Query 027843
Match_columns 218
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 18:14:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027843.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2210-2214//hhsearch_pdb/027843hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_L Photosystem I reaction 1.0 1 1 642.6 0.6 215 1-218 1-216 (216)
2 1jb0_L Photosystem 1 reaction 1.0 1 1 486.8 1.3 147 58-217 2-149 (154)
3 4gbu_A NADPH dehydrogenase 1; 1.0 1 1 21.0 -1.3 17 98-114 183-199 (400)
4 4a3u_A NCR, NADH\:flavin oxido 1.0 1 1 20.6 -1.3 26 98-126 163-188 (358)
5 3l5a_A NADH/flavin oxidoreduct 1.0 1 1 19.8 -1.3 29 99-130 182-213 (419)
6 2hsa_B 12-oxophytodienoate red 1.0 1 1 19.7 -1.3 24 100-126 184-207 (402)
7 3tjl_A NADPH dehydrogenase; OL 1.0 1 1 19.3 -1.3 27 97-126 178-204 (407)
8 3gr7_A NADPH dehydrogenase; fl 1.0 1 1 19.2 -1.3 25 99-126 156-180 (340)
9 4ab4_A Xenobiotic reductase B; 1.0 1 1 18.9 -1.3 25 99-126 165-189 (362)
10 2gou_A Oxidoreductase, FMN-bin 1.0 1 1 18.6 -1.3 17 99-115 173-189 (365)
No 1
>2wsc_L Photosystem I reaction center subunit XI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_L* 2wsf_L* 2o01_L* 3lw5_L*
Probab=1.00 E-value=1 Score=642.59 Aligned_cols=215 Identities=78% Similarity=1.284 Sum_probs=209.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9765674100001346655545431356776999-842678889820012221278764200248899986313565677
Q 027843 1 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSP-FRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITS 79 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~IkP~~~DPfvGnLaTPVnS 79 (218)
|||++|||||||||+|+|+.+ ++|||+||++ ++..++||+++|+||+||++++..|+|||||+|||||||+|||||
T Consensus 1 ~~t~~~~ma~~~~~~~~s~~~---~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~I~p~~~DPfvG~L~TPVns 77 (216)
T 2wsc_L 1 MAATTSPMASQLKSGFTTKAL---VVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTS 77 (216)
T ss_dssp -------------------------------------------------------CCSSSSCCSSSSCSSSCCCCCTTTS
T ss_pred CCCCCCHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHEECCCCCCCCCCCCCCCCC
T ss_conf 974326179998653024444---46676568863356765566651788874378354300047999840200576456
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 29999997326443467794201233210001043311110014789774102567889999999999998751254588
Q 027843 80 SPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGGLVVILSICLTIYGIASFSE 159 (218)
Q Consensus 80 S~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLsaigLV~IlTi~LsiYG~~sfq~ 159 (218)
|+++||||+||||||+||||++|||||||||||||+|||+|||||||||+|+++|+|+++|||+|+|+||+|||.++||+
T Consensus 78 S~~t~~fl~NLPaYR~GLSP~lRGLEIGmAHGYfLvGPF~klGPLRnte~A~laGlLsaigLV~ILT~~LsiYg~~sf~~ 157 (216)
T 2wsc_L 78 SPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKE 157 (216)
T ss_dssp CTTTTTTTCSSSSSSCCSCHHHHHHHHHHHTTSSSSGGGTTSCSSCSCCSSSCSSCTTTTTHHHHHTTTTTTTTTSCCCC
T ss_pred CHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 09999998418100145876662324310021478542551225668216888889999999999999999854565566
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999998643589999997877234620124220134017999999985179883139
Q 027843 160 GEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218 (218)
Q Consensus 160 ~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~~lp~~~~ 218 (218)
+++.++|..|+|+|++++|+|||+|||+||++||||||||||+|||+||+|+++|||+|
T Consensus 158 ~~~~~~p~~t~t~r~~~~~~L~T~~GWs~Ft~GF~iGG~GGA~fAy~Ll~n~~l~~~~~ 216 (216)
T 2wsc_L 158 GEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216 (216)
T ss_dssp CCCCCCSCCSCCCTTTCSSCCCCHHHHHHHHHHHHHHHBTTTHHHHHSCCCCCCCC---
