Query 027843
Match_columns 218
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 16:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00038 photosystem I reactio 100.0 2.1E-88 4.5E-93 565.5 11.5 165 51-215 1-165 (165)
2 PRK00704 photosystem I reactio 100.0 3E-81 6.5E-86 521.0 9.7 148 60-212 1-148 (160)
3 CHL00120 psaL photosystem I su 100.0 4.8E-81 1E-85 512.2 10.3 141 58-211 2-142 (143)
4 PF02605 PsaL: Photosystem I r 100.0 3.9E-82 8.5E-87 523.5 -8.3 151 58-213 1-151 (153)
5 PF12732 YtxH: YtxH-like prote 65.0 2 4.4E-05 31.0 -0.1 20 189-208 1-20 (74)
6 PF10577 UPF0560: Uncharacteri 52.9 14 0.0003 38.8 3.4 43 111-153 246-296 (807)
7 PF12957 DUF3846: Domain of un 43.2 21 0.00045 26.9 2.3 38 87-129 50-87 (95)
8 cd04735 OYE_like_4_FMN Old yel 36.2 8.1 0.00017 35.2 -1.1 25 99-126 156-180 (353)
9 cd02929 TMADH_HD_FMN Trimethyl 31.7 12 0.00025 34.6 -0.8 18 97-114 160-177 (370)
10 PRK13523 NADPH dehydrogenase N 30.5 11 0.00025 34.5 -1.1 33 97-130 152-185 (337)
11 cd04734 OYE_like_3_FMN Old yel 29.6 12 0.00026 34.1 -1.1 16 99-114 153-168 (343)
12 PRK10605 N-ethylmaleimide redu 27.4 15 0.00033 33.9 -0.8 19 99-118 171-189 (362)
13 COG4883 Uncharacterized protei 26.9 20 0.00043 35.0 -0.2 74 59-139 77-154 (500)
14 cd04733 OYE_like_2_FMN Old yel 26.9 14 0.00031 33.2 -1.1 15 101-115 163-177 (338)
15 COG5473 Predicted integral mem 25.2 20 0.00042 33.7 -0.5 120 80-216 73-214 (290)
16 cd04747 OYE_like_5_FMN Old yel 24.4 17 0.00037 33.9 -1.1 22 97-119 154-175 (361)
17 PF00724 Oxidored_FMN: NADH:fl 24.4 15 0.00034 33.2 -1.3 15 101-115 163-177 (341)
18 PF09959 DUF2193: Uncharacteri 24.3 28 0.0006 34.6 0.3 68 59-139 76-153 (499)
19 PF06682 DUF1183: Protein of u 23.5 1.7E+02 0.0036 27.7 5.1 25 182-209 246-270 (318)
20 cd02933 OYE_like_FMN Old yello 23.1 20 0.00044 32.8 -0.9 30 100-130 165-195 (338)
21 cd02930 DCR_FMN 2,4-dienoyl-Co 22.8 19 0.00041 32.7 -1.1 31 99-130 149-180 (353)
22 PF11240 DUF3042: Protein of u 22.7 31 0.00067 25.1 0.2 13 187-199 2-14 (54)
23 PLN02411 12-oxophytodienoate r 21.9 22 0.00047 33.3 -0.9 16 99-114 177-192 (391)
24 PHA03049 IMV membrane protein; 20.4 1.2E+02 0.0027 23.1 3.0 17 145-161 13-29 (68)
No 1
>PLN00038 photosystem I reaction center subunit XI (PsaL); Provisional
Probab=100.00 E-value=2.1e-88 Score=565.45 Aligned_cols=165 Identities=87% Similarity=1.440 Sum_probs=162.9
Q ss_pred hhcCCCcccccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccchhhhhhhcccceeecceeeeccCCCCCcc
Q 027843 51 IQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIA 130 (218)
Q Consensus 51 ~~~~~~~~~~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A 130 (218)
||+|++++|+|||||+|||||||+||||||+++||||+|||+||+||||++|||||||||||||+|||+|+|||||||+|
T Consensus 1 ~~~~~~~~~~i~p~~~DP~vG~L~TPvnsS~~t~~fi~NLPaYR~GlSp~~RGLEiGmAHGYfL~GPF~klGPLRnte~a 80 (165)
T PLN00038 1 VQAAKPKAQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKLGPLRNTDVA 80 (165)
T ss_pred CCCCCccceeeecCCCCCccccccCccCCcHHHHHHHhcCccccccCCHhhhhhhhhhhceeeeechHHhhCCCcCchHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCccccCCCCCCCCCCChhhhhccccceecccchHHHHHHHHHhh
