Query 027845
Match_columns 218
No_of_seqs 130 out of 1210
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 16:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 8.2E-54 1.8E-58 361.5 21.8 211 5-217 1-217 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 7.1E-52 1.5E-56 345.2 19.2 211 5-217 12-228 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 2.1E-50 4.6E-55 330.5 16.6 185 5-210 3-193 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 6.4E-49 1.4E-53 336.6 21.7 208 4-215 12-232 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 5.3E-49 1.1E-53 333.6 20.6 205 7-215 1-215 (317)
6 PRK10625 tas putative aldo-ket 100.0 1.4E-47 2.9E-52 328.5 20.8 206 5-215 1-243 (346)
7 KOG1577 Aldo/keto reductase fa 100.0 2.8E-48 6E-53 318.3 15.5 188 1-211 1-212 (300)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 3E-47 6.5E-52 318.0 20.8 201 7-213 1-206 (285)
9 PLN02587 L-galactose dehydroge 100.0 6.1E-47 1.3E-51 320.6 20.4 203 7-215 1-214 (314)
10 PRK10376 putative oxidoreducta 100.0 2.5E-46 5.3E-51 313.6 21.7 208 1-211 1-217 (290)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.6E-44 3.5E-49 301.2 17.0 190 19-214 1-196 (283)
12 PRK14863 bifunctional regulato 100.0 2.6E-44 5.7E-49 301.2 17.4 188 14-214 2-200 (292)
13 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.9E-44 1.1E-48 296.4 18.2 175 16-211 2-183 (267)
14 COG4989 Predicted oxidoreducta 100.0 1.8E-44 3.9E-49 285.4 13.0 206 5-214 1-218 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.3E-42 2.8E-47 288.9 18.0 186 1-211 1-191 (275)
16 COG1453 Predicted oxidoreducta 100.0 8.9E-40 1.9E-44 271.5 15.5 202 5-214 1-212 (391)
17 KOG1576 Predicted oxidoreducta 100.0 2.3E-39 5E-44 258.4 16.3 209 4-215 21-239 (342)
18 KOG3023 Glutamate-cysteine lig 98.1 6E-06 1.3E-10 66.1 5.8 70 136-207 156-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 95.0 1.1 2.4E-05 37.9 13.7 153 36-209 134-288 (316)
20 cd03316 MR_like Mandelate race 91.3 8.8 0.00019 32.9 13.7 153 36-208 139-299 (357)
21 COG1748 LYS9 Saccharopine dehy 88.0 2.9 6.4E-05 36.6 7.9 81 38-132 79-159 (389)
22 PRK13958 N-(5'-phosphoribosyl) 87.9 1.7 3.6E-05 34.7 5.9 67 112-180 16-83 (207)
23 PRK01222 N-(5'-phosphoribosyl) 84.5 2.8 6E-05 33.5 5.6 67 113-181 19-86 (210)
24 cd03174 DRE_TIM_metallolyase D 84.4 20 0.00044 29.1 11.3 147 35-198 16-187 (265)
25 PF07021 MetW: Methionine bios 84.2 3.4 7.3E-05 32.6 5.7 149 42-211 5-170 (193)
26 PRK10550 tRNA-dihydrouridine s 82.7 29 0.00062 29.5 12.5 132 36-178 73-223 (312)
27 PRK13796 GTPase YqeH; Provisio 82.5 32 0.0007 29.9 13.1 123 35-167 54-179 (365)
28 cd03315 MLE_like Muconate lact 82.3 26 0.00056 28.7 15.3 154 36-209 85-240 (265)
29 cd03174 DRE_TIM_metallolyase D 81.4 7.7 0.00017 31.6 7.3 103 100-205 16-133 (265)
30 cd03321 mandelate_racemase Man 80.8 32 0.0007 29.6 11.2 152 37-207 142-295 (355)
31 PRK00730 rnpA ribonuclease P; 79.8 14 0.0003 27.5 7.3 63 78-148 46-110 (138)
32 KOG0259 Tyrosine aminotransfer 79.5 43 0.00094 29.5 11.1 145 35-209 78-241 (447)
33 TIGR00126 deoC deoxyribose-pho 79.4 8.1 0.00018 30.9 6.5 72 36-120 130-205 (211)
34 PF00682 HMGL-like: HMGL-like 79.2 13 0.00029 29.8 7.9 150 35-198 11-178 (237)
35 cd04740 DHOD_1B_like Dihydroor 78.9 37 0.0008 28.3 11.6 150 36-199 100-285 (296)
36 COG1140 NarY Nitrate reductase 78.6 0.94 2E-05 39.2 0.9 54 148-202 263-317 (513)
37 PLN02389 biotin synthase 78.2 47 0.001 29.1 11.6 101 35-150 116-227 (379)
38 cd07943 DRE_TIM_HOA 4-hydroxy- 78.0 37 0.0008 27.9 14.1 146 34-198 18-182 (263)
39 PF05690 ThiG: Thiazole biosyn 77.2 14 0.0003 30.2 7.1 131 17-170 8-143 (247)
40 PRK08392 hypothetical protein; 76.8 36 0.00077 27.1 10.7 146 40-205 16-179 (215)
41 PLN02363 phosphoribosylanthran 75.8 8.9 0.00019 31.7 5.9 75 101-181 56-131 (256)
42 COG2069 CdhD CO dehydrogenase/ 75.6 40 0.00087 28.6 9.6 95 109-209 156-260 (403)
43 cd06543 GH18_PF-ChiA-like PF-C 75.4 49 0.0011 27.9 13.8 161 36-209 88-262 (294)
44 PRK08195 4-hyroxy-2-oxovalerat 75.4 52 0.0011 28.3 14.9 146 34-198 21-185 (337)
45 COG1801 Uncharacterized conser 73.9 50 0.0011 27.4 11.1 109 19-132 4-115 (263)
46 PRK05283 deoxyribose-phosphate 73.5 14 0.0003 30.6 6.5 79 36-122 144-227 (257)
47 PF04476 DUF556: Protein of un 73.0 27 0.00057 28.5 7.8 142 45-199 14-180 (235)
48 cd03323 D-glucarate_dehydratas 72.4 68 0.0015 28.2 14.1 152 35-209 167-321 (395)
49 PRK05414 urocanate hydratase; 72.3 12 0.00026 33.9 6.1 123 44-181 118-268 (556)
50 cd00739 DHPS DHPS subgroup of 72.2 36 0.00078 28.1 8.7 100 100-206 21-126 (257)
51 TIGR00735 hisF imidazoleglycer 72.2 38 0.00083 27.7 8.9 88 112-203 163-253 (254)
52 TIGR01228 hutU urocanate hydra 72.2 12 0.00026 33.8 6.0 123 44-181 109-259 (545)
53 COG0135 TrpF Phosphoribosylant 71.9 12 0.00026 30.0 5.5 77 114-198 19-96 (208)
54 PRK09427 bifunctional indole-3 71.4 11 0.00025 33.8 5.9 65 113-181 273-338 (454)
55 cd03322 rpsA The starvation se 71.0 69 0.0015 27.7 13.9 145 36-207 126-272 (361)
56 TIGR00126 deoC deoxyribose-pho 69.7 56 0.0012 26.1 10.0 136 33-182 13-157 (211)
57 TIGR02026 BchE magnesium-proto 69.5 47 0.001 30.1 9.6 67 131-199 318-391 (497)
58 cd00740 MeTr MeTr subgroup of 68.2 66 0.0014 26.4 10.4 100 100-207 23-126 (252)
59 TIGR03822 AblA_like_2 lysine-2 68.1 75 0.0016 27.0 12.2 123 36-170 120-253 (321)
60 PRK00208 thiG thiazole synthas 67.9 68 0.0015 26.4 14.1 77 98-176 71-148 (250)
61 smart00642 Aamy Alpha-amylase 66.9 9.8 0.00021 29.1 4.0 24 184-208 68-91 (166)
62 PRK09058 coproporphyrinogen II 66.8 49 0.0011 29.6 9.0 61 99-161 226-304 (449)
63 PRK13803 bifunctional phosphor 66.3 17 0.00037 33.9 6.2 68 114-181 20-88 (610)
64 COG3623 SgaU Putative L-xylulo 66.0 8.2 0.00018 31.5 3.5 76 12-88 65-155 (287)
65 cd00423 Pterin_binding Pterin 65.7 67 0.0014 26.3 9.1 101 100-207 21-127 (258)
66 cd00308 enolase_like Enolase-s 65.2 63 0.0014 25.7 8.7 85 121-210 120-206 (229)
67 PRK09061 D-glutamate deacylase 65.2 69 0.0015 29.2 9.8 108 40-153 171-279 (509)
68 TIGR03597 GTPase_YqeH ribosome 64.9 67 0.0014 27.8 9.3 121 35-165 48-171 (360)
69 PRK08609 hypothetical protein; 64.8 1.2E+02 0.0026 28.2 14.0 149 40-205 351-523 (570)
70 TIGR03217 4OH_2_O_val_ald 4-hy 64.7 91 0.002 26.8 15.0 116 34-168 20-149 (333)
71 TIGR01278 DPOR_BchB light-inde 64.3 69 0.0015 29.2 9.6 101 66-178 69-194 (511)
72 PF01175 Urocanase: Urocanase; 63.9 15 0.00033 33.3 5.1 125 42-181 106-258 (546)
73 PRK00507 deoxyribose-phosphate 63.6 25 0.00054 28.4 5.9 75 36-120 134-209 (221)
74 COG0635 HemN Coproporphyrinoge 63.5 63 0.0014 28.7 9.0 60 100-161 201-276 (416)
75 PRK00164 moaA molybdenum cofac 63.1 93 0.002 26.3 11.3 148 35-199 49-223 (331)
76 PRK14461 ribosomal RNA large s 62.9 62 0.0013 28.3 8.5 85 124-211 232-352 (371)
77 PRK14465 ribosomal RNA large s 62.1 85 0.0018 27.2 9.2 91 79-169 104-207 (342)
78 PRK04390 rnpA ribonuclease P; 61.9 57 0.0012 23.5 7.5 64 78-148 44-110 (120)
79 COG3172 NadR Predicted ATPase/ 61.5 38 0.00081 26.3 6.1 96 50-149 79-185 (187)
80 PRK07259 dihydroorotate dehydr 61.4 96 0.0021 25.9 10.3 152 36-199 102-288 (301)
81 COG1751 Uncharacterized conser 61.0 46 0.00099 25.4 6.4 75 34-119 10-85 (186)
82 TIGR01502 B_methylAsp_ase meth 60.4 74 0.0016 28.2 8.8 85 122-208 265-356 (408)
83 COG2355 Zn-dependent dipeptida 60.2 1.1E+02 0.0024 26.2 9.4 106 39-158 150-260 (313)
84 PRK05692 hydroxymethylglutaryl 60.1 53 0.0011 27.6 7.6 101 100-204 23-137 (287)
85 PRK14457 ribosomal RNA large s 60.0 1.1E+02 0.0023 26.5 9.6 91 79-170 100-202 (345)
86 TIGR02534 mucon_cyclo muconate 59.8 1.2E+02 0.0025 26.3 14.0 149 41-209 146-298 (368)
87 PRK10415 tRNA-dihydrouridine s 59.6 1.1E+02 0.0024 26.0 10.3 134 36-179 75-224 (321)
88 TIGR03247 glucar-dehydr glucar 59.3 1.3E+02 0.0029 26.9 13.6 155 36-207 180-336 (441)
89 cd03325 D-galactonate_dehydrat 58.9 1.2E+02 0.0025 26.1 14.9 153 36-207 123-285 (352)
90 PRK03031 rnpA ribonuclease P; 58.9 66 0.0014 23.2 7.2 64 78-148 47-114 (122)
91 TIGR02370 pyl_corrinoid methyl 58.8 87 0.0019 24.6 9.7 148 36-199 10-163 (197)
92 cd00959 DeoC 2-deoxyribose-5-p 57.4 37 0.0008 26.7 5.9 70 36-118 129-202 (203)
93 cd03329 MR_like_4 Mandelate ra 57.2 1.3E+02 0.0028 26.0 14.3 152 36-207 143-299 (368)
94 CHL00162 thiG thiamin biosynth 57.2 1.1E+02 0.0024 25.3 9.0 71 99-170 80-157 (267)
95 TIGR01496 DHPS dihydropteroate 57.1 1.1E+02 0.0024 25.2 10.1 98 100-206 20-124 (257)
96 cd07948 DRE_TIM_HCS Saccharomy 56.9 1.1E+02 0.0024 25.2 11.2 25 35-59 19-43 (262)
97 TIGR01928 menC_lowGC/arch o-su 56.3 1.3E+02 0.0027 25.6 13.6 150 36-209 132-283 (324)
98 TIGR00190 thiC thiamine biosyn 56.1 1.3E+02 0.0029 26.6 9.3 108 36-162 75-186 (423)
99 PRK15072 bifunctional D-altron 55.9 88 0.0019 27.5 8.6 81 121-206 232-314 (404)
100 PRK07094 biotin synthase; Prov 55.8 66 0.0014 27.1 7.6 120 36-170 71-203 (323)
101 PF00682 HMGL-like: HMGL-like 55.8 46 0.001 26.6 6.4 97 100-203 11-124 (237)
102 CHL00076 chlB photochlorophyll 55.2 1.3E+02 0.0027 27.6 9.7 132 66-209 69-247 (513)
103 COG4464 CapC Capsular polysacc 55.1 1.1E+02 0.0023 24.9 7.9 122 34-157 16-165 (254)
104 PRK06294 coproporphyrinogen II 54.1 1.3E+02 0.0028 26.1 9.2 27 100-127 167-193 (370)
105 PF01904 DUF72: Protein of unk 53.7 93 0.002 25.0 7.8 94 52-148 19-113 (230)
106 PRK04820 rnpA ribonuclease P; 53.7 93 0.002 23.3 7.4 64 78-148 48-114 (145)
107 cd00959 DeoC 2-deoxyribose-5-p 53.7 1.1E+02 0.0023 24.1 9.9 157 35-207 14-181 (203)
108 PRK14017 galactonate dehydrata 53.6 1.5E+02 0.0033 25.8 14.3 153 36-208 124-287 (382)
109 cd01974 Nitrogenase_MoFe_beta 53.2 92 0.002 27.7 8.3 110 57-177 63-192 (435)
110 COG0502 BioB Biotin synthase a 53.1 77 0.0017 27.3 7.4 134 35-186 84-234 (335)
111 COG2987 HutU Urocanate hydrata 52.9 39 0.00084 30.4 5.6 90 78-181 165-268 (561)
112 PRK00499 rnpA ribonuclease P; 52.9 80 0.0017 22.4 7.1 63 78-148 38-104 (114)
113 PRK15108 biotin synthase; Prov 52.6 1.5E+02 0.0033 25.5 10.7 114 35-162 76-201 (345)
114 PRK02227 hypothetical protein; 52.6 1.3E+02 0.0027 24.7 8.2 151 36-199 9-180 (238)
115 KOG1549 Cysteine desulfurase N 52.5 1E+02 0.0022 27.5 8.2 144 40-205 59-216 (428)
116 cd00405 PRAI Phosphoribosylant 52.5 97 0.0021 24.2 7.6 40 121-164 74-113 (203)
117 COG0218 Predicted GTPase [Gene 52.4 1.2E+02 0.0026 24.2 8.4 88 50-148 109-198 (200)
118 COG2089 SpsE Sialic acid synth 52.4 1.5E+02 0.0033 25.5 10.4 119 34-169 86-224 (347)
119 cd03324 rTSbeta_L-fuconate_deh 52.3 1.7E+02 0.0037 26.0 13.4 152 36-207 196-352 (415)
120 PRK07379 coproporphyrinogen II 52.3 1.3E+02 0.0028 26.5 9.0 27 100-127 179-205 (400)
121 PLN02428 lipoic acid synthase 51.5 1.6E+02 0.0035 25.5 10.7 156 35-209 130-323 (349)
122 COG0274 DeoC Deoxyribose-phosp 51.0 1.2E+02 0.0027 24.6 7.8 87 17-120 127-213 (228)
123 PF03102 NeuB: NeuB family; I 51.0 1.4E+02 0.003 24.5 9.4 111 35-162 53-183 (241)
124 cd03318 MLE Muconate Lactonizi 50.5 1.6E+02 0.0036 25.3 13.6 149 38-206 144-296 (365)
125 cd03314 MAL Methylaspartate am 50.1 1.7E+02 0.0037 25.6 9.3 84 123-207 229-319 (369)
126 TIGR00676 fadh2 5,10-methylene 50.0 1.5E+02 0.0032 24.6 12.2 149 38-202 15-185 (272)
127 cd03327 MR_like_2 Mandelate ra 49.4 1.7E+02 0.0036 25.0 14.7 152 36-207 120-280 (341)
128 PRK12928 lipoyl synthase; Prov 49.2 1.6E+02 0.0035 24.7 9.6 75 133-209 185-280 (290)
129 PRK01492 rnpA ribonuclease P; 48.7 99 0.0022 22.2 7.1 61 79-146 47-114 (118)
130 PRK14459 ribosomal RNA large s 48.7 1.1E+02 0.0024 26.8 7.9 89 123-212 241-361 (373)
131 cd02070 corrinoid_protein_B12- 48.6 1.3E+02 0.0028 23.5 10.6 148 36-199 9-161 (201)
132 PRK13011 formyltetrahydrofolat 48.1 1.7E+02 0.0036 24.6 12.5 142 40-209 21-174 (286)
133 TIGR01182 eda Entner-Doudoroff 48.1 1.3E+02 0.0028 24.0 7.6 87 101-205 18-106 (204)
134 cd07943 DRE_TIM_HOA 4-hydroxy- 47.9 1.5E+02 0.0033 24.2 8.8 102 100-204 19-129 (263)
135 COG1448 TyrB Aspartate/tyrosin 47.7 88 0.0019 27.5 6.9 109 65-173 105-237 (396)
136 PRK02910 light-independent pro 47.7 1.8E+02 0.0039 26.6 9.5 100 66-178 69-194 (519)
137 cd01965 Nitrogenase_MoFe_beta_ 47.6 1.3E+02 0.0027 26.7 8.3 109 59-178 61-188 (428)
138 PF13378 MR_MLE_C: Enolase C-t 47.4 22 0.00047 24.8 2.9 51 157-208 3-54 (111)
139 PRK02083 imidazole glycerol ph 47.0 1.6E+02 0.0034 24.0 8.9 86 114-203 163-251 (253)
140 PF00113 Enolase_C: Enolase, C 46.9 1.8E+02 0.0039 24.6 8.9 149 35-206 77-234 (295)
141 TIGR02090 LEU1_arch isopropylm 46.7 1.9E+02 0.0042 25.0 11.1 25 35-59 19-43 (363)
142 COG1121 ZnuC ABC-type Mn/Zn tr 46.4 1.2E+02 0.0027 25.0 7.4 67 101-170 113-208 (254)
143 PLN02590 probable tyrosine dec 45.6 1E+02 0.0022 28.5 7.4 23 188-211 306-328 (539)
144 cd07937 DRE_TIM_PC_TC_5S Pyruv 45.3 1.8E+02 0.0038 24.1 15.1 127 34-170 17-157 (275)
145 COG1104 NifS Cysteine sulfinat 45.2 49 0.0011 29.1 5.1 64 138-204 104-175 (386)
146 COG0145 HyuA N-methylhydantoin 45.2 2.4E+02 0.0053 26.9 10.0 96 34-131 135-243 (674)
147 PRK14466 ribosomal RNA large s 45.1 1.6E+02 0.0034 25.5 8.2 99 79-181 102-214 (345)
148 COG0820 Predicted Fe-S-cluster 45.0 1.6E+02 0.0034 25.6 8.1 84 124-209 216-328 (349)
149 PF05049 IIGP: Interferon-indu 44.9 48 0.001 29.1 5.0 68 65-132 128-202 (376)
150 TIGR00048 radical SAM enzyme, 44.6 1.4E+02 0.0031 25.9 7.9 87 124-211 219-333 (355)
151 cd07944 DRE_TIM_HOA_like 4-hyd 44.3 1.8E+02 0.0039 24.0 14.5 26 34-59 16-41 (266)
152 PF00697 PRAI: N-(5'phosphorib 44.2 20 0.00042 28.2 2.4 67 112-182 14-81 (197)
153 PF05378 Hydant_A_N: Hydantoin 44.2 45 0.00098 25.7 4.4 45 134-199 132-176 (176)
154 PLN02880 tyrosine decarboxylas 44.0 1.4E+02 0.003 27.1 8.1 88 105-211 190-280 (490)
155 PRK03459 rnpA ribonuclease P; 43.7 1.2E+02 0.0027 21.9 7.1 63 78-148 48-114 (122)
156 COG0820 Predicted Fe-S-cluster 43.7 2E+02 0.0043 25.0 8.4 106 79-184 100-222 (349)
157 KOG0059 Lipid exporter ABCA1 a 43.5 1.5E+02 0.0033 29.1 8.7 71 98-170 668-767 (885)
158 PRK09249 coproporphyrinogen II 43.4 1.6E+02 0.0034 26.4 8.3 60 100-161 215-290 (453)
159 PRK06256 biotin synthase; Vali 43.1 2.1E+02 0.0045 24.3 10.1 119 35-168 91-222 (336)
160 PRK04452 acetyl-CoA decarbonyl 43.0 2.2E+02 0.0047 24.5 9.4 93 111-209 83-184 (319)
161 PRK00396 rnpA ribonuclease P; 43.0 1.3E+02 0.0029 22.0 7.0 63 78-148 46-112 (130)
162 PRK06015 keto-hydroxyglutarate 42.9 84 0.0018 25.0 5.7 85 102-204 15-101 (201)
163 cd02930 DCR_FMN 2,4-dienoyl-Co 42.9 2.2E+02 0.0047 24.5 12.0 97 79-178 202-305 (353)
164 COG3877 Uncharacterized protei 42.6 1.1E+02 0.0023 21.7 5.5 43 100-151 69-111 (122)
165 COG2022 ThiG Uncharacterized e 42.5 1.3E+02 0.0028 24.7 6.7 72 98-170 78-150 (262)
166 KOG2264 Exostosin EXT1L [Signa 42.3 85 0.0018 29.2 6.2 59 62-134 630-690 (907)
167 KOG1892 Actin filament-binding 42.2 15 0.00033 36.0 1.6 34 102-135 6-39 (1629)
168 TIGR00262 trpA tryptophan synt 41.9 2E+02 0.0043 23.7 8.9 73 135-209 71-150 (256)
169 PRK13352 thiamine biosynthesis 41.5 1.3E+02 0.0029 26.7 7.2 141 36-203 75-222 (431)
170 PF14871 GHL6: Hypothetical gl 41.4 46 0.00099 24.5 3.8 24 185-209 43-66 (132)
171 cd01297 D-aminoacylase D-amino 41.0 2.5E+02 0.0054 24.6 10.9 122 39-170 168-298 (415)
172 COG2390 DeoR Transcriptional r 41.0 2.3E+02 0.005 24.3 9.7 152 40-209 15-181 (321)
173 PRK01313 rnpA ribonuclease P; 40.9 1.4E+02 0.0031 21.8 7.2 62 78-147 47-113 (129)
174 cd07944 DRE_TIM_HOA_like 4-hyd 40.5 2.1E+02 0.0045 23.6 9.4 80 36-131 107-193 (266)
175 COG0710 AroD 3-dehydroquinate 40.4 2E+02 0.0044 23.4 13.8 125 36-162 12-160 (231)
176 TIGR00737 nifR3_yhdG putative 40.3 2.3E+02 0.0049 23.9 11.4 133 36-179 73-222 (319)
177 PLN02746 hydroxymethylglutaryl 40.3 2E+02 0.0043 25.0 8.0 95 104-204 68-179 (347)
178 PRK08195 4-hyroxy-2-oxovalerat 40.0 2.3E+02 0.0051 24.3 8.5 102 99-205 21-133 (337)
179 PRK01903 rnpA ribonuclease P; 39.9 1.5E+02 0.0033 21.8 7.2 61 79-147 51-128 (133)
180 PRK08508 biotin synthase; Prov 39.7 2.2E+02 0.0048 23.6 9.2 22 35-56 40-61 (279)
181 PRK14461 ribosomal RNA large s 39.6 1.6E+02 0.0035 25.8 7.4 103 79-181 106-235 (371)
182 PF00072 Response_reg: Respons 39.5 91 0.002 20.9 5.1 59 119-180 42-102 (112)
183 PF07555 NAGidase: beta-N-acet 39.4 46 0.00099 28.3 4.0 99 30-157 7-111 (306)
184 PRK01732 rnpA ribonuclease P; 39.4 1.4E+02 0.003 21.3 7.2 64 78-148 45-111 (114)
185 cd02803 OYE_like_FMN_family Ol 39.3 2.3E+02 0.005 23.8 12.6 94 79-178 206-310 (327)
186 cd03328 MR_like_3 Mandelate ra 39.2 2.5E+02 0.0054 24.1 15.7 151 36-207 138-293 (352)
187 cd04742 NPD_FabD 2-Nitropropan 38.8 1E+02 0.0022 27.5 6.2 88 113-208 7-103 (418)
188 PRK04820 rnpA ribonuclease P; 38.3 1.1E+02 0.0024 22.9 5.5 69 18-118 48-117 (145)
189 smart00052 EAL Putative diguan 38.3 1.7E+02 0.0037 22.8 7.1 99 103-206 99-209 (241)
190 PRK12323 DNA polymerase III su 38.1 1.1E+02 0.0024 29.2 6.5 94 100-199 104-200 (700)
191 PRK14463 ribosomal RNA large s 37.9 2.7E+02 0.0058 24.1 9.6 89 79-169 102-203 (349)
192 PTZ00413 lipoate synthase; Pro 37.7 2.9E+02 0.0063 24.5 10.5 158 34-209 176-371 (398)
193 PF00809 Pterin_bind: Pterin b 37.6 2.1E+02 0.0044 22.7 10.0 97 106-207 19-123 (210)
194 COG0076 GadB Glutamate decarbo 37.4 84 0.0018 28.3 5.6 151 35-212 73-249 (460)
195 PRK09240 thiH thiamine biosynt 37.2 2.8E+02 0.0061 24.1 10.9 110 35-160 104-231 (371)
196 cd02810 DHOD_DHPD_FMN Dihydroo 37.2 2.4E+02 0.0051 23.3 10.9 131 36-179 109-272 (289)
197 PF01791 DeoC: DeoC/LacD famil 37.1 2.2E+02 0.0047 22.8 7.8 96 39-148 20-120 (236)
198 COG3215 PilZ Tfp pilus assembl 37.0 1.4E+02 0.0029 21.2 5.3 72 42-115 24-106 (117)
199 cd08620 PI-PLCXDc_like_1 Catal 37.0 1.8E+02 0.0039 24.4 7.1 19 43-61 35-53 (281)
200 TIGR00538 hemN oxygen-independ 36.9 2.5E+02 0.0053 25.1 8.5 60 100-161 215-290 (455)
201 PF13407 Peripla_BP_4: Peripla 36.8 2.1E+02 0.0045 22.5 8.2 63 102-170 13-79 (257)
202 PTZ00081 enolase; Provisional 36.7 3.1E+02 0.0067 24.6 9.0 96 100-205 281-381 (439)
203 PF01118 Semialdhyde_dh: Semia 36.4 49 0.0011 23.5 3.3 27 36-62 75-101 (121)
204 TIGR01290 nifB nitrogenase cof 36.3 3.2E+02 0.0069 24.5 9.9 84 99-185 59-146 (442)
205 PRK12558 glutamyl-tRNA synthet 36.2 1.4E+02 0.003 26.9 6.7 61 98-166 46-106 (445)
206 PRK07003 DNA polymerase III su 36.2 1.5E+02 0.0033 28.8 7.2 93 101-199 100-195 (830)
207 PRK11267 biopolymer transport 35.9 1.2E+02 0.0027 22.2 5.5 54 100-158 81-134 (141)
208 cd03770 SR_TndX_transposase Se 35.9 80 0.0017 23.1 4.5 51 106-156 54-105 (140)
209 cd02801 DUS_like_FMN Dihydrour 35.9 2.2E+02 0.0047 22.4 8.8 134 36-180 65-214 (231)
210 KOG4175 Tryptophan synthase al 35.8 2.3E+02 0.005 22.8 7.5 92 13-117 92-202 (268)
211 cd07937 DRE_TIM_PC_TC_5S Pyruv 35.7 2.5E+02 0.0055 23.2 10.2 16 102-117 177-192 (275)
212 PF00282 Pyridoxal_deC: Pyrido 35.3 2.5E+02 0.0054 24.4 8.1 29 188-217 213-243 (373)
213 PF01081 Aldolase: KDPG and KH 35.3 80 0.0017 25.0 4.5 58 139-205 47-106 (196)
214 cd04731 HisF The cyclase subun 35.2 2.4E+02 0.0051 22.6 11.3 84 112-198 157-243 (243)
215 PRK14340 (dimethylallyl)adenos 35.1 3.3E+02 0.0072 24.3 9.8 122 35-170 178-323 (445)
216 PRK14466 ribosomal RNA large s 35.0 3E+02 0.0065 23.9 8.6 87 123-210 210-324 (345)
217 PRK11024 colicin uptake protei 34.8 1.2E+02 0.0026 22.3 5.3 53 100-157 85-137 (141)
218 smart00148 PLCXc Phospholipase 34.6 1.8E+02 0.0038 21.3 6.1 22 40-61 30-51 (135)
219 PF00825 Ribonuclease_P: Ribon 34.4 1.2E+02 0.0026 21.2 5.1 59 82-147 46-108 (111)
220 COG0647 NagD Predicted sugar p 34.3 2.8E+02 0.006 23.2 7.8 113 37-157 26-155 (269)
221 cd07939 DRE_TIM_NifV Streptomy 34.2 2.6E+02 0.0056 22.8 9.7 80 39-132 111-193 (259)
222 TIGR03820 lys_2_3_AblA lysine- 33.6 3.5E+02 0.0076 24.2 11.5 122 36-170 139-271 (417)
223 PRK05283 deoxyribose-phosphate 33.4 2.8E+02 0.0061 23.0 9.3 103 33-147 21-126 (257)
224 COG2159 Predicted metal-depend 33.0 2.5E+02 0.0054 23.6 7.5 95 113-208 55-165 (293)
225 cd01967 Nitrogenase_MoFe_alpha 32.8 3.3E+02 0.0072 23.7 8.6 104 59-176 67-190 (406)
226 TIGR03799 NOD_PanD_pyr putativ 32.5 4E+02 0.0087 24.5 9.6 22 189-211 285-306 (522)
227 PRK14454 ribosomal RNA large s 32.4 3.3E+02 0.0071 23.5 9.5 106 79-185 100-219 (342)
228 TIGR03217 4OH_2_O_val_ald 4-hy 31.8 2.9E+02 0.0063 23.7 7.8 101 100-203 21-130 (333)
229 PRK10060 RNase II stability mo 31.6 4.3E+02 0.0093 24.8 9.6 114 81-206 492-617 (663)
230 PRK13347 coproporphyrinogen II 31.3 3.8E+02 0.0083 23.9 10.0 60 100-161 216-291 (453)
231 COG0159 TrpA Tryptophan syntha 31.2 3.1E+02 0.0067 22.9 7.5 10 190-199 138-147 (265)
232 PRK02714 O-succinylbenzoate sy 31.1 3.3E+02 0.0071 23.1 14.3 82 121-209 192-274 (320)
233 PRK13111 trpA tryptophan synth 31.1 3E+02 0.0064 22.7 7.5 10 120-129 39-48 (258)
234 PRK14865 rnpA ribonuclease P; 31.1 1.5E+02 0.0032 21.1 5.1 20 100-119 95-114 (116)
235 PLN00191 enolase 31.1 4E+02 0.0087 24.1 14.8 96 100-205 295-393 (457)
236 TIGR00238 KamA family protein. 31.1 3.4E+02 0.0073 23.2 11.3 119 37-170 144-276 (331)
237 PHA02128 hypothetical protein 31.1 1.3E+02 0.0028 21.4 4.5 70 136-206 60-150 (151)
238 PLN02591 tryptophan synthase 30.7 3E+02 0.0066 22.6 8.2 10 190-199 122-131 (250)
239 PRK11865 pyruvate ferredoxin o 30.5 2.8E+02 0.0062 23.5 7.3 144 11-168 132-285 (299)
240 cd00405 PRAI Phosphoribosylant 30.4 1.4E+02 0.003 23.3 5.3 66 114-181 16-82 (203)
241 PRK07945 hypothetical protein; 30.2 3.5E+02 0.0077 23.1 15.0 149 38-204 111-288 (335)
242 TIGR03471 HpnJ hopanoid biosyn 30.2 4E+02 0.0088 23.8 9.8 66 132-199 319-391 (472)
243 PRK15440 L-rhamnonate dehydrat 30.0 1.9E+02 0.0041 25.5 6.5 68 138-206 247-318 (394)
244 TIGR00188 rnpA ribonuclease P 29.9 1.9E+02 0.0042 20.0 6.8 61 78-146 41-104 (105)
245 TIGR02026 BchE magnesium-proto 29.9 4.2E+02 0.0092 24.0 10.2 55 99-156 221-276 (497)
246 PF00388 PI-PLC-X: Phosphatidy 29.8 43 0.00092 24.7 2.1 22 41-62 29-50 (146)
247 cd00945 Aldolase_Class_I Class 29.6 2.5E+02 0.0053 21.1 9.2 98 36-148 11-109 (201)
248 TIGR02814 pfaD_fam PfaD family 29.5 1.9E+02 0.0041 26.1 6.4 63 143-207 37-107 (444)
249 COG1889 NOP1 Fibrillarin-like 29.4 41 0.00088 27.0 2.0 50 147-201 76-126 (231)
250 cd01973 Nitrogenase_VFe_beta_l 29.1 3.9E+02 0.0085 24.0 8.5 115 56-178 63-194 (454)
251 cd03317 NAAAR N-acylamino acid 29.1 3.6E+02 0.0079 23.0 14.9 147 38-209 139-288 (354)
252 TIGR01108 oadA oxaloacetate de 28.9 4.9E+02 0.011 24.4 12.9 113 34-155 17-137 (582)
253 PRK05571 ribose-5-phosphate is 28.8 2.5E+02 0.0055 21.1 10.6 99 100-207 9-108 (148)
254 KOG0077 Vesicle coat complex C 28.7 84 0.0018 24.5 3.5 49 135-183 7-55 (193)
255 COG4992 ArgD Ornithine/acetylo 28.4 1.1E+02 0.0023 27.2 4.5 42 161-203 174-221 (404)
256 PF01890 CbiG_C: Cobalamin syn 28.3 1.9E+02 0.0041 20.8 5.2 63 99-168 11-73 (121)
257 PRK05588 histidinol-phosphatas 28.3 3.2E+02 0.007 22.1 9.6 103 39-155 17-143 (255)
258 PRK08776 cystathionine gamma-s 28.2 4.1E+02 0.009 23.3 10.2 84 122-210 100-185 (405)
259 cd00668 Ile_Leu_Val_MetRS_core 28.2 97 0.0021 26.0 4.3 48 102-153 81-131 (312)
260 TIGR00977 LeuA_rel 2-isopropyl 28.2 4.8E+02 0.01 24.0 10.0 81 40-132 124-209 (526)
261 PRK08446 coproporphyrinogen II 28.1 3.9E+02 0.0083 22.9 9.3 26 101-127 163-188 (350)
262 cd03527 RuBisCO_small Ribulose 27.9 2.2E+02 0.0047 19.9 9.1 81 22-127 3-84 (99)
263 PRK09613 thiH thiamine biosynt 27.8 4.6E+02 0.0099 23.8 8.6 164 36-202 29-234 (469)
264 COG1151 6Fe-6S prismane cluste 27.6 1.4E+02 0.003 27.6 5.2 49 103-154 360-411 (576)
265 PRK14040 oxaloacetate decarbox 27.6 5.2E+02 0.011 24.3 14.2 106 32-151 21-139 (593)
266 PRK06552 keto-hydroxyglutarate 27.6 2.1E+02 0.0045 22.8 5.8 59 137-204 50-113 (213)
267 PLN02522 ATP citrate (pro-S)-l 27.5 1.6E+02 0.0034 27.7 5.7 29 64-92 234-262 (608)
268 PRK01732 rnpA ribonuclease P; 27.5 2.2E+02 0.0047 20.2 5.4 72 15-117 42-113 (114)
269 PRK07764 DNA polymerase III su 27.4 3.5E+02 0.0075 26.6 8.2 95 101-202 101-198 (824)
270 cd00338 Ser_Recombinase Serine 27.3 1.4E+02 0.003 21.2 4.5 51 106-157 51-102 (137)
271 PLN02494 adenosylhomocysteinas 27.1 81 0.0018 28.6 3.7 87 112-209 12-104 (477)
272 PRK10997 yieM hypothetical pro 27.1 1.9E+02 0.0042 26.3 6.1 68 103-170 397-469 (487)
273 PRK10551 phage resistance prot 27.0 3E+02 0.0065 25.2 7.4 114 81-206 349-473 (518)
274 COG1131 CcmA ABC-type multidru 26.9 2E+02 0.0044 24.0 5.9 63 105-170 141-206 (293)
275 cd00466 DHQase_II Dehydroquina 26.9 2.1E+02 0.0045 21.4 5.2 82 98-186 22-105 (140)
276 COG4555 NatA ABC-type Na+ tran 26.9 3.1E+02 0.0067 22.3 6.5 70 99-170 104-202 (245)
277 TIGR00433 bioB biotin syntheta 26.8 3.6E+02 0.0078 22.2 10.4 119 36-169 63-194 (296)
278 COG4626 Phage terminase-like p 26.8 2.9E+02 0.0063 25.6 7.1 42 131-172 408-449 (546)
279 TIGR00742 yjbN tRNA dihydrouri 26.7 4E+02 0.0087 22.7 10.5 133 36-178 65-222 (318)
280 TIGR01428 HAD_type_II 2-haloal 26.7 1.3E+02 0.0027 23.1 4.4 64 105-170 61-128 (198)
281 COG4943 Predicted signal trans 26.6 1.6E+02 0.0034 26.9 5.3 128 66-206 340-477 (524)
282 COG1149 MinD superfamily P-loo 26.6 1E+02 0.0022 25.9 3.9 85 115-211 158-250 (284)
283 TIGR01163 rpe ribulose-phospha 26.6 3E+02 0.0065 21.2 8.9 96 100-199 8-104 (210)
284 PRK13361 molybdenum cofactor b 26.4 4E+02 0.0087 22.6 13.7 128 35-183 45-194 (329)
285 cd03313 enolase Enolase: Enola 26.4 4.5E+02 0.0098 23.2 10.0 96 100-205 261-361 (408)
286 PRK07535 methyltetrahydrofolat 26.2 3.7E+02 0.0081 22.1 9.9 97 101-205 23-121 (261)
287 PRK02399 hypothetical protein; 26.1 2.3E+02 0.005 25.2 6.2 58 107-170 199-270 (406)
288 PF06819 Arc_PepC: Archaeal Pe 26.0 1.9E+02 0.004 20.7 4.6 53 100-152 53-105 (110)
289 PF02679 ComA: (2R)-phospho-3- 26.0 2.2E+02 0.0048 23.4 5.8 93 106-199 24-126 (244)
290 PF00289 CPSase_L_chain: Carba 25.9 2.4E+02 0.0052 19.8 6.4 90 105-208 13-107 (110)
291 PRK14464 ribosomal RNA large s 25.7 3.4E+02 0.0073 23.5 7.1 78 132-211 222-317 (344)
292 PRK00077 eno enolase; Provisio 25.7 4.8E+02 0.01 23.2 10.1 96 100-205 261-361 (425)
293 KOG1196 Predicted NAD-dependen 25.5 77 0.0017 27.1 3.0 97 40-154 212-310 (343)
294 PRK14465 ribosomal RNA large s 25.4 4.5E+02 0.0096 22.8 8.1 87 124-211 216-329 (342)
295 PRK08084 DNA replication initi 25.4 92 0.002 25.1 3.5 45 120-164 97-145 (235)
296 PRK05718 keto-hydroxyglutarate 25.3 3.5E+02 0.0076 21.6 7.6 53 35-89 24-76 (212)
297 smart00857 Resolvase Resolvase 25.3 2.3E+02 0.005 20.4 5.5 51 106-157 51-102 (148)
298 PRK14468 ribosomal RNA large s 25.2 4.4E+02 0.0096 22.7 10.6 92 79-170 92-199 (343)
299 TIGR00689 rpiB_lacA_lacB sugar 25.2 3E+02 0.0064 20.6 10.5 99 99-207 6-105 (144)
300 PF00290 Trp_syntA: Tryptophan 25.2 1.8E+02 0.0038 24.1 5.1 66 135-203 71-143 (259)
301 cd07948 DRE_TIM_HCS Saccharomy 25.2 3.9E+02 0.0084 22.0 9.3 80 38-132 112-195 (262)
302 PRK02842 light-independent pro 25.1 4.7E+02 0.01 23.1 8.2 99 66-176 80-195 (427)
303 PRK14455 ribosomal RNA large s 25.0 3.8E+02 0.0082 23.2 7.4 82 130-212 240-339 (356)
304 PRK13015 3-dehydroquinate dehy 25.0 3E+02 0.0064 20.8 5.8 82 97-185 23-106 (146)
305 cd08556 GDPD Glycerophosphodie 25.0 3E+02 0.0064 20.6 11.1 148 36-208 11-168 (189)
306 cd02932 OYE_YqiM_FMN Old yello 25.0 4.3E+02 0.0093 22.4 12.3 95 78-178 218-319 (336)
307 PRK07535 methyltetrahydrofolat 25.0 3.9E+02 0.0085 22.0 9.6 26 135-160 173-200 (261)
308 cd03326 MR_like_1 Mandelate ra 25.0 4.7E+02 0.01 22.9 13.6 147 36-202 160-313 (385)
309 PLN02540 methylenetetrahydrofo 24.9 5.7E+02 0.012 23.9 12.9 148 38-199 15-195 (565)
310 PF09391 DUF2000: Protein of u 24.9 2E+02 0.0044 21.1 4.9 48 36-83 62-109 (133)
311 KOG0173 20S proteasome, regula 24.9 74 0.0016 26.2 2.7 37 16-52 158-200 (271)
312 cd02069 methionine_synthase_B1 24.8 3.6E+02 0.0078 21.4 10.4 22 36-57 13-34 (213)
313 PRK10508 hypothetical protein; 24.8 2.2E+02 0.0048 24.4 5.8 43 99-146 285-327 (333)
314 PRK09454 ugpQ cytoplasmic glyc 24.7 3.7E+02 0.0081 21.6 14.8 23 36-58 20-42 (249)
315 cd05007 SIS_Etherase N-acetylm 24.7 3.9E+02 0.0085 21.9 11.0 58 110-170 108-165 (257)
316 PRK05628 coproporphyrinogen II 24.6 4.6E+02 0.01 22.6 11.0 28 99-127 171-198 (375)
317 PLN02907 glutamate-tRNA ligase 24.4 6.1E+02 0.013 24.5 9.1 64 97-168 256-319 (722)
318 PRK09776 putative diguanylate 24.4 2.1E+02 0.0044 28.4 6.3 101 100-205 937-1049(1092)
319 PRK14338 (dimethylallyl)adenos 24.4 5.2E+02 0.011 23.2 10.1 123 35-170 184-330 (459)
320 PRK07027 cobalamin biosynthesi 24.3 2E+02 0.0043 20.8 4.7 62 99-167 13-74 (126)
321 PF13653 GDPD_2: Glycerophosph 24.3 75 0.0016 17.0 1.8 18 41-58 10-27 (30)
322 PRK14464 ribosomal RNA large s 24.2 4E+02 0.0086 23.1 7.3 89 77-168 93-193 (344)
323 PF00101 RuBisCO_small: Ribulo 24.2 2.6E+02 0.0055 19.5 7.0 73 34-127 10-83 (99)
324 PF05368 NmrA: NmrA-like famil 24.1 2.3E+02 0.005 22.2 5.6 84 119-211 21-105 (233)
325 cd01971 Nitrogenase_VnfN_like 24.1 5E+02 0.011 22.9 8.3 105 59-178 66-192 (427)
326 cd07939 DRE_TIM_NifV Streptomy 24.0 4E+02 0.0086 21.7 13.0 39 35-74 17-56 (259)
327 TIGR01862 N2-ase-Ialpha nitrog 24.0 3.1E+02 0.0067 24.5 6.8 103 59-175 97-220 (443)
328 cd00885 cinA Competence-damage 24.0 2.2E+02 0.0048 21.7 5.2 83 40-148 21-104 (170)
329 PRK00507 deoxyribose-phosphate 24.0 3.8E+02 0.0083 21.5 9.7 134 34-181 18-158 (221)
