BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027843
MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQV
IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVK
AGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQL
QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK

High Scoring Gene Products

Symbol, full name Information P value
PSAL
AT4G12800
protein from Arabidopsis thaliana 6.0e-80
psaL
Photosystem I reaction center subunit XI
protein from Synechocystis sp. PCC 6803 substr. Kazusa 1.4e-25

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027843
        (218 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2135808 - symbol:PSAL "AT4G12800" species:3702...   803  6.0e-80   1
UNIPROTKB|P37277 - symbol:psaL "Photosystem I reaction ce...   290  1.4e-25   1


>TAIR|locus:2135808 [details] [associations]
            symbol:PSAL "AT4G12800" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009522 "photosystem I"
            evidence=IEA] [GO:0009538 "photosystem I reaction center"
            evidence=IEA;ISS] [GO:0015979 "photosynthesis" evidence=IEA;RCA]
            [GO:0019684 "photosynthesis, light reaction" evidence=ISS;RCA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010287
            "plastoglobule" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0006364 "rRNA processing"
            evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
            [GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0030003
            "cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
            metal ion transport" evidence=RCA] InterPro:IPR003757 Pfam:PF02605
            ProDom:PD005947 GO:GO:0016021 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
            GO:GO:0015979 EMBL:AL049640 EMBL:AL161534 GO:GO:0009538
            TCDB:5.B.4.1.1 EMBL:AJ245867 EMBL:AF428447 EMBL:AF446350
            EMBL:AY059949 EMBL:AY097427 EMBL:AY087339 EMBL:AB015861
            IPI:IPI00532729 PIR:T06638 RefSeq:NP_193016.1 UniGene:At.24184
            PDB:1YO9 PDBsum:1YO9 ProteinModelPortal:Q9SUI4 SMR:Q9SUI4
            IntAct:Q9SUI4 STRING:Q9SUI4 PaxDb:Q9SUI4 PRIDE:Q9SUI4
            EnsemblPlants:AT4G12800.1 GeneID:826892 KEGG:ath:AT4G12800
            TAIR:At4g12800 eggNOG:NOG322620 HOGENOM:HOG000233808
            InParanoid:Q9SUI4 KO:K02699 OMA:PNFRGLE PhylomeDB:Q9SUI4
            ProtClustDB:PLN00038 BioCyc:MetaCyc:MONOMER-1094
            Genevestigator:Q9SUI4 GermOnline:AT4G12800 Gene3D:1.20.1240.10
            SUPFAM:SSF81568 Uniprot:Q9SUI4
        Length = 219

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 156/219 (71%), Positives = 177/219 (80%)

Query:     1 MASVSSPMASQLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQ 59
             MA+ +SPMASQL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+Q
Sbjct:     1 MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query:    60 VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
             V+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFV
Sbjct:    61 VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query:   120 KAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
             KAGPLRNT              VVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQ
Sbjct:   121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query:   180 LQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 218
             LQTADGWAK         ISGV WAYFLLYVL+LPYFVK
Sbjct:   181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219


>UNIPROTKB|P37277 [details] [associations]
            symbol:psaL "Photosystem I reaction center subunit XI"
            species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
            [GO:0030094 "plasma membrane-derived photosystem I" evidence=IDA]
            HAMAP:MF_00447 InterPro:IPR003757 Pfam:PF02605 ProDom:PD005947
            GO:GO:0016021 EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0015979
            GO:GO:0042651 GO:GO:0030094 GO:GO:0009538 eggNOG:NOG322620
            HOGENOM:HOG000233808 KO:K02699 OMA:PNFRGLE Gene3D:1.20.1240.10
            SUPFAM:SSF81568 EMBL:L11649 EMBL:L24773 PIR:A46735
            RefSeq:NP_442961.1 RefSeq:YP_005653020.1 ProteinModelPortal:P37277
            SMR:P37277 IntAct:P37277 STRING:P37277 GeneID:12255471
            GeneID:951948 KEGG:syn:slr1655 KEGG:syy:SYNGTS_3067 PATRIC:23843748
            ProtClustDB:PRK00704 BioCyc:MetaCyc:PSAL-MONOMER InterPro:IPR022980
            Uniprot:P37277
        Length = 157

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 60/155 (38%), Positives = 88/155 (56%)

Query:    59 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
             QV+Q  NGDPF+G L TPI+ S     ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+
Sbjct:     6 QVVQAYNGDPFVGHLSTPISDSAFTRTFIGNLPAYRKGLSPILRGLEVGMAHGYFLIGPW 65

Query:   119 VKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
                GPLR++E             +++ +  L+ YG+ +F +GE  +             D
Sbjct:    66 TLLGPLRDSEYQYIGGLIGALALILVATAALSSYGLVTF-QGEQGSG------------D 112

Query:   179 QLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 213
              LQTADGW++         + G   AYFLL  L++
Sbjct:   113 TLQTADGWSQFAAGFFVGGMGGAFVAYFLLENLSV 147


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      218       197   0.00082  111 3  11 22  0.48    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  148 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.04u 0.09s 18.13t   Elapsed:  00:00:01
  Total cpu time:  18.05u 0.09s 18.14t   Elapsed:  00:00:01
  Start:  Sat May 11 11:59:35 2013   End:  Sat May 11 11:59:36 2013

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