Q 027843 131 GPAGSLAAGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYV 210 (218)
Q Consensus 131 ~laGlLsaigLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~ 210 (218)
++||+|+|||||+|||+||+|||.++||+++|+++++.|+|+|++.+|+|||+|||+||++||||||||||+||||||++
T Consensus 81 ~laGlLsaiglv~IlT~~Ls~Yg~~~f~~~~p~~~~~~t~~~~~~~~d~L~T~~GWs~Ft~GF~vGg~GGa~fAy~Ll~~ 160 (165)
T PLN00038 81 GLAGSLSAAGLVLILTLCLTIYGAASFQEGEPSIAPSLTLTGRKKEPDPLQTADGWAKFTGGFFFGGISGVAWAYFLLYV 160 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCccccccccccccCCCcccccCcccHHHhccceeeecccHHHHHHHHHhc
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 027843 211 LNLPY 215 (218)
Q Consensus 211 ~~lp~ 215 (218)
+||||
T Consensus 161 l~~p~ 165 (165)
T PLN00038 161 LNLPY 165 (165)
T ss_pred ccCCC
Confidence 99998
No 2
>PRK00704 photosystem I reaction center protein subunit XI; Provisional
Probab=100.00 E-value=3e-81 Score=520.97 Aligned_cols=148 Identities=47% Similarity=0.850 Sum_probs=139.5
Q ss_pred ccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccchhhhhhhcccceeecceeeeccCCCCCcchhhhHHHHH
Q 027843 60 VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAG 139 (218)
Q Consensus 60 ~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLsai 139 (218)
+||||++|||||||+||||||++|||||+||||||+||||++|||||||||||||+|||+|+|||||||+|++||+|+||
T Consensus 1 ~i~p~~~DP~vG~L~TPvnsS~~t~~fi~NLPaYR~GLSp~~RGLEiGmAHGYfL~GPF~~lGPLRnte~a~laGllsai 80 (160)
T PRK00704 1 WVVPPVGDPCVGNLATPVNSSYFTKAFINNLPIYRPGLSPNFRGLETGMAHGYLLYGPFAKLGPLRDTEFANLAGLLAAI 80 (160)
T ss_pred CccCCCCCCccccccCCcCCcHHHHHHHhcCccccccCCHHhhhhHhhhhceeeeechHHHhCCCcCchHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCccccCCCCCCCCCCChhhhhccccceecccchHHHHHHHHHhhCC
Q 027843 140 GLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLN 212 (218)
Q Consensus 140 gLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~~ 212 (218)
|||+|||+||++||.++||++++... .| ++++||+|||+|||+||++||||||||||+|||+||+|++
T Consensus 81 glv~IlT~~LslYg~~~~~~~~~~~~----~t-~~~~p~~l~T~~gWs~Ft~GF~vGg~GGa~fAy~Ll~~~~ 148 (160)
T PRK00704 81 GLVLILTALLSLYGAVGKQPNVAPPD----VT-VPNPPADLFTREGWSDFTSGFWLGGCGGAVFAYFLLETLD 148 (160)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCcc----cc-ccCChhhccCcccHHHhhcceeeccccHHHHHHHHHhhhH
Confidence 99999999999999999999654221 22 4789999999999999999999999999999999999854
No 3
>CHL00120 psaL photosystem I subunit XI; Validated
Probab=100.00 E-value=4.8e-81 Score=512.23 Aligned_cols=141 Identities=53% Similarity=0.991 Sum_probs=135.7
Q ss_pred ccccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccchhhhhhhcccceeecceeeeccCCCCCcchhhhHHH
Q 027843 58 YQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLA 137 (218)
Q Consensus 58 ~~~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLs 137 (218)
.|+|||||+|||||||+||||||++|||||+|||+||+||||++|||||||||||||+|||+|+|||||||+|++||+|+
T Consensus 2 ~~~i~p~~~DP~vG~L~TPvnsS~~t~~fi~NLPaYR~GlSp~~RGLEiGmAHGYfL~GPf~~lGPLRnt~~a~laGlls 81 (143)
T CHL00120 2 ANFIKPYNDDPFVGHLSTPITTSSFTRALLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFYKLGPLRNSDVALLAGFLS 81 (143)