330 cd08590 PI-PLCc_Rv2075c_like C 24.0 3.6E+02 0.0078 22.3 6.8 18 43-60 46-63 (267)
331 PRK05339 PEP synthetase regula 23.9 3.1E+02 0.0067 22.9 6.3 72 38-124 16-90 (269)
332 PRK14040 oxaloacetate decarbox 23.9 3.3E+02 0.0072 25.5 7.2 95 101-199 25-137 (593)
333 cd01948 EAL EAL domain. This d 23.8 3.5E+02 0.0075 21.0 7.7 101 102-207 97-209 (240)
334 PF10007 DUF2250: Uncharacteri 23.8 99 0.0022 21.3 2.9 52 104-158 7-58 (92)
335 PF01207 Dus: Dihydrouridine s 23.8 1.9E+02 0.0042 24.4 5.3 133 36-178 64-212 (309)
336 PF03472 Autoind_bind: Autoind 23.7 2.7E+02 0.0059 19.7 7.3 24 101-124 1-24 (149)
337 PF12728 HTH_17: Helix-turn-he 23.7 1.6E+02 0.0035 17.0 3.7 30 140-169 16-48 (51)
338 TIGR02660 nifV_homocitr homoci 23.7 4.8E+02 0.01 22.5 9.5 92 38-143 113-208 (365)
339 COG0419 SbcC ATPase involved i 23.5 2E+02 0.0042 28.4 5.9 61 105-167 824-889 (908)
340 PRK03995 hypothetical protein; 23.4 4.3E+02 0.0092 22.0 7.1 16 104-119 248-263 (267)
341 PRK04132 replication factor C 23.3 4.3E+02 0.0093 26.0 7.9 93 101-199 609-706 (846)
342 PF08727 P3A: Poliovirus 3A pr 23.2 45 0.00098 20.8 1.0 14 189-203 30-43 (57)
343 COG0042 tRNA-dihydrouridine sy 23.2 4.7E+02 0.01 22.3 9.6 132 36-178 77-227 (323)
344 cd08606 GDPD_YPL110cp_fungi Gl 23.0 4.3E+02 0.0093 21.7 12.6 29 142-170 156-184 (286)
345 COG1126 GlnQ ABC-type polar am 22.9 3.8E+02 0.0083 21.9 6.4 70 99-170 107-205 (240)
346 TIGR00035 asp_race aspartate r 22.8 3.9E+02 0.0085 21.2 8.0 67 101-168 15-94 (229)
347 smart00633 Glyco_10 Glycosyl h 22.7 3.6E+02 0.0078 21.8 6.6 74 136-209 136-227 (254)
348 PLN02321 2-isopropylmalate syn 22.6 6.7E+02 0.015 23.8 10.3 82 40-131 212-297 (632)
349 PRK07328 histidinol-phosphatas 22.5 4.3E+02 0.0094 21.6 15.5 104 40-155 20-159 (269)
350 PLN03233 putative glutamate-tR 22.4 4.3E+02 0.0094 24.4 7.4 62 98-167 55-116 (523)
351 TIGR01501 MthylAspMutase methy 22.2 3.3E+02 0.0071 20.1 14.2 101 38-155 15-116 (134)
352 PLN02775 Probable dihydrodipic 22.1 4.8E+02 0.01 22.0 8.0 68 111-182 70-138 (286)
353 PRK14463 ribosomal RNA large s 22.1 3.4E+02 0.0074 23.5 6.5 87 124-211 211-325 (349)
354 PF10171 DUF2366: Uncharacteri 21.9 2.1E+02 0.0045 22.2 4.6 51 101-158 65-117 (173)
355 PRK00038 rnpA ribonuclease P; 21.9 3.2E+02 0.0069 19.8 7.6 63 78-147 50-119 (123)
356 PRK09536 btuD corrinoid ABC tr 21.8 2E+02 0.0044 25.4 5.2 72 138-210 279-350 (402)
357 PF14615 Rsa3: Ribosome-assemb 21.8 68 0.0015 19.1 1.5 19 38-56 29-47 (47)
358 TIGR03849 arch_ComA phosphosul 21.7 2.1E+02 0.0046 23.4 4.9 97 107-205 12-118 (237)
359 TIGR02351 thiH thiazole biosyn 21.7 5.3E+02 0.011 22.3 10.5 113 36-164 104-234 (366)
360 COG3287 Uncharacterized conser 21.7 1.7E+02 0.0037 25.7 4.5 55 102-158 12-66 (379)
361 TIGR03699 mena_SCO4550 menaqui 21.7 5E+02 0.011 22.0 8.9 120 35-166 72-214 (340)
362 TIGR00973 leuA_bact 2-isopropy 21.6 6.2E+02 0.013 23.1 13.0 25 35-59 20-44 (494)
363 PF01053 Cys_Met_Meta_PP: Cys/ 21.6 3.7E+02 0.0081 23.6 6.7 76 136-211 105-182 (386)
364 cd01966 Nitrogenase_NifN_1 Nit 21.6 3.2E+02 0.0069 24.2 6.4 108 59-177 61-189 (417)
365 COG0731 Fe-S oxidoreductases [ 21.5 2.2E+02 0.0048 24.1 5.0 52 127-178 149-209 (296)
366 PF08013 Tagatose_6_P_K: Tagat 21.4 1.2E+02 0.0026 27.0 3.5 105 13-118 78-212 (424)
367 TIGR00221 nagA N-acetylglucosa 21.4 5.5E+02 0.012 22.4 10.2 33 138-170 179-211 (380)
368 cd00814 MetRS_core catalytic c 21.4 1.5E+02 0.0034 25.0 4.2 47 102-151 68-114 (319)
369 PF11821 DUF3341: Protein of u 21.4 1.7E+02 0.0037 22.7 4.1 36 36-71 11-46 (173)
370 PRK07994 DNA polymerase III su 21.2 4.3E+02 0.0093 25.1 7.3 93 101-199 100-195 (647)
371 PRK12570 N-acetylmuramic acid- 21.1 5E+02 0.011 21.8 9.9 57 110-169 117-173 (296)
372 PF08282 Hydrolase_3: haloacid 21.1 2.6E+02 0.0055 21.7 5.3 71 135-208 17-103 (254)
373 PRK00133 metG methionyl-tRNA s 21.1 3.2E+02 0.007 25.9 6.7 47 103-152 71-117 (673)
374 PF09639 YjcQ: YjcQ protein; 21.0 70 0.0015 21.6 1.7 24 136-159 25-48 (88)
375 cd00945 Aldolase_Class_I Class 20.7 2E+02 0.0043 21.7 4.5 26 37-62 64-89 (201)
376 cd07940 DRE_TIM_IPMS 2-isoprop 20.7 4.7E+02 0.01 21.3 9.1 95 38-143 114-212 (268)
377 PTZ00402 glutamyl-tRNA synthet 20.7 7.2E+02 0.016 23.4 9.4 63 98-168 96-159 (601)
378 cd00248 Mth938-like Mth938-lik 20.5 2.6E+02 0.0056 19.6 4.6 50 159-209 39-88 (109)
379 PRK00048 dihydrodipicolinate r 20.4 4.7E+02 0.01 21.3 9.7 99 36-148 69-167 (257)
380 COG2412 Uncharacterized conser 20.4 2.4E+02 0.0051 19.8 4.1 41 66-113 21-61 (101)
381 PLN02229 alpha-galactosidase 20.3 1.2E+02 0.0026 27.1 3.4 42 15-59 60-106 (427)
382 PRK11840 bifunctional sulfur c 20.3 5.6E+02 0.012 22.1 9.7 74 98-172 145-219 (326)
383 TIGR02080 O_succ_thio_ly O-suc 20.3 5.7E+02 0.012 22.2 10.4 83 122-209 91-175 (382)
384 PRK11893 methionyl-tRNA synthe 20.2 1.7E+02 0.0036 26.5 4.4 48 102-152 69-116 (511)
385 cd07940 DRE_TIM_IPMS 2-isoprop 20.2 4.9E+02 0.011 21.3 12.5 26 35-60 17-42 (268)
386 COG0313 Predicted methyltransf 20.2 82 0.0018 26.3 2.2 68 110-204 43-110 (275)
387 PRK14332 (dimethylallyl)adenos 20.2 6.3E+02 0.014 22.6 8.2 121 35-170 183-326 (449)
388 TIGR00677 fadh2_euk methylenet 20.2 5.1E+02 0.011 21.5 12.2 147 38-199 16-187 (281)
389 TIGR02932 vnfK_nitrog V-contai 20.1 6.4E+02 0.014 22.7 8.5 112 56-178 66-198 (457)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=8.2e-54 Score=361.55 Aligned_cols=211 Identities=41% Similarity=0.598 Sum_probs=192.3
Q ss_pred ccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCC-CCCEE
Q 027845 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM-RERVE 83 (218)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~ 83 (218)
|++|++|++|++||+||||||.+|+.+ ...++.++.++|++|+++||||||||+.||.|.||+++|++|++.+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~-~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDT-DDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCC-CchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 789999999999999999999998752 2334556888999999999999999999999999999999999955 89999
Q ss_pred EEeccCCCCCC-C-C-CCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCccc
Q 027845 84 LATKFGISFAD-G-G-KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (218)
Q Consensus 84 I~tK~~~~~~~-~-~-~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 160 (218)
|+||++....+ + . ..+.++++|+++++.||+||||||||+|++||||..++.++++.+|++|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999876532 2 2 2678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhHH-hhhhhc
Q 027845 161 AATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKS-YLSVLM 217 (218)
Q Consensus 161 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g-~L~~~~ 217 (218)
++++.++++. .+++++|.+||+++|+.+.+++++|+++| +++++||||++ +|+.-+
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~g-i~~~~~spla~G~Ltgk~ 217 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEG-IGLLAYSPLASGLLTGKY 217 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcC-CeEEEecCccccccCCCc
Confidence 9999999999 69999999999999987778999999999 99999999976 888643
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=7.1e-52 Score=345.21 Aligned_cols=211 Identities=41% Similarity=0.630 Sum_probs=193.3
Q ss_pred ccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC--CCCCCE
Q 027845 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERV 82 (218)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~ 82 (218)
|+++++|++|++||++|||||.+.. |+...++++|++++++|+++|+||||||+.||+|.||.++|+++++ .+|+++
T Consensus 12 ~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~v 90 (336)
T KOG1575|consen 12 MLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKV 90 (336)
T ss_pred ceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcE
Confidence 8999999999999999999985544 4444788999999999999999999999999999999999999999 679999
Q ss_pred EEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHH
Q 027845 83 ELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAA 162 (218)
Q Consensus 83 ~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 162 (218)
+|+||++...+....+..+...+...++.|+++||++|||+|++||+|+..++++++++|.+++++|+|++||+|+++++
T Consensus 91 viaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~ 170 (336)
T KOG1575|consen 91 VIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSAE 170 (336)
T ss_pred EEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCHH
Confidence 99999987652224567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC--eeEEcccCCcccccch-hchHHHHHhcCCCeeeEehhhHH-hhhhhc
Q 027845 163 TIRRAHAVHP--ITAVQLEWSLWSRDVE-AEIVPTCSACRSSKLKIWSIIKS-YLSVLM 217 (218)
Q Consensus 163 ~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~l~~~~~~~g~i~i~~~spl~g-~L~~~~ 217 (218)
+++++++..+ |.++|++||+++|..+ .++++.|+++| |++++||||++ +|+.-+
T Consensus 171 ~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~G-i~li~ysPL~~G~Ltgk~ 228 (336)
T KOG1575|consen 171 EIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELG-IGLIAWSPLGRGLLTGKY 228 (336)
T ss_pred HHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcC-cceEEecccccceeccCc
Confidence 9999999976 9999999999999954 47999999999 99999999977 988654
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.1e-50 Score=330.45 Aligned_cols=185 Identities=31% Similarity=0.421 Sum_probs=169.4
Q ss_pred ccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC--CCCCCE
Q 027845 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERV 82 (218)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~ 82 (218)
+++.++ ++|.+||.+|||||++++ .+.+.+++.+|++.|+|+||||..|| ||+.+|+++++ ++|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 456777 788889999999999843 22389999999999999999999999 99999999999 789999
Q ss_pred EEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC--CCHHHHHHHHHHHHHhCCcCEEecCccc
Q 027845 83 ELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEAC 160 (218)
Q Consensus 83 ~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 160 (218)
||+||++... .+++.+.+++++||++||+||+|||++|||.+. ..+.|+|++|++++++|+||+||||||+
T Consensus 72 FittKvw~~~-------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~ 144 (280)
T COG0656 72 FITTKVWPSD-------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFG 144 (280)
T ss_pred EEEeecCCcc-------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCC
Confidence 9999999765 678999999999999999999999999999763 3378999999999999999999999999
Q ss_pred HHHHHHHhcC--CCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhH
Q 027845 161 AATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIK 210 (218)
Q Consensus 161 ~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~ 210 (218)
...|+++++. .+|++||++|||+.++. +++++|+++| |.+.+||||+
T Consensus 145 ~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~g-I~v~AysPL~ 193 (280)
T COG0656 145 VEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHG-IAVEAYSPLA 193 (280)
T ss_pred HHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcC-CEEEEECCcc
Confidence 9999999887 56999999999999995 5999999999 9999999997
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=6.4e-49 Score=336.56 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=181.1
Q ss_pred CccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCC--CcHHHHHHHHhcC---CC
Q 027845 4 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKG---GM 78 (218)
Q Consensus 4 ~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~--g~se~~lg~~l~~---~~ 78 (218)
.|++|+||++|++||+||||||+. +|...+.+++.++++.|++.|||+||||+.||+ |.+|+.+|++|++ .+
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~ 88 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY 88 (346)
T ss_pred CcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCC
Confidence 499999999999999999999973 333345677899999999999999999999995 8999999999986 25
Q ss_pred CCCEEEEeccCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC
Q 027845 79 RERVELATKFGISFADG-GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~~-~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs 157 (218)
|++++|+||++....++ .....+++.+++++++||++||+||||+|++|||++..+++++|++|++|+++|+|++||+|
T Consensus 89 Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvS 168 (346)
T PRK09912 89 RDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGIS 168 (346)
T ss_pred CCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEec
Confidence 99999999987531111 11346799999999999999999999999999999888999999999999999999999999
Q ss_pred cccHHHHHHHhcC-----CCeeEEcccCCcccccch-hchHHHHHhcCCCeeeEehhhHH-hhhh
Q 027845 158 EACAATIRRAHAV-----HPITAVQLEWSLWSRDVE-AEIVPTCSACRSSKLKIWSIIKS-YLSV 215 (218)
Q Consensus 158 ~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g~i~i~~~spl~g-~L~~ 215 (218)
||++++++++.+. .+++++|++||++++..+ .+++++|+++| +++++||||++ +|+.
T Consensus 169 n~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~g-I~via~spl~~G~Lt~ 232 (346)
T PRK09912 169 SYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNG-VGCIAFTPLAQGLLTG 232 (346)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcC-ceEEEehhhcCccccC
Confidence 9999988866542 478999999999998754 47999999999 99999999976 8764
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5.3e-49 Score=333.57 Aligned_cols=205 Identities=25% Similarity=0.355 Sum_probs=179.6
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC--CCCCCEEE
Q 027845 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVEL 84 (218)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I 84 (218)
||+||++|++||+||||||++ +|...+++++.++++.|+++|||+||||+.||.|.||+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 588999999999999999974 2334577889999999999999999999999999999999999985 36999999
Q ss_pred EeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHH
Q 027845 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (218)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 164 (218)
+||+++........+.+++.++++++.||++||+||||+|++|||++..+++++|++|++|+++|+||+||+|||+++++
T Consensus 78 aTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l 157 (317)
T TIGR01293 78 TTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEI 157 (317)
T ss_pred EeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Confidence 99986421101113468999999999999999999999999999998889999999999999999999999999999998
Q ss_pred HHHhcC------CCeeEEcccCCcccccc-hhchHHHHHhcCCCeeeEehhhHH-hhhh
Q 027845 165 RRAHAV------HPITAVQLEWSLWSRDV-EAEIVPTCSACRSSKLKIWSIIKS-YLSV 215 (218)
Q Consensus 165 ~~~~~~------~~~~~~q~~~n~~~~~~-~~~l~~~~~~~g~i~i~~~spl~g-~L~~ 215 (218)
+++... .+|+++|++||+++++. ++.++++|+++| +++++||||++ +|+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~g-i~v~a~spl~~G~Ltg 215 (317)
T TIGR01293 158 MEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIG-VGAMTWSPLACGLVSG 215 (317)
T ss_pred HHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcC-CeEEEeccccccccCC
Confidence 876433 57899999999999874 568999999999 99999999975 8874
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.4e-47 Score=328.53 Aligned_cols=206 Identities=28% Similarity=0.378 Sum_probs=178.2
Q ss_pred ccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcC-------CCcHHHHHHHHhcC-
Q 027845 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYG-------PYTNEILVGKALKG- 76 (218)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-------~g~se~~lg~~l~~- 76 (218)
|++++||++|++||+||||||++|+ ..+++++.++++.|++.|||+||||+.|| .|.||..+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999864 34677899999999999999999999998 48899999999985
Q ss_pred CCCCCEEEEeccCCCCC-CC----CCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCC-----------------CCC
Q 027845 77 GMRERVELATKFGISFA-DG----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----------------KIP 134 (218)
Q Consensus 77 ~~r~~~~I~tK~~~~~~-~~----~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-----------------~~~ 134 (218)
.+|++++|+||++.... .+ ...+.+++.++++++.||++||++|||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 35999999999863210 00 012468999999999999999999999999999965 246
Q ss_pred HHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC------CCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehh
Q 027845 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSI 208 (218)
Q Consensus 135 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~sp 208 (218)
++++|++|++|+++|+|++||+|||+.+++.+++.. ..+.++|++||++++..+.+++++|+++| |++++|||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~g-i~via~sp 235 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEG-VELLAYSC 235 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcC-CeEEEecc
Confidence 789999999999999999999999999988776532 35889999999999887668999999999 99999999
Q ss_pred hHH-hhhh
Q 027845 209 IKS-YLSV 215 (218)
Q Consensus 209 l~g-~L~~ 215 (218)
|++ +|+.
T Consensus 236 L~~G~Ltg 243 (346)
T PRK10625 236 LAFGTLTG 243 (346)
T ss_pred ccCeeccC
Confidence 975 8764
No 7
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.8e-48 Score=318.34 Aligned_cols=188 Identities=27% Similarity=0.395 Sum_probs=173.0
Q ss_pred CCCCccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC----
Q 027845 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG---- 76 (218)
Q Consensus 1 m~~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~---- 76 (218)
|+.+. +.+| ++|.+||.||||||+. ++.++.++++.|++.|+||||||..|+ +|+.+|+++++
T Consensus 1 M~~~~-~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~ 67 (300)
T KOG1577|consen 1 MSSKT-TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAE 67 (300)
T ss_pred CCccc-eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhh
Confidence 66665 7889 9999999999999974 567799999999999999999999999 99999999995
Q ss_pred --CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC----------------CCHHHH
Q 027845 77 --GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----------------IPIEVT 138 (218)
Q Consensus 77 --~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~----------------~~~~~~ 138 (218)
++|+++||+||+|... ..++.++.++++||++||+||+|||++|||-.. .+..++
T Consensus 68 ~~v~RediFiTSKlw~~~-------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~t 140 (300)
T KOG1577|consen 68 GGVKREDIFITSKLWPTD-------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIET 140 (300)
T ss_pred CCcchhhheeeeccCccc-------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHH
Confidence 5899999999999764 679999999999999999999999999999543 346789
Q ss_pred HHHHHHHHHhCCcCEEecCcccHHHHHHHhcC--CCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhHH
Q 027845 139 IGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 139 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
|++|+++++.|++|+||||||+..+++++++. .+|.++|+++||+-++ ++++++|+++| |.+.|||||++
T Consensus 141 W~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~-I~v~AYSpLg~ 212 (300)
T KOG1577|consen 141 WKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKG-IVVTAYSPLGS 212 (300)
T ss_pred HHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCC-cEEEEecCCCC
Confidence 99999999999999999999999999999988 7899999999999998 68999999999 99999999975
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3e-47 Score=317.97 Aligned_cols=201 Identities=38% Similarity=0.546 Sum_probs=183.1
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCC-CCCEEEE
Q 027845 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM-RERVELA 85 (218)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~I~ 85 (218)
+++||++|++||++|||||.++..+ .+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999986544 46788999999999999999999999999999999999999965 9999999
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCC-HHHHHHHHHHHHHhCCcCEEecCcccHHHH
Q 027845 86 TKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (218)
Q Consensus 86 tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 164 (218)
||++..... ..+.+++.+++++++||++||++|||+|++|+|+.... ..++|++|++++++|+||+||+|||+++.+
T Consensus 78 tK~~~~~~~--~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 155 (285)
T cd06660 78 TKVGPRPGD--GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQL 155 (285)
T ss_pred eeecCCCCC--CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHH
Confidence 999865421 13468999999999999999999999999999988766 889999999999999999999999999999
Q ss_pred HHHhcC--CCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhHH-hh
Q 027845 165 RRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKS-YL 213 (218)
Q Consensus 165 ~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g-~L 213 (218)
.++++. .+|+++|++||++++..+.+++++|+++| +++++|+||++ .|
T Consensus 156 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g-i~v~~~~~l~~g~l 206 (285)
T cd06660 156 EEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHG-IGVIAYSPLAGGLL 206 (285)
T ss_pred HHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcC-cEEEEeccccCcee
Confidence 999988 89999999999999997557999999999 99999999976 54
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.1e-47 Score=320.56 Aligned_cols=203 Identities=29% Similarity=0.385 Sum_probs=175.7
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC--CCCCCEEE
Q 027845 7 RIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVEL 84 (218)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I 84 (218)
||+||++|++||.||||||++|+.|+. .+++++.+++++|++.|||+||||+.||.|.+|..+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999876653 467789999999999999999999999999999999999987 46999999
Q ss_pred EeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC---CCHHHHHHHHHHHHHhCCcCEEecCcccH
Q 027845 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK---IPIEVTIGELKKLVEEGKIKYIGLSEACA 161 (218)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 161 (218)
+||++.... ..+.+++.+++++++||++||+||||+|++|+|+.. .+++++|++|++|+++|+||+||+|||++
T Consensus 80 ~TK~~~~~~---~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 156 (314)
T PLN02587 80 STKCGRYGE---GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPL 156 (314)
T ss_pred EeccccCCC---CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCH
Confidence 999984321 124689999999999999999999999999999743 34678999999999999999999999999
Q ss_pred HHHHHHhcC-----CCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhHH-hhhh
Q 027845 162 ATIRRAHAV-----HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKS-YLSV 215 (218)
Q Consensus 162 ~~l~~~~~~-----~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g-~L~~ 215 (218)
++++.+... ..+..+|+.||+.++.. .+++++|+++| +++++|+||++ +|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~g-i~v~a~spl~~G~L~~ 214 (314)
T PLN02587 157 AIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKG-VGVISASPLAMGLLTE 214 (314)
T ss_pred HHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcC-ceEEEechhhccccCC
Confidence 988777653 23445688999887654 48999999999 99999999976 7763
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-46 Score=313.57 Aligned_cols=208 Identities=23% Similarity=0.358 Sum_probs=179.1
Q ss_pred CCCCccceecCCCCcccCcceecccccCC--CCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCC
Q 027845 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSC--LYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM 78 (218)
Q Consensus 1 m~~~m~~~~lg~~g~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~ 78 (218)
|+.-|...++.-+|++||+||||||++|+ .||...+++++.++++.|++.|||+||||+.||+|.+|+.+|++++. .
T Consensus 1 ~~~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~ 79 (290)
T PRK10376 1 MSTIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-Y 79 (290)
T ss_pred CcccccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-C
Confidence 55556554444449999999999999975 36655677889999999999999999999999999999999999965 5
Q ss_pred CCCEEEEeccCCCCCCC--CCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCC-----CCCHHHHHHHHHHHHHhCCc
Q 027845 79 RERVELATKFGISFADG--GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEEGKI 151 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~~--~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-----~~~~~~~~~~l~~l~~~G~i 151 (218)
|++++|+||++...... .....+++.+++++++||++||++|||+|++|+++. ..+++++|++|++|+++|+|
T Consensus 80 R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gki 159 (290)
T PRK10376 80 PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLV 159 (290)
T ss_pred CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCce
Confidence 99999999987532111 123578999999999999999999999999988521 23578999999999999999
Q ss_pred CEEecCcccHHHHHHHhcCCCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhHH
Q 027845 152 KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 152 r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
|+||+|||++++++++.+..+++++|++||++++.. .+++++|+++| |++++|+||+|
T Consensus 160 r~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~g-i~v~a~~pL~g 217 (290)
T PRK10376 160 RHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDG-IAYVPFFPLGG 217 (290)
T ss_pred eEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcC-CEEEEeecCCC
Confidence 999999999999999998889999999999999764 47999999999 99999999976
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.6e-44 Score=301.23 Aligned_cols=190 Identities=28% Similarity=0.385 Sum_probs=165.7
Q ss_pred cceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC--CCCCCEEEEeccCCCCCCCC
Q 027845 19 AQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVELATKFGISFADGG 96 (218)
Q Consensus 19 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I~tK~~~~~~~~~ 96 (218)
+||||||++++. ..+++++.++++.|++.|||+||||+.|++|.+|+.+|++|++ .+|++++|+||+.... ..
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~--~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDG--KP 75 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSS--ST
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccc--cc
Confidence 589999999653 5688999999999999999999999999999999999999998 7899999999992111 13
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCC-HHHHHHHHHHHHHhCCcCEEecCcccHHHHHHH--hcCCCe
Q 027845 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGLSEACAATIRRA--HAVHPI 173 (218)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~~~ 173 (218)
....+++.+++++++||++||++|+|+|++|+|+.... ..++|++|++|+++|+||+||||||+++.++.+ ....+|
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 155 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPP 155 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-E
T ss_pred cccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccc
Confidence 35689999999999999999999999999999999988 899999999999999999999999999999999 555889
Q ss_pred eEEcccCCcccccchhchHHHHHhcCCCeeeEehhhHH-hhh
Q 027845 174 TAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKS-YLS 214 (218)
Q Consensus 174 ~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g-~L~ 214 (218)
+++|++||++++...++++++|+++| |++++|+||++ +|+
T Consensus 156 ~~~q~~~n~~~~~~~~~l~~~~~~~g-i~v~a~~~l~~G~l~ 196 (283)
T PF00248_consen 156 DVVQINYNLLNRREEEGLLEFCREHG-IGVIAYSPLAGGLLT 196 (283)
T ss_dssp SEEEEE-BTTBHBGGHHHHHHHHHTT--EEEEESTTGGGCGG
T ss_pred cccccccccccccccccccccccccc-cccccccccccCccc
Confidence 99999999997777779999999999 99999999976 665
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.6e-44 Score=301.25 Aligned_cols=188 Identities=22% Similarity=0.282 Sum_probs=165.2
Q ss_pred CcccCcceecccccCCC-------CCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEe
Q 027845 14 GLEVSAQGLGCMAMSCL-------YGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELAT 86 (218)
Q Consensus 14 g~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~t 86 (218)
+++||+||||||++|+. |+ ..+++++.++++.|++.||||||||+.|| .||+.+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~-~~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRG-RTPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCC-CCCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999864 33 45788899999999999999999999997 7999999999763345788888
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC-CCH-HHHHHHHHHHHHhCCcCEEecCcccHHHH
Q 027845 87 KFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPI-EVTIGELKKLVEEGKIKYIGLSEACAATI 164 (218)
Q Consensus 87 K~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~-~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 164 (218)
|.. +.+++.+++++++||++||+||||+|++|+|++. .+. +++|++|++|+++|+||+||+|||+++++
T Consensus 79 k~~---------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~ 149 (292)
T PRK14863 79 VRA---------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDP 149 (292)
T ss_pred ccc---------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHH
Confidence 842 1458999999999999999999999999999763 333 57899999999999999999999999999
Q ss_pred HHHhcCCCeeEEcccCCcccccch-hchHHHHHhcCCCeeeEehhhHH-hhh
Q 027845 165 RRAHAVHPITAVQLEWSLWSRDVE-AEIVPTCSACRSSKLKIWSIIKS-YLS 214 (218)
Q Consensus 165 ~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g~i~i~~~spl~g-~L~ 214 (218)
.++....+|+++|++||++++..+ .+++++|+++| +++++|+||++ +|.
