Query 027843
Match_columns 218
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 13730
Date Tue Mar 26 18:15:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027843.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2210-2214//hhsearch_scop/027843hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0l_ f.31.1.1 (L:) Photosys 100.0 0 0 474.9 3.2 140 60-212 1-140 (151)
2 d1djqa1 c.1.4.1 (A:1-340) Trim 27.9 3.3 0.00024 19.1 -1.3 29 95-126 157-185 (340)
3 d1ps9a1 c.1.4.1 (A:1-330) 2,4- 27.3 3.5 0.00025 19.0 -1.3 32 99-131 153-185 (330)
4 d1vyra_ c.1.4.1 (A:) Pentaeryt 26.7 3.5 0.00026 19.0 -1.3 29 99-130 172-203 (363)
5 d1icpa_ c.1.4.1 (A:) 12-oxophy 26.3 3.6 0.00026 18.9 -1.3 16 99-114 170-185 (364)
6 d1q45a_ c.1.4.1 (A:) 12-oxophy 24.1 4.2 0.00031 18.5 -1.3 30 82-115 157-187 (380)
7 d1oyaa_ c.1.4.1 (A:) Old yello 22.5 4.9 0.00036 18.1 -1.3 16 99-114 183-198 (399)
8 d1z41a1 c.1.4.1 (A:2-338) NADP 22.1 4.9 0.00035 18.2 -1.3 36 98-136 154-189 (337)
9 d1gwja_ c.1.4.1 (A:) Morphinon 21.8 5 0.00036 18.1 -1.3 31 99-130 175-206 (374)
10 d1dxha2 c.78.1.1 (A:151-335) O 12.9 23 0.0017 14.3 0.3 17 90-106 124-151 (185)
No 1
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=100.00 E-value=0 Score=474.95 Aligned_cols=140 Identities=46% Similarity=0.979 Sum_probs=134.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEECCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 00248899986313565677299999973264434677942012332100010433111100147897741025678899
Q 027843 60 VIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAG 139 (218)
Q Consensus 60 ~IkP~~~DPfvGnLaTPVnSS~~tk~fL~NLPaYR~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlLsai 139 (218)
+|||||+|||||||+||||||+++||||+||||||+||||++|||||||||||||+|||+|+|||||||+|+++|+|+|+
T Consensus 1 ~i~p~~~DP~vG~L~TPVnsS~~~k~fi~NLP~YR~GlSp~~RGLEiGmAHGYfL~GPF~~lGPLRnt~~a~~aGllsai 80 (151)
T d1jb0l_ 1 LVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGI 80 (151)
T ss_dssp CCEEGGGCTTBBCEECHHHHCHHHHHHHHTSTTTCTTCCHHHHHHHHHHHHHHHHTHHHHHHSTTTTSTTHHHHHHHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCEEEEECHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 96367899934420676466199999985081002559855535577232001265626650577683588888999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHCC
Q ss_conf 9999999999875125458899999998643589999997877234620124220134017999999985179
Q 027843 140 GLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLN 212 (218)
Q Consensus 140 gLV~IlTi~LsiYG~~sfq~~~p~~~~~~tlt~~~~~~~~L~T~eGWs~Ft~GF~iGG~GGA~fAy~Ll~~~~ 212 (218)
|||+|+|+||++||.++||++.+ .+|+|||+|||+||++|||+||||||+|||+||+|+.