T ss_pred CcccccCCCCCccccccCCcCCcHHHHHHHhcCccccccCCHHhhhhHhhhhceeeeechHHhhCCCcCchHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCccccCCCCCCCCCCChhhhhccccceecccchHHHHHHHHHhhC
Q 027843 138 AGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVL 211 (218)
Q Consensus 138 aigLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~ 211 (218)
|||||+|||+||++||.++||+++ +.||+|||+|||+||++||||||||||+|||+||+|+
T Consensus 82 aiglv~Ilt~~L~~Yg~~~~~~~~-------------~~~~~l~t~~gW~~Ft~GF~~Gg~GGa~fAy~Ll~ni 142 (143)
T CHL00120 82 AIGLIIILTLCLTIYGVVSFQEED-------------SSGDDLQTKKGWRQFTSGFLVGAVGGAGFAYLLLSNI 142 (143)
T ss_pred HHHHHHHHHHHHHHhcccccCCCC-------------CCcccccCcccHHHhccceeeecccHHHHHHHHHHcC
Confidence 999999999999999999999842 2468999999999999999999999999999999973
No 4
>PF02605 PsaL: Photosystem I reaction centre subunit XI; InterPro: IPR003757 The trimeric photosystem I of the cyanobacterium Synechococcus elongatus recomprises 11 protein subunits. Subunit XI, PsaL, from plants and bacteria is one of the smaller subunits with only two transmembrane alpha helices. PsaL interacts closely with PsaI [].; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSC_L 2WSF_L 2WSE_L 2O01_L 1JB0_L 3PCQ_L.
Probab=100.00 E-value=3.9e-82 Score=523.47 Aligned_cols=151 Identities=61% Similarity=1.071 Sum_probs=137.3
Q ss_pred ccccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccchhhhhhhcccceeecceeeeccCCCCCcchhhhHHH
Q 027843 58 YQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLA 137 (218)
Q Consensus 58 ~~~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLs 137 (218)
+|+||||| |||||||+||||||++|||||+||||||+||||++|||||||||||||+|||+|||||||||+|++||+|+
T Consensus 1 ~~~v~p~~-DP~vG~L~TPinsS~~t~~fl~NLPaYR~GLSp~~RGLEiGmAHGYfL~GPF~~lGPLRnt~~a~laGlls 79 (153)
T PF02605_consen 1 QQVVKPYN-DPFVGNLATPINSSPFTKAFLNNLPAYRKGLSPLLRGLEIGMAHGYFLVGPFVKLGPLRNTEVANLAGLLS 79 (153)
T ss_dssp -SSSCCCC-STTCBSEESCCCC-CCCCCCCCTSTTTSTTS-HHHHHHHHHHHCCCCCTHHHHHCSTTTTSTTCCHCCCCC
T ss_pred CCccccCC-CCccccccCcccccHHHHHHHhcCccccccCChhhhhhhhhhhceeeEechhhhcccCcCcchHHHHHHHH
Confidence 37999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCccccCCCCCCCCCCChhhhhccccceecccchHHHHHHHHHhhCCC
Q 027843 138 AGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNL 213 (218)
Q Consensus 138 aigLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~~l 213 (218)
|+|||+|+|+||+|||+++||+++. +..++|.+ ++||+|||+|||+||++||||||||||+|||+||+|+++
T Consensus 80 aiglv~IlT~~LsiYg~~~f~~~~~---~~~~~t~~-~~p~~l~T~~gWs~F~~GF~iGg~GGa~fAy~Ll~n~~~ 151 (153)
T PF02605_consen 80 AIGLVLILTICLSIYGSVSFQEPPK---PTATLTVP-NPPDDLQTSEGWSQFTSGFFIGGCGGAFFAYFLLENLPL 151 (153)
T ss_dssp CCCHHHHHCCCCCCCCCCCTSS------SSSS-SST-T-SSGGGSHHHHHHHHHHHHHHHCCCCHHHHHCHHTHHC
T ss_pred HHHHHHHHHHHHHHhcccccCCCCC---CcccccCC-CChhhccChhhHHHhcccceeccccHHHHHHHHHhcccc
Confidence 9999999999999999999999542 34477774 778999999999999999999999999999999998753
No 5
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=65.04 E-value=2 Score=31.00 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=17.6
Q ss_pred cccceecccchHHHHHHHHH
Q 027843 189 FTGGFFFGGISGVIWAYFLL 208 (218)
Q Consensus 189 Ft~GF~iGG~GGA~fAy~Ll 208 (218)