T Consensus 150 ~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~g-i~v~a~spl~~G~L~ 200 (292)
T PRK14863 150 VGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMG-VEVHLRSIFLNGLLF 200 (292)
T ss_pred HHHHhcCCCCEEEecCCcccccccccchHHHHHhCC-CEEEEechhhCcccc
Confidence 988888899999999999999754 47999999999 99999999966 664
No 13
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4.9e-44 Score=296.38 Aligned_cols=175 Identities=23% Similarity=0.336 Sum_probs=158.6
Q ss_pred ccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC--CCCCCEEEEeccCCCCC
Q 027845 16 EVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERVELATKFGISFA 93 (218)
Q Consensus 16 ~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~~I~tK~~~~~~ 93 (218)
+||.+|||||+++ .+++.++++.|++.|||+||||+.|| +|+.+|++|++ .+|++++|+||++..
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~-- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID-- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--
Confidence 6899999999873 35699999999999999999999999 69999999985 469999999998643
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC--CCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC-
Q 027845 94 DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV- 170 (218)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~- 170 (218)
..+++.+++++++||++||+||+|+|++|||++. .+.+++|++|++++++|+||+||+|||++++++++++.
T Consensus 69 -----~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~ 143 (267)
T PRK11172 69 -----NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAV 143 (267)
T ss_pred -----CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhc
Confidence 2678999999999999999999999999999763 57789999999999999999999999999999988765
Q ss_pred --CCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhHH
Q 027845 171 --HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 171 --~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
.+++++|++||++.+. .+++++|+++| |++++||||++
T Consensus 144 ~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~g-i~v~a~spl~~ 183 (267)
T PRK11172 144 GAENIATNQIELSPYLQN--RKVVAFAKEHG-IHVTSYMTLAY 183 (267)
T ss_pred CCCCCeEEeeecCCCCCc--HHHHHHHHHCC-CEEEEECCCCC
Confidence 3689999999999986 68999999999 99999999965
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.8e-44 Score=285.42 Aligned_cols=206 Identities=29% Similarity=0.444 Sum_probs=187.3
Q ss_pred ccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC--CCCCCE
Q 027845 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GMRERV 82 (218)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~r~~~ 82 (218)
|++.+++..|++.|++.+|+|++.. | ..+.+++...++.|++.||++||-|+.||+|.+|+++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~--~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-W--NMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-c--cCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 6788999999999999999999954 3 3455789999999999999999999999999999999999988 459999
Q ss_pred EEEeccCCCCCCC-----CCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC
Q 027845 83 ELATKFGISFADG-----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (218)
Q Consensus 83 ~I~tK~~~~~~~~-----~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs 157 (218)
.|+||++...+.. ...+.|.++|.+++++||++|+|||+|+++||+||+-.+.+|+.+|+..|.+.||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999765432 45688999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhcC--CCeeEEcccCCcccccc-hhchHHHHHhcCCCeeeEehhhHH--hhh
Q 027845 158 EACAATIRRAHAV--HPITAVQLEWSLWSRDV-EAEIVPTCSACRSSKLKIWSIIKS--YLS 214 (218)
Q Consensus 158 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~-~~~l~~~~~~~g~i~i~~~spl~g--~L~ 214 (218)
||+|.+++-+.+. .++++||++.|++.... .++.+++|+.+. +.+++||||+| +++
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~-v~pmaWSpl~gG~~F~ 218 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLR-VRPMAWSPLGGGGLFL 218 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcC-CCcccccccCCCcccc
Confidence 9999999998887 46899999999999874 468999999999 99999999966 555
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.3e-42 Score=288.91 Aligned_cols=186 Identities=30% Similarity=0.359 Sum_probs=165.0
Q ss_pred CCCCccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC--CC
Q 027845 1 MAGTVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG--GM 78 (218)
Q Consensus 1 m~~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~--~~ 78 (218)
|+... +.+| ++|+.||.||||||++ +++++.+++++|++.|+|+||||+.|| +|+.+|++|++ .+
T Consensus 1 ~~~~~-~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~ 67 (275)
T PRK11565 1 MANPT-VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVA 67 (275)
T ss_pred CCCCc-eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCC
Confidence 44443 3567 8999999999999976 357799999999999999999999998 79999999986 36
Q ss_pred CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCC-CHHHHHHHHHHHHHhCCcCEEecC
Q 027845 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLS 157 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~-~~~~~~~~l~~l~~~G~ir~iGvs 157 (218)
|++++|+||++. .+++.+++++++||++||++|+|+|++|+|++.. +..++|++|++|+++|+||+||+|
T Consensus 68 R~~~~i~tK~~~---------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 68 REELFITTKLWN---------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred HHHEEEEEEecC---------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeec
Confidence 999999999863 2478999999999999999999999999998754 478999999999999999999999
Q ss_pred cccHHHHHHHhcC--CCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhHH
Q 027845 158 EACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 158 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
||++++++++++. .+|+++|++||++.+. .+++++|+++| +++++||||++
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~-i~~~a~spl~~ 191 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHK-IQTESWSPLAQ 191 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCC-CEEEEEccCCC
Confidence 9999999998755 4689999999999986 58999999999 99999999963
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=8.9e-40 Score=271.49 Aligned_cols=202 Identities=28% Similarity=0.308 Sum_probs=182.4
Q ss_pred ccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEE
Q 027845 5 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVEL 84 (218)
Q Consensus 5 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I 84 (218)
|.||++|++|.++|.+|||||++-..++.+.|++.+.+++++|++.|||+||||..|..|.||..+|++|++..|+++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999766667789999999999999999999999999977799999999999988999999
Q ss_pred EeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHH-----HHHHHHHHHHHhCCcCEEecCcc
Q 027845 85 ATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-----VTIGELKKLVEEGKIKYIGLSEA 159 (218)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~-----~~~~~l~~l~~~G~ir~iGvs~~ 159 (218)
+||+.... -.+++.+++-++++|++||+||+|+|+||..+. ..++ ++++.+++++++|+||++|+|.|
T Consensus 81 aTKlp~~~------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSfH 153 (391)
T COG1453 81 ATKLPSWP------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFH 153 (391)
T ss_pred EeecCCcc------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecCC
Confidence 99998544 357999999999999999999999999999976 4443 36999999999999999999998
Q ss_pred c-HHHHHHHhcCCCeeEEcccCCcccccch--hchHHHHHhcCCCeeeEehhhHH--hhh
Q 027845 160 C-AATIRRAHAVHPITAVQLEWSLWSRDVE--AEIVPTCSACRSSKLKIWSIIKS--YLS 214 (218)
Q Consensus 160 ~-~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~l~~~~~~~g~i~i~~~spl~g--~L~ 214 (218)
+ .+.+.++++..+++.+|+.||.++.... .+.+++|.++| +||++++|+.| ++.
T Consensus 154 gs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~-~gI~IMeP~~gG~l~~ 212 (391)
T COG1453 154 GSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKG-LGIFIMEPLDGGGLLY 212 (391)
T ss_pred CCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCC-CcEEEEeeCCCCCccc
Confidence 6 5678889999999999999999998743 48999999999 99999999944 654
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.3e-39 Score=258.41 Aligned_cols=209 Identities=29% Similarity=0.364 Sum_probs=182.5
Q ss_pred CccceecCCCCcccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEE
Q 027845 4 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVE 83 (218)
Q Consensus 4 ~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~ 83 (218)
+|++|.+|++|+.||+++||...++..|+. .++++....+..|+++|||+||||+.||.+.+|+.+|.++++.||+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 389999999999999999999999998887 4667777777779999999999999999999999999999999999999
Q ss_pred EEeccCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC----CCHHHHHHHHHHHHHhCCcCEEecCc
Q 027845 84 LATKFGISFAD-GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----IPIEVTIGELKKLVEEGKIKYIGLSE 158 (218)
Q Consensus 84 I~tK~~~~~~~-~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~----~~~~~~~~~l~~l~~~G~ir~iGvs~ 158 (218)
|+||++...-. ...++++++.+++++++||+||+++|+|++++|..+.. ..+.|++.+|++++++||||+||++.
T Consensus 100 IaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitg 179 (342)
T KOG1576|consen 100 IATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITG 179 (342)
T ss_pred eeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecc
Confidence 99999965422 25689999999999999999999999999999997654 23569999999999999999999999
Q ss_pred ccHHHHHHHhcCC--CeeEEc--ccCCcccccchhchHHHHHhcCCCeeeEehhhHH-hhhh
Q 027845 159 ACAATIRRAHAVH--PITAVQ--LEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKS-YLSV 215 (218)
Q Consensus 159 ~~~~~l~~~~~~~--~~~~~q--~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g-~L~~ 215 (218)
++.+.+....+.. ..+++- .+|++.+..- -..++..++.| ++++.-++++= +|+-
T Consensus 180 ypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~-vgVi~AsalsmgLLt~ 239 (342)
T KOG1576|consen 180 YPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKG-VGVINASALSMGLLTN 239 (342)
T ss_pred cchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcC-ceEEehhhHHHHHhhc
Confidence 9999999998874 477777 5666665543 26777888999 99999999965 7764
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.11 E-value=6e-06 Score=66.09 Aligned_cols=70 Identities=20% Similarity=0.140 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC--CCeeEEcccCCcccccchhchHHHHHhcCCCeeeEeh
Q 027845 136 EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 136 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~s 207 (218)
.++|..||+++.+|+|..||+|.|++.+|+++++. ..|..+|++..-...-+ +++.++|..|+ +..+..+
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hd-iQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHD-IQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcc-eeeeecC
Confidence 46899999999999999999999999999999988 67899999877666554 59999999999 8777654
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.99 E-value=1.1 Score=37.88 Aligned_cols=153 Identities=13% Similarity=0.044 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
+.++..+.++.+.+.|++.|+.--.-......+.+ +++++... ++-|.-+....+ +.+.. ..+-+.|+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v-~~lr~~~g-~~~l~vD~n~~~--------~~~~A-~~~~~~l~~ 202 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERI-RAIREAAP-DARLRVDANQGW--------TPEEA-VELLRELAE 202 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHH-HHHHHhCC-CCeEEEeCCCCc--------CHHHH-HHHHHHHHh
Confidence 45667788888999999999875311111122333 34444222 666777765333 34332 223334444
Q ss_pred cCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHH
Q 027845 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 193 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~ 193 (218)
.+ +.++-.|-+. +-++.+.+|++...|. ..|=+-++...+.++++....+++|+..+..-- .....+..
T Consensus 203 ~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~ 273 (316)
T cd03319 203 LG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIAD 273 (316)
T ss_pred cC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHH
Confidence 44 4444544322 2356677788777665 445556899999999999999999998665422 22248999
Q ss_pred HHHhcCCCeeeEehhh
Q 027845 194 TCSACRSSKLKIWSII 209 (218)
Q Consensus 194 ~~~~~g~i~i~~~spl 209 (218)
.|+++| +.+...+-+
T Consensus 274 ~a~~~g-i~~~~~~~~ 288 (316)
T cd03319 274 LARAAG-LKVMVGCMV 288 (316)
T ss_pred HHHHcC-CCEEEECch
Confidence 999999 888775444
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=91.26 E-value=8.8 Score=32.95 Aligned_cols=153 Identities=12% Similarity=0.065 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCC------CcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGP------YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACC 109 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~------g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (218)
+.++..+.++.+.+.|++.|-.--..+. ....+.+ +++++.-.+++.|....... .+.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~~--------~~~~~a~--- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANGR--------WDLAEAI--- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCCC--------CCHHHHH---
Confidence 4566778888889999999876432221 0122223 34444233456666655322 3444333
Q ss_pred HHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cc
Q 027845 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DV 187 (218)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~ 187 (218)
+.+++|. ..++.++..|-+. +-++.+.++++.-.+. ..|=|-++++.+.++++....+++|+...-.-- ..
T Consensus 207 -~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~ 279 (357)
T cd03316 207 -RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITE 279 (357)
T ss_pred -HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 2333332 2345556665332 2456677777775554 445555889999999988889999998665432 22
Q ss_pred hhchHHHHHhcCCCeeeEehh
Q 027845 188 EAEIVPTCSACRSSKLKIWSI 208 (218)
Q Consensus 188 ~~~l~~~~~~~g~i~i~~~sp 208 (218)
...+.+.|+++| +.++..+-
T Consensus 280 ~~~i~~~a~~~g-~~~~~~~~ 299 (357)
T cd03316 280 AKKIAALAEAHG-VRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHcC-CeEeccCC
Confidence 248999999999 88876653
No 21
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.01 E-value=2.9 Score=36.64 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC
Q 027845 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg 117 (218)
.....++++|++.|++++|||.... ....+.... .+..+.+..-+|..+ ..+---....+++..+ .
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~dP------Gi~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFDP------GITNVLAAYAAKELFD--E 144 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcCc------chHHHHHHHHHHHhhc--c
Confidence 4566899999999999999997665 222222222 345566666666544 2344334444443333 5
Q ss_pred CCccceEeeecCCCC
Q 027845 118 IDCIDLYYQHRVDTK 132 (218)
Q Consensus 118 ~~~lDl~~lh~~d~~ 132 (218)
++++|+|..+-|++.
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 789999999999775
No 22
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=87.89 E-value=1.7 Score=34.73 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC-cccHHHHHHHhcCCCeeEEcccC
Q 027845 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEW 180 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 180 (218)
.+..+|.|++=+.+........+.+.+-+-.+.+ .+.++.+||. |.+++.+.++.+...++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 3456999999987555443445555443333332 2568899986 78999999999999999999975
No 23
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=84.48 E-value=2.8 Score=33.52 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=46.5
Q ss_pred HHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC-cccHHHHHHHhcCCCeeEEcccCC
Q 027845 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 181 (218)
+.++|.|++=+.+.....+..+.+.+-+....+ .+.+..+||. |.+++.+.++++...++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 346899998887544333334444433333332 3568899987 679999999999999999999753
No 24
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.42 E-value=20 Score=29.06 Aligned_cols=147 Identities=10% Similarity=0.049 Sum_probs=77.3
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCC------CcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGP------YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRAC 108 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~------g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~ 108 (218)
.+.++..++++...+.|+..++....-.. -..++.+.+..+..+...+...++. ..+.+++.
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~------------~~~~i~~a 83 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN------------REKGIERA 83 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC------------chhhHHHH
Confidence 46688999999999999999998754332 2344555444333322222222211 12333333
Q ss_pred HHHHHHHcCCCccceEeeecC---------CCCCCHHHHHHHHHHHHHhCCcCEEecC---c--ccHHHHHHHhcC---C
Q 027845 109 CEASLKRLDIDCIDLYYQHRV---------DTKIPIEVTIGELKKLVEEGKIKYIGLS---E--ACAATIRRAHAV---H 171 (218)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~---------d~~~~~~~~~~~l~~l~~~G~ir~iGvs---~--~~~~~l~~~~~~---~ 171 (218)
.+ .|.+.+-++.--.. +....++.+.++++.+++.|.--.+.++ . ++++.+.++.+. .
T Consensus 84 ~~-----~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 84 LE-----AGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred Hh-----CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 32 35554444432210 1112456788999999999986666553 3 555555554443 3
Q ss_pred CeeEEcccCC--cccccchhchHHHHHhc
Q 027845 172 PITAVQLEWS--LWSRDVEAEIVPTCSAC 198 (218)
Q Consensus 172 ~~~~~q~~~n--~~~~~~~~~l~~~~~~~ 198 (218)
.++.+.+.=+ ...+.....++...++.
T Consensus 159 g~~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 159 GADEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred CCCEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 3444443222 22233223666666554
No 25
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=84.22 E-value=3.4 Score=32.62 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=92.5
Q ss_pred HHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 027845 42 ALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCI 121 (218)
Q Consensus 42 ~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~l 121 (218)
+++...++.|-+..|-....| . +-+.|++ .++ +. =.| .+.+++.+.+++++-+.-...| +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG-----~-LL~~L~~-~k~-v~---g~G--------vEid~~~v~~cv~rGv~Viq~D-l 64 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG-----E-LLAYLKD-EKQ-VD---GYG--------VEIDPDNVAACVARGVSVIQGD-L 64 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch-----H-HHHHHHH-hcC-Ce---EEE--------EecCHHHHHHHHHcCCCEEECC-H
Confidence 566778888999999775444 2 3355544 111 10 011 2356777777766555444332 2
Q ss_pred ceEeeecCCCCCC----------HHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC--CCeeEEcccCCcccccch-
Q 027845 122 DLYYQHRVDTKIP----------IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVE- 188 (218)
Q Consensus 122 Dl~~lh~~d~~~~----------~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~- 188 (218)
|--+-+.||...+ +......|+++.+-|+-.=+++.||.-+..+.-+-. --|..-+.+|+-+++..-
T Consensus 65 d~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih 144 (193)
T PF07021_consen 65 DEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIH 144 (193)
T ss_pred HHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcc
Confidence 3233334444333 223455677888889888899999988876654442 346778888888887522
Q ss_pred ----hchHHHHHhcCCCeeeEehhhHH
Q 027845 189 ----AEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 189 ----~~l~~~~~~~g~i~i~~~spl~g 211 (218)
.+..++|++.| +.|.-..++.+
T Consensus 145 ~~Ti~DFe~lc~~~~-i~I~~~~~~~~ 170 (193)
T PF07021_consen 145 LCTIKDFEDLCRELG-IRIEERVFLDG 170 (193)
T ss_pred cccHHHHHHHHHHCC-CEEEEEEEEcC
Confidence 37888999999 99988777743
No 26
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=82.74 E-value=29 Score=29.52 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHCCCCeeecc---C-----CcCCC----cHHHHHHHHhcCC---CCCCEEEEeccCCCCCCCCCCCC
Q 027845 36 PEPDMIALIHHAINSGITLLDTS---D-----IYGPY----TNEILVGKALKGG---MRERVELATKFGISFADGGKIRG 100 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta---~-----~Yg~g----~se~~lg~~l~~~---~r~~~~I~tK~~~~~~~~~~~~~ 100 (218)
++++..++...+.+.|+..||-- + .+|.| ..-+.+.+.++.. ..+++-|+.|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 55667777788888999998832 1 24544 2334445554441 1235778888754331
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHH---HHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCCCeeEE
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEV---TIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAV 176 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~---~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~ 176 (218)
+.+. ...+-+.++..| +|.+.+|.-........ -|+...++++.-.|-=||... ++++...++++....+.+
T Consensus 146 ~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgV 221 (312)
T PRK10550 146 SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAV 221 (312)
T ss_pred CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEE
Confidence 1222 235556677777 46677786432221111 367788888877777788776 688888888876555555
Q ss_pred cc
Q 027845 177 QL 178 (218)
Q Consensus 177 q~ 178 (218)
++
T Consensus 222 mi 223 (312)
T PRK10550 222 MI 223 (312)
T ss_pred EE
Confidence 54
No 27
>PRK13796 GTPase YqeH; Provisional
Probab=82.47 E-value=32 Score=29.87 Aligned_cols=123 Identities=13% Similarity=0.131 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHHCC---CCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSG---ITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~G---i~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (218)
.+.++..++++...+.- +-.+|..+.-+ .-...+.+... .+.-++|.+|.-... .....+.+.+-++.
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl~-----~~~~~~~i~~~l~~ 124 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLLP-----KSVKKNKVKNWLRQ 124 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhCC-----CccCHHHHHHHHHH
Confidence 45566777777776655 34567655433 22334444442 456788999987533 12345566666666
Q ss_pred HHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHH
Q 027845 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 167 (218)
..+.+|....+++.+..- ....++++++.+.+..+.+.+--+|.+|..-..|--.
T Consensus 125 ~~k~~g~~~~~v~~vSAk-~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQ-KGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred HHHhcCCCcCcEEEEECC-CCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 677778654577776544 3467888999998887778888999999887764443
No 28
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=82.33 E-value=26 Score=28.71 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=92.3
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
+.++..+.++.+.+.|++.|..--.-.. ..+...=+++++.-.+++.|.-..... .+.+...+-+ +.|+.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan~~--------~~~~~a~~~~-~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDANRG--------WTPKQAIRAL-RALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCCCC--------cCHHHHHHHH-HHHHh
Confidence 4456777888889999999876532110 112222244444233455554444322 3444333322 23344
Q ss_pred cCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHH
Q 027845 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 193 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~ 193 (218)
+ ++.++..|-+.. -++.+.++++.-.+. ..|=+-++...+.++++....+++|+..+..-- .....+.+
T Consensus 155 ~-----~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~ 225 (265)
T cd03315 155 L-----GLDYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLA 225 (265)
T ss_pred c-----CCCEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHH
Confidence 4 444556663322 346667777765554 455566889999999988889999998765443 22358999
Q ss_pred HHHhcCCCeeeEehhh
Q 027845 194 TCSACRSSKLKIWSII 209 (218)
Q Consensus 194 ~~~~~g~i~i~~~spl 209 (218)
.|+++| +.+...+.+
T Consensus 226 ~A~~~g-i~~~~~~~~ 240 (265)
T cd03315 226 VAEALG-LPVMVGSMI 240 (265)
T ss_pred HHHHcC-CcEEecCcc
Confidence 999999 888775544
No 29
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=81.36 E-value=7.7 Score=31.60 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhC-CcCEEecCcccHHHHHHHhcCCCeeEEcc
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (218)
.+.+...+ +-+.|.++|++++++-....+......++.++.++++.+.+ .++...++....+.++.+.+.. ++.+++
T Consensus 16 ~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i 93 (265)
T cd03174 16 FSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRI 93 (265)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEE
Confidence 44554444 44457788998888866554422212245788888888888 5666566665566677666653 455666
Q ss_pred cCCccc--------------ccchhchHHHHHhcCCCeeeE
Q 027845 179 EWSLWS--------------RDVEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 179 ~~n~~~--------------~~~~~~l~~~~~~~g~i~i~~ 205 (218)
.+..-+ .+.....++.++++| +.+..
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G-~~v~~ 133 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG-LEVEG 133 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 554431 111236778888888 65543
No 30
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=80.82 E-value=32 Score=29.60 Aligned_cols=152 Identities=9% Similarity=-0.004 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHc
Q 027845 37 EPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (218)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 116 (218)
.++..+.++.+.+.|++.|=.--...+-..+.-.=+++++...+++.|..-.... .+++...+-++ .|+.+
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~--------~~~~~A~~~~~-~l~~~ 212 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQS--------LTVPEAIERGQ-ALDQE 212 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCC--------cCHHHHHHHHH-HHHcC
Confidence 3456666777778888876443211110122223345555334455555443322 34444332222 23333
Q ss_pred CCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHHH
Q 027845 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPT 194 (218)
Q Consensus 117 g~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~ 194 (218)
++.++..|-.. +-++.+.++++.-.|. +.|=+.+++..+.++++...++++|+..+-.-- ....++.+.
T Consensus 213 -----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~ 283 (355)
T cd03321 213 -----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASAL 283 (355)
T ss_pred -----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHH
Confidence 45556655332 2356677777765543 566667899999999988889999987765432 122488999
Q ss_pred HHhcCCCeeeEeh
Q 027845 195 CSACRSSKLKIWS 207 (218)
Q Consensus 195 ~~~~g~i~i~~~s 207 (218)
|+++| +.+...+
T Consensus 284 A~~~g-i~~~~h~ 295 (355)
T cd03321 284 AEQAG-IPMSSHL 295 (355)
T ss_pred HHHcC-Ceecccc
Confidence 99999 8876543
No 31
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=79.76 E-value=14 Score=27.55 Aligned_cols=63 Identities=6% Similarity=0.160 Sum_probs=48.1
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEeeecCCCCCCHHHHHHHHHHHHHh
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~ 148 (218)
+|=-+.|+-|++. . ..+..+++.++++++... ....|++++.......++.++.+.|.++.++
T Consensus 46 ~RlG~sVSKKvg~-A-------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK-A-------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc-c-------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 4556888888774 2 568889999999888763 4568999999988777888887777776654
No 32
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=79.46 E-value=43 Score=29.48 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=77.9
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCCC----cHHHHHHHHhcC-----CCCCCEEEEeccCCCCCCCCCCCCCHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGPY----TNEILVGKALKG-----GMRERVELATKFGISFADGGKIRGDPAYV 105 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g----~se~~lg~~l~~-----~~r~~~~I~tK~~~~~~~~~~~~~~~~~i 105 (218)
.+.+++.+++..|+++|- ...|++. .+.+.+.+.+.+ ...++++|++-..
T Consensus 78 ~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~---------------- 136 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS---------------- 136 (447)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccch----------------
Confidence 355679999999999973 4567653 466777777644 4578888876543
Q ss_pred HHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC---cc--cHHHHHHHhcCCCe-eEEccc
Q 027845 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS---EA--CAATIRRAHAVHPI-TAVQLE 179 (218)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs---~~--~~~~l~~~~~~~~~-~~~q~~ 179 (218)
.+++-.+..|-...-.+ ++-+| ..++-++...-..| -||++-+- +| +.++++.+++.-.. -++-++
T Consensus 137 -qAIe~~i~~LA~p~aNI-LlPrP--Gfp~Y~~~a~~~~l----EVR~ydlLPe~~weIDL~~veal~DENT~AivviNP 208 (447)
T KOG0259|consen 137 -QAIELAISSLANPGANI-LLPRP--GFPLYDTRAIYSGL----EVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINP 208 (447)
T ss_pred -HHHHHHHHHhcCCCCce-ecCCC--CCchHHHhhhhcCc----eeEeecccCcccceechHHHHHhhccCeeEEEEeCC
Confidence 23343444443222222 23333 23333332222111 12333221 12 34456666555332 233334
Q ss_pred CC----cccccchhchHHHHHhcCCCeeeEehhh
Q 027845 180 WS----LWSRDVEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 180 ~n----~~~~~~~~~l~~~~~~~g~i~i~~~spl 209 (218)
-| ++..++.+++++.|+++| +-|++-..+
T Consensus 209 ~NPcGnVys~~HL~kiae~A~klg-i~vIaDEVY 241 (447)
T KOG0259|consen 209 NNPCGNVYSEDHLKKIAETAKKLG-IMVIADEVY 241 (447)
T ss_pred CCCCcccccHHHHHHHHHHHHHhC-CeEEehhhc
Confidence 43 455567779999999999 777664433
No 33
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=79.38 E-value=8.1 Score=30.93 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCC-CcHH---HHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGP-YTNE---ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~-g~se---~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (218)
++++...+.+.+.+.|..|+-|+..|+. |-+. +.+.+.++ + -+..|..... .+.+...+-++.
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~--~v~IKaaGGi-------rt~~~a~~~i~a 196 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----D--TIGVKASGGV-------RTAEDAIAMIEA 196 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----c--CCeEEEeCCC-------CCHHHHHHHHHH
Confidence 4567789999999999999999999874 3222 33444442 2 2355544322 367888888888
Q ss_pred HHHHcCCCc
Q 027845 112 SLKRLDIDC 120 (218)
Q Consensus 112 sL~~Lg~~~ 120 (218)
--.|+|+++
T Consensus 197 Ga~riGts~ 205 (211)
T TIGR00126 197 GASRIGASA 205 (211)
T ss_pred hhHHhCcch
Confidence 889999875
No 34
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=79.16 E-value=13 Score=29.80 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=84.2
Q ss_pred CChHHHHHHHHHHHHCCCCeeecc-CCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTS-DIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta-~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (218)
.+.++..++++...+.||..|+.. +..+ -...+.+.+..+..+...+ .+... ...+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~-~~~~~~v~~~~~~~~~~~~--~~~~~----------~~~~~i~~~~~~~- 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFAS-EDDFEQVRRLREALPNARL--QALCR----------ANEEDIERAVEAA- 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSS-HHHHHHHHHHHHHHHSSEE--EEEEE----------SCHHHHHHHHHHH-
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccC-HHHHHHhhhhhhhhccccc--ceeee----------ehHHHHHHHHHhh-
Confidence 466788999999999999999999 3333 1223334443333233222 22221 2366677777644
Q ss_pred HHcCCCccceEeeecCC-----CCCC----HHHHHHHHHHHHHhCCcCEEecCc---ccHHHHHHHhcC---CCeeEEcc
Q 027845 114 KRLDIDCIDLYYQHRVD-----TKIP----IEVTIGELKKLVEEGKIKYIGLSE---ACAATIRRAHAV---HPITAVQL 178 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d-----~~~~----~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~l~~~~~~---~~~~~~q~ 178 (218)
...|.+.+.++.--++- ...+ ++.+.+.++..++.|....+++-. ++++.+.++.+. ..++.+.+
T Consensus 77 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l 156 (237)
T PF00682_consen 77 KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYL 156 (237)
T ss_dssp HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEE
T ss_pred HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEe
Confidence 56787777765432220 0111 445667777888999888888744 667766666554 34555555
Q ss_pred c--CCcccccchhchHHHHHhc
Q 027845 179 E--WSLWSRDVEAEIVPTCSAC 198 (218)
Q Consensus 179 ~--~n~~~~~~~~~l~~~~~~~ 198 (218)
. ...+.+..-.++++..++.
T Consensus 157 ~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 157 ADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp EETTS-S-HHHHHHHHHHHHHH
T ss_pred eCccCCcCHHHHHHHHHHHHHh
Confidence 3 2333333223666666664
No 35
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=78.85 E-value=37 Score=28.31 Aligned_cols=150 Identities=11% Similarity=0.102 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHHCCCCeeecc----------CCcCCCcHHHHHHHHhcCCCCC-CEEEEeccCCCCCCCCCCCCCHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTS----------DIYGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAY 104 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta----------~~Yg~g~se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~~~ 104 (218)
+.++..++.+.+.+.|+..||.- ..|+ .+.+.+.+.++...+. ++-|..|+.+.. +.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----------~~ 167 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV----------TD 167 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc----------hh
Confidence 45667888888888999998872 1222 4556666666553222 677888986432 12
Q ss_pred HHHHHHHHHHHcCCCccceEe------eecCC--C---------CC--CHHHHHHHHHHHHHhCCcCEEecCc-ccHHHH
Q 027845 105 VRACCEASLKRLDIDCIDLYY------QHRVD--T---------KI--PIEVTIGELKKLVEEGKIKYIGLSE-ACAATI 164 (218)
Q Consensus 105 i~~~~~~sL~~Lg~~~lDl~~------lh~~d--~---------~~--~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l 164 (218)
+ ..+-+.+...|.+.+++.- +|... + .. ...-.++.+.++++.=.+--||... ++++.+
T Consensus 168 ~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 168 I-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred H-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 2 2333456778877766531 11100 0 00 0112567777777765688888887 578899
Q ss_pred HHHhcCCCeeEEcccCCccc-cc----chhchHHHHHhcC
Q 027845 165 RRAHAVHPITAVQLEWSLWS-RD----VEAEIVPTCSACR 199 (218)
Q Consensus 165 ~~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~g 199 (218)
.+++... .+.+|+-=-++. +. ..+++.++.+++|
T Consensus 247 ~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 247 LEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred HHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcC
Confidence 9988754 577776332222 21 2346777777777
No 36
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=78.63 E-value=0.94 Score=39.23 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=41.1
Q ss_pred hCCcCEEecCcccHHHHHHHhcCC-CeeEEcccCCcccccchhchHHHHHhcCCCe
Q 027845 148 EGKIKYIGLSEACAATIRRAHAVH-PITAVQLEWSLWSRDVEAEIVPTCSACRSSK 202 (218)
Q Consensus 148 ~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~ 202 (218)
-|+||++||-=++++.+.++.... .-+..+....++.....+.+++.+++.| |+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~G-ip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDG-IP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcC-Cc
Confidence 499999999999999999987773 2345555555555555568999999999 54
No 37
>PLN02389 biotin synthase
Probab=78.18 E-value=47 Score=29.13 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCc-CCCc---HHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIY-GPYT---NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Y-g~g~---se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (218)
.+.++..+.++.+.+.|++.|--.... +.+. .-+.+-+.++.+....+.|....+. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~---------l~~E~l----- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM---------LEKEQA----- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC---------CCHHHH-----
Confidence 477889999999999999988543221 1111 1234445555533333445544432 223333
Q ss_pred HHHHHcCCCccceEeeec-C------CCCCCHHHHHHHHHHHHHhCC
Q 027845 111 ASLKRLDIDCIDLYYQHR-V------DTKIPIEVTIGELKKLVEEGK 150 (218)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~-~------d~~~~~~~~~~~l~~l~~~G~ 150 (218)
+.|+.-|++++-.-+ .. + -....+++.++.++.+++.|.
T Consensus 182 ~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 235555776543321 10 1 112457889999999999995
No 38
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=78.03 E-value=37 Score=27.88 Aligned_cols=146 Identities=12% Similarity=0.043 Sum_probs=75.6
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccCC-----------cCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCH
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSDI-----------YGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDP 102 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~-----------Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~ 102 (218)
..+.++..++++...+.|+..++.... |..-..++.+.+..+..+..++.+..- +.. ...
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~--~~~-------~~~ 88 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLL--PGI-------GTV 88 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEec--CCc-------cCH
Confidence 346788999999999999999999721 221234555555544434434332221 111 123
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC---cccHHHHHHHhcC---CCeeEE
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS---EACAATIRRAHAV---HPITAV 176 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs---~~~~~~l~~~~~~---~~~~~~ 176 (218)
+.+ +.+++ .|++.+-++. ...+...+.+.++..++.|.--.+.++ .++++.+.++.+. ..++.+
T Consensus 89 ~~i----~~a~~-~g~~~iri~~-----~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 158 (263)
T cd07943 89 DDL----KMAAD-LGVDVVRVAT-----HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV 158 (263)
T ss_pred HHH----HHHHH-cCCCEEEEEe-----chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE
Confidence 334 33332 3555544432 112345677778888888875555542 2566666555444 334443
Q ss_pred ccc--CCcccccchhchHHHHHhc
Q 027845 177 QLE--WSLWSRDVEAEIVPTCSAC 198 (218)
Q Consensus 177 q~~--~n~~~~~~~~~l~~~~~~~ 198 (218)
.+. +-.+.+..-.++++.++++
T Consensus 159 ~l~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 159 YVTDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred EEcCCCCCcCHHHHHHHHHHHHHh
Confidence 332 1122222223566666554
No 39
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=77.19 E-value=14 Score=30.20 Aligned_cols=131 Identities=15% Similarity=0.005 Sum_probs=68.1
Q ss_pred cCcceecccccCCCCCCCCChHHHHHHHHHHHH-CCCCeeeccCCcCCCc---HHHHHHHHhcCCCCCCEEEEeccCCCC
Q 027845 17 VSAQGLGCMAMSCLYGPPEPEPDMIALIHHAIN-SGITLLDTSDIYGPYT---NEILVGKALKGGMRERVELATKFGISF 92 (218)
Q Consensus 17 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gi~~~Dta~~Yg~g~---se~~lg~~l~~~~r~~~~I~tK~~~~~ 92 (218)
-|++-+||..+. +. ++++.|++ +|-..+=.|----+-. .+. ..+.-++++++.+.-...
T Consensus 8 ~SRL~lGTgky~-------s~----~~m~~ai~aSg~evvTvalRR~~~~~~~~~~---~~~~~i~~~~~~lLPNTa--- 70 (247)
T PF05690_consen 8 RSRLILGTGKYP-------SP----EVMREAIEASGAEVVTVALRRVNLGSKPGGD---NILDYIDRSGYTLLPNTA--- 70 (247)
T ss_dssp S-SEEEE-STSS-------SH----HHHHHHHHHTT-SEEEEECCGSTTTS-TTCH---HCCCCTTCCTSEEEEE-T---
T ss_pred ecceEEecCCCC-------CH----HHHHHHHHHhCCcEEEEEEecccCCCCCCCc---cHHHHhcccCCEECCcCC---
Confidence 368999998772 22 44555554 3655543331110000 111 122224555555433322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC-CCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC
Q 027845 93 ADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 170 (218)
.+.+.++-.+..+-..+.++++.|-|=.+..+..- -+..|++++-++|+++|-+-. --++-++-..+++.+.
T Consensus 71 -----Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~akrL~d~ 143 (247)
T PF05690_consen 71 -----GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEDA 143 (247)
T ss_dssp -----T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEE-EEE-S-HHHHHHHHHT
T ss_pred -----CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHHC
Confidence 24568888888888889999998887777665543 356799999999999996532 2233345555555444
No 40
>PRK08392 hypothetical protein; Provisional
Probab=76.84 E-value=36 Score=27.05 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=72.8
Q ss_pred HHHHHHHHHHCCCCeeeccCCcCC---CcHHHHHHHHhcCCCCCCE--EEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 40 MIALIHHAINSGITLLDTSDIYGP---YTNEILVGKALKGGMRERV--ELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg~---g~se~~lg~~l~~~~r~~~--~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
..+.++.|.+.|++.+=.+++... ..-+..+.+..+-..+.++ .+..-+...+ .. ....+..++
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~----------~~-~~~~~~~~~ 84 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP----------NG-VDITDDFAK 84 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC----------Cc-chhHHHHHh
Confidence 678899999999998866655421 0111222222111111222 2223332221 11 122333444
Q ss_pred HcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc----c----cHHHHHHHhcC-----CCeeEEcccCC
Q 027845 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE----A----CAATIRRAHAV-----HPITAVQLEWS 181 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~----~----~~~~l~~~~~~-----~~~~~~q~~~n 181 (218)
+ .||+ +..+|.+......++-.+.+.++.+.+.+--+|=-. + ..+.+.++++. ..+.+|- .