T Consensus 81 glv~Ilt~~L~lYg~~sf~~~~~-------------~~d~l~t~~gWs~F~~GF~~Gg~GGa~fAy~Ll~n~~ 140 (151)
T d1jb0l_ 81 ALILVATACLAAYGLVSFQKGGS-------------SSDPLKTSEGWSQFTAGFFVGAMGSAFVAFFLLENFL 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC-------------SSCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCC-------------CCCCCCCCCCHHHHHCHHHHCCCCHHHHHHHHHCCHH
T ss_conf 99999999999962666788999-------------8310337114888612102102538999999990249
No 2
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=27.87 E-value=3.3 Score=19.13 Aligned_cols=29 Identities=28% Similarity=0.174 Sum_probs=18.2
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCEEEECCCCC
Q ss_conf 67794201233210001043311110014789
Q 027843 95 TAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRN 126 (218)
Q Consensus 95 ~GLSP~~RGLEIGMAHGYfLvGPF~klGPLRn 126 (218)
.....=+-|+||-.||||+| .-| |-|+-|
T Consensus 157 ~a~~aGfDgVEih~ahGyLl-~qF--ls~~~N 185 (340)
T d1djqa1 157 RSRDAGFDIVYVYGAHSYLP-LQF--LNPYYN 185 (340)
T ss_dssp HHHHHTCSEEEEEECTTCHH-HHH--HCTTTC
T ss_pred HHHHHCCCEEEEECCCCCHH-HHH--HHHCCC
T ss_conf 99870524000003564011-001--320155
No 3
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.33 E-value=3.5 Score=18.97 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=19.8
Q ss_pred CCCHHHHHHHCCCCEEECCEE-EECCCCCCCCCH
Q ss_conf 420123321000104331111-001478977410
Q 027843 99 PLLRGVEVGLAHGFLLVGPFV-KAGPLRNTEIAG 131 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLvGPF~-klGPLRnte~A~ 131 (218)
.=+-|+||-+||||+| .-|. ..--.|+-++..
T Consensus 153 AGfDgVEIh~ahGyLl-~qFlSp~~N~RtDeYGG 185 (330)
T d1ps9a1 153 AGYDGVEVMGSEGYLI-NEFLTLRTNQRSDQWGG 185 (330)
T ss_dssp TTCSEEEEEECBTSHH-HHHHCTTTCCCCSTTSS
T ss_pred HCCCEEEECCCHHHHH-HHHHHHHCCCCCCCCCC
T ss_conf 4967564100367777-88887524544566772
No 4
>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}
Probab=26.72 E-value=3.5 Score=18.95 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=18.9
Q ss_pred CCCHHHHHHHCCCCEEECCEEEECCC---CCCCCC
Q ss_conf 42012332100010433111100147---897741
Q 027843 99 PLLRGVEVGLAHGFLLVGPFVKAGPL---RNTEIA 130 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLvGPF~klGPL---Rnte~A 130 (218)
.=+-|+||-.|||| |+.-|. -|+ |+-|+.
T Consensus 172 aGfDgVEIH~ahGY-Ll~qFl--Sp~~N~RtDeYG 203 (363)
T d1vyra_ 172 AGFDLVELHSAHGY-LLHQFL--SPSSNQRTDQYG 203 (363)
T ss_dssp TTCSEEEEEECTTS-HHHHHH--CTTTCCCCSTTS
T ss_pred HCCCEEEECCCCCE-EEEEEE--CCCCCCCCCCCC
T ss_conf 51340345146710-311144--676656665446
No 5
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}
Probab=26.27 E-value=3.6 Score=18.88 Aligned_cols=16 Identities=44% Similarity=0.737 Sum_probs=13.0
Q ss_pred CCCHHHHHHHCCCCEE
Q ss_conf 4201233210001043
Q 027843 99 PLLRGVEVGLAHGFLL 114 (218)
Q Consensus 99 P~~RGLEIGMAHGYfL 114 (218)
.=+-|+||-+||||+|
T Consensus 170 AGfDgVeIH~ahGyLl 185 (364)
T d1icpa_ 170 AGFDGVEIHGAHGYLI 185 (364)
T ss_dssp TTCSEEEEEECTTSHH
T ss_pred HCCCEEEEECCCCCHH
T ss_conf 3998689830576213
No 6
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}