|..||++|+.-||+.++|+-
T Consensus 1 F~~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 67799999999999998874
No 6
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=52.92 E-value=14 Score=38.78 Aligned_cols=43 Identities=21% Similarity=0.456 Sum_probs=35.2
Q ss_pred cceeecc-eeeeccCCCC--Ccch-----hhhHHHHHHHHHHHHHHHHHhh
Q 027843 111 GFLLVGP-FVKAGPLRNT--EIAG-----PAGSLAAGGLVVILSICLTIYG 153 (218)
Q Consensus 111 GYfLvGP-F~klGPLRnt--e~A~-----laGlLsaigLV~IlTi~LsiYG 153 (218)
|||+-.| =..-||..++ |++. |-+.|+++.+|+|.-+|+.+|-
T Consensus 246 GYWiAA~~P~~~G~~~~~~~Di~~YHT~fLl~ILG~~~livl~lL~vLl~y 296 (807)
T PF10577_consen 246 GYWIAAMSPSSSGPVVSTGSDITTYHTVFLLAILGGTALIVLILLCVLLCY 296 (807)
T ss_pred chhhhccCccccCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988 5777888887 6654 5788888889999999998884
No 7
>PF12957 DUF3846: Domain of unknown function (DUF3846); InterPro: IPR024559 A family of uncharacterised proteins found by clustering human gut metagenomic sequences []. In a few cases it is found fused to the C terminus of ArdA (Pfam:PF07275). ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].
Probab=43.20 E-value=21 Score=26.86 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=25.0
Q ss_pred HhcccccccCCCccchhhhhhhcccceeecceeeeccCCCCCc
Q 027843 87 LSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEI 129 (218)
Q Consensus 87 L~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~ 129 (218)
+.+||..|..-- ++=...|+.++.|+|+.+|+=++-|.
T Consensus 50 ~~~lp~N~~a~~-----~~~~~~~~~~i~G~~vi~g~~~~G~~ 87 (95)
T PF12957_consen 50 LKGLPLNRRATR-----LYEHGRHQDPIAGDVVITGPDEDGEF 87 (95)
T ss_pred cccCCcCccccc-----ccccCccCCeeEEEEEEECcCCCCCc
Confidence 345554444322 55667789999999999994444343
No 8
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.17 E-value=8.1 Score=35.22 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=17.6
Q ss_pred ccchhhhhhhcccceeecceeeeccCCC
Q 027843 99 PLLRGVEVGLAHGFLLVGPFVKAGPLRN 126 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLvGPF~klGPLRn 126 (218)
.=.-|+||=+||||+ +.=|.. |+-|
T Consensus 156 aGfDgVeih~ahGyL-l~qFls--p~~N 180 (353)
T cd04735 156 AGFDGVEIHGANGYL-IQQFFS--PHSN 180 (353)
T ss_pred cCCCEEEEccccchH-HHHhcC--CccC
Confidence 446799999999995 555653 5443
No 9
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=31.67 E-value=12 Score=34.64 Aligned_cols=18 Identities=33% Similarity=0.229 Sum_probs=14.5
Q ss_pred CCccchhhhhhhccccee
Q 027843 97 VSPLLRGVEVGLAHGFLL 114 (218)
Q Consensus 97 LSP~~RGLEIGMAHGYfL 114 (218)
...=..|+||=+||||+|
T Consensus 160 ~~aGfDgVEih~ahGyLl 177 (370)
T cd02929 160 RDAGFDIVYVYAAHGYLP 177 (370)
T ss_pred HHcCCCEEEEcccccchH
Confidence 334568999999999975
No 10
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=30.46 E-value=11 Score=34.48 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=21.2
Q ss_pred CCccchhhhhhhcccceeecceeeecc-CCCCCcc
Q 027843 97 VSPLLRGVEVGLAHGFLLVGPFVKAGP-LRNTEIA 130 (218)
Q Consensus 97 LSP~~RGLEIGMAHGYfLvGPF~klGP-LRnte~A 130 (218)
...=..|+||=|||||+| .=|..--. -|+-|++
T Consensus 152 ~~aGfDgVeih~ahGyLl-~qFlSp~~N~RtD~yG 185 (337)