T Consensus 85 ~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~-- 158 (215)
T PRK08392 85 K--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-R-- 158 (215)
T ss_pred h--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-C--
Confidence 3 3554 667885432233456778888888888776665321 1 11233333322 2344442 1
Q ss_pred cccccchhchHHHHHhcCCCeeeE
Q 027845 182 LWSRDVEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~i~i~~ 205 (218)
.+-+...+++.|++.| +.+..
T Consensus 159 --~~~p~~~~l~~~~~~G-~~~~i 179 (215)
T PRK08392 159 --YRVPDLEFIRECIKRG-IKLTF 179 (215)
T ss_pred --CCCCCHHHHHHHHHcC-CEEEE
Confidence 1222247899999999 66643
No 41
>PLN02363 phosphoribosylanthranilate isomerase
Probab=75.82 E-value=8.9 Score=31.67 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC-cccHHHHHHHhcCCCeeEEccc
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 179 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~ 179 (218)
+++.++.. .++|.|++=+++........+.+++-+....+ ....++.+||. |-+++.+.++.+...++++|+.
T Consensus 56 ~~eda~~a-----~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l-~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMA-----VEAGADFIGMILWPKSKRSISLSVAKEISQVA-REGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHH-----HHcCCCEEEEecCCCCCCcCCHHHHHHHHHhc-cccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 35555544 35899999887544333344554444333333 22246689985 7899999999999999999997
Q ss_pred CC
Q 027845 180 WS 181 (218)
Q Consensus 180 ~n 181 (218)
-+
T Consensus 130 G~ 131 (256)
T PLN02363 130 GN 131 (256)
T ss_pred CC
Confidence 53
No 42
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=75.61 E-value=40 Score=28.58 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=68.0
Q ss_pred HHHHHHHcCCCccceEeeecCCC-----CCCHHHHHHHHHHHHHhCCcC-EEecCc---ccHHHHHHHhcCCC-eeEEcc
Q 027845 109 CEASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEEGKIK-YIGLSE---ACAATIRRAHAVHP-ITAVQL 178 (218)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~-----~~~~~~~~~~l~~l~~~G~ir-~iGvs~---~~~~~l~~~~~~~~-~~~~q~ 178 (218)
.+++.++.|. |++.+|-... +.+..|+.+.|+++.+.=+|- -||-|. -+++.++++.+... -.|.-.
T Consensus 156 Ark~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLa 232 (403)
T COG2069 156 ARKCVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLA 232 (403)
T ss_pred HHHHHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEee
Confidence 4566778884 7888887532 356789999999988777764 578886 56888888877632 234444
Q ss_pred cCCcccccchhchHHHHHhcCCCeeeEehhh
Q 027845 179 EWSLWSRDVEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 179 ~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl 209 (218)
..|+ +... +.+.+.+.++| -.+++|+++
T Consensus 233 Sanl-dlDy-~~ia~AA~ky~-H~VLswt~~ 260 (403)
T COG2069 233 SANL-DLDY-ERIAEAALKYD-HVVLSWTQM 260 (403)
T ss_pred cccc-ccCH-HHHHHHHHhcC-ceEEEeecc
Confidence 4443 3333 48999999999 999999987
No 43
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=75.41 E-value=49 Score=27.91 Aligned_cols=161 Identities=13% Similarity=0.002 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHHC-CCCeeeccCCcCCCc---HHHHHHHHhcCC--CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHH
Q 027845 36 PEPDMIALIHHAINS-GITLLDTSDIYGPYT---NEILVGKALKGG--MRERVELATKFGISFADGGKIRGDPAYVRACC 109 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~Dta~~Yg~g~---se~~lg~~l~~~--~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (218)
+.++..+.+...++. |.+.+|---.|+.-. +-..+-++|+.+ .+..+.|+--+...+ ....++.+ .+
T Consensus 88 ~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p-----~gl~~~g~--~~ 160 (294)
T cd06543 88 SADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLP-----TGLTPDGL--NV 160 (294)
T ss_pred cHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCC-----CCCChhHH--HH
Confidence 555556666666654 999999766655311 124455666552 234566666655333 12333332 24
Q ss_pred HHHHHHcCCCccceEeeecCCCC-----CC-HHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEcccCC--
Q 027845 110 EASLKRLDIDCIDLYYQHRVDTK-----IP-IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWS-- 181 (218)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~-----~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n-- 181 (218)
-+..+.-|+ ++|.+-+--.|.. .+ -..+..+.+.++.+=+--+=+ ++..++-..+...| .+=+....
T Consensus 161 l~~a~~~Gv-~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~ig~Tp-MiG~nD~~~e 235 (294)
T cd06543 161 LEAAAANGV-DLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAMIGVTP-MIGVNDVGSE 235 (294)
T ss_pred HHHHHHcCC-CcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHHccccc-cccccCCCCc
Confidence 444456665 3555544444332 22 233444554444332211112 34444444444433 11111111
Q ss_pred cccccchhchHHHHHhcCCCeeeEehhh
Q 027845 182 LWSRDVEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~i~i~~~spl 209 (218)
++.......+.++++++| ++.+.|..+
T Consensus 236 ~ft~~da~~~~~fA~~~~-l~~~s~Ws~ 262 (294)
T cd06543 236 VFTLADAQTLVDFAKEKG-LGRLSMWSL 262 (294)
T ss_pred eeeHHHHHHHHHHHHhCC-CCeEeeeec
Confidence 334444469999999999 888877665
No 44
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=75.38 E-value=52 Score=28.28 Aligned_cols=146 Identities=12% Similarity=0.047 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccC---------CcCC--CcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCH
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSD---------IYGP--YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDP 102 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~---------~Yg~--g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~ 102 (218)
..+.++..++++...++|+..|+.+. .||. -..++.+.++....++..+.... -+.. ...
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll--~pg~-------~~~ 91 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALL--LPGI-------GTV 91 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEe--ccCc-------ccH
Confidence 34678899999999999999999952 1222 13456665554443333332211 1111 224
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC---cccHHHHHHHhcC---CCeeEE
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS---EACAATIRRAHAV---HPITAV 176 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs---~~~~~~l~~~~~~---~~~~~~ 176 (218)
+.++++.+ .|++.+-+. .|. ...+.+.+.++..++.|.--.+.+. .++++.+.++.+. ..++++
T Consensus 92 ~dl~~a~~-----~gvd~iri~-~~~----~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i 161 (337)
T PRK08195 92 DDLKMAYD-----AGVRVVRVA-THC----TEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred HHHHHHHH-----cCCCEEEEE-Eec----chHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEE
Confidence 44444332 355554443 233 2344567777788888865444433 2556655554433 344444
Q ss_pred cccCC--cccccchhchHHHHHhc
Q 027845 177 QLEWS--LWSRDVEAEIVPTCSAC 198 (218)
Q Consensus 177 q~~~n--~~~~~~~~~l~~~~~~~ 198 (218)
-+.=+ .+.+....+++...++.
T Consensus 162 ~i~DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 162 YVVDSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHh
Confidence 43222 22222223555555543
No 45
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=73.90 E-value=50 Score=27.39 Aligned_cols=109 Identities=9% Similarity=-0.073 Sum_probs=63.2
Q ss_pred cceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCC
Q 027845 19 AQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKI 98 (218)
Q Consensus 19 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~ 98 (218)
.||++.|..-.+.|.-.++....+-..+.+.+..|.++.-..|=.-.+++.+-+|.++ ..+++..+.|+....+. .
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH---~ 79 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE-TPDDFRFSVKAPRAITH---Q 79 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh-CCCCeEEEEEecccccc---h
Confidence 4566666554433322233233333344555567766543333223577888888876 78999999998754421 1
Q ss_pred CCCH---HHHHHHHHHHHHHcCCCccceEeeecCCCC
Q 027845 99 RGDP---AYVRACCEASLKRLDIDCIDLYYQHRVDTK 132 (218)
Q Consensus 99 ~~~~---~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~ 132 (218)
.... ..+.+...+.++.|| +++..+++.-|...
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 80 RRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred hhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 1111 334444555556777 38999999998654
No 46
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=73.48 E-value=14 Score=30.57 Aligned_cols=79 Identities=13% Similarity=0.013 Sum_probs=51.6
Q ss_pred ChH-HHHHHHHHHHHCCCCeeeccCCcCCC-cHH---HHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHH
Q 027845 36 PEP-DMIALIHHAINSGITLLDTSDIYGPY-TNE---ILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCE 110 (218)
Q Consensus 36 ~~~-~~~~~l~~A~~~Gi~~~Dta~~Yg~g-~se---~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (218)
+++ +..++.+.|.++|..|+=|+..|+.+ -+. +++-+++++. ...--+.-|..... .+.+...+-++
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~-~~~~~vgIKAsGGI-------rt~~~A~~~i~ 215 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM-GVAKTVGFKPAGGV-------RTAEDAAQYLA 215 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc-ccCCCeeEEccCCC-------CCHHHHHHHHH
Confidence 334 48889999999999999999999854 222 2333333221 00112555654322 46788888888
Q ss_pred HHHHHcCCCccc
Q 027845 111 ASLKRLDIDCID 122 (218)
Q Consensus 111 ~sL~~Lg~~~lD 122 (218)
..-+.||.++++
T Consensus 216 ag~~~lg~~~~~ 227 (257)
T PRK05283 216 LADEILGADWAD 227 (257)
T ss_pred HHHHHhChhhcC
Confidence 888899987654
No 47
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=73.01 E-value=27 Score=28.49 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=80.9
Q ss_pred HHHHHCCCCeeeccCCcCC--C-cHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 027845 45 HHAINSGITLLDTSDIYGP--Y-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCI 121 (218)
Q Consensus 45 ~~A~~~Gi~~~Dta~~Yg~--g-~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~l 121 (218)
..|++.|..+||.-+---. | .....+.+.... -..+.-+|..+|-.+ ..|..+..+..... .-|+||+
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~-~~~~~pvSAtiGDlp-------~~p~~~~~aa~~~a-~~Gvdyv 84 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIREIVAA-VPGRKPVSATIGDLP-------MKPGTASLAALGAA-ATGVDYV 84 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHH-cCCCCceEEEecCCC-------CCchHHHHHHHHHH-hcCCCEE
Confidence 5678899999998653211 2 234444333322 333466888887544 45666665554443 4588888
Q ss_pred ceEeeecCCCCCCHHHHHHHHH-------HHHHhCCcCEEecCcc------cHHHHHHHhcCCCeeEEccc------CCc
Q 027845 122 DLYYQHRVDTKIPIEVTIGELK-------KLVEEGKIKYIGLSEA------CAATIRRAHAVHPITAVQLE------WSL 182 (218)
Q Consensus 122 Dl~~lh~~d~~~~~~~~~~~l~-------~l~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~~------~n~ 182 (218)
-+=+.... +.++..+.|+ +.-.+.++-..+.+.+ ++..+-++.....++.+++. -++
T Consensus 85 KvGl~g~~----~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L 160 (235)
T PF04476_consen 85 KVGLFGCK----DYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSL 160 (235)
T ss_pred EEecCCCC----CHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCch
Confidence 77665432 3333333333 3333455667788876 35566556555566666663 234
Q ss_pred cccc---chhchHHHHHhcC
Q 027845 183 WSRD---VEAEIVPTCSACR 199 (218)
Q Consensus 183 ~~~~---~~~~l~~~~~~~g 199 (218)
++.- ...++++.|+++|
T Consensus 161 ~d~~~~~~L~~Fv~~ar~~g 180 (235)
T PF04476_consen 161 FDHLSEEELAEFVAQARAHG 180 (235)
T ss_pred hhcCCHHHHHHHHHHHHHcc
Confidence 4432 2236788899999
No 48
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=72.42 E-value=68 Score=28.21 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHH-CCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAIN-SGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~-~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (218)
.+.++..+.++.+.+ .|++.|=.-..-.+-..+...=+++++.- .++.|..=.... .+++. ..+.+
T Consensus 167 ~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~-~~~~l~vDaN~~--------w~~~~----A~~~~ 233 (395)
T cd03323 167 LTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAF-PGARLRLDPNGA--------WSLET----AIRLA 233 (395)
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhC-CCCcEEEeCCCC--------cCHHH----HHHHH
Confidence 355656666777775 59998865431110011111223344422 244444443322 34443 33333
Q ss_pred HHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhch
Q 027845 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEI 191 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l 191 (218)
++|. . ++.++..|=+ -++.+.+|++...+- +.|-|-++..++.++++....+++|......-- ....++
T Consensus 234 ~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ki 304 (395)
T cd03323 234 KELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRV 304 (395)
T ss_pred HhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHH
Confidence 4553 2 5666666632 467788888887665 667677888999999998889999998765432 122489
Q ss_pred HHHHHhcCCCeeeEehhh
Q 027845 192 VPTCSACRSSKLKIWSII 209 (218)
Q Consensus 192 ~~~~~~~g~i~i~~~spl 209 (218)
.+.|+++| +.+...+..
T Consensus 305 a~~A~~~g-i~~~~h~~~ 321 (395)
T cd03323 305 AQVCETWG-LGWGMHSNN 321 (395)
T ss_pred HHHHHHcC-CeEEEecCc
Confidence 99999999 988887654
No 49
>PRK05414 urocanate hydratase; Provisional
Probab=72.30 E-value=12 Score=33.93 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=80.1
Q ss_pred HHHHHHCCCCee--eccCCcC--------CCcHHHHHHHHhcC----CCCCCEEEEeccCCCCCC--------C---CCC
Q 027845 44 IHHAINSGITLL--DTSDIYG--------PYTNEILVGKALKG----GMRERVELATKFGISFAD--------G---GKI 98 (218)
Q Consensus 44 l~~A~~~Gi~~~--Dta~~Yg--------~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~--------~---~~~ 98 (218)
++..-+.|+..+ -||-.|. .|.-|.+ ..+-++ -.+.++++++-++..... + ...
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~-~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~v 196 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETF-AEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAV 196 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHH-HHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEE
Confidence 455556677655 3443321 1344443 344444 236778888888743311 0 112
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC---CCeeE
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPITA 175 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~ 175 (218)
+.+++.++ +|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.+.++++. +.+..
T Consensus 197 Evd~~ri~-------kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvt 262 (556)
T PRK05414 197 EVDESRID-------KRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVT 262 (556)
T ss_pred EECHHHHH-------HHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccC
Confidence 34555555 47778888763 367899999999999999999999999889999999887 34566
Q ss_pred EcccCC
Q 027845 176 VQLEWS 181 (218)
Q Consensus 176 ~q~~~n 181 (218)
-|...|
T Consensus 263 DQTSaH 268 (556)
T PRK05414 263 DQTSAH 268 (556)
T ss_pred cCcccc
Confidence 677553
No 50
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=72.20 E-value=36 Score=28.06 Aligned_cols=100 Identities=19% Similarity=0.109 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEe-eecCCCC-CCHH----HHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCe
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTK-IPIE----VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~-lh~~d~~-~~~~----~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 173 (218)
.+.+.+.+.+++.+ +-|.+.||+-- =.+|+.. .+.+ .+...++.+++.-.+ -+.+-+++++.++.+++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~-plSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDV-LISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-cEEEeCCCHHHHHHHHHhCCC
Confidence 34555555544443 55888999853 2234332 2333 344455666655333 388889999999999988644
Q ss_pred eEEcccCCcccccchhchHHHHHhcCCCeeeEe
Q 027845 174 TAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIW 206 (218)
Q Consensus 174 ~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~ 206 (218)
-+|-+ +..... +++++.++++| ..++++
T Consensus 99 iINdi--sg~~~~--~~~~~l~~~~~-~~vV~m 126 (257)
T cd00739 99 IINDV--SGGSDD--PAMLEVAAEYG-APLVLM 126 (257)
T ss_pred EEEeC--CCCCCC--hHHHHHHHHcC-CCEEEE
Confidence 44333 222222 57899999999 777664
No 51
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=72.16 E-value=38 Score=27.68 Aligned_cols=88 Identities=13% Similarity=0.019 Sum_probs=50.1
Q ss_pred HHHHcCCCccceEeeecCCCCCCHHH-HHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCCCeeEEcccCCccccc-ch
Q 027845 112 SLKRLDIDCIDLYYQHRVDTKIPIEV-TIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRD-VE 188 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~-~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~ 188 (218)
-++..|. |.+.+|..+....... -++.+.++++.-.+.-|.... .+++.+.++++....+.+.+---+.... ..
T Consensus 163 ~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~ 239 (254)
T TIGR00735 163 EVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITI 239 (254)
T ss_pred HHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCH
Confidence 3456664 6666676544321111 245555666555555554443 5688888888876566655532222222 23
Q ss_pred hchHHHHHhcCCCee
Q 027845 189 AEIVPTCSACRSSKL 203 (218)
Q Consensus 189 ~~l~~~~~~~g~i~i 203 (218)
.++.+.|+++| +.+
T Consensus 240 ~~~~~~~~~~g-i~~ 253 (254)
T TIGR00735 240 GEVKEYLAERG-IPV 253 (254)
T ss_pred HHHHHHHHHCC-Ccc
Confidence 58899999998 643
No 52
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=72.15 E-value=12 Score=33.84 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=79.7
Q ss_pred HHHHHHCCCCee--eccCCc--C------CCcHHHHHHHHhcC----CCCCCEEEEeccCCCCCC--------C---CCC
Q 027845 44 IHHAINSGITLL--DTSDIY--G------PYTNEILVGKALKG----GMRERVELATKFGISFAD--------G---GKI 98 (218)
Q Consensus 44 l~~A~~~Gi~~~--Dta~~Y--g------~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~--------~---~~~ 98 (218)
++..-+.|+..+ -||-.| - .|.-|. +..+-++ ..+.++++++-++..... + ...
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT-~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~v 187 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYET-FAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAV 187 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHH-HHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEE
Confidence 455566677655 344332 1 134444 3344444 236778888887743311 0 112
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC---CCeeE
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPITA 175 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~ 175 (218)
+.+++.++ +|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.+.++++. +.+..
T Consensus 188 Evd~~ri~-------kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 188 EVDESRID-------KRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred EECHHHHH-------HHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcC
Confidence 34455555 47778887763 367899999999999999999999999899999999887 34566
Q ss_pred EcccCC
Q 027845 176 VQLEWS 181 (218)
Q Consensus 176 ~q~~~n 181 (218)
-|...|
T Consensus 254 DQTSaH 259 (545)
T TIGR01228 254 DQTSAH 259 (545)
T ss_pred CCCccc
Confidence 676553
No 53
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=71.88 E-value=12 Score=29.97 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=51.9
Q ss_pred HHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC-cccHHHHHHHhcCCCeeEEcccCCcccccchhchH
Q 027845 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIV 192 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~ 192 (218)
..+|.+|+=+++.-...+..+.+++-+....... ++.+||. |.+.+++.++++..+++.+|++-. ...+.+
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~---~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~~~~ 90 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK---VKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDPEYI 90 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC---CCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCHHHH
Confidence 4688888887776643344555444333333322 7899987 588999999999999999999744 113556
Q ss_pred HHHHhc
Q 027845 193 PTCSAC 198 (218)
Q Consensus 193 ~~~~~~ 198 (218)
+..++.
T Consensus 91 ~~l~~~ 96 (208)
T COG0135 91 DQLKEE 96 (208)
T ss_pred HHHHhh
Confidence 666654
No 54
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=71.39 E-value=11 Score=33.76 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=46.0
Q ss_pred HHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC-cccHHHHHHHhcCCCeeEEcccCC
Q 027845 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 181 (218)
...+|.|++-+.+........+.+.+-+-...+. ++.+||- |-+++.+.++.+...++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4568999888875443334455554433333332 8899987 789999999999999999999764
No 55
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=70.98 E-value=69 Score=27.68 Aligned_cols=145 Identities=9% Similarity=0.038 Sum_probs=90.6
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
+.++..+.++.+.+.|++.|=.-- .+.+ +++++.-.+++.|..-.... .+++.. .+.++.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~v-~avre~~G~~~~l~vDaN~~--------w~~~~A----~~~~~~ 185 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKLF-EAVREKFGFEFHLLHDVHHR--------LTPNQA----ARFGKD 185 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHHH-HHHHhccCCCceEEEECCCC--------CCHHHH----HHHHHH
Confidence 445566777778889999886421 2223 34444223444444333221 344432 223333
Q ss_pred cCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHH
Q 027845 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 193 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~ 193 (218)
|. .+++.++-.|=+. +-++.+.+|++...+. ..|=|-++...+.++++...++++|+...-.-- ....++.+
T Consensus 186 l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~ 259 (361)
T cd03322 186 VE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIAD 259 (361)
T ss_pred hh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHH
Confidence 32 2466666666332 2367778888887665 677777899999999998889999998765331 22248999
Q ss_pred HHHhcCCCeeeEeh
Q 027845 194 TCSACRSSKLKIWS 207 (218)
Q Consensus 194 ~~~~~g~i~i~~~s 207 (218)
.|+++| +.+...+
T Consensus 260 ~A~~~g-i~~~~h~ 272 (361)
T cd03322 260 LASLYG-VRTGWHG 272 (361)
T ss_pred HHHHcC-CeeeccC
Confidence 999999 8886653
No 56
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=69.71 E-value=56 Score=26.14 Aligned_cols=136 Identities=16% Similarity=0.175 Sum_probs=83.9
Q ss_pred CCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHH
Q 027845 33 PPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (218)
Q Consensus 33 ~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (218)
+..++++..++++.|.+.|+.-+-..+.|- +...+.| ....+-|.|=++.... ..+.+.-...+++.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l---~~~~v~v~tVigFP~G-----~~~~~~K~~E~~~A 79 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELL---KGTEVRICTVVGFPLG-----ASTTDVKLYETKEA 79 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHc---CCCCCeEEEEeCCCCC-----CCcHHHHHHHHHHH
Confidence 345778899999999999998887766553 3344444 2346888888875431 12333333444444
Q ss_pred HHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh--CCcCEE--ecCcccHHHHHHHhcC---CCeeEEccc--CCc
Q 027845 113 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYI--GLSEACAATIRRAHAV---HPITAVQLE--WSL 182 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~--G~ir~i--Gvs~~~~~~l~~~~~~---~~~~~~q~~--~n~ 182 (218)
+ ++|.+-+|+++-...-...+.+.+.+.+.+.++. |..--+ =.+-.+.+++.++.+. ...+.+... |..
T Consensus 80 v-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~ 157 (211)
T TIGR00126 80 I-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGA 157 (211)
T ss_pred H-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 4 4799999998765543345667777777777764 443222 1112344555555444 567777777 664
No 57
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=69.45 E-value=47 Score=30.15 Aligned_cols=67 Identities=7% Similarity=0.067 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCcCE----EecCcccHHHHHHHhcC---CCeeEEcccCCcccccchhchHHHHHhcC
Q 027845 131 TKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCSACR 199 (218)
Q Consensus 131 ~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 199 (218)
.....++..++++.+++.|.... +|+-+.+.+.+++.++. .+++. +.++++.+-+..++.+.+++.+
T Consensus 318 K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~--~~~~~~tP~PGT~l~~~~~~~~ 391 (497)
T TIGR02026 318 KGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQ--ANWLMYTPWPFTSLFGELSDRV 391 (497)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCc--eEEEEecCCCCcHHHHHHHhhc
Confidence 34567788999999999987433 57777777777666554 34443 3445666665567777777766
No 58
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=68.25 E-value=66 Score=26.43 Aligned_cols=100 Identities=9% Similarity=-0.032 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHH-HHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC--CCeeEE
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAV 176 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~-~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~ 176 (218)
.+++.+.+.+++.++ -|.++||+-. .|. ..+.+ +.-+.+..+++.- =.-|.+-+++++.++++++. ...-+|
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~-~~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEP-TVPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhc-CCcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 456677777777664 4999999854 233 22323 3333333333221 13478889999999999986 444344
Q ss_pred cccCCcccc-cchhchHHHHHhcCCCeeeEeh
Q 027845 177 QLEWSLWSR-DVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 177 q~~~n~~~~-~~~~~l~~~~~~~g~i~i~~~s 207 (218)
-+. .... ...+.+++.++++| ..++++.
T Consensus 98 sIs--~~~~~e~~~~~~~~~~~~~-~~vV~m~ 126 (252)
T cd00740 98 SIN--LEDGEERFLKVARLAKEHG-AAVVVLA 126 (252)
T ss_pred eCC--CCCCccccHHHHHHHHHhC-CCEEEec
Confidence 333 2221 11247888899998 7666653
No 59
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=68.13 E-value=75 Score=27.03 Aligned_cols=123 Identities=14% Similarity=0.027 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHHHHC-CCCeeeccCCcCCCcHHHHHHH---HhcCCC-CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINS-GITLLDTSDIYGPYTNEILVGK---ALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCE 110 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~Dta~~Yg~g~se~~lg~---~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (218)
+.++..+++++..+. ||+-+--+-.-.--.+...+.+ .+++.+ ...+-|.|+..... +..+...+-
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~---------p~rit~ell 190 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVAD---------PARVTPALI 190 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC---------hhhcCHHHH
Confidence 446677888777655 8875532210000011222333 333322 33456777764332 344555555
Q ss_pred HHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEE------ecCcccHHHHHHHhcC
Q 027845 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI------GLSEACAATIRRAHAV 170 (218)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~i------Gvs~~~~~~l~~~~~~ 170 (218)
+.|++.|.. ..+.+|...+..-.++++++++.+++.|..-.. |+ |.+.+.+.++.+.
T Consensus 191 ~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~ 253 (321)
T TIGR03822 191 AALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRA 253 (321)
T ss_pred HHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHH
Confidence 667777742 357788765544457899999999999963211 43 5677776665543
No 60
>PRK00208 thiG thiazole synthase; Reviewed
Probab=67.91 E-value=68 Score=26.43 Aligned_cols=77 Identities=16% Similarity=0.011 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC-CCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEE
Q 027845 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAV 176 (218)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 176 (218)
.+.+.++-.+-.+-..+.++++.|-|=.+..+... .++.+++++.++|.++|.+-. -+++-++...+++.+. .++++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~-G~~~v 148 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA-GCAAV 148 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-CCCEe
Confidence 45678888888888888899998888888777655 467899999999999998643 3555667776666655 33444
No 61
>smart00642 Aamy Alpha-amylase domain.
Probab=66.93 E-value=9.8 Score=29.14 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=17.4
Q ss_pred cccchhchHHHHHhcCCCeeeEehh
Q 027845 184 SRDVEAEIVPTCSACRSSKLKIWSI 208 (218)
Q Consensus 184 ~~~~~~~l~~~~~~~g~i~i~~~sp 208 (218)
.....+.+++.|+++| |.++.=-+
T Consensus 68 t~~d~~~lv~~~h~~G-i~vilD~V 91 (166)
T smart00642 68 TMEDFKELVDAAHARG-IKVILDVV 91 (166)
T ss_pred CHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 3344468999999999 88875443
No 62
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=66.82 E-value=49 Score=29.62 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecCCC----------C--C--CHH---HHH-HHHHHHHHhCCcCEEecCccc
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT----------K--I--PIE---VTI-GELKKLVEEGKIKYIGLSEAC 160 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~----------~--~--~~~---~~~-~~l~~l~~~G~ir~iGvs~~~ 160 (218)
..+.+.+++.++..++ ++.+++++|.+.-... . . +.+ +.+ .+.+.|.+.|. +.+++|||.
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~fa 303 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWA 303 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeee
Confidence 3678888888887664 8999999987763211 0 0 112 122 34556778887 558898876
Q ss_pred H
Q 027845 161 A 161 (218)
Q Consensus 161 ~ 161 (218)
.
T Consensus 304 r 304 (449)
T PRK09058 304 R 304 (449)
T ss_pred c
Confidence 4
No 63
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=66.27 E-value=17 Score=33.94 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=48.9
Q ss_pred HHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC-cccHHHHHHHhcCCCeeEEcccCC
Q 027845 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 181 (218)
..+|.|++=+++.....+..+.+.+...+.+......+..+||- |.+++.+.++.+...++++|+.-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 45899999988666555556666623333333322357789985 789999999999999999999754
No 64
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=66.03 E-value=8.2 Score=31.49 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=44.5
Q ss_pred CCCcccCcceecccccCCCCCCCC--ChHHHHHHHHHH----HHCCCCeeeccCC---cCCC--cHHHHHHHHhcC----
Q 027845 12 SQGLEVSAQGLGCMAMSCLYGPPE--PEPDMIALIHHA----INSGITLLDTSDI---YGPY--TNEILVGKALKG---- 76 (218)
Q Consensus 12 ~~g~~vs~lglG~~~~~~~~~~~~--~~~~~~~~l~~A----~~~Gi~~~Dta~~---Yg~g--~se~~lg~~l~~---- 76 (218)
.+|+.+|.+||...+- -.+|+.+ .++++.++++.| .+.|||.|-.|.. |-.. .+++.+-+.++.
T Consensus 65 etgv~ipSmClSaHRR-fPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRR-FPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 5799999999998764 2344332 334555555555 5789999988842 2222 233334444433
Q ss_pred CCCCCEEEEecc
Q 027845 77 GMRERVELATKF 88 (218)
Q Consensus 77 ~~r~~~~I~tK~ 88 (218)
..+..+.++.-+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 235556655544
No 65
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=65.73 E-value=67 Score=26.34 Aligned_cols=101 Identities=16% Similarity=0.097 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEe-eecCCCC-CC----HHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCe
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTK-IP----IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 173 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~-lh~~d~~-~~----~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 173 (218)
.+.+.+.+.+++.+ +-|.+.||+-- --+|+.. .+ ++.+...++.+++.-.+ -|.+-+++++.++.+++...+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 35666666655554 56899999953 2334321 11 23456666677655232 489999999999999988744
Q ss_pred eEEcccCCcccccchhchHHHHHhcCCCeeeEeh
Q 027845 174 TAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 174 ~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~s 207 (218)
-+|=+ +..... +++++.++++| ..++..-
T Consensus 99 iINdi--s~~~~~--~~~~~l~~~~~-~~vV~m~ 127 (258)
T cd00423 99 IINDV--SGGRGD--PEMAPLAAEYG-APVVLMH 127 (258)
T ss_pred EEEeC--CCCCCC--hHHHHHHHHcC-CCEEEEC
Confidence 33333 222211 47899999999 6666653
No 66
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=65.23 E-value=63 Score=25.74 Aligned_cols=85 Identities=8% Similarity=-0.002 Sum_probs=59.3
Q ss_pred cceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHHHHHhc
Q 027845 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCSAC 198 (218)
Q Consensus 121 lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 198 (218)
.++.++-.|-+.. -++.+.+|.+...+. ..+=|-++...+.++++....+++|+..+..-- ....++.+.|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4666666664333 245667777776665 445555778888888888888999998766432 2224889999999
Q ss_pred CCCeeeEehhhH
Q 027845 199 RSSKLKIWSIIK 210 (218)
Q Consensus 199 g~i~i~~~spl~ 210 (218)
| +.+...+.+.
T Consensus 196 g-i~~~~~~~~~ 206 (229)
T cd00308 196 G-IRVMVHGTLE 206 (229)
T ss_pred C-CEEeecCCCC
Confidence 9 9998887653
No 67
>PRK09061 D-glutamate deacylase; Validated
Probab=65.17 E-value=69 Score=29.19 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=63.4
Q ss_pred HHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q 027845 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID 119 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~ 119 (218)
..++++.|++.|...|=+...|.++.+...+-+.++...+.+..|........ ..++.....++++.++.-...
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~------~~~~~~e~~av~~~i~lA~~~ 244 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS------NVDPRSSVDAYQELIAAAAET 244 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc------cCCchhHHHHHHHHHHHHHHh
Confidence 67888899999999998766675555556566666554455666666654321 011222233444444322211
Q ss_pred ccceEeeecCCC-CCCHHHHHHHHHHHHHhCCcCE
Q 027845 120 CIDLYYQHRVDT-KIPIEVTIGELKKLVEEGKIKY 153 (218)
Q Consensus 120 ~lDl~~lh~~d~-~~~~~~~~~~l~~l~~~G~ir~ 153 (218)
-.-+.+.|-... ..+..+.++.+++.+++|.--.
T Consensus 245 G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt 279 (509)
T PRK09061 245 GAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVT 279 (509)
T ss_pred CCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEE
Confidence 233566665432 2356778899999999985433
No 68
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=64.91 E-value=67 Score=27.83 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=73.7
Q ss_pred CChHHHHHHHHHHHHCC---CCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSG---ITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~G---i~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (218)
.+.++..+++....+.- +-.+|..+..+. --..+-+.+. ...-++|.+|.-... .....+.+.+-+++
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~~--~~piilV~NK~DLl~-----k~~~~~~~~~~l~~ 118 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFVG--GNPVLLVGNKIDLLP-----KSVNLSKIKEWMKK 118 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHhC--CCCEEEEEEchhhCC-----CCCCHHHHHHHHHH
Confidence 35555666665554321 234575444331 1122223332 356688999987543 12345666666666
Q ss_pred HHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHH
Q 027845 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIR 165 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 165 (218)
.++..|....+++.+.. -....++++++.+.++.+.+.+-.+|.+|..-..+-
T Consensus 119 ~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStli 171 (360)
T TIGR03597 119 RAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLI 171 (360)
T ss_pred HHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 67777765446665543 345678899999988877678888999998876543
No 69
>PRK08609 hypothetical protein; Provisional
Probab=64.83 E-value=1.2e+02 Score=28.17 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=79.1
Q ss_pred HHHHHHHHHHCCCCeeeccCCcC-----CCcHHHHHHHHh------cC-CCCCCEEEEeccCCCCCCCCCCCCCHHHHHH
Q 027845 40 MIALIHHAINSGITLLDTSDIYG-----PYTNEILVGKAL------KG-GMRERVELATKFGISFADGGKIRGDPAYVRA 107 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg-----~g~se~~lg~~l------~~-~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~ 107 (218)
..++++.|.+.|+..+=.++++. .|.+...+-+.+ ++ .+.=++++..-+...+ +....
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~----------~g~~d 420 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP----------DGSLD 420 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC----------Ccchh
Confidence 56699999999999987777752 222333232222 22 1111333333333221 11122
Q ss_pred HHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc---------c--cHHHHHHH-hcCCCeeE
Q 027845 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---------A--CAATIRRA-HAVHPITA 175 (218)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~---------~--~~~~l~~~-~~~~~~~~ 175 (218)
-.+..|+. .||+ +..+|++- ..+.+++++.+.++.+.|.+--||=-. + +.+.+.++ .+.. .+
T Consensus 421 ~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G--~~ 494 (570)
T PRK08609 421 YDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN--TA 494 (570)
T ss_pred hcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC--CE
Confidence 22224444 4555 67788652 345677888899998888877665332 1 11223333 2222 24
Q ss_pred EcccCCcccccchhchHHHHHhcCCCeeeE
Q 027845 176 VQLEWSLWSRDVEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 176 ~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~ 205 (218)
+|++-+.+.......++..|.+.| +.+..
T Consensus 495 lEINa~~~r~~~~~~~~~~~~e~G-v~i~i 523 (570)
T PRK08609 495 LELNANPNRLDLSAEHLKKAQEAG-VKLAI 523 (570)
T ss_pred EEEcCCccccCccHHHHHHHHHcC-CEEEE
Confidence 455444443233357889999999 65543
No 70
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=64.73 E-value=91 Score=26.77 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccC---------CcCC--CcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCH
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSD---------IYGP--YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDP 102 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~---------~Yg~--g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~ 102 (218)
..+.++..++++..-+.|+..|+.+. .||. -..++.+.+..+..++.++....-.+ . ...
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--~-------~~~ 90 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG--I-------GTV 90 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC--c-------cCH
Confidence 34678889999999999999999952 2221 13455565555444443333222111 1 223
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC---cccHHHHHHHh
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS---EACAATIRRAH 168 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs---~~~~~~l~~~~ 168 (218)
+.++.+.+ .|++.+-+.. | ....+.+.+..+..++.|.--...+. .++++.+.+..