Probab=24.10 E-value=4.2 Score=18.51 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=18.1
Q ss_pred HHHHHHHC-CCCCCCCCCCCCHHHHHHHCCCCEEE
Q ss_conf 99999732-64434677942012332100010433
Q 027843 82 LIAWYLSN-LPAYRTAVSPLLRGVEVGLAHGFLLV 115 (218)
Q Consensus 82 ~tk~fL~N-LPaYR~GLSP~~RGLEIGMAHGYfLv 115 (218)
++..|.+. .=+..-| +-|+||-.||||+|-
T Consensus 157 ii~~f~~aA~~A~~aG----fDgVEIh~ahGyLl~ 187 (380)
T d1q45a_ 157 VVEDYCLSALNAIRAG----FDGIEIHGAHGYLID 187 (380)
T ss_dssp HHHHHHHHHHHHHHHT----CSEEEEEECTTSHHH
T ss_pred HHHHHHHHHHHHHHHC----CCEEEECCCHHHHHH
T ss_conf 9999999999999828----653660002113676
No 7
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}
Probab=22.45 E-value=4.9 Score=18.14 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=13.1
Q ss_pred CCCHHHHHHHCCCCEE
Q ss_conf 4201233210001043
Q 027843 99 PLLRGVEVGLAHGFLL 114 (218)
Q Consensus 99 P~~RGLEIGMAHGYfL 114 (218)
.=+-|+||-.||||+|
T Consensus 183 AGfDgVEIH~aHGYLl 198 (399)
T d1oyaa_ 183 AGADGVEIHSANGYLL 198 (399)
T ss_dssp TTCSEEEEECCTTSHH
T ss_pred HCCCEEEHHHHHHHHH
T ss_conf 0975676124377789
No 8
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}
Probab=22.10 E-value=4.9 Score=18.16 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHCCCCEEECCEEEECCCCCCCCCHHHHHH
Q ss_conf 942012332100010433111100147897741025678
Q 027843 98 SPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSL 136 (218)
Q Consensus 98 SP~~RGLEIGMAHGYfLvGPF~klGPLRnte~A~laGlL 136 (218)
..=+-|+||-.||||+| .-| |-|.-|.-.-.-.|.+
T Consensus 154 ~AGfDGVEiH~ahGyLl-~qF--lSp~~N~RtDeYGGs~ 189 (337)
T d1z41a1 154 EAGFDVIEIHAAHGYLI-HEF--LSPLSNHRTDEYGGSP 189 (337)
T ss_dssp HTTCSEEEEEECTTSHH-HHH--HCTTTCCCCSTTSSSH
T ss_pred HCCCCEEEEECCCCCEE-EEE--CCCCCCCCCCCCCCHH
T ss_conf 83998588643675221-032--2774334454445156
No 9
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}
Probab=21.80 E-value=5 Score=18.10 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=18.2
Q ss_pred CCCHHHHHHHCCCCEEECCEE-EECCCCCCCCC
Q ss_conf 420123321000104331111-00147897741
Q 027843 99 PLLRGVEVGLAHGFLLVGPFV-KAGPLRNTEIA 130 (218)
Q Consensus 99 P~~RGLEIGMAHGYfLvGPF~-klGPLRnte~A 130 (218)
.=+-|+||-.||||+| .-|. ..--.|+-|+.
T Consensus 175 AGfDgVEIH~ahGYLl-~qFLSp~~N~RtDeYG 206 (374)
T d1gwja_ 175 AGFDMVEVHAANACLP-NQFLATGTNRRTDQYG 206 (374)
T ss_dssp TTCSEEEEEECTTCHH-HHHHSTTTCCCCSTTS
T ss_pred HCCCEEEECCCHHHHH-HHHHHHHCCCCCCCCC
T ss_conf 0998887322203467-7888753576445434
No 10
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.86 E-value=23 Score=14.33 Aligned_cols=17 Identities=41% Similarity=0.749 Sum_probs=0.0
Q ss_pred CCCCCC-----------CCCCCCHHHHH
Q ss_conf 644346-----------77942012332
Q 027843 90 LPAYRT-----------AVSPLLRGVEV 106 (218)
Q Consensus 90 LPaYR~-----------GLSP~~RGLEI 106 (218)
||++|. ...|.-||.||
T Consensus 124 LPa~r~~~~~~~~~~~~~~~~~~rg~Ei 151 (185)
T d1dxha2 124 LPAFHNSETKVGKQIAEQYPNLANGIEV 151 (185)
T ss_dssp SCCCCSSSSHHHHHHHHHCGGGGGBSSB
T ss_pred CCHHCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 7110242015679999871766674697
Done!