T PRK13523 152 KEAGFDVIEIHGAHGYLI-NEFLSPLSNKRTDEYG 185 (337)
T ss_pred HHcCCCEEEEccccchHH-HHhcCCccCCcCCCCC
Confidence 334568999999999955 56644322 3444555
No 11
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=29.61 E-value=12 Score=34.10 Aligned_cols=16 Identities=50% Similarity=0.679 Sum_probs=13.0
Q ss_pred ccchhhhhhhccccee
Q 027843 99 PLLRGVEVGLAHGFLL 114 (218)
Q Consensus 99 P~~RGLEIGMAHGYfL 114 (218)
.=..|+||=+||||+|
T Consensus 153 aGfDgVeih~ahGyLl 168 (343)
T cd04734 153 GGLDGVELQAAHGHLI 168 (343)
T ss_pred cCCCEEEEccccchHH
Confidence 3457999999999964
No 12
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=27.36 E-value=15 Score=33.90 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=14.3
Q ss_pred ccchhhhhhhcccceeecce
Q 027843 99 PLLRGVEVGLAHGFLLVGPF 118 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLvGPF 118 (218)
.=+-|+||=+||||+| .=|
T Consensus 171 AGfDGVEIh~ahGyLl-~qF 189 (362)
T PRK10605 171 AGFDLVELHSAHGYLL-HQF 189 (362)
T ss_pred cCCCEEEEcccccchH-HHh
Confidence 4456999999999965 444
No 13
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.93 E-value=20 Score=35.01 Aligned_cols=74 Identities=26% Similarity=0.438 Sum_probs=47.0
Q ss_pred cccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccchhhhhhhcc-c---ceeecceeeeccCCCCCcchhhh
Q 027843 59 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAH-G---FLLVGPFVKAGPLRNTEIAGPAG 134 (218)
Q Consensus 59 ~~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAH-G---YfLvGPF~klGPLRnte~A~laG 134 (218)
+.|+| .+||||-|.+||. +..-+-..=|++|+.+--+..++|-.=|- | -==||=| .||----|+|+.-|
T Consensus 77 dtvrp-eddpfvehyqtp~----ileilyeed~~f~ksv~kfie~ieksealigke~irryggf--ygptcvvdfal~pg 149 (500)
T COG4883 77 DTVRP-EDDPFVEHYQTPP----ILEILYEEDPAFHKSVMKFIEEIEKSEALIGKESIRRYGGF--YGPTCVVDFALVPG 149 (500)
T ss_pred cccCC-CCCchhhhccCch----HHHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHHHHhcCc--cCCceEEEEEecCC
Confidence 67899 5899999999995 44444556677777776666666543331 0 0001222 25555568898888
Q ss_pred HHHHH
Q 027843 135 SLAAG 139 (218)
Q Consensus 135 lLsai 139 (218)
.-|-+
T Consensus 150 stsnv 154 (500)
T COG4883 150 STSNV 154 (500)
T ss_pred chHHH
Confidence 77654
No 14
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.90 E-value=14 Score=33.24 Aligned_cols=15 Identities=47% Similarity=0.910 Sum_probs=12.8
Q ss_pred chhhhhhhcccceee
Q 027843 101 LRGVEVGLAHGFLLV 115 (218)
Q Consensus 101 ~RGLEIGMAHGYfLv 115 (218)
..|+||=+||||+|-
T Consensus 163 fDgVeih~a~gyLl~ 177 (338)
T cd04733 163 FDGVQIHAAHGYLLS 177 (338)
T ss_pred CCEEEEchhhhhHHH
Confidence 679999999999653
No 15
>COG5473 Predicted integral membrane protein [Function unknown]
Probab=25.19 E-value=20 Score=33.70 Aligned_cols=120 Identities=29% Similarity=0.490 Sum_probs=58.7
Q ss_pred hHHHHHHHhcccccccCCCccchhhhhhhcccceeecceeeecc--------------------CCCCCcchhhhHHHHH
Q 027843 80 SPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGP--------------------LRNTEIAGPAGSLAAG 139 (218)
Q Consensus 80 S~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGP--------------------LRnte~A~laGlLsai 139 (218)
++.+.|-++. .|+-|+.= =+|+ |++|+||++..|= .|++....-.+.....
