BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027843
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|L Chain L, Improved Model Of Plant Photosystem I
pdb|2WSE|L Chain L, Improved Model Of Plant Photosystem I
pdb|2WSF|L Chain L, Improved Model Of Plant Photosystem I
Length = 216
Score = 301 bits (772), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/219 (69%), Positives = 174/219 (79%), Gaps = 4/219 (1%)
Query: 1 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFLVKAIQSEKPTYQ 59
MA+ +SPMASQLKS FT+ ++L+ P+GISG R PS +R F V+AI++EKPTYQ
Sbjct: 1 MAATTSPMASQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 57
Query: 60 VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFV 119
VIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFV
Sbjct: 58 VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 117
Query: 120 KAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQ 179
KAGPLRNTE VVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQ
Sbjct: 118 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 177
Query: 180 LQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 218
LQ+ADGWAK +SGV WA FL+YVL+LPY+ K
Sbjct: 178 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216
>pdb|3LW5|L Chain L, Improved Model Of Plant Photosystem I
Length = 161
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/161 (81%), Positives = 138/161 (85%)
Query: 55 KPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLL 114
KPTYQVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHG+LL
Sbjct: 1 KPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLL 60
Query: 115 VGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRK 174
VGPFVKAGPLRNTEI VVILS+CLTIYGI+SF+EG PSTAP LTLTGRK
Sbjct: 61 VGPFVKAGPLRNTEIAGQAGSLAAGGLVVILSLCLTIYGISSFNEGAPSTAPSLTLTGRK 120
Query: 175 KEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPY 215
KEPDQLQTADGWAK ISGVIWAYFLLYVL+LPY
Sbjct: 121 KEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPY 161
>pdb|2O01|L Chain L, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 164
Score = 254 bits (648), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 124/164 (75%), Positives = 135/164 (82%)
Query: 55 KPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLL 114
KPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLL
Sbjct: 1 KPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLL 60
Query: 115 VGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRK 174
VGPFVKAGPLRNTE VVILS+CLT+YGIASF EGEPS AP LTLTGRK
Sbjct: 61 VGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRK 120
Query: 175 KEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 218
K+PDQLQ+ADGWAK +SGV WA FL+YVL+LPY+ K
Sbjct: 121 KQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 164
>pdb|1JB0|L Chain L, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
pdb|3PCQ|L Chain L, Femtosecond X-Ray Protein Nanocrystallography
pdb|4FE1|L Chain L, Improving The Accuracy Of Macromolecular Structure
Refinement At 7 A Resolution
Length = 154
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 13/150 (8%)
Query: 59 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPF 118
++++P NGDPF+G L TPI+ S L+ ++ NLPAYR +SP+LRG+EVG+AHG+ L+GP+
Sbjct: 3 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPW 62
Query: 119 VKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPD 178
VK GPLR++++ +++ + CL YG+ SF +G S+ P
Sbjct: 63 VKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDP------------ 110
Query: 179 QLQTADGWAKXXXXXXXXXISGVIWAYFLL 208
L+T++GW++ + A+FLL
Sbjct: 111 -LKTSEGWSQFTAGFFVGAMGSAFVAFFLL 139
>pdb|3TLG|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 73 LETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLV 115
L P+ I ++ S+ PA TA + RGVE GF LV
Sbjct: 36 LAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLV 78
>pdb|3TLZ|A Chain A, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
pdb|3TLZ|B Chain B, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
Length = 371
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 73 LETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLV 115
L P+ I ++ S+ PA TA + RGVE GF LV
Sbjct: 36 LAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLV 78
>pdb|3TLG|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 73 LETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLV 115
L P+ I ++ S+ PA TA + RGVE GF LV
Sbjct: 36 LAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLV 78
>pdb|3TLY|A Chain A, Microcin C7 Self Immunity Protein Mccf Active Site Mutant
S118aN220AK247A IN THE APO STATE
pdb|3TLY|B Chain B, Microcin C7 Self Immunity Protein Mccf Active Site Mutant
S118aN220AK247A IN THE APO STATE
Length = 371
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 54 EKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFL 113
+ +++ I P L P+ I ++ S+ PA TA + RGVE GF
Sbjct: 20 DDDDKHMLEMIQSHPL---LAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFK 76
Query: 114 LV 115
LV
Sbjct: 77 LV 78
>pdb|3TLC|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
pdb|3TLC|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
Length = 371
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 73 LETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLV 115
L P+ I ++ S+ PA TA + RGVE GF LV
Sbjct: 36 LAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLV 78
>pdb|3TLB|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
pdb|3TLB|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
Length = 371
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 73 LETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLV 115
L P+ I ++ S+ PA TA + RGVE GF LV
Sbjct: 36 LAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLV 78
>pdb|3TLA|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLA|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLE|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
pdb|3TLE|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
Length = 371
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 73 LETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLV 115
L P+ I ++ S+ PA TA + RGVE GF LV
Sbjct: 36 LAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLV 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,737,874
Number of Sequences: 62578
Number of extensions: 210544
Number of successful extensions: 378
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 11
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)