGKGDVF 618 (971)
T ss_pred HHHHhccCCCcce-eeecCCccceEEEEEecceEEeec-----Cc-EEEEeecCccc
Confidence 3334444566643 245555567799999999987432 23 57899999998
No 162
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=24.52 E-value=1.3e+02 Score=24.60 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=32.1
Q ss_pred EEEEEeCEEEEEEEecCCCCeeEEEEeCCCcEEEECCCCeEEEEe
Q 027842 118 ILTVLKGTLEAGFVTSNPENRLFTKVLRPGDLFVAPKGMIHFQKN 162 (218)
Q Consensus 118 i~yVl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 162 (218)
+..-++|+..+.+... |.+++..|.+||-+++.++.+=.+..
T Consensus 132 ~~~~l~G~G~v~l~~~---G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 132 FMLKLSGRGTVFLSGY---GAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEESSCEEEEEEC---CSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred EEEEEEEEEEEEEEeC---CcEEEEEccCCceEEEcCCCEEEECC
Confidence 4456889988877654 67889999999999999887766644
No 163
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=22.21 E-value=2.3e+02 Score=25.78 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=55.7
Q ss_pred CCCceEEEEeeccCCCCcccCeEEEEEEEcCCCcCCCcCCCCccEEEEEEeCEEEEEEEecCCCCe-eEEEEeCCCcEEE
Q 027842 73 PFGSIATRITVTQVPGFNTLGISIARADFAPGGVNPPHFHPRATEILTVLKGTLEAGFVTSNPENR-LFTKVLRPGDLFV 151 (218)
Q Consensus 73 ~~g~~v~~~~~~~~P~l~~~g~s~~~~~l~Pgg~~ppH~H~~a~Ei~yVl~G~~~~~~~~~~~~~~-~~~~~L~~GDv~~ 151 (218)
..|..|..++... ++.-..+.|+.++...+.--+..-++..+-.+++..-++.++.++ |+ +-...|++||-+.
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~d--G~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPD--GKPVSVVDLKPGDEVL 323 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCC--CCEeeeeecCCCCEEE
Confidence 4566666664322 122356778888776665555544678899999999999998876 44 4567899999874
Q ss_pred --ECCCCeEEEE
Q 027842 152 --APKGMIHFQK 161 (218)
Q Consensus 152 --~P~g~~H~~~ 161 (218)
.+.+--|+-.
T Consensus 324 ~~~~~~~RHfG~ 335 (344)
T PRK02290 324 GYLEEAARHFGM 335 (344)
T ss_pred EEecCCcccccc
Confidence 4555556543
No 164
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=22.17 E-value=2.8e+02 Score=20.05 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=29.4
Q ss_pred CeeEEEEeCCCcEEEECCCCeEEEEe----C--CCccEEEEEEecCCCCcee-eeccccccCCCCCC
Q 027842 137 NRLFTKVLRPGDLFVAPKGMIHFQKN----I--GRGKAVALASLGSQNPGVV-TVPNTVFGSHPKIS 196 (218)
Q Consensus 137 ~~~~~~~L~~GDv~~~P~g~~H~~~N----~--g~~~a~~l~~~~s~~pg~~-~i~~~~f~~~p~~p 196 (218)
++....+++.|+.+.|-. +.-.... . ++.....+.-+.-.+.+.. ....|+|++.|++.
T Consensus 11 g~~~~~~v~~G~~~~~g~-L~i~~~~C~~r~p~~~p~~~Af~~v~~~~~~~~~iF~GWMfassPal~ 76 (90)
T PF09923_consen 11 GRVTDFEVPVGETVQFGN-LTITLRACVSRPPTENPDTDAFVQVTIREQGKREIFSGWMFASSPALN 76 (90)
T ss_pred CeEEEEEEcCCCEEEEcc-EEEEhhheecCCCCCCcCccceEEEEEcCCCccccEeeeEEecCcccc
Confidence 556677788888777732 1111111 1 1112222222233333333 66789999877654
No 165
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=21.62 E-value=74 Score=23.89 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=14.6
Q ss_pred HHHHHcCCCHHHHHHHHhcC
Q 027842 199 ILAKAFQVDQFRIQQIQKNF 218 (218)
Q Consensus 199 vl~~af~~~~~~v~~l~~~~ 218 (218)
-|+++||.+.+.+-.||++|
T Consensus 57 rL~k~fGtspefWlNlQ~~y 76 (104)
T COG3093 57 RLAKVFGTSPEFWLNLQNAY 76 (104)
T ss_pred HHHHHhCCCHHHHHHHHHHH
Confidence 37788888888877777653
No 166
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=20.18 E-value=2.2e+02 Score=23.93 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=24.3
Q ss_pred EEEEeCCCcEEEECCCCeEEEEeC--CCccEEEEEE
Q 027842 140 FTKVLRPGDLFVAPKGMIHFQKNI--GRGKAVALAS 173 (218)
Q Consensus 140 ~~~~L~~GDv~~~P~g~~H~~~N~--g~~~a~~l~~ 173 (218)
....|-+||.+.+|....|..--. |..-+.++++
T Consensus 144 h~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~ 179 (229)
T COG3128 144 HRVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWI 179 (229)
T ss_pred eEEeccCCCEEEcccccceeccccccCceEEEeeeh
Confidence 377899999999999999987433 3333444443
Done!