T Consensus 73 ~~~~~Ws~g~-----~n~~~ll~---P~ls-gfalI~P~aA~~ly~~S~R~e~~~~~s~~~a~~vr~~p~~pA~~~V~~~ 143 (290)
T COG5473 73 GDAISWSLGR-----ANAVPLLV---PLLS-GFALIGPAAAIGLYEISRRRELGYDASWGHALEVRDSPMTPAILAVMGL 143 (290)
T ss_pred echhhhhhcc-----CCCceeeH---HHHH-HHHhhcchhhhhheeeehhhhhcCcccccceeEEeeccCchHHHHHHHH
Confidence 3345666652 55555532 2333 9999999976652 2333332222222222
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCccccCCCCCCCCCCChhhhhccccceecccchHHHHHHHHH--hhCCCCcc
Q 027843 140 GLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLL--YVLNLPYF 216 (218)
Q Consensus 140 gLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll--~~~~lp~~ 216 (218)
+ ++.-..+.+|+....-..-=.+.+..++++. ..+.+-|..||+.. ++|..-|++||-+.+ +.+..|+.
T Consensus 144 ~--l~alF~lwl~~a~~iy~~~fgi~~p~ti~tF--~~~vltTg~g~~~~----~lG~~~g~vfal~~~~~~v~avp~l 214 (290)
T COG5473 144 G--LFALFALWLYMAQGIYTGCFGIAPPVTISTF--FRLVLTTGLGWALI----FLGNLIGVVFALFFLATTVFAVPLL 214 (290)
T ss_pred H--HHHHHHHHHHHHHHHHhhccCCCCCccHHHH--HHHHhccchhhHHH----HHHHHHHHHHHHHHhhhheeeeeee
Confidence 2 2222334444433221111111233344432 22567788999986 456666777776655 34445543
No 16
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.42 E-value=17 Score=33.88 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=16.0
Q ss_pred CCccchhhhhhhcccceeeccee
Q 027843 97 VSPLLRGVEVGLAHGFLLVGPFV 119 (218)
Q Consensus 97 LSP~~RGLEIGMAHGYfLvGPF~ 119 (218)
...=..|+||=+||||+ +.=|.
T Consensus 154 ~~aGfDgVeih~ahGyL-l~qFL 175 (361)
T cd04747 154 RRLGFDGIELHGAHGYL-IDQFF 175 (361)
T ss_pred HHcCCCEEEEecccchH-HHHhc
Confidence 44456799999999994 44453
No 17
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=24.38 E-value=15 Score=33.18 Aligned_cols=15 Identities=53% Similarity=0.953 Sum_probs=12.4
Q ss_pred chhhhhhhcccceee
Q 027843 101 LRGVEVGLAHGFLLV 115 (218)
Q Consensus 101 ~RGLEIGMAHGYfLv 115 (218)
+-|+||=.||||+|-
T Consensus 163 fDGVEIH~ahGyLl~ 177 (341)
T PF00724_consen 163 FDGVEIHAAHGYLLS 177 (341)
T ss_dssp -SEEEEEESTTSHHH
T ss_pred cCeEeecccchhhhh
Confidence 569999999999764
No 18
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=24.26 E-value=28 Score=34.62 Aligned_cols=68 Identities=28% Similarity=0.498 Sum_probs=42.9
Q ss_pred cccccCCCCCCccccccccCChHHHHHHHhcccccccCCCccc---------hhhhhhh-cccceeecceeeeccCCCCC
Q 027843 59 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLL---------RGVEVGL-AHGFLLVGPFVKAGPLRNTE 128 (218)
Q Consensus 59 ~~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~---------RGLEIGM-AHGYfLvGPF~klGPLRnte 128 (218)
+.|+| .+||||-|-+||+ +-.-+-..=|.+|+.+--+. =|+|.-= .-|| | ||----|
T Consensus 76 ~tvrP-eDDPFVEhyQTP~----ilEILy~eD~~F~ks~~kfi~~I~~sealIg~E~~RrygGF--Y------GpTcVvD 142 (499)
T PF09959_consen 76 DTVRP-EDDPFVEHYQTPA----ILEILYEEDPAFRKSVEKFIEAIGKSEALIGKESARRYGGF--Y------GPTCVVD 142 (499)
T ss_pred cccCC-CCCchHhhccccH----HHHHHHhcCHHHHHHHHHHHHHHhhhHHHhhHHHHHHhcCc--c------CCceeee
Confidence 57999 5899999999996 23333344466666554443 4555422 2232 3 5555568
Q ss_pred cchhhhHHHHH
Q 027843 129 IAGPAGSLAAG 139 (218)
Q Consensus 129 ~A~laGlLsai 139 (218)
+|+.-|.-|-+
T Consensus 143 FAliPGSTsNV 153 (499)
T PF09959_consen 143 FALIPGSTSNV 153 (499)
T ss_pred eeecCCchHHH
Confidence 99988877654
No 19
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=23.51 E-value=1.7e+02 Score=27.68 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=20.2
Q ss_pred ChhhhhccccceecccchHHHHHHHHHh
Q 027843 182 TADGWAKFTGGFFFGGISGVIWAYFLLY 209 (218)
Q Consensus 182 T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~ 209 (218)
..++| ..|||-|.-+|++..|+.=.