T Consensus 91 ~dl~~a~~-----~gvd~iri~~-~----~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a 149 (333)
T TIGR03217 91 HDLKAAYD-----AGARTVRVAT-H----CTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHH-----CCCCEEEEEe-c----cchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHH
Confidence 44433332 3555444332 2 22334566677777777764443332 24555555443
No 71
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=64.29 E-value=69 Score=29.22 Aligned_cols=101 Identities=9% Similarity=0.042 Sum_probs=58.1
Q ss_pred HHHHHHHHhcC----CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHH-HHHH
Q 027845 66 NEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-VTIG 140 (218)
Q Consensus 66 se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~-~~~~ 140 (218)
+++.|-+++.+ .+.+-++|.+-.. ++-+-..++...+.++.+.++++.++.|....... ..-.
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~ 136 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADR 136 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHH
Confidence 56777777776 2334455555543 33344444445555555458899999987655422 2222
Q ss_pred HHHHHH--------------HhCCcCEEecCc------ccHHHHHHHhcCCCeeEEcc
Q 027845 141 ELKKLV--------------EEGKIKYIGLSE------ACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 141 ~l~~l~--------------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~q~ 178 (218)
+++.++ +.+.|--||.++ .+..+++++++...+.++.+
T Consensus 137 al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 137 TLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 332222 234566788775 25568888888866555543
No 72
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=63.94 E-value=15 Score=33.26 Aligned_cols=125 Identities=16% Similarity=0.103 Sum_probs=72.0
Q ss_pred HHHHHHHHCCCCee--eccCCcC--C------CcHHHHHHHHhcC----CCCCCEEEEeccCCCCCC--------C---C
Q 027845 42 ALIHHAINSGITLL--DTSDIYG--P------YTNEILVGKALKG----GMRERVELATKFGISFAD--------G---G 96 (218)
Q Consensus 42 ~~l~~A~~~Gi~~~--Dta~~Yg--~------g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~--------~---~ 96 (218)
+-++...+.|+..+ -||-.|. . |.-|. +..+-++ -.+.++++++=++..... + .
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT-~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYET-FLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHH-HHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHH-HHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 33566667788766 3444432 1 23333 3333333 347889999988754311 0 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC---CCe
Q 027845 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPI 173 (218)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~ 173 (218)
..+.+++.+++ |+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-.+.+.++++. +.+
T Consensus 185 ~vEvd~~ri~k-------R~~~g~ld~~-------~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl 250 (546)
T PF01175_consen 185 IVEVDPSRIEK-------RLEQGYLDEV-------TDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDL 250 (546)
T ss_dssp EEES-HHHHHH-------HHHTTSSSEE-------ESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SE
T ss_pred EEEECHHHHHH-------HHhCCCeeEE-------cCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCc
Confidence 23445555554 6667888874 257899999999999999999999999889999998887 456
Q ss_pred eEEcccCC
Q 027845 174 TAVQLEWS 181 (218)
Q Consensus 174 ~~~q~~~n 181 (218)
..-|...|
T Consensus 251 ~tDQTS~H 258 (546)
T PF01175_consen 251 VTDQTSAH 258 (546)
T ss_dssp E---SSTT
T ss_pred ccCCCccc
Confidence 77787664
No 73
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=63.57 E-value=25 Score=28.36 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCC-CcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGP-YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~-g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
++++..++.+.+.+.|..|+=|+..|+. |.+.+.+....+.. +.+ +..|....- .+.+...+-++.--.
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~--~~IKasGGI-------rt~~~a~~~i~aGA~ 203 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPR--VGVKASGGI-------RTLEDALAMIEAGAT 203 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCC--ceEEeeCCc-------CCHHHHHHHHHcCcc
Confidence 6677899999999999999999999964 44555443333222 222 233432211 357777777776667
Q ss_pred HcCCCc
Q 027845 115 RLDIDC 120 (218)
Q Consensus 115 ~Lg~~~ 120 (218)
++|+++
T Consensus 204 riGtS~ 209 (221)
T PRK00507 204 RLGTSA 209 (221)
T ss_pred eEccCc
Confidence 777653
No 74
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=63.46 E-value=63 Score=28.68 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCC-----------CCC-HH---HHHHHH-HHHHHhCCcCEEecCcccH
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----------KIP-IE---VTIGEL-KKLVEEGKIKYIGLSEACA 161 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-----------~~~-~~---~~~~~l-~~l~~~G~ir~iGvs~~~~ 161 (218)
.+.+.+.+.++..+ .|+.++|.+|.+-.... ..+ .+ +.++.. +.|.+.|. +.+|+|||..
T Consensus 201 QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 56777888887766 46789999986653211 011 11 344433 44666777 9999999876
No 75
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=63.10 E-value=93 Score=26.32 Aligned_cols=148 Identities=13% Similarity=0.071 Sum_probs=79.0
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCC--CcHHHHHHHHhcCC-CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~--g~se~~lg~~l~~~-~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (218)
.+.++..++++.+.+.|++.+.-+-.-.. -.-.+++. .+++. ...++.|+|-... +.+.+ .
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~-~i~~~~~~~~i~itTNG~l--------------l~~~~-~ 112 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIA-ALAALPGIRDLALTTNGYL--------------LARRA-A 112 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHH-HHHhcCCCceEEEEcCchh--------------HHHHH-H
Confidence 46778899999999999987764321000 01222222 23332 1234666555321 12222 2
Q ss_pred HHHHcCCCccceEeeecCCC--------CCCHHHHHHHHHHHHHhCC----cCEEecCcccHHHHHHHhcC---CCeeEE
Q 027845 112 SLKRLDIDCIDLYYQHRVDT--------KIPIEVTIGELKKLVEEGK----IKYIGLSEACAATIRRAHAV---HPITAV 176 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~--------~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~~~~~~ 176 (218)
.|...|++.+- +.+|..++ ...+++++++++.+++.|. |..+.+.+.+.+++.++++. .++.+.
T Consensus 113 ~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~ 191 (331)
T PRK00164 113 ALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLR 191 (331)
T ss_pred HHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEE
Confidence 34455655442 34444332 2357889999999999986 22333334555565555444 455555
Q ss_pred cccCCccccc---------chhchHHHHHhcC
Q 027845 177 QLEWSLWSRD---------VEAEIVPTCSACR 199 (218)
Q Consensus 177 q~~~n~~~~~---------~~~~l~~~~~~~g 199 (218)
-++|.+.... ...++.+.+++.|
T Consensus 192 ~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~ 223 (331)
T PRK00164 192 FIELMPTGEGNEWFRKHHLSGAEIRARLAERG 223 (331)
T ss_pred EEEeeECCCCcchhhhcCCCHHHHHHHHHhcc
Confidence 5555554331 1235777777775
No 76
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.88 E-value=62 Score=28.32 Aligned_cols=85 Identities=8% Similarity=0.098 Sum_probs=56.3
Q ss_pred EeeecCCC-----------CCCHHHHHHHHHHHHHhCCcCEE--------ecCcccHH---HHHHHhcCC------CeeE
Q 027845 124 YYQHRVDT-----------KIPIEVTIGELKKLVEEGKIKYI--------GLSEACAA---TIRRAHAVH------PITA 175 (218)
Q Consensus 124 ~~lh~~d~-----------~~~~~~~~~~l~~l~~~G~ir~i--------Gvs~~~~~---~l~~~~~~~------~~~~ 175 (218)
+.||.|++ ..+++++++++.+..++.. |.| || |-+++ +|.+++... +.-+
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceEE
Confidence 68999854 3467899999998765433 233 33 44444 555555555 6789
Q ss_pred EcccCCccccc--------chhchHHHHHhcCCCeeeEehhhHH
Q 027845 176 VQLEWSLWSRD--------VEAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 176 ~q~~~n~~~~~--------~~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
|-++||+.... ....+.+.++++| +.+......+.
T Consensus 310 NLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~g-i~vtiR~s~G~ 352 (371)
T PRK14461 310 NLIPWNPVPGTPLGRSERERVTTFQRILTDYG-IPCTVRVERGV 352 (371)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCC-ceEEEeCCCCc
Confidence 99999986431 1126677789999 88877766543
No 77
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.09 E-value=85 Score=27.16 Aligned_cols=91 Identities=12% Similarity=0.018 Sum_probs=60.9
Q ss_pred CCCEEEEeccCCCCCC--------CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh-C
Q 027845 79 RERVELATKFGISFAD--------GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE-G 149 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~--------~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~-G 149 (218)
|..+.|+|-+|-.... +.....+...+..++-..-+.++.....++++---++...++.+.++++.+.+. |
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~ 183 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDA 183 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhh
Confidence 4558888877654322 244567889999998776666665555666666566666778899999888775 2
Q ss_pred ---CcCEEecCcccH-HHHHHHhc
Q 027845 150 ---KIKYIGLSEACA-ATIRRAHA 169 (218)
Q Consensus 150 ---~ir~iGvs~~~~-~~l~~~~~ 169 (218)
.-+.|-||+... ..+.++.+
T Consensus 184 ~~~~~r~itvST~G~~~~i~~l~~ 207 (342)
T PRK14465 184 FNLGAKRITISTSGVVNGIRRFIE 207 (342)
T ss_pred hcCCCCeEEEeCCCchHHHHHHHh
Confidence 346788887554 45666554
No 78
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=61.88 E-value=57 Score=23.47 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=43.3
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEeeecCCCC-CCHHHHHHHHHHHHHh
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~ 148 (218)
+|=.+.|+-|++... ..+..+++.++++++... ..-.|++++..+... .+..++.+.|.+|...
T Consensus 44 ~R~G~~VsKK~~~~A-------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKRA-------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcch-------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 455577777755333 458888888888887553 234699999998543 4666666666666544
No 79
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=61.46 E-value=38 Score=26.25 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=62.9
Q ss_pred CCCCeeeccCCcC-------CCcHHHHHHHHhcCCCCCCEEEEeccCCCCCC-C---CCCCCCHHHHHHHHHHHHHHcCC
Q 027845 50 SGITLLDTSDIYG-------PYTNEILVGKALKGGMRERVELATKFGISFAD-G---GKIRGDPAYVRACCEASLKRLDI 118 (218)
Q Consensus 50 ~Gi~~~Dta~~Yg-------~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~-~---~~~~~~~~~i~~~~~~sL~~Lg~ 118 (218)
.+|-++||-..-- .|..+..+-+.+++ -|=++.|.++--..|.. | -....++..+..-+++.|++-+.
T Consensus 79 ~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~ 157 (187)
T COG3172 79 NKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNI 157 (187)
T ss_pred CceEEEeccHHHHHHHHHHHcccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCC
Confidence 4899999965421 12344455566655 56777777664433322 2 11233677788889999998876
Q ss_pred CccceEeeecCCCCCCHHHHHHHHHHHHHhC
Q 027845 119 DCIDLYYQHRVDTKIPIEVTIGELKKLVEEG 149 (218)
Q Consensus 119 ~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G 149 (218)
.| +.|..++..+....++++.+++..++
T Consensus 158 ~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 158 PF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred cE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 65 45566666667778999999988776
No 80
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=61.36 E-value=96 Score=25.91 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHCC-CCeeec---cCC-----cCCCcHHHHHHHHhcCCCC-CCEEEEeccCCCCCCCCCCCCCHHHH
Q 027845 36 PEPDMIALIHHAINSG-ITLLDT---SDI-----YGPYTNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYV 105 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~G-i~~~Dt---a~~-----Yg~g~se~~lg~~l~~~~r-~~~~I~tK~~~~~~~~~~~~~~~~~i 105 (218)
+.++..++.+.+.+.| +..||- +++ +.-+...+.+-+.++.+.+ -++-|..|+.+.. +.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~ 171 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV----------TDI 171 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc----------hhH
Confidence 4566788888888888 899976 111 1122445666666655221 2677889987432 122
Q ss_pred HHHHHHHHHHcCCCccceEe-eecC--CCC--C------------C--HHHHHHHHHHHHHhCCcCEEecCc-ccHHHHH
Q 027845 106 RACCEASLKRLDIDCIDLYY-QHRV--DTK--I------------P--IEVTIGELKKLVEEGKIKYIGLSE-ACAATIR 165 (218)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~-lh~~--d~~--~------------~--~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~ 165 (218)
. .+-+.++..|.+.+++.- .+.. +.. . + ..-.++.+.++++.=.+-=||+.. .+++...
T Consensus 172 ~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~ 250 (301)
T PRK07259 172 V-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAI 250 (301)
T ss_pred H-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 2 334456778877766531 1111 000 0 0 011466667777665677888888 5788888
Q ss_pred HHhcCCCeeEEcccCCccc-cc----chhchHHHHHhcC
Q 027845 166 RAHAVHPITAVQLEWSLWS-RD----VEAEIVPTCSACR 199 (218)
Q Consensus 166 ~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~g 199 (218)
+++... .+.+|+-=-++. +. ..+++-++++++|
T Consensus 251 ~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 251 EFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred HHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcC
Confidence 888754 577776322222 21 2236667777777
No 81
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=61.04 E-value=46 Score=25.38 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEec-cCCCCCCCCCCCCCHHHHHHHHHHH
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATK-FGISFADGGKIRGDPAYVRACCEAS 112 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK-~~~~~~~~~~~~~~~~~i~~~~~~s 112 (218)
..+++...-+++.|-+.||.+|=.|+.|| .+-..+-+.+.. . =++++.|. .+... .+...+.+.+++-
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG--~tA~k~lemveg-~-lkvVvVthh~Gf~e-------~g~~e~~~E~~~~ 78 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTG--YTALKALEMVEG-D-LKVVVVTHHAGFEE-------KGTQEMDEEVRKE 78 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEeccc--HHHHHHHHhccc-C-ceEEEEEeeccccc-------CCceecCHHHHHH
Confidence 34556677788888999999999999998 454444444422 1 23555544 33322 2344567778888
Q ss_pred HHHcCCC
Q 027845 113 LKRLDID 119 (218)
Q Consensus 113 L~~Lg~~ 119 (218)
|+..|.+
T Consensus 79 L~erGa~ 85 (186)
T COG1751 79 LKERGAK 85 (186)
T ss_pred HHHcCce
Confidence 8888853
No 82
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=60.44 E-value=74 Score=28.25 Aligned_cols=85 Identities=11% Similarity=-0.090 Sum_probs=59.5
Q ss_pred ceEeeecCCCCCCHHHHHHHHHHHHHh------CCcCEEecCcccHHHHHHHhcCCCeeEEcccCCccccc-chhchHHH
Q 027845 122 DLYYQHRVDTKIPIEVTIGELKKLVEE------GKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPT 194 (218)
Q Consensus 122 Dl~~lh~~d~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~ 194 (218)
++ ++..|=+..+.++.++.+.+|++. ..=-..+=|-++.+.+.++++....+++|+..+-.--- ...++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 677775444434567777777765 23234566668899999999988889999987754322 22589999
Q ss_pred HHhcCCCeeeEehh
Q 027845 195 CSACRSSKLKIWSI 208 (218)
Q Consensus 195 ~~~~g~i~i~~~sp 208 (218)
|+++| +.+...+.
T Consensus 344 A~~~G-i~~~~g~~ 356 (408)
T TIGR01502 344 CKANG-MGAYVGGT 356 (408)
T ss_pred HHHcC-CEEEEeCC
Confidence 99999 98877443
No 83
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=60.19 E-value=1.1e+02 Score=26.16 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 027845 39 DMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (218)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (218)
.-+++++.+.+.|| .+|.|+. +++.+-+++.- .+..+|.|......- .+..++--.++++...++=|+
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al----~~h~RNl~D~qlkaI~~~gGv 217 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARAL----VDHPRNLSDEQLKAIAETGGV 217 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhc----cCCCCCCCHHHHHHHHhcCCE
Confidence 37899999999998 6899874 55666666643 555677777654331 233444445556666666554
Q ss_pred CccceEeeecC-----CCCCCHHHHHHHHHHHHHhCCcCEEecCc
Q 027845 119 DCIDLYYQHRV-----DTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (218)
Q Consensus 119 ~~lDl~~lh~~-----d~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 158 (218)
|.+.++-.. ....++++..+.++..++.+=+.++|+.+
T Consensus 218 --Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 218 --IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred --EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 444433322 23568899999999999999999999986
No 84
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=60.15 E-value=53 Score=27.55 Aligned_cols=101 Identities=9% Similarity=0.006 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEcc-
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQL- 178 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~- 178 (218)
++.+ -+..+-+.|.++|+++|++-.++.|.......+.++.+..+.+...++...+. .+...++++++... +.+.+
T Consensus 23 ~s~e-~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~-~~v~i~ 99 (287)
T PRK05692 23 IPTA-DKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGA-DEVAVF 99 (287)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCC-CEEEEE
Confidence 3444 34556677999999999998666554332333345566665544445555554 47778888877622 22222
Q ss_pred -cCCcc------ccc------chhchHHHHHhcCCCeee
Q 027845 179 -EWSLW------SRD------VEAEIVPTCSACRSSKLK 204 (218)
Q Consensus 179 -~~n~~------~~~------~~~~l~~~~~~~g~i~i~ 204 (218)
..|.. ... ...+.+++++++| ..+.
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g-~~v~ 137 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAG-VRVR 137 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CEEE
Confidence 22211 111 1136889999999 7664
No 85
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=60.00 E-value=1.1e+02 Score=26.50 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCCEEEEeccCCCCCC--------CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeec-CCCCCCHHHHHHHHHHHHHh-
Q 027845 79 RERVELATKFGISFAD--------GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTKIPIEVTIGELKKLVEE- 148 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~--------~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d~~~~~~~~~~~l~~l~~~- 148 (218)
|..++|+|-++-.... +.....+++.+..++....+.++. .++-+.+-. -++....+.+.++++.+.+.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~ 178 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQDL 178 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhccc
Confidence 6668888777654322 122357889999999988877753 356444444 55666778899999998875
Q ss_pred CC-cCEEecCcc-cHHHHHHHhcC
Q 027845 149 GK-IKYIGLSEA-CAATIRRAHAV 170 (218)
Q Consensus 149 G~-ir~iGvs~~-~~~~l~~~~~~ 170 (218)
|. .|.|-+|+. -+..+.++.+.
T Consensus 179 ~i~~r~itvST~G~~~~i~~L~~~ 202 (345)
T PRK14457 179 GIGQRRITVSTVGVPKTIPQLAEL 202 (345)
T ss_pred CCccCceEEECCCchhhHHHHHhh
Confidence 33 256666664 34456666554
No 86
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=59.76 E-value=1.2e+02 Score=26.29 Aligned_cols=149 Identities=11% Similarity=-0.025 Sum_probs=84.8
Q ss_pred HHHHHHHH-HCCCCeeeccCCcCCC-cHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 027845 41 IALIHHAI-NSGITLLDTSDIYGPY-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (218)
Q Consensus 41 ~~~l~~A~-~~Gi~~~Dta~~Yg~g-~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (218)
.+.++.++ +.|++.|=.--.-.+- ...+.+ +++++.-.+++.|..=.... .+++.-.+ +-+.|+.
T Consensus 146 ~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v-~~~re~~g~~~~l~~DaN~~--------~~~~~A~~-~~~~l~~--- 212 (368)
T TIGR02534 146 IAEAEERIEEKRHRSFKLKIGARDPADDVAHV-VAIAKALGDRASVRVDVNAA--------WDERTALH-YLPQLAD--- 212 (368)
T ss_pred HHHHHHHHHhcCcceEEEEeCCCCcHHHHHHH-HHHHHhcCCCcEEEEECCCC--------CCHHHHHH-HHHHHHh---
Confidence 34455555 4799998653211000 122333 44444223444443322211 34443222 2222333
Q ss_pred CccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHHHHH
Q 027845 119 DCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCS 196 (218)
Q Consensus 119 ~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~ 196 (218)
+++.++-.|-+.. -++.+.+|++...+. ..|=|-++...+.++++....+++|+...-.-- .....+...|+
T Consensus 213 --~~~~~iEeP~~~~----d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~ 286 (368)
T TIGR02534 213 --AGVELIEQPTPAE----NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAE 286 (368)
T ss_pred --cChhheECCCCcc----cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHH
Confidence 3455566553322 366667777776665 677778899999999888888999987665322 12248999999
Q ss_pred hcCCCeeeEehhh
Q 027845 197 ACRSSKLKIWSII 209 (218)
Q Consensus 197 ~~g~i~i~~~spl 209 (218)
++| +.++..+.+
T Consensus 287 ~~g-i~~~~~~~~ 298 (368)
T TIGR02534 287 AAG-IALYGGTML 298 (368)
T ss_pred HcC-Cceeeecch
Confidence 999 888876544
No 87
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=59.61 E-value=1.1e+02 Score=26.03 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCC----------cCCC--cHHHHHHHHhcCC-CCCCEEEEeccCCCCCCCCCCCCCH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDI----------YGPY--TNEILVGKALKGG-MRERVELATKFGISFADGGKIRGDP 102 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~----------Yg~g--~se~~lg~~l~~~-~r~~~~I~tK~~~~~~~~~~~~~~~ 102 (218)
++++..++.+.+.+.|+..||.--. +|.. ..-+.+.+.++.. ..-++-|+.|+...+. .+.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~------~~~ 148 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA------PEH 148 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc------CCc
Confidence 5566777777788899999995322 1110 1233344433331 0113457777643221 111
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCCCCCH--HHHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCCCeeEEccc
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 179 (218)
... ..+-+.++..|. |.+.+|.-...... ..-|+.+.++++.=.|-=||... .+++...++++....+.+|+-
T Consensus 149 ~~~-~~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 149 RNC-VEIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred chH-HHHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 111 123334567775 66677864322111 12477788888876777777766 588888888877666777763
No 88
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=59.28 E-value=1.3e+02 Score=26.88 Aligned_cols=155 Identities=10% Similarity=0.007 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHH-CCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAIN-SGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 36 ~~~~~~~~l~~A~~-~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
++++..+..+.+++ .|++.|=.--.-.++......=+++++.- +++.|..=.... .+.+. ..+.++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~-~d~~L~vDAN~~--------wt~~~----Ai~~~~ 246 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRF-PQARITLDPNGA--------WSLDE----AIALCK 246 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhC-CCCeEEEECCCC--------CCHHH----HHHHHH
Confidence 34555566666665 59998864321111112222234444422 344333322211 23333 223333
Q ss_pred HcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccccchhchHH
Q 027845 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVP 193 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~ 193 (218)
+|. ++ +.++-.|-+..+..+-++.+.++++.-.|- ..|=+.++...++++++....+++|......--.....+.+
T Consensus 247 ~Le-~~--~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~ 323 (441)
T TIGR03247 247 DLK-GV--LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQ 323 (441)
T ss_pred Hhh-hh--hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHH
Confidence 443 22 445665543222112367777887766553 45666788999999998888888888764221112248999
Q ss_pred HHHhcCCCeeeEeh
Q 027845 194 TCSACRSSKLKIWS 207 (218)
Q Consensus 194 ~~~~~g~i~i~~~s 207 (218)
.|+++| +.+..++
T Consensus 324 lA~a~G-i~v~~h~ 336 (441)
T TIGR03247 324 MCHDWG-LTWGSHS 336 (441)
T ss_pred HHHHcC-CEEEEeC
Confidence 999999 8887764
No 89
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=58.91 E-value=1.2e+02 Score=26.11 Aligned_cols=153 Identities=11% Similarity=0.050 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCC--------cHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPY--------TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRA 107 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g--------~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~ 107 (218)
+.++..+.+..+.+.|++.|=.--....+ ..+...=+++++.-.+++.|..=.... .+++.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~--------~~~~~--- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGR--------VSKPM--- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC--------CCHHH---
Confidence 44556677777888999988764322100 112223344444223344444333221 33433
Q ss_pred HHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCccc-c
Q 027845 108 CCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWS-R 185 (218)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~-~ 185 (218)
..+.++.|. .+++.++-.|=+.. -++.+.+|++..-+. +.|=|.++...+..+++...++++|+.....- -
T Consensus 192 -A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGi 264 (352)
T cd03325 192 -AKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGI 264 (352)
T ss_pred -HHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCH
Confidence 233334442 24555666553322 367788888776664 56677789999999988877899999865442 1
Q ss_pred cchhchHHHHHhcCCCeeeEeh
Q 027845 186 DVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 186 ~~~~~l~~~~~~~g~i~i~~~s 207 (218)
....++.+.|+++| +.++..+
T Consensus 265 t~~~~~~~lA~~~g-i~~~~h~ 285 (352)
T cd03325 265 TELKKIAAMAEAYD-VALAPHC 285 (352)
T ss_pred HHHHHHHHHHHHcC-CcEeccC
Confidence 22248999999999 8887665
No 90
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=58.87 E-value=66 Score=23.19 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=45.8
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC---CccceEeeecCCCC-CCHHHHHHHHHHHHHh
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI---DCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~ 148 (218)
+|=-+.|+-|++... ..+..+++.+++.++.+.. ...|++++..+... .+..++.+.|..+.+.
T Consensus 47 ~R~G~~VsKK~~~~A-------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA-------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch-------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 344466777755333 5688899999988887642 35799999998654 5777888888887665
No 91
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=58.76 E-value=87 Score=24.55 Aligned_cols=148 Identities=10% Similarity=-0.014 Sum_probs=84.0
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
|++++.++++.+++.|+...|.-...- -..=..+|+.+ .++++++.--. ...+.+++.+......
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~iG~~w---~~gei~va~~~-----------~a~~~~~~~l~~l~~~ 74 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELIEKGL-MAGMGVVGKLF---EDGELFLPHVM-----------MSADAMLAGIKVLTPE 74 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHH---cCCCccHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 678899999999999998777442111 01222344443 23344331111 2244455555555555
Q ss_pred cCCC----ccceEeeecCCCCCCHHHHHHHHHHHHHhCC-cCEEecCcccHHHHHHHhcCCCeeEEcccCCccccc-chh
Q 027845 116 LDID----CIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEA 189 (218)
Q Consensus 116 Lg~~----~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 189 (218)
+... .---+++-.+..+..--+..=.-.-++..|. +.++|. +.+++.+.+.+...+|+++.+.++..... ...
T Consensus 75 ~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~ 153 (197)
T TIGR02370 75 MEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQK 153 (197)
T ss_pred hhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccccCHHHHH
Confidence 5421 1123344444333222233333334556675 456774 56788888888888899998888766554 235
Q ss_pred chHHHHHhcC
Q 027845 190 EIVPTCSACR 199 (218)
Q Consensus 190 ~l~~~~~~~g 199 (218)
++++.+++.|
T Consensus 154 ~~i~~l~~~~ 163 (197)
T TIGR02370 154 DINDKLKEEG 163 (197)
T ss_pred HHHHHHHHcC
Confidence 7888888886
No 92
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=57.35 E-value=37 Score=26.75 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCc----HHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYT----NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~----se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (218)
++++...+.+.|.+.|..++=|+..|..+. .-+.+.+.++ .. +..|..... .+.+...+-++.
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aGGi-------kt~~~~l~~~~~ 195 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAGGI-------RTLEDALAMIEA 195 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeCCC-------CCHHHHHHHHHh
Confidence 457789999999999999999998886321 2244555553 22 344443222 256667776666
Q ss_pred HHHHcCC
Q 027845 112 SLKRLDI 118 (218)
Q Consensus 112 sL~~Lg~ 118 (218)
-..|+|+
T Consensus 196 g~~riG~ 202 (203)
T cd00959 196 GATRIGT 202 (203)
T ss_pred ChhhccC
Confidence 6677765
No 93
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=57.22 E-value=1.3e+02 Score=26.03 Aligned_cols=152 Identities=9% Similarity=0.018 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCC--cHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPY--TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g--~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (218)
+.++..+.++.+.+.|++.|-.- .++.. ......=+++++.-.+++.|..=... ..+.+...+ +-+.|
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~--------~~~~~~A~~-~~~~l 212 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGAH--------WYSRADALR-LGRAL 212 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECCC--------CcCHHHHHH-HHHHh
Confidence 45667788888899999998763 22211 11111223444422234433332221 133433222 22223
Q ss_pred HHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCccc-HHHHHHHhcCCCeeEEcccCCcccc-cchhc
Q 027845 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEAC-AATIRRAHAVHPITAVQLEWSLWSR-DVEAE 190 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 190 (218)
+.+ ++.++-.|- +..+ ++.+.+++++-.+- ..|=+-++ +.++.++++....+++|+..+..-- ....+
T Consensus 213 ~~~-----~l~~iEeP~---~~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ 283 (368)
T cd03329 213 EEL-----GFFWYEDPL---REAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMK 283 (368)
T ss_pred hhc-----CCCeEeCCC---Cchh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHH
Confidence 333 444555442 2222 46677888875554 23444467 8889999888889999998776422 22248
Q ss_pred hHHHHHhcCCCeeeEeh
Q 027845 191 IVPTCSACRSSKLKIWS 207 (218)
Q Consensus 191 l~~~~~~~g~i~i~~~s 207 (218)
+.+.|+++| +.+...+
T Consensus 284 ia~~a~~~g-i~~~~h~ 299 (368)
T cd03329 284 TAHLAEAFG-LDVELHG 299 (368)
T ss_pred HHHHHHHcC-CEEEEEC
Confidence 999999999 8886544
No 94
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=57.19 E-value=1.1e+02 Score=25.34 Aligned_cols=71 Identities=10% Similarity=-0.063 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHHc------CCCccceEeeecCCCCC-CHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC
Q 027845 99 RGDPAYVRACCEASLKRL------DIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~L------g~~~lDl~~lh~~d~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 170 (218)
+.+.++-.+-.+-+.+.. +++.+-|=.+..+..-. +..|++++-+.|.++|-+-. --++-++-..+++.+.
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~a~rLed~ 157 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVL-PYINADPMLAKHLEDI 157 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHHc
Confidence 455666555555555555 56666665665554443 56799999999999986432 2233344444444443
No 95
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=57.13 E-value=1.1e+02 Score=25.19 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceE-eeecCCCC-CCHH-H---HHHHHHHHHHh-CCcCEEecCcccHHHHHHHhcCCC
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLY-YQHRVDTK-IPIE-V---TIGELKKLVEE-GKIKYIGLSEACAATIRRAHAVHP 172 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~-~lh~~d~~-~~~~-~---~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 172 (218)
.+++.+.+.+++.+ +-|.++||+- .--+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++.+++...
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 45666666655543 5589999993 12234322 2222 2 55566666655 43 48888999999999998865
Q ss_pred eeEEcccCCcccccchhchHHHHHhcCCCeeeEe
Q 027845 173 ITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIW 206 (218)
Q Consensus 173 ~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~ 206 (218)
.-+|-+.. .. .+++++.++++| ..++++
T Consensus 97 ~iINsis~--~~---~~~~~~l~~~~~-~~vV~m 124 (257)
T TIGR01496 97 DIINDVSG--GQ---DPAMLEVAAEYG-VPLVLM 124 (257)
T ss_pred CEEEECCC--CC---CchhHHHHHHcC-CcEEEE
Confidence 54444432 22 257889999999 776664
No 96
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=56.91 E-value=1.1e+02 Score=25.22 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccC
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSD 59 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~ 59 (218)
.+.++..++++...+.|+..++...
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3567899999999999999999864
No 97
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=56.31 E-value=1.3e+02 Score=25.62 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
+.++..+.++...+.|++.|=.-- +. ..+...=+++++.. .++-|..=.... .+++..+ . -+.|+.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~vDaN~~--------~~~~~a~-~-~~~l~~ 197 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVIDANES--------YDLQDFP-R-LKELDR 197 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEEECCCC--------CCHHHHH-H-HHHHhh
Confidence 445577777888899999885432 11 12222334454522 233333222211 3444431 1 233333
Q ss_pred cCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHH
Q 027845 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 193 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~ 193 (218)
.++.++-.|=+ .+-++.+.++++.-.+. ..|=|.++...+.++++....+++|+..+-.-- ....++.+
T Consensus 198 -----~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~ 268 (324)
T TIGR01928 198 -----YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIE 268 (324)
T ss_pred -----CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHH
Confidence 35556665532 23457788888776664 667788999999999999889999987665432 22258999
Q ss_pred HHHhcCCCeeeEehhh
Q 027845 194 TCSACRSSKLKIWSII 209 (218)
Q Consensus 194 ~~~~~g~i~i~~~spl 209 (218)
.|+++| +.++..+.+
T Consensus 269 ~A~~~g-i~~~~~~~~ 283 (324)
T TIGR01928 269 TCREHG-AKVWIGGML 283 (324)
T ss_pred HHHHcC-CeEEEcceE
Confidence 999999 888765544
No 98
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=56.09 E-value=1.3e+02 Score=26.63 Aligned_cols=108 Identities=20% Similarity=0.161 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHCCCCe-eeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCC---CCCCCCCCCHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITL-LDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISF---ADGGKIRGDPAYVRACCEA 111 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~-~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~---~~~~~~~~~~~~i~~~~~~ 111 (218)
+.+.-.+-++.|++.|-.. .|.|. .| .-.++=.+.++. ..+-|.|---+.. ..+...+.+++.+.+.+++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg--dl~~iR~~il~~---s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~ 148 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG--DLDEIRKAILDA---VPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEK 148 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC--CHHHHHHHHHHc---CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHH
Confidence 5555667789999999874 47664 23 233322233322 1122222100000 0001245778888888887
Q ss_pred HHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHH
Q 027845 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAA 162 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 162 (218)
..+ +-+|.+-+|.. -+.+.++.+++.|++ .|+.+-...
T Consensus 149 qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R~--~giVSRGGs 186 (423)
T TIGR00190 149 QAK----DGVDFMTIHAG-------VLLEYVERLKRSGRI--TGIVSRGGA 186 (423)
T ss_pred HHH----hCCCEEEEccc-------hhHHHHHHHHhCCCc--cCeecCcHH
Confidence 765 34788999975 267888899998864 455543333
No 99
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=55.95 E-value=88 Score=27.53 Aligned_cols=81 Identities=5% Similarity=-0.031 Sum_probs=57.9
Q ss_pred cceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHHHHHhc
Q 027845 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCSAC 198 (218)
Q Consensus 121 lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 198 (218)
.++.++-.|-+. +-++.+.+|++.-.+. +.|=|-++...++++++....+++|+...-.-- .....+.+.|+++
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 455555555322 2356777888776665 667777899999999999889999997665421 2225899999999
Q ss_pred CCCeeeEe
Q 027845 199 RSSKLKIW 206 (218)
Q Consensus 199 g~i~i~~~ 206 (218)
| +.+...
T Consensus 308 g-i~~~~h 314 (404)
T PRK15072 308 Q-VRTGSH 314 (404)
T ss_pred C-Cceeec
Confidence 9 887764
No 100
>PRK07094 biotin synthase; Provisional
Probab=55.83 E-value=66 Score=27.14 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCC-CCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r-~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
+.++..+.++.+.+.|++.|--......-...+.+-+.++.+.+ ..+.+..-.+ . .+.+.+ +.|+
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g--~-------~~~e~l-----~~Lk 136 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLG--E-------RSYEEY-----KAWK 136 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecC--C-------CCHHHH-----HHHH
Confidence 67778888899999999877433110000122334444444222 3443332221 1 223322 2455
Q ss_pred HcCCCccceEeeec--------CCCCCCHHHHHHHHHHHHHhCCcC----EEecCcccHHHHHHHhcC
Q 027845 115 RLDIDCIDLYYQHR--------VDTKIPIEVTIGELKKLVEEGKIK----YIGLSEACAATIRRAHAV 170 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~--------~d~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~l~~~~~~ 170 (218)
+.|.+.+-+ -+.. .......++.+++++.+++.|.-- -+|+...+.+.+.+.++.
T Consensus 137 ~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 137 EAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred HcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 667654432 1111 112356788999999999999632 256666676666554443
No 101
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=55.76 E-value=46 Score=26.62 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhc---CCCeeEE
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA---VHPITAV 176 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~ 176 (218)
++.+ .+..+-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++......++..++ ...++.+
T Consensus 11 ~~~~-~k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTE-EKLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HH-HHHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHH-HHHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 3444 44555667999999998887 332223333455556555555 4444555555666666443 2344444
Q ss_pred cccCCccc--------------ccchhchHHHHHhcCCCee
Q 027845 177 QLEWSLWS--------------RDVEAEIVPTCSACRSSKL 203 (218)
Q Consensus 177 q~~~n~~~--------------~~~~~~l~~~~~~~g~i~i 203 (218)
.+..+.-+ .+...+.+.++++.| ..+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g-~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELG-YEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTT-SEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcC-Cce
Confidence 44333322 111237788899998 666
No 102
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=55.25 E-value=1.3e+02 Score=27.60 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=68.8
Q ss_pred HHHHHHHHhcC----CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCC-HHHHHH
Q 027845 66 NEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIG 140 (218)
Q Consensus 66 se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-~~~~~~ 140 (218)
+++.|-+++++ .+.+-++|.|-+.... -.-+.+.+.+.++ +++ .++++.+|.|..... ....-.