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCHHHHHHHHHHCCCHHHHCC
T ss_conf 78776764321246677333647333877135436405519999999996136065409
No 2
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=1.00 E-value=1 Score=486.79 Aligned_cols=147 Identities=44% Similarity=0.930 Sum_probs=139.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEECCEEEECCCCCCCCCHHHHHHH
Q ss_conf 42002488999863135656772999999732644346779420123321000104331111001478977410256788
Q 027843 58 YQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLA 137 (218)
Q Consensus 58 ~~~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLs 137 (218)
+|+|||||+|||||||+||||||++|||||+||||||+||||++|||||||||||||+|||+|+|||||||+|+++|+|+
T Consensus 2 ~~~i~p~~~DP~vG~L~TPinsS~~t~~fl~NLPaYR~GLSp~~RGLEiGmAHGYfL~GPF~~lGPLRnte~a~laGlls 81 (154)
T 1jb0_L 2 EELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLIS 81 (154)
T ss_dssp --CCEEGGGCTTBBCEECHHHHCHHHHHHHHTSTTTCTTCCHHHHHHHHHHHHHHHHTHHHHHHSTTTTSTTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHCCCCCCCCHHHHHHHHH
T ss_conf 61022789999512016774561999999850820135698776243650201113534567413676830688889999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHCC-CCCC
Q ss_conf 999999999999875125458899999998643589999997877234620124220134017999999985179-8831
Q 027843 138 AGGLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLN-LPYF 216 (218)
Q Consensus 138 aigLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~~-lp~~ 216 (218)
|+|||+|+|+||++||.++||++++ .+++|||+|||+||++||||||||||+|||+||+|++ ++++
T Consensus 82 aiglv~IlT~~LsiYg~~~f~~~~~-------------~~~~l~t~~gWs~Ft~GF~iGg~GGa~~Ay~Ll~~~~~i~~i 148 (154)
T 1jb0_L 82 GIALILVATACLAAYGLVSFQKGGS-------------SSDPLKTSEGWSQFTAGFFVGAMGSAFVAFFLLENFLVVDGI 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCC-------------SSCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCC-------------CCCCCCCCCCHHHCCCCEEEECCCHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999999864676687888-------------731144754686715541540451999999999531006899
Q ss_pred C
Q ss_conf 3
Q 027843 217 V 217 (218)
Q Consensus 217 ~ 217 (218)
+
T Consensus 149 ~ 149 (154)
T 1jb0_L 149 M 149 (154)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 3
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=1.00 E-value=1 Score=21.04 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHCCCCEE
Q ss_conf 94201233210001043
Q 027843 98 SPLLRGVEVGLAHGFLL 114 (218)
Q Consensus 98 SP~~RGLEIGMAHGYfL 114 (218)
..=+-|+||-.||||+|
T Consensus 183 ~AGFDgVEIH~AhGYLl 199 (400)
T 4gbu_A 183 AAGADGVEIHSANGYLL 199 (400)
T ss_dssp HTTCSEEEEECCTTSHH
T ss_pred HCCCCEEEECCCCCCHH
T ss_conf 55967455020466428
No 4
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=1.00 E-value=1 Score=20.57 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHCCCCEEECCEEEECCCCC
Q ss_conf 94201233210001043311110014789
Q 027843 98 SPLLRGVEVGLAHGFLLVGPFVKAGPLRN 126 (218)
Q Consensus 98 SP~~RGLEIGMAHGYfLvGPF~klGPLRn 126 (218)
..=+-|+||-.||||+| .-| |-|+-|
T Consensus 163 ~AGFDgVEIH~ahGYLl-~QF--LSp~tN 188 (358)
T 4a3u_A 163 KAGFDGVQIHAANGYLI-DEF--IRDSTN 188 (358)
T ss_dssp HTTCSEEEEEECTTSHH-HHH--HSTTTC
T ss_pred HCCCCEEEECCCCCCCH-HHC--EECCCC
T ss_conf 83998586333688728-750--463119
No 5
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=1.00 E-value=1 Score=19.82 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=19.1
Q ss_pred CCCHHHHHHHCCCCEEECCEEEECCC---CCCCCC
Q ss_conf 42012332100010433111100147---897741
Q 027843 99 PLLRGVEVGLAHGFLLVGPFVKAGPL---RNTEIA 130 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLvGPF~klGPL---Rnte~A 130 (218)
.=+-|+||-+||||+| .-| |-|. |+-++.