T Consensus 246 ~~~~w---gPGFWTGla~Gg~aGYl~G~ 270 (318)
T PF06682_consen 246 GQQNW---GPGFWTGLAAGGAAGYLFGR 270 (318)
T ss_pred CCCCC---CCCchHHHHHHHHHHhhhcc
Confidence 34556 88999999999999998753
No 20
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=23.05 E-value=20 Score=32.77 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=20.2
Q ss_pred cchhhhhhhcccceeecceee-eccCCCCCcc
Q 027843 100 LLRGVEVGLAHGFLLVGPFVK-AGPLRNTEIA 130 (218)
Q Consensus 100 ~~RGLEIGMAHGYfLvGPF~k-lGPLRnte~A 130 (218)
=..|+||=+||||+| .=|.. .=.-|+-|++
T Consensus 165 GfDgVeih~ahGyLl-~qFlSp~~N~R~D~yG 195 (338)
T cd02933 165 GFDGVEIHGANGYLI-DQFLRDGSNKRTDEYG 195 (338)
T ss_pred CCCEEEEccccchhH-HHhcCCccCCCCCcCC
Confidence 457999999999976 55533 2335555665
No 21
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.75 E-value=19 Score=32.71 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=19.0
Q ss_pred ccchhhhhhhcccceeecceeeec-cCCCCCcc
Q 027843 99 PLLRGVEVGLAHGFLLVGPFVKAG-PLRNTEIA 130 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLvGPF~klG-PLRnte~A 130 (218)
.=..|+||-.||||+| .=|..-- .-|.-|++
T Consensus 149 aGfDgVeih~ahGyLl-~qFlsp~~N~RtD~yG 180 (353)
T cd02930 149 AGYDGVEIMGSEGYLI-NQFLAPRTNKRTDEWG 180 (353)
T ss_pred cCCCEEEEecccchHH-HHhcCCccCCCcCccC
Confidence 3457999999999954 4554322 23334454
No 22
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.72 E-value=31 Score=25.09 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=9.8
Q ss_pred hccccceecccch
Q 027843 187 AKFTGGFFFGGIS 199 (218)
Q Consensus 187 s~Ft~GF~iGG~G 199 (218)
.+|+.||++|-++
T Consensus 2 kkF~~G~l~G~~~ 14 (54)
T PF11240_consen 2 KKFGKGFLTGVAA 14 (54)
T ss_pred cchhhhHHHhHHH
Confidence 3689999988543
No 23
>PLN02411 12-oxophytodienoate reductase
Probab=21.88 E-value=22 Score=33.35 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=13.1
Q ss_pred ccchhhhhhhccccee
Q 027843 99 PLLRGVEVGLAHGFLL 114 (218)
Q Consensus 99 P~~RGLEIGMAHGYfL 114 (218)
.=+-|+||=.||||+|
T Consensus 177 AGFDGVEIH~AhGYLl 192 (391)
T PLN02411 177 AGFDGIEIHGAHGYLI 192 (391)
T ss_pred cCCCEEEEccccchHH
Confidence 3357999999999965
No 24
>PHA03049 IMV membrane protein; Provisional
Probab=20.44 E-value=1.2e+02 Score=23.12 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=11.8
Q ss_pred HHHHHHHhhccccCCCC
Q 027843 145 LSICLTIYGIASFSEGE 161 (218)
Q Consensus 145 lTi~LsiYG~~sfq~~~ 161 (218)
.-++|.+||.-+.+...
T Consensus 13 aIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 13 VIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHhccccc
Confidence 44567889988776643
Done!