T Consensus 69 g~~kL~~~I~~~~~~~~P~~I~V~tTC~~ei-----IGDDi~~v~~~~~---~~~---~~pVi~v~t~~f~g~~~~g~~~ 137 (513)
T CHL00076 69 SQEKVVDNITRKDKEERPDLIVLTPTCTSSI-----LQEDLQNFVDRAS---IES---DSDVILADVNHYRVNELQAADR 137 (513)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEECCCCchhh-----hhcCHHHHHHHhh---ccc---CCCEEEeCCCCCcccHHHHHHH
Confidence 55666666655 3455566666654322 1122333333322 222 368999999966543 222212
Q ss_pred HHHHHH------------------HhCCcCEEecCc------ccHHHHHHHhcCCCeeEEcc----------------cC
Q 027845 141 ELKKLV------------------EEGKIKYIGLSE------ACAATIRRAHAVHPITAVQL----------------EW 180 (218)
Q Consensus 141 ~l~~l~------------------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~q~----------------~~ 180 (218)
+++.++ ..++|--||.++ .+..+++++++...+.++.+ .+
T Consensus 138 ~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~ 217 (513)
T CHL00076 138 TLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWF 217 (513)
T ss_pred HHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcE
Confidence 232222 234566787664 45678888888866555522 22
Q ss_pred Cccc-ccchhchHHHHHh-cCCCeeeEehhh
Q 027845 181 SLWS-RDVEAEIVPTCSA-CRSSKLKIWSII 209 (218)
Q Consensus 181 n~~~-~~~~~~l~~~~~~-~g~i~i~~~spl 209 (218)
|+.. +.....+.++.++ .| ++++...|+
T Consensus 218 NIvl~~~~g~~~A~~Le~~fg-iP~i~~~Pi 247 (513)
T CHL00076 218 NIVPYREVGLMTAKYLEKEFG-MPYISTTPM 247 (513)
T ss_pred EEEechhhhHHHHHHHHHHhC-CCeEeeccC
Confidence 3322 2222345566654 45 877776776
No 103
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=55.10 E-value=1.1e+02 Score=24.89 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccCCcCCC---cHHHHHHHHhcC--------------CCCCCEEEEeccCCCCCCC-
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSDIYGPY---TNEILVGKALKG--------------GMRERVELATKFGISFADG- 95 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g---~se~~lg~~l~~--------------~~r~~~~I~tK~~~~~~~~- 95 (218)
+.+.++..++++.|.++|++-+=..++|-.| .+++.+.+.+.+ .|..+++|.--+--....+
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEIrIt~~vl~~l~~g~ 95 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQEIRITGDVLDDLDKGI 95 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCceEEEchHHHHHHhcCc
Confidence 3467889999999999999966444454443 344444444433 3456666654332111110
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHcC-CCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC
Q 027845 96 ---------GKIRGDPAYVRACCEASLKRLD-IDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (218)
Q Consensus 96 ---------~~~~~~~~~i~~~~~~sL~~Lg-~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs 157 (218)
-...++-.++-+-.++.+-.|. .+++- .+..|+....+.+-...|.+|+++|--..+--|
T Consensus 96 I~tindskYlLIEF~~~~v~~ya~~lf~elq~kGi~P--IIAHPERn~~i~kn~~~lyeLid~ga~sQvts~ 165 (254)
T COG4464 96 ILTINDSKYLLIEFPMNHVPRYADQLFFELQSKGIIP--IIAHPERNRAIQKNPYLLYELIDKGAYSQVTSS 165 (254)
T ss_pred cccccccceEEEEccCCcchhhHHHHHHHHHHCCcee--eeechhhHHHHHhChHHHHHHHhcccceeechH
Confidence 0112333334444444443333 12222 233355555556667778888888876665443
No 104
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=54.10 E-value=1.3e+02 Score=26.13 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeee
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQH 127 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh 127 (218)
.+.+.+++.++..+ .++.+++.+|.+.
T Consensus 167 qt~~~~~~~l~~~~-~l~~~~is~y~l~ 193 (370)
T PRK06294 167 QSLSDFIVDLHQAI-TLPITHISLYNLT 193 (370)
T ss_pred CCHHHHHHHHHHHH-ccCCCeEEEeeeE
Confidence 56777777777655 3677777777655
No 105
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=53.70 E-value=93 Score=25.03 Aligned_cols=94 Identities=10% Similarity=0.050 Sum_probs=53.2
Q ss_pred CCeeec-cCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCC
Q 027845 52 ITLLDT-SDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVD 130 (218)
Q Consensus 52 i~~~Dt-a~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d 130 (218)
.+.++. +..|.. -+++.+.+|.++ .++++..+-|+....+.........+.+.+.+-++++-|| +++..+++..|.
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~Pp 95 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPILFQFPP 95 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE--T
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEEEEEcCC
Confidence 455544 334543 478889999887 5688999999875542100011235566466666999998 899999999997
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 027845 131 TKIPIEVTIGELKKLVEE 148 (218)
Q Consensus 131 ~~~~~~~~~~~l~~l~~~ 148 (218)
....-.+.++.|..+.+.
T Consensus 96 sf~~~~~~~~~l~~~l~~ 113 (230)
T PF01904_consen 96 SFRFTPENLERLDAFLDR 113 (230)
T ss_dssp T--S-HHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhh
Confidence 654555666666666555
No 106
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=53.69 E-value=93 Score=23.34 Aligned_cols=64 Identities=9% Similarity=0.046 Sum_probs=45.2
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEeeecCCCC-CCHHHHHHHHHHHHHh
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~ 148 (218)
+|=-+.|+-|++... ..+..+++.++++++.+. ....|++++..+... .+..++.+.|..|.+.
T Consensus 48 ~RlG~sVSKKvg~~A-------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRA-------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcc-------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455577777875333 458888888888887652 334599999887643 5778888888887766
No 107
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=53.66 E-value=1.1e+02 Score=24.06 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
...++..++++.|.+.|+.-+-+.+.+- +. ..+.++. ..+.+.+=.+.... ....+....+++++++
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~v----~~-~~~~l~~---~~~~v~~~~~fp~g-----~~~~~~k~~eve~A~~ 80 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCFV----PL-AREALKG---SGVKVCTVIGFPLG-----ATTTEVKVAEAREAIA 80 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHHH----HH-HHHHcCC---CCcEEEEEEecCCC-----CCcHHHHHHHHHHHHH
Confidence 4678899999999998887776665443 22 3334432 34566655543321 2345666667888776
Q ss_pred HcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh--CCcCE--EecCcccHHHHHHHhcC---CCeeEEccc--CCcccc
Q 027845 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKY--IGLSEACAATIRRAHAV---HPITAVQLE--WSLWSR 185 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~--G~ir~--iGvs~~~~~~l~~~~~~---~~~~~~q~~--~n~~~~ 185 (218)
+|.|-+|++.--..-...+.+.+++.+.++++. |..-- +...-.+.+++.++.+. ...|++... |..-..
T Consensus 81 -~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~a 159 (203)
T cd00959 81 -DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGA 159 (203)
T ss_pred -cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence 699999987655433334556677777777765 43322 23333456666666544 456777777 653333
Q ss_pred cchh--chHHHHHhcCCCeeeEeh
Q 027845 186 DVEA--EIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 186 ~~~~--~l~~~~~~~g~i~i~~~s 207 (218)
..++ .+.+.++ .. ++|.+-.
T Consensus 160 t~~~v~~~~~~~~-~~-v~ik~aG 181 (203)
T cd00959 160 TVEDVKLMKEAVG-GR-VGVKAAG 181 (203)
T ss_pred CHHHHHHHHHHhC-CC-ceEEEeC
Confidence 3221 2334444 44 6665543
No 108
>PRK14017 galactonate dehydratase; Provisional
Probab=53.56 E-value=1.5e+02 Score=25.75 Aligned_cols=153 Identities=11% Similarity=0.062 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCC-----cCC----CcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDI-----YGP----YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVR 106 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~-----Yg~----g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~ 106 (218)
+.++..+.++.+.+.|++.|=.--. ++. ....+.+ +++++.-.+++.|..=.... .+.+.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i-~avr~~~g~~~~l~vDaN~~--------w~~~~-- 192 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARV-AAVREAVGPEIGIGVDFHGR--------VHKPM-- 192 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHH-HHHHHHhCCCCeEEEECCCC--------CCHHH--
Confidence 4466777788888999998876321 110 0111222 33443222344443333221 33443
Q ss_pred HHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc
Q 027845 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR 185 (218)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 185 (218)
..+.++.|. .+++.++-.|=+.. -++.+.+|.+...+. ..|=|-++...+..+++...++++|+..+..--
T Consensus 193 --A~~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GG 264 (382)
T PRK14017 193 --AKVLAKELE--PYRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGG 264 (382)
T ss_pred --HHHHHHhhc--ccCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCC
Confidence 233333442 24555666663322 246778888877665 667777899999999998889999998665432
Q ss_pred -cchhchHHHHHhcCCCeeeEehh
Q 027845 186 -DVEAEIVPTCSACRSSKLKIWSI 208 (218)
Q Consensus 186 -~~~~~l~~~~~~~g~i~i~~~sp 208 (218)
.....+.+.|+++| +.++..+.
T Consensus 265 it~~~~ia~~A~~~g-i~~~~h~~ 287 (382)
T PRK14017 265 ITECRKIAAMAEAYD-VALAPHCP 287 (382)
T ss_pred HHHHHHHHHHHHHcC-CeEeecCC
Confidence 22258999999999 88887754
No 109
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.20 E-value=92 Score=27.68 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=59.0
Q ss_pred ccCCcCCCcHHHHHHHHhcC----CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC-ccceEeeecCCC
Q 027845 57 TSDIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID-CIDLYYQHRVDT 131 (218)
Q Consensus 57 ta~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~-~lDl~~lh~~d~ 131 (218)
....|| .|+.|-+++++ .+.+-++|.|-.-+. .--+++..-+++.-++.... .+.++.++.|..
T Consensus 63 ~d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~--------iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 63 DAAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAE--------VIGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred CceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHh--------hhhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 344577 57778888876 334446676665432 22333444444333333211 478899998866
Q ss_pred CCCH----HHHHHHHHH-HHH-------hCCcCEEe-cCc-cc-HHHHHHHhcCCCeeEEc
Q 027845 132 KIPI----EVTIGELKK-LVE-------EGKIKYIG-LSE-AC-AATIRRAHAVHPITAVQ 177 (218)
Q Consensus 132 ~~~~----~~~~~~l~~-l~~-------~G~ir~iG-vs~-~~-~~~l~~~~~~~~~~~~q 177 (218)
.... +.++++|-+ +.. .+.|--|| ..+ .+ .+++.++++...+.++.
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 5432 334555542 222 22344454 222 23 67888888886555543
No 110
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=53.07 E-value=77 Score=27.33 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=78.4
Q ss_pred CChHHHHHHHHHHHHCC-CCeeeccCCcCCCcHHHHHHHHhcCCC-CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSG-ITLLDTSDIYGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~G-i~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (218)
.+.++..+.-+.|-+.| .+|...|..++.+..=+.+-++++.+. --.+-+.--+|. .+.+... -
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~---------l~~eq~~-----~ 149 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM---------LTEEQAE-----K 149 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC---------CCHHHHH-----H
Confidence 46677888888888999 888888888863333333445554421 111333333331 3344433 3
Q ss_pred HHHcCCCccceEeeecCCC----------CCCHHHHHHHHHHHHHhCCcCE----EecCcccHHHHHHHhcCCCee-EEc
Q 027845 113 LKRLDIDCIDLYYQHRVDT----------KIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAVHPIT-AVQ 177 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~----------~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~~~~~-~~q 177 (218)
|+.-|+++ +-|+.+. ..++++-++.++.+++.|.--. +|+.+...+.+.-++...... ...
T Consensus 150 L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pds 225 (335)
T COG0502 150 LADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDS 225 (335)
T ss_pred HHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCe
Confidence 56667764 4465432 3457899999999999998654 455555555454444432222 556
Q ss_pred ccCCccccc
Q 027845 178 LEWSLWSRD 186 (218)
Q Consensus 178 ~~~n~~~~~ 186 (218)
+++|.+.+.
T Consensus 226 VPIn~l~P~ 234 (335)
T COG0502 226 VPINFLNPI 234 (335)
T ss_pred eeeeeecCC
Confidence 667766664
No 111
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=52.87 E-value=39 Score=30.36 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=63.2
Q ss_pred CCCCEEEEeccCCCCCC-C----------CCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHH
Q 027845 78 MRERVELATKFGISFAD-G----------GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLV 146 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~-~----------~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~ 146 (218)
.+.+++++.-++..... . -..+.+.+.|. +||.+.|+|. ...+++|+++..++..
T Consensus 165 L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~-------~Rl~t~y~d~-------~a~~ldeAl~~a~~~~ 230 (561)
T COG2987 165 LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRID-------KRLRTGYLDE-------IAETLDEALALAEEAT 230 (561)
T ss_pred ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHH-------HHHhcchhhh-------hcCCHHHHHHHHHHHH
Confidence 47778888887643311 0 01223444444 4777888775 2467899999999999
Q ss_pred HhCCcCEEecCcccHHHHHHHhcC-CC--eeEEcccCC
Q 027845 147 EEGKIKYIGLSEACAATIRRAHAV-HP--ITAVQLEWS 181 (218)
Q Consensus 147 ~~G~ir~iGvs~~~~~~l~~~~~~-~~--~~~~q~~~n 181 (218)
+.|+-.+||+-..-++.+..+++. .. +..-|...|
T Consensus 231 ~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 231 AAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred hcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 999999999999999999999888 33 445566544
No 112
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=52.86 E-value=80 Score=22.37 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=45.3
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC---CccceEeeecCCCC-CCHHHHHHHHHHHHHh
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI---DCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~ 148 (218)
+|=-+.|+-|++. . ..+..+++.+++.++.... ...|++++..+... .+..++.+.|..+.+.
T Consensus 38 ~R~GisVsKKvgk-A-------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN-A-------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc-h-------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4555777778764 3 5688899988888876632 35799999988654 5677777777776655
No 113
>PRK15108 biotin synthase; Provisional
Probab=52.58 E-value=1.5e+02 Score=25.49 Aligned_cols=114 Identities=14% Similarity=0.162 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCc-CC-CcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIY-GP-YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Y-g~-g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (218)
.+.++..+..+.+.+.|++.|-..... .. ...=+.+.+.++.++...+.++.-.+. .+.+.++ -
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~---------ls~e~l~-----~ 141 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT---------LSESQAQ-----R 141 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc---------CCHHHHH-----H
Confidence 477888888888889999988543221 11 112244555555432222333322331 3333332 3
Q ss_pred HHHcCCCccceEeeecC------CCCCCHHHHHHHHHHHHHhCCcCE----EecCcccHH
Q 027845 113 LKRLDIDCIDLYYQHRV------DTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAA 162 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh~~------d~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~ 162 (218)
|+..|++++.+-+=-.| -....+++.++.++.+++.|.--. +|+.....+
T Consensus 142 LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed 201 (345)
T PRK15108 142 LANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKD 201 (345)
T ss_pred HHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHH
Confidence 56667765433211111 112357889999999999997443 455443333
No 114
>PRK02227 hypothetical protein; Provisional
Probab=52.57 E-value=1.3e+02 Score=24.71 Aligned_cols=151 Identities=12% Similarity=0.109 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcC---CCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYG---PYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (218)
+.+|+ ..|+..|..+||.-+--- .......+.+..+. -+.+.-||..+|-.+ ..+..+..++. .
T Consensus 9 ~~eEA----~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~-~~~~~pvSAtiGD~p-------~~p~~~~~aa~-~ 75 (238)
T PRK02227 9 NLEEA----LEALAGGADIIDVKNPKEGSLGANFPWVIREIVAA-VPGRKPVSATIGDVP-------YKPGTISLAAL-G 75 (238)
T ss_pred CHHHH----HHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHH-hCCCCCceeeccCCC-------CCchHHHHHHH-H
Confidence 44555 567889999999875321 12344555444433 234456777777433 44544444433 2
Q ss_pred HHHcCCCccceEeeecCCCCCC---HHHHHHHHHHHHHhCCcCEEecCcc------cHHHHHHHhcCCCeeEEcccC---
Q 027845 113 LKRLDIDCIDLYYQHRVDTKIP---IEVTIGELKKLVEEGKIKYIGLSEA------CAATIRRAHAVHPITAVQLEW--- 180 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~~~~---~~~~~~~l~~l~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~~~--- 180 (218)
...-|.||+-+=+....+...- +..++.++.......++-..+.+.+ ++..+..+.....++.+++.-
T Consensus 76 ~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~K 155 (238)
T PRK02227 76 AAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIK 155 (238)
T ss_pred HHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccC
Confidence 3456777766654422211110 1122333444445666778888875 566666666666677777632
Q ss_pred ---Cccccc---chhchHHHHHhcC
Q 027845 181 ---SLWSRD---VEAEIVPTCSACR 199 (218)
Q Consensus 181 ---n~~~~~---~~~~l~~~~~~~g 199 (218)
++++.- ....+++.|+++|
T Consensus 156 dg~~Lfd~l~~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 156 DGKSLFDHMDEEELAEFVAEARSHG 180 (238)
T ss_pred CCcchHhhCCHHHHHHHHHHHHHcc
Confidence 334332 2236788899999
No 115
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=52.52 E-value=1e+02 Score=27.52 Aligned_cols=144 Identities=14% Similarity=0.124 Sum_probs=78.3
Q ss_pred HHHHHHHHHHCCCCeeeccCCcCCC------cHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 027845 40 MIALIHHAINSGITLLDTSDIYGPY------TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg~g------~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (218)
..+++...+..+..=-|.- .|+.. .+.+.+.+.+.. ..++ +|.|--... +-.-+.+++-+..
T Consensus 59 Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInA-d~~d-IiFts~ATE---------s~Nlvl~~v~~~~ 126 (428)
T KOG1549|consen 59 VLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINA-DPSD-IVFTSGATE---------SNNLVLKGVARFF 126 (428)
T ss_pred HHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCC-CCCc-EEEeCCchH---------HHHHHHHHhhccc
Confidence 5666666666655433333 34421 233445666644 3444 444433221 2344555555555
Q ss_pred HHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCC-cCEEecCc---ccHHHHHHHhcC-CC---eeEEcccCCcccc
Q 027845 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSE---ACAATIRRAHAV-HP---ITAVQLEWSLWSR 185 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~-ir~iGvs~---~~~~~l~~~~~~-~~---~~~~q~~~n~~~~ 185 (218)
.. +++. .++.+|.--+ -+.+..+.++++|. ++++.+.+ .+.+.+++.++. +. ++.+.++..+.
T Consensus 127 ~~-~~~k-~iitl~~eH~-----~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~-- 197 (428)
T KOG1549|consen 127 GD-KTKK-HIITLQTEHP-----CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVL-- 197 (428)
T ss_pred cc-cccc-eEEEecccCc-----chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccc--
Confidence 55 5543 5666654211 25566667778884 36788876 456666666665 22 33333343333
Q ss_pred cchhchHHHHHhcCCCeeeE
Q 027845 186 DVEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 186 ~~~~~l~~~~~~~g~i~i~~ 205 (218)
++-+++...|++.| +.++.
T Consensus 198 ~Pv~EI~~icr~~~-v~v~~ 216 (428)
T KOG1549|consen 198 QPVKEIVKICREEG-VQVHV 216 (428)
T ss_pred ccHHHHHHHhCcCC-cEEEe
Confidence 34479999999999 76654
No 116
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=52.49 E-value=97 Score=24.19 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=25.6
Q ss_pred cceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHH
Q 027845 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATI 164 (218)
Q Consensus 121 lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 164 (218)
+|.+++|..+ +. +..+.+.+......++.+|+++....++
T Consensus 74 ~d~Vqlhg~e---~~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 74 LDVVQLHGDE---SP-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCEEEECCCC---CH-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 6889999764 22 2334444333346788899998766554
No 117
>COG0218 Predicted GTPase [General function prediction only]
Probab=52.43 E-value=1.2e+02 Score=24.16 Aligned_cols=88 Identities=11% Similarity=-0.093 Sum_probs=63.2
Q ss_pred CCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccce--Eeee
Q 027845 50 SGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDL--YYQH 127 (218)
Q Consensus 50 ~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl--~~lh 127 (218)
..+-.+|.-+.-- ..+..+=+++.....+-+++.||.--. ......+.+....+.|+.+..|- +++.
T Consensus 109 ~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DKi---------~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ 177 (200)
T COG0218 109 GVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADKL---------KKSERNKQLNKVAEELKKPPPDDQWVVLF 177 (200)
T ss_pred EEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEccccC---------ChhHHHHHHHHHHHHhcCCCCccceEEEE
Confidence 3455778765544 456677788888778889999998643 35667788888888888776665 4555
Q ss_pred cCCCCCCHHHHHHHHHHHHHh
Q 027845 128 RVDTKIPIEVTIGELKKLVEE 148 (218)
Q Consensus 128 ~~d~~~~~~~~~~~l~~l~~~ 148 (218)
.......++++++.+.+....
T Consensus 178 ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 178 SSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ecccccCHHHHHHHHHHHhhc
Confidence 445556788999988887654
No 118
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=52.43 E-value=1.5e+02 Score=25.50 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=72.9
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccCCcCC----------------C--cHHHHHHHHhcCCCCCCEEEEeccCCCCCCC
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSDIYGP----------------Y--TNEILVGKALKGGMRERVELATKFGISFADG 95 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~----------------g--~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~ 95 (218)
..+.+...++.++|-+.|+-+|=|--.+.. | ....++-...+ ..+.++++|=..
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------ 157 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------ 157 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc------
Confidence 346677899999999999999866544430 0 11222222221 123455555443
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCC-CCCHHH-HHHHHHHHHHhCCcCEEecCcccHHHHHHHhc
Q 027845 96 GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-KIPIEV-TIGELKKLVEEGKIKYIGLSEACAATIRRAHA 169 (218)
Q Consensus 96 ~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-~~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 169 (218)
+-+.+.++++...++=. .|+.++|+-.. ..++++ -+.+|..|.+.= ---||+|.|+...+..+..
T Consensus 158 -----~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 158 -----TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred -----cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHH
Confidence 45678888876655433 39999999643 245554 366666666553 4579999998775554433
No 119
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=52.32 E-value=1.7e+02 Score=25.96 Aligned_cols=152 Identities=9% Similarity=-0.027 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
+.++..+..+.+++.|++.|=.--.-......+.+ +++++.-.+++.|..=.... .+++...+ .+++
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v-~avRe~vG~~~~L~vDaN~~--------w~~~~A~~----~~~~ 262 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC-RLAREVIGPDNKLMIDANQR--------WDVPEAIE----WVKQ 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHHHHhcCCCCeEEEECCCC--------CCHHHHHH----HHHH
Confidence 34556677777788999988654211100112222 34444223344443333221 34443322 2333
Q ss_pred cCCCccceEeeecCCCCCCHHHHHHHHHHHHHhC----CcCEEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhc
Q 027845 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG----KIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAE 190 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 190 (218)
|. -+++.++-.|=+.. -++.+.+|++.. .=-+.|=|-++...++++++....+++|....-.-- .....
T Consensus 263 L~--~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~k 336 (415)
T cd03324 263 LA--EFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLA 336 (415)
T ss_pred hh--ccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHH
Confidence 32 24556666664333 355566666653 323556666889999999988889999998665432 22258
Q ss_pred hHHHHHhcCCCeeeEeh
Q 027845 191 IVPTCSACRSSKLKIWS 207 (218)
Q Consensus 191 l~~~~~~~g~i~i~~~s 207 (218)
+.+.|+++| +.+...+
T Consensus 337 ia~lA~a~g-i~~~pH~ 352 (415)
T cd03324 337 VLLMAAKFG-VPVCPHA 352 (415)
T ss_pred HHHHHHHcC-CeEEEcC
Confidence 999999999 8887763
No 120
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=52.27 E-value=1.3e+02 Score=26.47 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeee
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQH 127 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh 127 (218)
.+.+.+++.++..+ +|+.+++.++.+.
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~ 205 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLV 205 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecce
Confidence 34555555555443 2555555555443
No 121
>PLN02428 lipoic acid synthase
Probab=51.53 E-value=1.6e+02 Score=25.53 Aligned_cols=156 Identities=10% Similarity=0.097 Sum_probs=83.6
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccC----CcCCCcHHHHHHHHhcCCCC--CCEEEEeccCCCCCCCCCCCCCHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSD----IYGPYTNEILVGKALKGGMR--ERVELATKFGISFADGGKIRGDPAYVRAC 108 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~----~Yg~g~se~~lg~~l~~~~r--~~~~I~tK~~~~~~~~~~~~~~~~~i~~~ 108 (218)
.+.++..++.+.+.+.|++++=... .|.++..+. +.+.++.+.+ ..+.|.. +.+.. ..+ ..
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~-~~elir~Ir~~~P~i~Ie~-L~pdf------~~d-----~e 196 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGH-FAETVRRLKQLKPEILVEA-LVPDF------RGD-----LG 196 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHH-HHHHHHHHHHhCCCcEEEE-eCccc------cCC-----HH
Confidence 3556677888888899998763321 233343443 3344444221 2333333 11111 011 12
Q ss_pred HHHHHHHcCCCccceEeeecCCC-----------CCCHHHHHHHHHHHHHh--CCcC----EEecCcccHHHHHHHhcC-
Q 027845 109 CEASLKRLDIDCIDLYYQHRVDT-----------KIPIEVTIGELKKLVEE--GKIK----YIGLSEACAATIRRAHAV- 170 (218)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~-----------~~~~~~~~~~l~~l~~~--G~ir----~iGvs~~~~~~l~~~~~~- 170 (218)
+-+.|+.-| +|. +-|+++. ....++.++.++.+++. |..- -+|+ .-+.+++.+.++.
T Consensus 197 lL~~L~eAG---~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~L 271 (349)
T PLN02428 197 AVETVATSG---LDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDL 271 (349)
T ss_pred HHHHHHHcC---CCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHH
Confidence 222233344 555 3366653 23467889999999988 7663 2577 4566665555444
Q ss_pred --CCeeEEc-----------ccCCccccc-chhchHHHHHhcCCCeeeEehhh
Q 027845 171 --HPITAVQ-----------LEWSLWSRD-VEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 171 --~~~~~~q-----------~~~n~~~~~-~~~~l~~~~~~~g~i~i~~~spl 209 (218)
..++.+. ++.+.+.+. .-+.+-+++.+.| ...++-+||
T Consensus 272 relgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~g-f~~v~sgp~ 323 (349)
T PLN02428 272 RAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMG-FRYVASGPL 323 (349)
T ss_pred HHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcC-CceEEecCc
Confidence 3333332 233333332 2246777889999 888899998
No 122
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=51.03 E-value=1.2e+02 Score=24.58 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=54.8
Q ss_pred cCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCC
Q 027845 17 VSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGG 96 (218)
Q Consensus 17 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~ 96 (218)
+-.+.+-|.-+ ++++..++.+.++++|..|+-||..+..+.+-.---+.+++.-.+ -+.-|....-
T Consensus 127 ~lKVIlEt~~L--------t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~vg~--~vgvKaSGGI---- 192 (228)
T COG0274 127 VLKVILETGLL--------TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETVGG--RVGVKASGGI---- 192 (228)
T ss_pred eEEEEEecccc--------CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhcc--CceeeccCCc----
Confidence 33455555544 556679999999999999999999766543222222333331111 1233433222
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCc
Q 027845 97 KIRGDPAYVRACCEASLKRLDIDC 120 (218)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~ 120 (218)
.+.+....-++.-.-|+|++.
T Consensus 193 ---rt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 193 ---RTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred ---CCHHHHHHHHHHhHHHhcccc
Confidence 468888888888889999863
No 123
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=50.99 E-value=1.4e+02 Score=24.47 Aligned_cols=111 Identities=20% Similarity=0.117 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCC------------------CcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCC
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGP------------------YTNEILVGKALKGGMRERVELATKFGISFADGG 96 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~------------------g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~ 96 (218)
.+.++..++.++|-+.||.||=|.-.-.. =.+-.+|-+.. + ...-++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A-~-tgkPvIlSTG~-------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIA-K-TGKPVILSTGM-------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHH-T-T-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHH-H-hCCcEEEECCC--------
Confidence 47788999999999999999987754220 01222222221 1 23346666543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCC-CCCHHH-HHHHHHHHHHhCCcCEEecCcccHH
Q 027845 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-KIPIEV-TIGELKKLVEEGKIKYIGLSEACAA 162 (218)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-~~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~ 162 (218)
.+.+.|+++++...++-+ -++.++|+... -.+.++ -++.+..|++.=- -.||.|.|+..
T Consensus 123 ---stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 ---STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp -----HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred ---CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 346778888877645443 58999999743 244443 4667777775433 67899998754
No 124
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=50.53 E-value=1.6e+02 Score=25.26 Aligned_cols=149 Identities=11% Similarity=0.026 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHCC-CCeeeccCCc-CCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 38 PDMIALIHHAINSG-ITLLDTSDIY-GPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 38 ~~~~~~l~~A~~~G-i~~~Dta~~Y-g~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
++..+.+..+++.| ++.|-.--.- ......+.+ +++++.-.+++.|..=.... .+.+...+ +-+.|+.
T Consensus 144 ~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~d~~~v-~avr~~~g~~~~l~iDaN~~--------~~~~~A~~-~~~~l~~ 213 (365)
T cd03318 144 ERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHV-EAIAKALGDRASVRVDVNQA--------WDESTAIR-ALPRLEA 213 (365)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeCCCChHHHHHHH-HHHHHHcCCCcEEEEECCCC--------CCHHHHHH-HHHHHHh
Confidence 44555667778888 8888654210 000112333 44444223344443322211 33433222 1233333
Q ss_pred cCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHH
Q 027845 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 193 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~ 193 (218)
+ ++.++-.|-+. +-++.+.+|++...+. +.|=+-++...+.++++...++++|+.....-- ....++++
T Consensus 214 ~-----~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~ 284 (365)
T cd03318 214 A-----GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAA 284 (365)
T ss_pred c-----CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHH
Confidence 3 44455555322 2367777888776665 666667889999999988888899887655421 12248899
Q ss_pred HHHhcCCCeeeEe
Q 027845 194 TCSACRSSKLKIW 206 (218)
Q Consensus 194 ~~~~~g~i~i~~~ 206 (218)
.|+++| +.++..
T Consensus 285 ~a~~~g-i~~~~~ 296 (365)
T cd03318 285 IAEAAG-IALYGG 296 (365)
T ss_pred HHHHcC-Cceeec
Confidence 999999 887653
No 125
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=50.10 E-value=1.7e+02 Score=25.58 Aligned_cols=84 Identities=13% Similarity=-0.056 Sum_probs=57.4
Q ss_pred eEeeecCCCCCCHHHHHHHHHHHHHh------CCcCEEecCcccHHHHHHHhcCCCeeEEcccCCccccc-chhchHHHH
Q 027845 123 LYYQHRVDTKIPIEVTIGELKKLVEE------GKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTC 195 (218)
Q Consensus 123 l~~lh~~d~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~ 195 (218)
++++..|=+..+.++-++.+.++.+. +.=-..|=+.++...++++++....+++|+..+-.--- ....+.+.|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 34566554333322346777777766 33345566778899999999888889999987754321 225899999
Q ss_pred HhcCCCeeeEeh
Q 027845 196 SACRSSKLKIWS 207 (218)
Q Consensus 196 ~~~g~i~i~~~s 207 (218)
+.+| +.++..+
T Consensus 309 ~a~G-i~~~~h~ 319 (369)
T cd03314 309 KEHG-VGAYLGG 319 (369)
T ss_pred HHcC-CcEEEeC
Confidence 9999 8888743
No 126
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=49.97 E-value=1.5e+02 Score=24.56 Aligned_cols=149 Identities=11% Similarity=0.037 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHCCCCeeeccCCcCCCcHHHH--HHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEIL--VGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~--lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
+...+.++..-+.|..+|..+..-+.+..+.- +++.+++.. .+-..-.+.. .+.++..+...+... ..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~--g~~~i~Hlt~-------r~~n~~~l~~~L~~~-~~ 84 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKET--GIPTVPHLTC-------IGATREEIREILREY-RE 84 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhc--CCCeeEEeee-------cCCCHHHHHHHHHHH-HH
Confidence 44666666666789999999876553322322 334443210 1111111111 124577777777754 78
Q ss_pred cCCCccceEeeecCCC-------CCCHHHHHHHHHHHHHhCCcCEEecCccc--------H-HHHHHHhcC----CCeeE
Q 027845 116 LDIDCIDLYYQHRVDT-------KIPIEVTIGELKKLVEEGKIKYIGLSEAC--------A-ATIRRAHAV----HPITA 175 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~-------~~~~~~~~~~l~~l~~~G~ir~iGvs~~~--------~-~~l~~~~~~----~~~~~ 175 (218)
+|++ +++.+-...+ ...+....+-++.+++..---+||+..++ . ..+..+.+. ..+-+
T Consensus 85 ~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~i 162 (272)
T TIGR00676 85 LGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAI 162 (272)
T ss_pred CCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEe
Confidence 8864 3443332111 12233444444555544223578877532 1 234444333 45788
Q ss_pred EcccCCcccccchhchHHHHHhcCCCe
Q 027845 176 VQLEWSLWSRDVEAEIVPTCSACRSSK 202 (218)
Q Consensus 176 ~q~~~n~~~~~~~~~l~~~~~~~g~i~ 202 (218)
-|.-|++ +....+++.|++.| +.
T Consensus 163 TQ~~fd~---~~~~~~~~~~~~~g-i~ 185 (272)
T TIGR00676 163 TQLFFDN---DDYYRFVDRCRAAG-ID 185 (272)
T ss_pred eccccCH---HHHHHHHHHHHHcC-CC
Confidence 8887665 33347888999997 44
No 127
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=49.44 E-value=1.7e+02 Score=25.03 Aligned_cols=152 Identities=15% Similarity=0.096 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCC--C-----cHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGP--Y-----TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRAC 108 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~--g-----~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~ 108 (218)
+.++..+.++.+++.|++.|=.--..+. + ...+.+ +++++.-.+++-|..=.... .+++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~~l~vDan~~--------~~~~~A~-- 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDVDLMLDCYMS--------WNLNYAI-- 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCCcEEEECCCC--------CCHHHHH--
Confidence 4555667778888999998865421111 0 112222 33333222333333222211 3344322
Q ss_pred HHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCeeEEcccCCcccc-c
Q 027845 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-D 186 (218)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~ 186 (218)
+.+++|. .+++.++-.|-+. +-++.+.+|++...+. +.|=+.++...+.++++....+++|...+-.-- .
T Consensus 189 --~~~~~l~--~~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit 260 (341)
T cd03327 189 --KMARALE--KYELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGIT 260 (341)
T ss_pred --HHHHHhh--hcCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 2333332 2455555555332 2356677787776665 667777899999999998889999998665432 2
Q ss_pred chhchHHHHHhcCCCeeeEeh
Q 027845 187 VEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 187 ~~~~l~~~~~~~g~i~i~~~s 207 (218)
....+.+.|+++| +.+...+
T Consensus 261 ~~~~i~~~A~~~g-~~~~~h~ 280 (341)
T cd03327 261 ELKKIAALAEAYG-VPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHcC-Ceecccc
Confidence 2258999999999 8877663
No 128
>PRK12928 lipoyl synthase; Provisional
Probab=49.19 E-value=1.6e+02 Score=24.74 Aligned_cols=75 Identities=8% Similarity=-0.003 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHhC---CcC---EEecCcccHHHHHHHhcC---CCeeEEcc-cCCc-------ccc----cchhch
Q 027845 133 IPIEVTIGELKKLVEEG---KIK---YIGLSEACAATIRRAHAV---HPITAVQL-EWSL-------WSR----DVEAEI 191 (218)
Q Consensus 133 ~~~~~~~~~l~~l~~~G---~ir---~iGvs~~~~~~l~~~~~~---~~~~~~q~-~~n~-------~~~----~~~~~l 191 (218)
.+.++.++.++.+++.| .++ -+|+ +-+.+++.+.++. .+++.+.+ .|.. ..+ ...+.+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 45778899999999988 333 2577 5566655554443 34444433 3321 111 122367
Q ss_pred HHHHHhcCCCeeeEehhh
Q 027845 192 VPTCSACRSSKLKIWSII 209 (218)
Q Consensus 192 ~~~~~~~g~i~i~~~spl 209 (218)
-..+.+.| ...++-+||
T Consensus 264 ~~~~~~~g-~~~~~~~p~ 280 (290)
T PRK12928 264 GQIARELG-FSHVRSGPL 280 (290)
T ss_pred HHHHHHcC-CceeEecCc
Confidence 77788899 888899998
No 129
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=48.68 E-value=99 Score=22.21 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=44.3
Q ss_pred CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC----C--ccceEeeecCCCC-CCHHHHHHHHHHHH
Q 027845 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI----D--CIDLYYQHRVDTK-IPIEVTIGELKKLV 146 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~----~--~lDl~~lh~~d~~-~~~~~~~~~l~~l~ 146 (218)
|=.+.|+-|++... ..+..+++.++++++.... . -.|++++-.+... .+..++.+.|+.+.