T Consensus 182 AGfDgVEIH~ahGYLl-~QF--lSp~~N~RtD~yG 213 (419)
T 3l5a_A 182 AGFDGVEISIAQRLLI-QTF--FSTFSNRRTDHYG 213 (419)
T ss_dssp TTCSEEEEECCTTSHH-HHH--HCTTTCCCCSTTS
T ss_pred CCCCEEEECCCCCHHH-HHC--CCCCCCCCCCCCC
T ss_conf 5999999998663588-871--4885555366778
No 6
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=1.00 E-value=1 Score=19.72 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=16.4
Q ss_pred CCHHHHHHHCCCCEEECCEEEECCCCC
Q ss_conf 201233210001043311110014789
Q 027843 100 LLRGVEVGLAHGFLLVGPFVKAGPLRN 126 (218)
Q Consensus 100 ~~RGLEIGMAHGYfLvGPF~klGPLRn 126 (218)
=+.|+||-+||||+| .-|. -|..|
T Consensus 184 GfDgVEIh~ahGYLl-~QFL--sp~~N 207 (402)
T 2hsa_B 184 GFDGIEIHGAHGYLI-DQFL--KDGIN 207 (402)
T ss_dssp TCSEEEEECCTTSHH-HHHH--CTTTC
T ss_pred CCCEEEECCCCCHHH-HHCC--CCCCC
T ss_conf 999899877554477-7525--97557
No 7
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=1.00 E-value=1 Score=19.32 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHCCCCEEECCEEEECCCCC
Q ss_conf 794201233210001043311110014789
Q 027843 97 VSPLLRGVEVGLAHGFLLVGPFVKAGPLRN 126 (218)
Q Consensus 97 LSP~~RGLEIGMAHGYfLvGPF~klGPLRn 126 (218)
...=+-|+||-+||||+| .-| |-|+-|
T Consensus 178 ~~aGfdgveih~~~GYLl-~QF--Lsp~~N 204 (407)
T 3tjl_A 178 MDAGFDYIELHAAHGYLL-DQF--LQPCTN 204 (407)
T ss_dssp HHTTCSEEEEECCTTSHH-HHH--HSTTTC
T ss_pred HHHCCCEEEECCCCCHHH-HHH--CCCCCC
T ss_conf 983999699988552179-884--475026
No 8
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=1.00 E-value=1 Score=19.17 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=17.2
Q ss_pred CCCHHHHHHHCCCCEEECCEEEECCCCC
Q ss_conf 4201233210001043311110014789
Q 027843 99 PLLRGVEVGLAHGFLLVGPFVKAGPLRN 126 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLvGPF~klGPLRn 126 (218)
.=+-|+||-+||||+| .-| |-|.-|
T Consensus 156 aGfDgVEih~a~GyLl-~qF--lsp~~N 180 (340)
T 3gr7_A 156 AGFDVIEIHAAHGYLI-NEF--LSPLSN 180 (340)
T ss_dssp HTCSEEEEEECTTCHH-HHH--HCTTTC
T ss_pred CCCCEEEECCCCCHHH-HHC--CCCCCC
T ss_conf 3999999856553689-870--798657
No 9
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=1.00 E-value=1 Score=18.91 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=17.8
Q ss_pred CCCHHHHHHHCCCCEEECCEEEECCCCC
Q ss_conf 4201233210001043311110014789
Q 027843 99 PLLRGVEVGLAHGFLLVGPFVKAGPLRN 126 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLvGPF~klGPLRn 126 (218)
.=+-|+||-+||||+| .-| |-|.-|
T Consensus 165 aGfDgVEih~a~GYLl-~QF--LSp~~N 189 (362)
T 4ab4_A 165 AGFDGVEIHGANGYLL-DQF--LQSSTN 189 (362)
T ss_dssp TTCSEEEEECCTTSHH-HHH--HSTTTC
T ss_pred CCCCEEEECCCCCCHH-HHH--CCCCCC
T ss_conf 5999999888675278-761--497345
No 10
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=1.00 E-value=1 Score=18.62 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.8
Q ss_pred CCCHHHHHHHCCCCEEE
Q ss_conf 42012332100010433
Q 027843 99 PLLRGVEVGLAHGFLLV 115 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLv 115 (218)
.-..|+||-+||||+|-
T Consensus 173 aGfDgVeih~a~gYLl~ 189 (365)
T 2gou_A 173 AGFDGIELHAANGYLIN 189 (365)
T ss_dssp TTCSEEEEECCTTSHHH
T ss_pred CCCCEEEEECCCCHHHH
T ss_conf 49998998065533576
Done!