T Consensus 47 RlG~sVSKKv~~kA-------V~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKKA-------VVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCch-------hhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 55678888865433 4588999999999988754 2 4789999998654 46667777776654
No 130
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.66 E-value=1.1e+02 Score=26.81 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=0.0
Q ss_pred eEeeecCCC-----------CCCHHHHHHHHHHHHHhCCcCEE-------ecCc--ccHHHHHHHhcCC---CeeEEccc
Q 027845 123 LYYQHRVDT-----------KIPIEVTIGELKKLVEEGKIKYI-------GLSE--ACAATIRRAHAVH---PITAVQLE 179 (218)
Q Consensus 123 l~~lh~~d~-----------~~~~~~~~~~l~~l~~~G~ir~i-------Gvs~--~~~~~l~~~~~~~---~~~~~q~~ 179 (218)
.+.||.+++ ..+++++++++.++.++-..+-. |+.. -++..+.+++... +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Q ss_pred CCcccc--------cchhchHHHHHhcCCCeeeEehhhHH-h
Q 027845 180 WSLWSR--------DVEAEIVPTCSACRSSKLKIWSIIKS-Y 212 (218)
Q Consensus 180 ~n~~~~--------~~~~~l~~~~~~~g~i~i~~~spl~g-~ 212 (218)
||+... .....+.+..+++| +.+......+. |
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~g-i~~tiR~~~G~dI 361 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAG-VPCTVRDTRGQEI 361 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCC-CeEEeeCCCCcCH
No 131
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=48.57 E-value=1.3e+02 Score=23.54 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
|++.+.+++..+++.|+...|.-...- -..=..+|+.+ .++++++.--. ...+.+++.+......
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~vG~~w---~~~~i~va~e~-----------~as~~~~~~l~~l~~~ 73 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDIIEEGL-APGMDIVGDKY---EEGEIFVPELL-----------MAADAMKAGLDLLKPL 73 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHH---ccCCeeHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 678899999999999977655331110 01222344443 23444333211 2233444545544444
Q ss_pred cCCCc---cceEeeecCCCCCCHHHHHHHHHHHHHhCCc-CEEecCcccHHHHHHHhcCCCeeEEcccCCccccc-chhc
Q 027845 116 LDIDC---IDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAE 190 (218)
Q Consensus 116 Lg~~~---lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 190 (218)
+.... ---+++..+..+..--+..=.-.-++..|.= .++| .+.+++.+.+......|+++-+.++....- ...+
T Consensus 74 ~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~ 152 (201)
T cd02070 74 LGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKE 152 (201)
T ss_pred HhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHH
Confidence 43221 1234444443332222222223346667764 5567 566788888888888888888877655543 2347
Q ss_pred hHHHHHhcC
Q 027845 191 IVPTCSACR 199 (218)
Q Consensus 191 l~~~~~~~g 199 (218)
+++.+++.+
T Consensus 153 ~i~~lr~~~ 161 (201)
T cd02070 153 VIEALKEAG 161 (201)
T ss_pred HHHHHHHCC
Confidence 788888776
No 132
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=48.12 E-value=1.7e+02 Score=24.61 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=79.9
Q ss_pred HHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q 027845 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID 119 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~ 119 (218)
..++-....+.|+|..|.+..-. . ....+++...+.... ..+.+.++++++...+.|+++
T Consensus 21 Va~VT~~La~~~vNI~dls~~~~-----~---------~~~~F~m~~~~~~p~------~~~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 21 VAAVTGFLAEHGCYITELHSFDD-----R---------LSGRFFMRVEFHSEE------GLDEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred HHHHHHHHHhCCCCEEEeeeeec-----C---------CCCeEEEEEEEecCC------CCCHHHHHHHHHHHHHHhCcE
Confidence 45555666789999999886411 0 133344444443211 256899999999999999975
Q ss_pred ccceEeeecCCCCCC-------HHHHHHHHHHHHHhCCc--CEEe-cCccc-HHHHHHHhcCCCeeEEcccCCccccc-c
Q 027845 120 CIDLYYQHRVDTKIP-------IEVTIGELKKLVEEGKI--KYIG-LSEAC-AATIRRAHAVHPITAVQLEWSLWSRD-V 187 (218)
Q Consensus 120 ~lDl~~lh~~d~~~~-------~~~~~~~l~~l~~~G~i--r~iG-vs~~~-~~~l~~~~~~~~~~~~q~~~n~~~~~-~ 187 (218)
+.++.+..... -...+++|-+..+.|.. .=.. +||.. ...+ .+...+-+.+++....++. .
T Consensus 81 ----i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~l---A~~~gIp~~~~~~~~~~~~~~ 153 (286)
T PRK13011 81 ----WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPL---AAWHGIPFHHFPITPDTKPQQ 153 (286)
T ss_pred ----EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHH---HHHhCCCEEEeCCCcCchhhh
Confidence 34444433211 12467888888888865 2233 36643 3333 3333333444444443332 2
Q ss_pred hhchHHHHHhcCCCeeeEehhh
Q 027845 188 EAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 188 ~~~l~~~~~~~g~i~i~~~spl 209 (218)
+..+++..++.+ .-++.-.-|
T Consensus 154 ~~~~~~~l~~~~-~Dlivlagy 174 (286)
T PRK13011 154 EAQVLDVVEESG-AELVVLARY 174 (286)
T ss_pred HHHHHHHHHHhC-cCEEEEeCh
Confidence 346788888876 544443333
No 133
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=48.05 E-value=1.3e+02 Score=23.95 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCC-CeeEEcc
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVH-PITAVQL 178 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~ 178 (218)
+++...+ +-+.|-+-|+.-+.+ -+- ..+.++.+++++++.-=-.||.-+ .++++.+++++.. .|-
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEi---t~~-----t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi---- 84 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEV---TLR-----TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---- 84 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEE---eCC-----CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----
Confidence 3444433 444555667655444 321 124666666776664446789887 7889999988773 332
Q ss_pred cCCcccccchhchHHHHHhcCCCeeeE
Q 027845 179 EWSLWSRDVEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 179 ~~n~~~~~~~~~l~~~~~~~g~i~i~~ 205 (218)
.+| ...++++++|+++| +.++.
T Consensus 85 -vsP---~~~~~v~~~~~~~~-i~~iP 106 (204)
T TIGR01182 85 -VSP---GLTPELAKHAQDHG-IPIIP 106 (204)
T ss_pred -ECC---CCCHHHHHHHHHcC-CcEEC
Confidence 122 22369999999999 66543
No 134
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.93 E-value=1.5e+02 Score=24.19 Aligned_cols=102 Identities=10% Similarity=0.003 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCC-----CCCCHHHHHHHHHHHHHh-CCcCEEecC---cccHHHHHHHhcC
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVD-----TKIPIEVTIGELKKLVEE-GKIKYIGLS---EACAATIRRAHAV 170 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d-----~~~~~~~~~~~l~~l~~~-G~ir~iGvs---~~~~~~l~~~~~~ 170 (218)
++.+ -+.++-+.|.++|++++++-+..... ...+...-++.++.+++. +.++...++ .-....++.+.+.
T Consensus 19 ~~~~-~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLE-QVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 3444 34455566888999999887542211 001111234455555332 335554443 2235566666554
Q ss_pred CCeeEEcccCCcccccchhchHHHHHhcCCCeee
Q 027845 171 HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLK 204 (218)
Q Consensus 171 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~ 204 (218)
.++.+.+.++.-+.....+.+++++++| ..+.
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G-~~v~ 129 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLG-MDVV 129 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCC-CeEE
Confidence 3445554433333222347888888888 6543
No 135
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=47.75 E-value=88 Score=27.50 Aligned_cols=109 Identities=18% Similarity=0.089 Sum_probs=61.8
Q ss_pred cHHHHHHHHhcC-CCCCCEEEEeccCCCCCC-----C----CCCCCCHHHHHHHHHHHHHHcC-CCccceEeeecC----
Q 027845 65 TNEILVGKALKG-GMRERVELATKFGISFAD-----G----GKIRGDPAYVRACCEASLKRLD-IDCIDLYYQHRV---- 129 (218)
Q Consensus 65 ~se~~lg~~l~~-~~r~~~~I~tK~~~~~~~-----~----~~~~~~~~~i~~~~~~sL~~Lg-~~~lDl~~lh~~---- 129 (218)
.+-++-++.++. .++..++|+.=.|.++.+ | +++-++.+.---.++..|..|. ...=|+++||..
T Consensus 105 GAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNP 184 (396)
T COG1448 105 GALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNP 184 (396)
T ss_pred hHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCC
Confidence 467777777777 567778998877655422 2 1222222222233334443442 345689998854
Q ss_pred CCCCCHHHHHHHHHHHH-HhCCcCEE-----ecCc---ccHHHHHHHhcCCCe
Q 027845 130 DTKIPIEVTIGELKKLV-EEGKIKYI-----GLSE---ACAATIRRAHAVHPI 173 (218)
Q Consensus 130 d~~~~~~~~~~~l~~l~-~~G~ir~i-----Gvs~---~~~~~l~~~~~~~~~ 173 (218)
....+..+.|+.+.++. ++|.|=.+ |+.+ -++..++.+++..+.
T Consensus 185 TG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~ 237 (396)
T COG1448 185 TGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPE 237 (396)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCc
Confidence 33345567888777754 56666543 5544 345566766666553
No 136
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=47.72 E-value=1.8e+02 Score=26.60 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=55.0
Q ss_pred HHHHHHHHhcC----CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCC----HHH
Q 027845 66 NEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP----IEV 137 (218)
Q Consensus 66 se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~----~~~ 137 (218)
+|+.|-+++.+ .+.+-++|.|-.. ++-+-..++...+.++.+ ++++.++.|..... .+.
T Consensus 69 ~~ekL~~aI~~~~~~~~P~~I~V~sTC~------------seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~ 135 (519)
T PRK02910 69 TAELLKDTLRRADERFQPDLIVVGPSCT------------AELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADE 135 (519)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCcH------------HHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHH
Confidence 46667777766 2333456665543 333444444444555543 67999999876544 223
Q ss_pred HHHHHHH-HH-----------HhCCcCEEecCc------ccHHHHHHHhcCCCeeEEcc
Q 027845 138 TIGELKK-LV-----------EEGKIKYIGLSE------ACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 138 ~~~~l~~-l~-----------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~q~ 178 (218)
++.++-+ +. +.+.|--||.++ .+..++.++++...+.++.+
T Consensus 136 al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v 194 (519)
T PRK02910 136 TFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV 194 (519)
T ss_pred HHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE
Confidence 3333322 21 123466677754 34567888888865555543
No 137
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=47.63 E-value=1.3e+02 Score=26.69 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=59.0
Q ss_pred CCcCCCcHHHHHHHHhcC----CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CCccceEeeecCCCCC
Q 027845 59 DIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD-IDCIDLYYQHRVDTKI 133 (218)
Q Consensus 59 ~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~~~lDl~~lh~~d~~~ 133 (218)
..|| .|+.|-+++++ .+.+-++|.|-..+.. --+++..-+++.-++.. -..+.++.++.|+...
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l--------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g 129 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTET--------IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKG 129 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhh--------cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCC
Confidence 3466 46777787776 3344566766654322 22334444433333221 0236688888887654
Q ss_pred C----HHHHHHHHHHH-------HHhCCcCEEecCcc---cHHHHHHHhcCCCeeEEcc
Q 027845 134 P----IEVTIGELKKL-------VEEGKIKYIGLSEA---CAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 134 ~----~~~~~~~l~~l-------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~q~ 178 (218)
. .+.++++|-+. ++.++|--||-++. +.+++.++++...+.++.+
T Consensus 130 ~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 130 SHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred cHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 3 23345444432 13345666765553 4678888888865555543
No 138
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=47.38 E-value=22 Score=24.80 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=38.3
Q ss_pred CcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHHHHHhcCCCeeeEehh
Q 027845 157 SEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCSACRSSKLKIWSI 208 (218)
Q Consensus 157 s~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g~i~i~~~sp 208 (218)
+.++...++++++....+++|+...-.-- .....+.+.|+++| +.+...+.
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~g-i~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHG-IPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT--EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhC-CCEEecCC
Confidence 45788889999988888999987554321 12248999999999 99988885
No 139
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=46.98 E-value=1.6e+02 Score=23.96 Aligned_cols=86 Identities=7% Similarity=-0.040 Sum_probs=45.7
Q ss_pred HHcCCCccceEeeecCCCCCCHH-HHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCCCeeEEcccCCccccc-chhc
Q 027845 114 KRLDIDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRD-VEAE 190 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~-~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 190 (218)
..+| +|-+.+|..+...... --|+.+.++.+.-.+.-|.-.. .+.+.+.++++....+.+.+---+.... ...+
T Consensus 163 ~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 163 EELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred HHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 4555 4566777654321111 0255666666654555554443 4677787777654444444422222222 2247
Q ss_pred hHHHHHhcCCCee
Q 027845 191 IVPTCSACRSSKL 203 (218)
Q Consensus 191 l~~~~~~~g~i~i 203 (218)
+.+.|++.| +.+
T Consensus 240 ~~~~~~~~~-~~~ 251 (253)
T PRK02083 240 LKAYLAEQG-IPV 251 (253)
T ss_pred HHHHHHHCC-Ccc
Confidence 888898888 543
No 140
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=46.86 E-value=1.8e+02 Score=24.62 Aligned_cols=149 Identities=14% Similarity=0.083 Sum_probs=77.8
Q ss_pred CChHHHHHHHHHHHH-CCCCe-----eeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHH
Q 027845 35 EPEPDMIALIHHAIN-SGITL-----LDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRAC 108 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~-~Gi~~-----~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~ 108 (218)
.+.+++.++|..|++ +|+.. +|.|.. | |-......+.+..|.... +.....+++.+..-
T Consensus 77 ~~~eeaL~ll~~Ai~~aGy~~~v~ialD~AAs------e------fyd~~~gkY~~~~~~~~~---~~~~~~s~delid~ 141 (295)
T PF00113_consen 77 DDNEEALDLLMEAIKEAGYEPDVAIALDVAAS------E------FYDEEDGKYDLEFKSKEK---DPSRYKSSDELIDY 141 (295)
T ss_dssp SSHHHHHHHHHHHHHHTT-TTTBEEEEE--GG------G------GEETETTEEETTTTSSSS---TGGGEEEHHHHHHH
T ss_pred cchhHHHHHHHHHHHHccccceeeeeccccHH------H------hhhccCCeEEEeeccccc---ccccccCHHHHHHH
Confidence 466789999999986 58753 344421 1 000012222222222111 01123567777777
Q ss_pred HHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEe--cCcccHHHHHHHhcCCCeeEEcccCCccccc
Q 027845 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIG--LSEACAATIRRAHAVHPITAVQLEWSLWSRD 186 (218)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iG--vs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 186 (218)
....+++. . ++.|-.|-...++ +.|..|.+-.. .+|.-+| +...++..+.+.++...-.++-+..|=.-+-
T Consensus 142 y~~li~~Y----P-IvsIEDpf~edD~-e~w~~lt~~~g-~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTv 214 (295)
T PF00113_consen 142 YKDLIKKY----P-IVSIEDPFDEDDW-EGWAKLTKRLG-DKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTV 214 (295)
T ss_dssp HHHHHHHS------EEEEESSS-TT-H-HHHHHHHHHHT-TTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSH
T ss_pred HHHHHHhc----C-eEEEEccccccch-HHHHHHHHhhh-cceeeecccccccchhhhhccchhhhccchhhhhhhhHHH
Confidence 77777654 4 7888888665665 45666655543 3687888 4456799999987764322222222211111
Q ss_pred -chhchHHHHHhcCCCeeeEe
Q 027845 187 -VEAEIVPTCSACRSSKLKIW 206 (218)
Q Consensus 187 -~~~~l~~~~~~~g~i~i~~~ 206 (218)
..-+.++.++++| +.++.-
T Consensus 215 te~lea~~~a~~~g-~~~vvS 234 (295)
T PF00113_consen 215 TETLEAVKLAKSAG-WGVVVS 234 (295)
T ss_dssp HHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHHCC-ceeecc
Confidence 1127788889999 776554
No 141
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=46.73 E-value=1.9e+02 Score=25.02 Aligned_cols=25 Identities=4% Similarity=0.109 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccC
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSD 59 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~ 59 (218)
.+.++..++++..-+.|+..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4667889999999999999999764
No 142
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=46.44 E-value=1.2e+02 Score=25.03 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHcCCC--------------------------ccceEeeecCCCCCCH---HHHHHHHHHHHHhCCc
Q 027845 101 DPAYVRACCEASLKRLDID--------------------------CIDLYYQHRVDTKIPI---EVTIGELKKLVEEGKI 151 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~--------------------------~lDl~~lh~~d~~~~~---~~~~~~l~~l~~~G~i 151 (218)
+.++ ++.++++|++.|.. ..|++++..|-...|. .++.+-|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3444 67777777777643 5788888888766665 368999999999987
Q ss_pred CEEecCcccHHHHHHHhcC
Q 027845 152 KYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 152 r~iGvs~~~~~~l~~~~~~ 170 (218)
.|=+.+|+...+.+..+.
T Consensus 191 -tIl~vtHDL~~v~~~~D~ 208 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFDR 208 (254)
T ss_pred -EEEEEeCCcHHhHhhCCE
Confidence 777788888877776544
No 143
>PLN02590 probable tyrosine decarboxylase
Probab=45.58 E-value=1e+02 Score=28.50 Aligned_cols=23 Identities=4% Similarity=-0.137 Sum_probs=20.4
Q ss_pred hhchHHHHHhcCCCeeeEehhhHH
Q 027845 188 EAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 188 ~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
.+++.+.|+++| +=+++=..++|
T Consensus 306 l~~Ia~i~~~~g-~WlHVDaA~GG 328 (539)
T PLN02590 306 LVPLGNIAKKYG-IWLHVDAAYAG 328 (539)
T ss_pred HHHHHHHHHHhC-CeEEEecchhh
Confidence 368999999999 89999999988
No 144
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=45.35 E-value=1.8e+02 Score=24.13 Aligned_cols=127 Identities=12% Similarity=-0.008 Sum_probs=65.9
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccCCc--------CCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHH
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSDIY--------GPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYV 105 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Y--------g~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i 105 (218)
..+.++..++.....+.|+..||....- -....++.+.++-+..++..+.......... ....-|..+
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~----~~~~~p~~~ 92 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV----GYRHYPDDV 92 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc----CccCCCcHH
Confidence 3466778888888889999999987521 1122344444433334444444333311000 001122333
Q ss_pred -HHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEec-----CcccHHHHHHHhcC
Q 027845 106 -RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL-----SEACAATIRRAHAV 170 (218)
Q Consensus 106 -~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGv-----s~~~~~~l~~~~~~ 170 (218)
+..++.+. +.|++.+.++ .+..+++.+.+..+..++.|..-..++ +.++++.+.++.+.
T Consensus 93 ~~~di~~~~-~~g~~~iri~-----~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 93 VELFVEKAA-KNGIDIFRIF-----DALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKE 157 (275)
T ss_pred HHHHHHHHH-HcCCCEEEEe-----ecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence 33333333 3455443332 223446778888888888886543333 34666665555433
No 145
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=45.25 E-value=49 Score=29.09 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhC-CcCEEecCc---ccHHHHHHHhcC-CCeeEEcc---cCCcccccchhchHHHHHhcCCCeee
Q 027845 138 TIGELKKLVEEG-KIKYIGLSE---ACAATIRRAHAV-HPITAVQL---EWSLWSRDVEAEIVPTCSACRSSKLK 204 (218)
Q Consensus 138 ~~~~l~~l~~~G-~ir~iGvs~---~~~~~l~~~~~~-~~~~~~q~---~~n~~~~~~~~~l~~~~~~~g~i~i~ 204 (218)
+++.++.|..+| .|.++.|.+ .+++++++++.. ..+..+|. +.-.+ ++-+++-+.|+++| +-++
T Consensus 104 Vl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~I--QpI~ei~~i~k~~~-i~fH 175 (386)
T COG1104 104 VLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTI--QPIAEIGEICKERG-ILFH 175 (386)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeec--ccHHHHHHHHHHcC-CeEE
Confidence 555555554555 555665554 456666666544 22222322 22222 22257777788777 5444
No 146
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.22 E-value=2.4e+02 Score=26.86 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHHHCCCCeeecc--CCcCCCcHHHHHHHHhcCCCCCCEEEEe--ccCCCCCCC-----C----CCCC
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTS--DIYGPYTNEILVGKALKGGMRERVELAT--KFGISFADG-----G----KIRG 100 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta--~~Yg~g~se~~lg~~l~~~~r~~~~I~t--K~~~~~~~~-----~----~~~~ 100 (218)
..|.++.++.++...+.|+.-|-.+ ..|-+-..|..+++.+++.. .++.|++ ++++..... . .-..
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 4688889999999999999966544 44666689999999999954 6777777 777643210 0 0111
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCC
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDT 131 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~ 131 (218)
--....++++..|+.-|.+ ..++++.+...
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGg 243 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGG 243 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCc
Confidence 2244566677777777765 67888877643
No 147
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.08 E-value=1.6e+02 Score=25.54 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=60.5
Q ss_pred CCCEEEEeccCCCCCC--------CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeec-CCCCCCHHHHHHHHHHHHHhC
Q 027845 79 RERVELATKFGISFAD--------GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTKIPIEVTIGELKKLVEEG 149 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~--------~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d~~~~~~~~~~~l~~l~~~G 149 (218)
|..++|||-+|-.... +.....+++.|..++...-+. ..++-+.+-. -++....+++.++++.+.+..
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhcc
Confidence 5667788777654421 123457889999998866322 2344444444 455566788999999988764
Q ss_pred Cc----CEEecCcccHH-HHHHHhcCCCeeEEcccCC
Q 027845 150 KI----KYIGLSEACAA-TIRRAHAVHPITAVQLEWS 181 (218)
Q Consensus 150 ~i----r~iGvs~~~~~-~l~~~~~~~~~~~~q~~~n 181 (218)
-. |.|-||+.... .+.++.+..+ ....+..|
T Consensus 179 g~~~s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLh 214 (345)
T PRK14466 179 GYGWSPKRITVSTVGLKKGLKRFLEESE-CHLAISLH 214 (345)
T ss_pred ccCcCCceEEEEcCCCchHHHHHhhccC-cEEEEEcC
Confidence 43 67878876643 3666655433 23345444
No 148
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=45.01 E-value=1.6e+02 Score=25.62 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=53.7
Q ss_pred EeeecCCC-----------CCCHHHHHHHHHHHHHhCCcCEEecC-------c---ccHHHHHHHhcCCCeeEEcccCCc
Q 027845 124 YYQHRVDT-----------KIPIEVTIGELKKLVEEGKIKYIGLS-------E---ACAATIRRAHAVHPITAVQLEWSL 182 (218)
Q Consensus 124 ~~lh~~d~-----------~~~~~~~~~~l~~l~~~G~ir~iGvs-------~---~~~~~l~~~~~~~~~~~~q~~~n~ 182 (218)
+.+|.|+. ..+++++.++.+...+... +.|-+- | ..+.+|.+++...+-.++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 67898854 2456788888888776555 444221 3 334456666666777999999999
Q ss_pred ccccc-----h---hchHHHHHhcCCCeeeEehhh
Q 027845 183 WSRDV-----E---AEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 183 ~~~~~-----~---~~l~~~~~~~g~i~i~~~spl 209 (218)
..... . ....+...++| +.+....+-
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~g-v~~tvR~~~ 328 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAG-VLVTVRKTR 328 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCC-eeEEecccc
Confidence 87632 1 24566667777 666655443
No 149
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=44.91 E-value=48 Score=29.08 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=41.2
Q ss_pred cHHHHHHHHhcCCCCCCEEEEeccCCCCCC---CCCCCCC----HHHHHHHHHHHHHHcCCCccceEeeecCCCC
Q 027845 65 TNEILVGKALKGGMRERVELATKFGISFAD---GGKIRGD----PAYVRACCEASLKRLDIDCIDLYYQHRVDTK 132 (218)
Q Consensus 65 ~se~~lg~~l~~~~r~~~~I~tK~~~~~~~---~~~~~~~----~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~ 132 (218)
.++..+.+.+++....=+||-||+...... .....++ .+.+++.+.+.|++-|+....+|++-+.+..
T Consensus 128 ~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 128 ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 688889999988666678899997641100 0111233 3567777888888889999999999998754
No 150
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=44.56 E-value=1.4e+02 Score=25.86 Aligned_cols=87 Identities=10% Similarity=0.179 Sum_probs=52.4
Q ss_pred EeeecCCCC-----------CCHHHHHHHHHHHHH-hCC---cCEEecC--cccHHH---HHHHhcCCCeeEEcccCCcc
Q 027845 124 YYQHRVDTK-----------IPIEVTIGELKKLVE-EGK---IKYIGLS--EACAAT---IRRAHAVHPITAVQLEWSLW 183 (218)
Q Consensus 124 ~~lh~~d~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~---l~~~~~~~~~~~~q~~~n~~ 183 (218)
+.||.+++. .+++++++++.++.+ .|. |+++=+. |-+.+. +.++++..+..++-++||++
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 678988632 246788888887654 442 1233222 333444 55555556678888999986
Q ss_pred ccc----c-h---hchHHHHHhcCCCeeeEehhhHH
Q 027845 184 SRD----V-E---AEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 184 ~~~----~-~---~~l~~~~~~~g~i~i~~~spl~g 211 (218)
... + . ..+.+..+++| +.+......+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~g-i~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYG-FTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-CeEEEeCCCCc
Confidence 531 1 1 14566778889 88877665543
No 151
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.30 E-value=1.8e+02 Score=23.97 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccC
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSD 59 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~ 59 (218)
..+.++..++.+..-+.||..|+...
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~ 41 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGY 41 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeec
Confidence 34668889999998999999999874
No 152
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=44.23 E-value=20 Score=28.23 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC-cccHHHHHHHhcCCCeeEEcccCCc
Q 027845 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWSL 182 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 182 (218)
.+..+|.||+=+.+. |.....+ ..+.+.++.+.-.-+.+||. |.+++++.++.+...++++|+.-+-
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecC--CCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 356789888877643 4322211 23344455444444488876 4788889999999999999987554
No 153
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=44.21 E-value=45 Score=25.75 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEcccCCcccccchhchHHHHHhcC
Q 027845 134 PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCSACR 199 (218)
Q Consensus 134 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 199 (218)
+.+++-+++++++++| |+++.||. -|++.++.+|..+.+.+++.|
T Consensus 132 d~~~v~~~~~~l~~~g-v~avAV~~--------------------~fS~~np~hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKG-VEAVAVSL--------------------LFSYRNPEHEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCC-CCEEEEEC--------------------ccCCCCHHHHHHHHHHHHhcC
Confidence 3467888888888887 88888774 334555555556666666554
No 154
>PLN02880 tyrosine decarboxylase
Probab=43.98 E-value=1.4e+02 Score=27.11 Aligned_cols=88 Identities=8% Similarity=-0.040 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCccceEeeecCC---CCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEcccCC
Q 027845 105 VRACCEASLKRLDIDCIDLYYQHRVD---TKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWS 181 (218)
Q Consensus 105 i~~~~~~sL~~Lg~~~lDl~~lh~~d---~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n 181 (218)
.+-++++++.-||+..=.+..+.... ...+.+.+-+++++.+++|++=.+=|.+.. ..+
T Consensus 190 aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataG------------------TT~ 251 (490)
T PLN02880 190 THSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVG------------------TTS 251 (490)
T ss_pred chHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecC------------------CCc
Confidence 35555666666665432333333321 124455555666666666654333222111 111
Q ss_pred cccccchhchHHHHHhcCCCeeeEehhhHH
Q 027845 182 LWSRDVEAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
-..-.+.+++.+.|+++| +-+++=..++|
T Consensus 252 ~GaiDpl~eI~~i~~~~~-iwlHVDaA~gg 280 (490)
T PLN02880 252 STAVDPLLELGKIAKSNG-MWFHVDAAYAG 280 (490)
T ss_pred CcccCcHHHHHHHHHHcC-CEEEEehhhHH
Confidence 111223368999999999 88888898887
No 155
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=43.73 E-value=1.2e+02 Score=21.87 Aligned_cols=63 Identities=5% Similarity=-0.124 Sum_probs=46.2
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC---ccceEeeecCCCC-CCHHHHHHHHHHHHHh
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID---CIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~---~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~ 148 (218)
+|=-+.|+-|+|.. ..+..+++.+.++.+.+..+ -.|++++-.+... .++.++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~A--------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNA--------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccch--------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 56668888888742 45788888888888877643 4699999988654 4677777777776554
No 156
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=43.65 E-value=2e+02 Score=25.05 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=64.0
Q ss_pred CCCEEEEeccCCCCCC--------CCCCCCCHHHHHHHHHHHHHHcCCC---ccc-eEeeecCCCCCCHHHHHHHHHHHH
Q 027845 79 RERVELATKFGISFAD--------GGKIRGDPAYVRACCEASLKRLDID---CID-LYYQHRVDTKIPIEVTIGELKKLV 146 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~--------~~~~~~~~~~i~~~~~~sL~~Lg~~---~lD-l~~lh~~d~~~~~~~~~~~l~~l~ 146 (218)
|..+.|+|-+|-.... |.....+...|..|+....++++.. .+. +++.---++...++.+..+++-+.
T Consensus 100 r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~ 179 (349)
T COG0820 100 RNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIIN 179 (349)
T ss_pred CceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhhc
Confidence 5557777777754322 2456789999999999999999864 232 333333344455677888888777
Q ss_pred H-hCC--c-CEEecCccc-HHHHHHHhcCCCeeEEcccCCccc
Q 027845 147 E-EGK--I-KYIGLSEAC-AATIRRAHAVHPITAVQLEWSLWS 184 (218)
Q Consensus 147 ~-~G~--i-r~iGvs~~~-~~~l~~~~~~~~~~~~q~~~n~~~ 184 (218)
. .|. . |.|=+|+.. ...|.++.+..--...++..|.-+
T Consensus 180 ~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~n 222 (349)
T COG0820 180 DDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPN 222 (349)
T ss_pred CcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCC
Confidence 3 222 1 567777755 456666664322234444444333
No 157
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=43.46 E-value=1.5e+02 Score=29.10 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC--------------------------ccceEeeecCCCCCCH---HHHHHHHHHHHHh
Q 027845 98 IRGDPAYVRACCEASLKRLDID--------------------------CIDLYYQHRVDTKIPI---EVTIGELKKLVEE 148 (218)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~--------------------------~lDl~~lh~~d~~~~~---~~~~~~l~~l~~~ 148 (218)
.+..+.++.+.++..|+.++.. ...++++..|....|+ ..+|+...++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3456677888888888877632 4567777777655554 3699999999999
Q ss_pred CCcCEEecCcccHHHHHHHhcC
Q 027845 149 GKIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 149 G~ir~iGvs~~~~~~l~~~~~~ 170 (218)
|+ ++=+.+|+.++.+.+-..
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhh
Confidence 99 899999999998888555
No 158
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=43.41 E-value=1.6e+02 Score=26.39 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeec-CC----------CCC-CHH---HHH-HHHHHHHHhCCcCEEecCcccH
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHR-VD----------TKI-PIE---VTI-GELKKLVEEGKIKYIGLSEACA 161 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d----------~~~-~~~---~~~-~~l~~l~~~G~ir~iGvs~~~~ 161 (218)
.+.+.+++.++..+ +++.+++.++.+-. |. ... +.+ +.+ .+.+.|.+.|.. .+++|+|..
T Consensus 215 qt~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~ye~s~far 290 (453)
T PRK09249 215 QTPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQ-YIGMDHFAL 290 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 56777777777665 47888887775431 10 001 111 223 344556667764 477877764
No 159
>PRK06256 biotin synthase; Validated
Probab=43.10 E-value=2.1e+02 Score=24.28 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHHHHCCCCeee-ccCCcCCCcH-HHHHHHHhcCCCC-CCEEEEeccCCCCCCCCCCCCCHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLD-TSDIYGPYTN-EILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~D-ta~~Yg~g~s-e~~lg~~l~~~~r-~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (218)
.+.++..+.++.+.+.|++.|- .+..++.... -+.+-+.++.+.+ -.+.+.+-.+. .+++.+ +
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~---------l~~e~l-----~ 156 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL---------LTEEQA-----E 156 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc---------CCHHHH-----H
Confidence 4678889999999999986332 2223322111 1234344444221 22323322221 233333 3
Q ss_pred HHHHcCCCccceEe------eecCCCCCCHHHHHHHHHHHHHhCCcCE----EecCcccHHHHHHHh
Q 027845 112 SLKRLDIDCIDLYY------QHRVDTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAH 168 (218)
Q Consensus 112 sL~~Lg~~~lDl~~------lh~~d~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~ 168 (218)
.|++.|++.+.+-+ +........+++.+++++.+++.|.--. +|+ +.+.+.+.+.+
T Consensus 157 ~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~ 222 (336)
T PRK06256 157 RLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHA 222 (336)
T ss_pred HHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHH
Confidence 46677766543310 0111122356788999999999996322 345 45555544443
No 160
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=43.03 E-value=2.2e+02 Score=24.47 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=55.6
Q ss_pred HHHHHcCCCccceEeeec-CCC-CCCHHHHHHHHHHHHHhCCc-CEEecCcc---cHHHHHHHhcCC---CeeEEcccCC
Q 027845 111 ASLKRLDIDCIDLYYQHR-VDT-KIPIEVTIGELKKLVEEGKI-KYIGLSEA---CAATIRRAHAVH---PITAVQLEWS 181 (218)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~-~d~-~~~~~~~~~~l~~l~~~G~i-r~iGvs~~---~~~~l~~~~~~~---~~~~~q~~~n 181 (218)
+.-+.+|.++||+-+.-. |+. +...++....++...+.=.+ -.|..|.. +++.|++.++.. ++-++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 344688888888854332 221 22344555555555443233 23665533 788888887762 24333222
Q ss_pred cccccchhchHHHHHhcCCCeeeEehhh
Q 027845 182 LWSRDVEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 182 ~~~~~~~~~l~~~~~~~g~i~i~~~spl 209 (218)
...-+.+.+.|+++| ..+++.+|.
T Consensus 161 ---~en~~~i~~lA~~y~-~~Vva~s~~ 184 (319)
T PRK04452 161 ---EDNYKKIAAAAMAYG-HAVIAWSPL 184 (319)
T ss_pred ---HHHHHHHHHHHHHhC-CeEEEEcHH
Confidence 111258999999999 999999876
No 161
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=43.00 E-value=1.3e+02 Score=22.02 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=42.1
Q ss_pred CCCCEEEEec-cCCCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEeeecCCCC-CCHHHHHHHHHHHHHh
Q 027845 78 MRERVELATK-FGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (218)
Q Consensus 78 ~r~~~~I~tK-~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~ 148 (218)
+|=.+.|+-| ++. . ..+..+++.++++.+... ..-.|++++..+... .+..++.+.|..|.+.
T Consensus 46 ~RiG~~VsKK~~g~-A-------V~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 46 PRLGLVIGKKSVKL-A-------VDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred ccEEEEEecccCcc-H-------hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3444666666 442 2 457888888888887653 345899999988654 4666777776666544
No 162
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.88 E-value=84 Score=24.98 Aligned_cols=85 Identities=11% Similarity=0.099 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCC-CeeEEccc
Q 027845 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVH-PITAVQLE 179 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~ 179 (218)
++...+- -+.|-+-|+.-+.+=+ - ..+.++.+++++++.-=-.||.-+ .++++.+++++.. .|-
T Consensus 15 ~~~a~~i-a~al~~gGi~~iEit~---~-----tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi----- 80 (201)
T PRK06015 15 VEHAVPL-ARALAAGGLPAIEITL---R-----TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI----- 80 (201)
T ss_pred HHHHHHH-HHHHHHCCCCEEEEeC---C-----CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE-----
Confidence 4444433 3344455655444422 1 123555666666554335688877 6888888888773 331
Q ss_pred CCcccccchhchHHHHHhcCCCeee
Q 027845 180 WSLWSRDVEAEIVPTCSACRSSKLK 204 (218)
Q Consensus 180 ~n~~~~~~~~~l~~~~~~~g~i~i~ 204 (218)
..+...++++++|+++| +.++
T Consensus 81 ---vSP~~~~~vi~~a~~~~-i~~i 101 (201)
T PRK06015 81 ---VSPGTTQELLAAANDSD-VPLL 101 (201)
T ss_pred ---ECCCCCHHHHHHHHHcC-CCEe
Confidence 12233368999999998 6553
No 163
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=42.86 E-value=2.2e+02 Score=24.50 Aligned_cols=97 Identities=13% Similarity=-0.005 Sum_probs=55.1
Q ss_pred CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceE-eeec-CCCC----CCHHHHHHHHHHHHHhCCcC
Q 027845 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLY-YQHR-VDTK----IPIEVTIGELKKLVEEGKIK 152 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~-~lh~-~d~~----~~~~~~~~~l~~l~~~G~ir 152 (218)
..++.|..|++.... .....+.+... .+-+.|+..|+|++++- -.|. +-.. .+........+++++.=.+-
T Consensus 202 G~d~~v~iRi~~~D~--~~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 278 (353)
T cd02930 202 GEDFIIIYRLSMLDL--VEGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIP 278 (353)
T ss_pred CCCceEEEEeccccc--CCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCC
Confidence 567888888875321 00123444433 34455778898888772 1231 1111 11111234455666665666
Q ss_pred EEecCc-ccHHHHHHHhcCCCeeEEcc
Q 027845 153 YIGLSE-ACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 153 ~iGvs~-~~~~~l~~~~~~~~~~~~q~ 178 (218)
=++.-+ ++++.++++++....|.+++
T Consensus 279 Vi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 279 VIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred EEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 565555 68899999998877777776
No 164
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.65 E-value=1.1e+02 Score=21.74 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCc
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 151 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~i 151 (218)
.++-.++..++..|+.||. +|+...+.+.--+.+-+..++|.|
T Consensus 69 ~sYptvR~kld~vlramgy---------~p~~e~~~~i~~~~i~~qle~Gei 111 (122)
T COG3877 69 ISYPTVRTKLDEVLRAMGY---------NPDSENSVNIGKKKIIDQLEKGEI 111 (122)
T ss_pred CccHHHHHHHHHHHHHcCC---------CCCCCChhhhhHHHHHHHHHcCCC
Confidence 4456799999999999996 465555544444445555566775
No 165
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=42.54 E-value=1.3e+02 Score=24.69 Aligned_cols=72 Identities=15% Similarity=0.052 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCC-CHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC
Q 027845 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 170 (218)
.+.+.++-.+..+-..+.+++++|-+=.+-.++.-. +..|++++-|.|+++|-+-.- -++-++-..+++.+.
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlP-Y~~dD~v~arrLee~ 150 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLP-YTTDDPVLARRLEEA 150 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEee-ccCCCHHHHHHHHhc
Confidence 456788888888889999999999888887776553 567999999999999865321 223344444444444
No 166
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=42.33 E-value=85 Score=29.17 Aligned_cols=59 Identities=24% Similarity=0.183 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHhcC-CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCccceEeeecCCCCCC
Q 027845 62 GPYTNEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL-DIDCIDLYYQHRVDTKIP 134 (218)
Q Consensus 62 g~g~se~~lg~~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-g~~~lDl~~lh~~d~~~~ 134 (218)
|.|.+-+-++++|.. .+|+++.|+--.. .++ +-+..||+|| |+.|+.-+.+-|-.+..+
T Consensus 630 g~gGsGkEF~~aLGGN~pREQFTvVmLTY-----------ERe---~VLm~sLeRL~gLPYLnKvvVVWNspk~P 690 (907)
T KOG2264|consen 630 GAGGSGKEFSKALGGNRPREQFTVVMLTY-----------ERE---AVLMGSLERLHGLPYLNKVVVVWNSPKDP 690 (907)
T ss_pred CCCCchHHHHHHhcCCCccceEEEEEEEe-----------hHH---HHHHHHHHHhhCCcccceEEEEeCCCCCC
Confidence 345788889999977 6899887765432 233 3466788888 699999888887544333
No 167
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=42.16 E-value=15 Score=36.00 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeecCCCCCCH
Q 027845 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI 135 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~ 135 (218)
...=++++......++.+++|||-|..|+.+..+
T Consensus 6 ~~~eRe~la~iiqqWNaNRLDLF~lS~PtEdLef 39 (1629)
T KOG1892|consen 6 RDEEREKLADIIQQWNANRLDLFELSQPTEDLEF 39 (1629)
T ss_pred hhhHHHHHHHHHHHhcccccceeeccCCCcccee
Confidence 3445778888889999999999999999765443
No 168
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=41.85 E-value=2e+02 Score=23.67 Aligned_cols=73 Identities=11% Similarity=-0.043 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhC-CcCEEecCcccH------HHHHHHhcCCCeeEEcccCCcccccchhchHHHHHhcCCCeeeEeh
Q 027845 135 IEVTIGELKKLVEEG-KIKYIGLSEACA------ATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 135 ~~~~~~~l~~l~~~G-~ir~iGvs~~~~------~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~s 207 (218)
++++++.+++++++. .+--+-++-+++ +.+.+......++.+-++.=+.+. ..++++.|+++|.-.+...+
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee--~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEE--SGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHH--HHHHHHHHHHCCCcEEEEEC
Confidence 356777888887652 333333333333 443333333444444444333322 24889999999944465666
Q ss_pred hh
Q 027845 208 II 209 (218)
Q Consensus 208 pl 209 (218)
|=
T Consensus 149 P~ 150 (256)
T TIGR00262 149 PN 150 (256)
T ss_pred CC
Confidence 64
No 169
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=41.53 E-value=1.3e+02 Score=26.69 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHCCCCee-eccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCC------CCCCCCCCCCHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLL-DTSDIYGPYTNEILVGKALKGGMRERVELATKFGIS------FADGGKIRGDPAYVRAC 108 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~-Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~------~~~~~~~~~~~~~i~~~ 108 (218)
+.+.-.+-++.|.+.|-..+ |.|. .| .-.++-.+.++. ..+-|.|--=+. ...+...+.+++.+...
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg--dl~~iR~~il~~---s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ 148 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG--DLDEIRRAIIEA---SPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDV 148 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC--CHHHHHHHHHHc---CCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHH
Confidence 55556677899999998744 6664 22 233333333322 112222210000 00012245778888888
Q ss_pred HHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEcccCCcccccch
Q 027845 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVE 188 (218)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 188 (218)
+++..+ +=+|.+-+|..- +.+.++.+++.|+ -.|+.+-...-+...+-. ...-||+....
T Consensus 149 ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~------n~~ENPlye~f- 208 (431)
T PRK13352 149 IEKQAK----DGVDFMTIHCGV-------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLH------NNKENPLYEHF- 208 (431)
T ss_pred HHHHHH----hCCCEEEEccch-------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHH------cCCcCchHHHH-
Confidence 887765 347889999852 6778889998886 455555444433333222 11233444433
Q ss_pred hchHHHHHhcCCCee
Q 027845 189 AEIVPTCSACRSSKL 203 (218)
Q Consensus 189 ~~l~~~~~~~g~i~i 203 (218)
+++++.|++++ +.+
T Consensus 209 D~lLeI~~~yD-Vtl 222 (431)
T PRK13352 209 DYLLEILKEYD-VTL 222 (431)
T ss_pred HHHHHHHHHhC-eee
Confidence 35556666655 443
No 170
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=41.37 E-value=46 Score=24.48 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.7
Q ss_pred ccchhchHHHHHhcCCCeeeEehhh
Q 027845 185 RDVEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 185 ~~~~~~l~~~~~~~g~i~i~~~spl 209 (218)
+....++++.|++.| |.+++|-.+
T Consensus 43 ~Dllge~v~a~h~~G-irv~ay~~~ 66 (132)
T PF14871_consen 43 RDLLGEQVEACHERG-IRVPAYFDF 66 (132)
T ss_pred cCHHHHHHHHHHHCC-CEEEEEEee
Confidence 444569999999999 999998665
No 171
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=41.03 E-value=2.5e+02 Score=24.63 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHCCCCeeeccCCcCC--CcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHc
Q 027845 39 DMIALIHHAINSGITLLDTSDIYGP--YTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (218)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~Dta~~Yg~--g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 116 (218)
+..++++.|++.|+.-|=+...|.. +.++..+-+.++...+-...|.+..-... ....+.+.+.++.+ ++.
T Consensus 168 ~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~------~~e~~av~~~~~~a-~~~ 240 (415)
T cd01297 168 KMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG------DSILEALDELLRLG-RET 240 (415)
T ss_pred HHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc------ccHHHHHHHHHHHH-HHh
Confidence 4567788889999987766555543 45666676666553344555666553221 12233444444433 234
Q ss_pred CCCccceEeeecCCCC----CCHHHHHHHHHHHHHhCCcCEEecCccc---HHHHHHHhcC
Q 027845 117 DIDCIDLYYQHRVDTK----IPIEVTIGELKKLVEEGKIKYIGLSEAC---AATIRRAHAV 170 (218)
Q Consensus 117 g~~~lDl~~lh~~d~~----~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~~ 170 (218)
|. -+.+.|-.... ....++++.+++.+++|.--...++.+. ...+.++++.
T Consensus 241 g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 241 GR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred CC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC
Confidence 53 35555643222 3456778888888888864344444432 4455555554
No 172
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=41.00 E-value=2.3e+02 Score=24.27 Aligned_cols=152 Identities=10% Similarity=0.064 Sum_probs=88.8
Q ss_pred HHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCC-CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 027845 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (218)
..++-.--+..|.+-=+-|..+| -|+..+.+.|+... ..-+-|..+ .+.. ..-.++++++ +++|+
T Consensus 15 ~~~~A~lYY~~gltQ~eIA~~Lg--iSR~~v~rlL~~Ar~~GiV~I~i~-~~~~--------~~~~Le~~L~---~~fgL 80 (321)
T COG2390 15 LARAAWLYYVEGLTQSEIAERLG--ISRATVSRLLAKAREEGIVKISIN-SPVE--------GCLELEQQLK---ERFGL 80 (321)
T ss_pred HHHHHHHHHhcCCCHHHHHHHhC--CCHHHHHHHHHHHHHCCeEEEEeC-CCCc--------chHHHHHHHH---HhcCC
Confidence 44444445678888888888888 78899999887732 222345555 2211 1223555544 78899
Q ss_pred CccceEeeecCCCCCCHH----HHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC------CCeeEEcccCCcccc---
Q 027845 119 DCIDLYYQHRVDTKIPIE----VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------HPITAVQLEWSLWSR--- 185 (218)
Q Consensus 119 ~~lDl~~lh~~d~~~~~~----~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~------~~~~~~q~~~n~~~~--- 185 (218)
++..++-...++...... ...+.|+++.+.|.+-.+|.. ..+..+.+. ....++|..=++-..
T Consensus 81 ~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdvigV~wG----rTv~a~~~~l~~~~~~~~~vV~l~GG~~~~~~~ 156 (321)
T COG2390 81 KEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDVIGVGWG----RTLSAVVDNLPPAPLRDVKVVQLTGGVGHADGS 156 (321)
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCEEEEecc----HHHHHHHHhcCcCccCCeEEEECCCCCCCCccc
Confidence 877776655444333332 357789999999995555532 233333333 235677775555521
Q ss_pred -cchhchHHHHHhcCCCeeeEehhh
Q 027845 186 -DVEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 186 -~~~~~l~~~~~~~g~i~i~~~spl 209 (218)
.+..-....+++.+.-....+.|+
T Consensus 157 ~~~~~~~~~~A~k~~~~~~~l~aP~ 181 (321)
T COG2390 157 YNANTIALRLAEKLGAESYLLPAPL 181 (321)
T ss_pred cCHHHHHHHHHHHhCCcEEeeecCc
Confidence 122244555666664566677776
No 173
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=40.92 E-value=1.4e+02 Score=21.82 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=45.0
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC----CccceEeeecCCCC-CCHHHHHHHHHHHHH
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI----DCIDLYYQHRVDTK-IPIEVTIGELKKLVE 147 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~----~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~ 147 (218)
+|=-+.|+-|++.. ..+..+++.++++++.+.. ...|++++..+... .++.++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~A--------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA--------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc--------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 45557788887632 4688899999999887643 45899999998643 466677777776554
No 174
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=40.49 E-value=2.1e+02 Score=23.60 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHCCCCee----eccCCcCCCcHHHHHHHHhcC---CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLL----DTSDIYGPYTNEILVGKALKG---GMRERVELATKFGISFADGGKIRGDPAYVRAC 108 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~----Dta~~Yg~g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~ 108 (218)
+-+++.++++.|.+.|+... |+.. .+.+.+-+.++. ..-+.+.|.--.|.. .|+.+.+-
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~~~~a~~-----~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~---------~P~~v~~l 172 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFNLMAISG-----YSDEELLELLELVNEIKPDVFYIVDSFGSM---------YPEDIKRI 172 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEEEEeecC-----CCHHHHHHHHHHHHhCCCCEEEEecCCCCC---------CHHHHHHH
Confidence 45678888888888887422 3322 234444444433 356677777777754 48888888
Q ss_pred HHHHHHHcCCCccceEeeecCCC
Q 027845 109 CEASLKRLDIDCIDLYYQHRVDT 131 (218)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~ 131 (218)
++...++++.+ + -+-+|..+.
T Consensus 173 v~~l~~~~~~~-~-~i~~H~Hn~ 193 (266)
T cd07944 173 ISLLRSNLDKD-I-KLGFHAHNN 193 (266)
T ss_pred HHHHHHhcCCC-c-eEEEEeCCC
Confidence 88877777621 1 245676544
No 175
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=40.45 E-value=2e+02 Score=23.40 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCc-HHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYT-NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~-se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
+.+++.+.+..+.+.+.+.++---.|-... +...+-..+.+..++.-+|.|=-.... |.....+.+.-.+-++...+
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~E--GG~~~~~~~~~i~ll~~la~ 89 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKE--GGEFPGSEEEYIELLKKLAE 89 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhh--cCCCCCCHHHHHHHHHHHHh
Confidence 556788888999999988877766666311 223333444443444434444322111 11223556666666777777
Q ss_pred HcCCCccce----------------------EeeecCCCCCCHHHHHHHHHHHHHhC-CcCEEecCcccHH
Q 027845 115 RLDIDCIDL----------------------YYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAA 162 (218)
Q Consensus 115 ~Lg~~~lDl----------------------~~lh~~d~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~ 162 (218)
.-+.+|+|+ +..|+.+...++++..+.|.++.+.| -|-.|-+.-.+.+
T Consensus 90 ~~~~d~iDiEl~~~~~~~~~~~~~~~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~~ 160 (231)
T COG0710 90 LNGPDYIDIELSSPEDDVKEIIKFAKKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKE 160 (231)
T ss_pred hcCCCEEEEEccCcchhHHHHHhccccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCHH
Confidence 666888886 22333333344566666666666666 4444444444444
No 176
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=40.28 E-value=2.3e+02 Score=23.95 Aligned_cols=133 Identities=11% Similarity=0.073 Sum_probs=76.2
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCC---------cCCCc----HHHHHHHHhcCCC-CCCEEEEeccCCCCCCCCCCCCC
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDI---------YGPYT----NEILVGKALKGGM-RERVELATKFGISFADGGKIRGD 101 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~---------Yg~g~----se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~ 101 (218)
++++..++.+.+.+.|+..||.--. |+ |. ..+.+.+.++.+. +-.+-|+.|+...+. ..
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~------~~ 145 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD------DA 145 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC------CC
Confidence 5677888888888999998886322 21 11 2244445554421 123567888743221 01
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeecCCCCCCH--HHHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCCCeeEEcc
Q 027845 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 178 (218)
.... ..+-+.|+..|+ |.+.+|........ .-.|+.+.++++.=.+--|+... .+++.+.++++....+.+++
T Consensus 146 ~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 146 HINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred cchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 1112 234445667775 55566753221111 12477777887765676777666 67888888886655666666
Q ss_pred c
Q 027845 179 E 179 (218)
Q Consensus 179 ~ 179 (218)
-
T Consensus 222 g 222 (319)
T TIGR00737 222 G 222 (319)
T ss_pred C
Confidence 3
No 177
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=40.25 E-value=2e+02 Score=25.00 Aligned_cols=95 Identities=7% Similarity=-0.015 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCCccceEeeecCCCC---CCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEccc-
Q 027845 104 YVRACCEASLKRLDIDCIDLYYQHRVDTK---IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLE- 179 (218)
Q Consensus 104 ~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~- 179 (218)
.-+..+-+.|.++|+++|++-..-.|... .+.+++++++.+ ...++..+++ .+...++++++... +.+.+.
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~-~~v~i~~ 142 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGA-KEVAVFA 142 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCc-CEEEEEE
Confidence 35566777799999999999765555322 233455555543 2234544553 47888888887732 122221
Q ss_pred --------CCcccc--cch---hchHHHHHhcCCCeee
Q 027845 180 --------WSLWSR--DVE---AEIVPTCSACRSSKLK 204 (218)
Q Consensus 180 --------~n~~~~--~~~---~~l~~~~~~~g~i~i~ 204 (218)
.|+-.. +.. .+++++++++| ..+.
T Consensus 143 s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~G-l~v~ 179 (347)
T PLN02746 143 SASESFSKSNINCSIEESLVRYREVALAAKKHS-IPVR 179 (347)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CeEE
Confidence 111111 111 26888999999 7663
No 178
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.04 E-value=2.3e+02 Score=24.31 Aligned_cols=102 Identities=13% Similarity=0.012 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeec--------CCCCCCHHHHHHHHHHHHHhCCcCEEecCc---ccHHHHHHH
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHR--------VDTKIPIEVTIGELKKLVEEGKIKYIGLSE---ACAATIRRA 167 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~--------~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~l~~~ 167 (218)
.++.+.+. ++-+.|.+.|+++|++-..-. -....+..+.++++.+.. ...+...+.. .+.+.++.+
T Consensus 21 ~f~~~~~~-~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~~a 97 (337)
T PRK08195 21 QYTLEQVR-AIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLKMA 97 (337)
T ss_pred ccCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHHHH
Confidence 35555544 455568899999888853211 011122233444443322 2233333221 245667666
Q ss_pred hcCCCeeEEcccCCcccccchhchHHHHHhcCCCeeeE
Q 027845 168 HAVHPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 168 ~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~ 205 (218)
.+. .++++.+..+.-+.....+.+++++++| ..+..
T Consensus 98 ~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G-~~v~~ 133 (337)
T PRK08195 98 YDA-GVRVVRVATHCTEADVSEQHIGLARELG-MDTVG 133 (337)
T ss_pred HHc-CCCEEEEEEecchHHHHHHHHHHHHHCC-CeEEE
Confidence 655 3344444443333333357888889988 65544
No 179
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=39.95 E-value=1.5e+02 Score=21.80 Aligned_cols=61 Identities=8% Similarity=-0.008 Sum_probs=38.6
Q ss_pred CCCEEEEec-cCCCCCCCCCCCCCHHHHHHHHHHHHHHc----CC----------CccceEeeecC--CCCCCHHHHHHH
Q 027845 79 RERVELATK-FGISFADGGKIRGDPAYVRACCEASLKRL----DI----------DCIDLYYQHRV--DTKIPIEVTIGE 141 (218)
Q Consensus 79 r~~~~I~tK-~~~~~~~~~~~~~~~~~i~~~~~~sL~~L----g~----------~~lDl~~lh~~--d~~~~~~~~~~~ 141 (218)
|=-+.|+-| ++. . ..+..+++.++++.+.. .. ..+|++++..+ ....+.+++-+.
T Consensus 51 RvG~sVsKK~~g~-A-------V~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~ 122 (133)
T PRK01903 51 SVLFSVSKKRVPR-A-------VKRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRRE 122 (133)
T ss_pred eEEEEEecccCCc-h-------hhhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHH
Confidence 334555666 443 2 45778888888887663 32 24799999988 333456777666
Q ss_pred HHHHHH
Q 027845 142 LKKLVE 147 (218)
Q Consensus 142 l~~l~~ 147 (218)
|.+|.+
T Consensus 123 l~~ll~ 128 (133)
T PRK01903 123 MRKLLQ 128 (133)
T ss_pred HHHHHH
Confidence 666554
No 180
>PRK08508 biotin synthase; Provisional
Probab=39.67 E-value=2.2e+02 Score=23.60 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHHHCCCCeee
Q 027845 35 EPEPDMIALIHHAINSGITLLD 56 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~D 56 (218)
.+.++..+.++.|.+.|++-|-
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~ 61 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFC 61 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 4778888888999999998664
No 181
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.62 E-value=1.6e+02 Score=25.81 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=63.7
Q ss_pred CCCEEEEeccCCCCCC--------CCCCCCCHHHHHHHHHHHHHHcCC-------------Ccc-ceEeeecCCCCCCHH
Q 027845 79 RERVELATKFGISFAD--------GGKIRGDPAYVRACCEASLKRLDI-------------DCI-DLYYQHRVDTKIPIE 136 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~--------~~~~~~~~~~i~~~~~~sL~~Lg~-------------~~l-Dl~~lh~~d~~~~~~ 136 (218)
|..+.|||-+|-.... |.....++..|..|+....+.++. ..+ -++++---++-...+
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Nyd 185 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYD 185 (371)
T ss_pred CceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHH
Confidence 7778888888765432 246788999999999887766632 112 223333334445567
Q ss_pred HHHHHHHHHHHhCC----cCEEecCcccHH-HHHHHhcCCCeeEEcccCC
Q 027845 137 VTIGELKKLVEEGK----IKYIGLSEACAA-TIRRAHAVHPITAVQLEWS 181 (218)
Q Consensus 137 ~~~~~l~~l~~~G~----ir~iGvs~~~~~-~l~~~~~~~~~~~~q~~~n 181 (218)
.++++++-+.+..- -|.|-||+.... .+.++.+.....-..+..|
T Consensus 186 nV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLH 235 (371)
T PRK14461 186 RWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLH 235 (371)
T ss_pred HHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeC
Confidence 89999999876521 256777775533 6777766543333444444
No 182
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.48 E-value=91 Score=20.86 Aligned_cols=59 Identities=8% Similarity=-0.062 Sum_probs=35.0
Q ss_pred CccceEeeecCCCCCCHHHHHHHHHHHHHhC-CcCEEecCc-ccHHHHHHHhcCCCeeEEcccC
Q 027845 119 DCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSE-ACAATIRRAHAVHPITAVQLEW 180 (218)
Q Consensus 119 ~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G-~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~ 180 (218)
..+|++++...-+..+..++++ ++++.+ .++-|-+++ .+.....++++..-.+++.-++
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~---~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLE---QIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHH---HHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred cCceEEEEEeeecccccccccc---ccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 3489999987655555445555 445544 677777775 4556666666554444444333
No 183
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=39.44 E-value=46 Score=28.31 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=55.4
Q ss_pred CCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHH
Q 027845 30 LYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACC 109 (218)
Q Consensus 30 ~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (218)
.||.+.+.++-.++++..-+.|.|.+ .|+ |.++.+...|+--.+ ..+. .+.+
T Consensus 7 FYG~PWs~e~R~~l~~f~~~~kmN~Y----iYA---------------PKdDpyhr~~Wre~Y--------p~~e-l~~l 58 (306)
T PF07555_consen 7 FYGRPWSHEDRLDLIRFLGRYKMNTY----IYA---------------PKDDPYHRSKWREPY--------PEEE-LAEL 58 (306)
T ss_dssp SSSS---HHHHHHHHHHHHHTT--EE----EE-----------------TT-TTTTTTTTS-----------HHH-HHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCceE----EEC---------------CCCChHHHhhhcccC--------CHHH-HHHH
Confidence 47777788889999999999999977 687 566665555654322 2333 3444
Q ss_pred HHHHHHcCCCccceEeeecCCCCC------CHHHHHHHHHHHHHhCCcCEEecC
Q 027845 110 EASLKRLDIDCIDLYYQHRVDTKI------PIEVTIGELKKLVEEGKIKYIGLS 157 (218)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~------~~~~~~~~l~~l~~~G~ir~iGvs 157 (218)
++..+.=....+++++-=.|.... +++.+.+.++++.+.| ||.+||.
T Consensus 59 ~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lG-vr~Fail 111 (306)
T PF07555_consen 59 KELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLG-VRSFAIL 111 (306)
T ss_dssp HHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE
T ss_pred HHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 444444444456776655564332 3456788888999887 5677654
No 184
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=39.40 E-value=1.4e+02 Score=21.25 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=42.4
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEeeecCCCC-CCHHHHHHHHHHHHHh
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 148 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~ 148 (218)
+|=-+.|+-|..... ..+..+++.++++.+... ....|++++-.+... .+..++.+.|..+.+.
T Consensus 45 ~R~G~~VsKK~~g~A-------V~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 45 PRLGLTVAKKNVKRA-------HERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred cEEEEEEEcccCcch-------hHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 344466666633222 457788888888887653 235699999888653 5677888877776553
No 185
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.34 E-value=2.3e+02 Score=23.78 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=51.9
Q ss_pred CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCC----------HHHHHHHHHHHHHh
Q 027845 79 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP----------IEVTIGELKKLVEE 148 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~----------~~~~~~~l~~l~~~ 148 (218)
.+++.|..|+...... ....+.+... .+-+.|+..|++++++ +......+ ....++.+.++++.
T Consensus 206 g~d~~i~vris~~~~~--~~g~~~~e~~-~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 279 (327)
T cd02803 206 GPDFPVGVRLSADDFV--PGGLTLEEAI-EIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIKKA 279 (327)
T ss_pred CCCceEEEEechhccC--CCCCCHHHHH-HHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHHHH
Confidence 4568888888754210 0113444433 3344556777665554 43322111 12234555566665
Q ss_pred CCcCEEecCcc-cHHHHHHHhcCCCeeEEcc
Q 027845 149 GKIKYIGLSEA-CAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 149 G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 178 (218)
=.+--++..+. +++.++++++....+.+++
T Consensus 280 ~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 280 VKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 45666666664 5888888888766676666
No 186
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=39.18 E-value=2.5e+02 Score=24.12 Aligned_cols=151 Identities=11% Similarity=0.040 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCC-cHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPY-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g-~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
+.++..+-.+.+.+.|++.|=.-- |.. ......=+++++.-.+++-|..=.... .+++...+ +-+.|+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~--------~~~~~A~~-~~~~l~ 206 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPRRDPDRVAAARRAIGPDAELFVDANGA--------YSRKQALA-LARAFA 206 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHHHHHHHHHHHHHHcCCCCeEEEECCCC--------CCHHHHHH-HHHHHH
Confidence 445566667777889999876432 211 111122244444222333333222211 33443222 222333
Q ss_pred HcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh--CCc-CEEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhc
Q 027845 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAE 190 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~--G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 190 (218)
.+ ++.++-.| .+. +-++.+.+|++. -.| -..|=|-++...+.++++....+++|....-.-- .....
T Consensus 207 ~~-----~~~~~EeP---~~~-~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ 277 (352)
T cd03328 207 DE-----GVTWFEEP---VSS-DDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQ 277 (352)
T ss_pred Hh-----CcchhhCC---CCh-hhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHH
Confidence 33 44444444 222 346777788877 333 3567777899999999998889999998775421 22258
Q ss_pred hHHHHHhcCCCeeeEeh
Q 027845 191 IVPTCSACRSSKLKIWS 207 (218)
Q Consensus 191 l~~~~~~~g~i~i~~~s 207 (218)
+.+.|+.+| +.++..+
T Consensus 278 ia~~A~a~g-i~~~~h~ 293 (352)
T cd03328 278 AAALAAAHH-VDLSAHC 293 (352)
T ss_pred HHHHHHHcC-CeeccCc
Confidence 999999999 8887664
No 187
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=38.83 E-value=1e+02 Score=27.48 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=53.8
Q ss_pred HHHcCCCccceEeeecCCC-CCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC--------CCeeEEcccCCcc
Q 027845 113 LKRLDIDCIDLYYQHRVDT-KIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--------HPITAVQLEWSLW 183 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~n~~ 183 (218)
++.+|+.|. ++.-|-. ...-.++. ..+-+.|-...+|..+.+++++++.+.. .|+-+|-+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Giss~eLV---aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIASAELV---VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCCCHHHH---HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 456777654 3344432 12222333 3455779999999999999888776544 25666554 3333
Q ss_pred cccchhchHHHHHhcCCCeeeEehh
Q 027845 184 SRDVEAEIVPTCSACRSSKLKIWSI 208 (218)
Q Consensus 184 ~~~~~~~l~~~~~~~g~i~i~~~sp 208 (218)
++..++.+++.|.++| +.++..|-
T Consensus 80 ~~~~e~~~v~l~le~g-V~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHG-VRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcC-CCEEEecc
Confidence 3333457899999999 87665553
No 188
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=38.33 E-value=1.1e+02 Score=22.89 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=45.3
Q ss_pred CcceecccccCCCC-CCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCC
Q 027845 18 SAQGLGCMAMSCLY-GPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGG 96 (218)
Q Consensus 18 s~lglG~~~~~~~~-~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~ 96 (218)
+++||-...= . +.++.....++.+++++..-... .+..++++..|-+...
T Consensus 48 ~RlG~sVSKK---vg~~AV~RNRiKR~lRE~fR~~~~~----------------------l~~~DiVviar~~~~~---- 98 (145)
T PRK04820 48 PRLGLAVSRK---VDTRAVGRNRIKRVLREAMRQLLPE----------------------LAPGDYVVVARSAAAK---- 98 (145)
T ss_pred cEEEEEEecc---ccCcchhHHHHHHHHHHHHHHhhhc----------------------cCCCCEEEEEeCCccc----
Confidence 4555544321 2 24566677888888888631111 1333677777776544
Q ss_pred CCCCCHHHHHHHHHHHHHHcCC
Q 027845 97 KIRGDPAYVRACCEASLKRLDI 118 (218)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~ 118 (218)
.+.+.+.+++...|++++.
T Consensus 99 ---~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 99 ---ASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred ---CCHHHHHHHHHHHHHHhCc
Confidence 7799999999999999875
No 189
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=38.32 E-value=1.7e+02 Score=22.79 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCC--CCCHHHHHHHHHHHHHhCCcCEEecCcccHH--HHHHHhcCCCeeEEcc
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDT--KIPIEVTIGELKKLVEEGKIKYIGLSEACAA--TIRRAHAVHPITAVQL 178 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~--~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~--~l~~~~~~~~~~~~q~ 178 (218)
......+...+++.+.. .+-+.+--.+. ........+.++.|++.|- .+.+.+++.. .+.. +...+|+.+-+
T Consensus 99 ~~~~~~l~~~l~~~~~~-~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~-l~~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLP-PQRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSY-LKRLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCC-HHHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHH-HHhCCCCeEEE
Confidence 34556677777776654 22333333321 2234456689999999998 5666665432 2333 33345666666
Q ss_pred cCCcccc--------cchhchHHHHHhcCCCeeeEe
Q 027845 179 EWSLWSR--------DVEAEIVPTCSACRSSKLKIW 206 (218)
Q Consensus 179 ~~n~~~~--------~~~~~l~~~~~~~g~i~i~~~ 206 (218)
..+.... ...+.++..|+..| +.+++-
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~via~ 209 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLG-LQVVAE 209 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCC-CeEEEe
Confidence 5544422 12346778888888 777654
No 190
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.09 E-value=1.1e+02 Score=29.18 Aligned_cols=94 Identities=9% Similarity=0.029 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh--CCcCEEecCcccHHHHHHHhcCCCeeEEc
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAVQ 177 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 177 (218)
.+.+.+++-++.....-...+.-+++|+..+... .+.+++|-+..++ +.+.+|.+++.....+..+..+ |.+
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR----Cq~ 177 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR----CLQ 177 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH----HHh
Confidence 3456666666655443334556789998876433 3566777777777 8899999998655444444433 566
Q ss_pred ccCCcccccc-hhchHHHHHhcC
Q 027845 178 LEWSLWSRDV-EAEIVPTCSACR 199 (218)
Q Consensus 178 ~~~n~~~~~~-~~~l~~~~~~~g 199 (218)
+.++.+.... .+.+...|.+.|
T Consensus 178 f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 178 FNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred cccCCCChHHHHHHHHHHHHHcC
Confidence 6666655542 223444455555
No 191
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.87 E-value=2.7e+02 Score=24.10 Aligned_cols=89 Identities=10% Similarity=0.117 Sum_probs=55.7
Q ss_pred CCCEEEEeccCCCCCC--------CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHH-hC
Q 027845 79 RERVELATKFGISFAD--------GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE-EG 149 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~--------~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~-~G 149 (218)
|..+.|++-.+-.... +.....+++.+..++....+..++++ +.+.-.-++...++++.++++.+.+ .|
T Consensus 102 ~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~--IvfmG~GEPl~n~~~vi~~l~~l~~~~g 179 (349)
T PRK14463 102 RNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRN--IVFMGMGEPLANLDNVIPALQILTDPDG 179 (349)
T ss_pred CcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccE--EEEecCCcchhcHHHHHHHHHHhhcccc
Confidence 5667777766543321 12345788999999887776655443 3444445555677889999999886 56
Q ss_pred C---cCEEecCccc-HHHHHHHhc
Q 027845 150 K---IKYIGLSEAC-AATIRRAHA 169 (218)
Q Consensus 150 ~---ir~iGvs~~~-~~~l~~~~~ 169 (218)
. .+.+-||+.. ...+.++..
T Consensus 180 l~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 180 LQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred cCcCCceEEEECCCchHHHHHHhh
Confidence 4 3677776533 345555544
No 192
>PTZ00413 lipoate synthase; Provisional
Probab=37.73 E-value=2.9e+02 Score=24.46 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=83.1
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccCCcC----CCcHHHHHHHHhcCCCC--CCEEEEeccCCCCCCCCCCCCCHHHHHH
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSDIYG----PYTNEILVGKALKGGMR--ERVELATKFGISFADGGKIRGDPAYVRA 107 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----~g~se~~lg~~l~~~~r--~~~~I~tK~~~~~~~~~~~~~~~~~i~~ 107 (218)
..|.++..+.-+++.+.|++|+=.+.... +|..+. +.++++.+.. .++-|..-++-.. .+.+.+++
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~-~a~~I~~Ir~~~p~~~IevligDf~-------g~~e~l~~ 247 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASH-VARCVELIKESNPELLLEALVGDFH-------GDLKSVEK 247 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHH-HHHHHHHHHccCCCCeEEEcCCccc-------cCHHHHHH
Confidence 45788888888999999999774444433 233444 4455555322 3455555544211 13333322
Q ss_pred HHHHHHHHcCCCccceEeeecCCC-----------CCCHHHHHHHHHHHHHh--CCcC-----EEecCcccHHHHHHHhc
Q 027845 108 CCEASLKRLDIDCIDLYYQHRVDT-----------KIPIEVTIGELKKLVEE--GKIK-----YIGLSEACAATIRRAHA 169 (218)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~-----------~~~~~~~~~~l~~l~~~--G~ir-----~iGvs~~~~~~l~~~~~ 169 (218)
|..-|. |. +-|+.+. ...+++.|+.|+..++. +.|. -+|+.....+.++-+.+
T Consensus 248 -----L~eAG~---dv-ynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~d 318 (398)
T PTZ00413 248 -----LANSPL---SV-YAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRD 318 (398)
T ss_pred -----HHhcCC---CE-EecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHH
Confidence 333343 33 3355321 23578889999988875 3332 25655544443333322
Q ss_pred C--CCeeEEcc-c------CC-cccc----cchhchHHHHHhcCCCeeeEehhh
Q 027845 170 V--HPITAVQL-E------WS-LWSR----DVEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 170 ~--~~~~~~q~-~------~n-~~~~----~~~~~l~~~~~~~g~i~i~~~spl 209 (218)
. ..++++.+ . -| +..+ +..+.+-+.+.+.| ...++-+||
T Consensus 319 LrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~G-f~~v~sgPl 371 (398)
T PTZ00413 319 LRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMG-FLYCASGPL 371 (398)
T ss_pred HHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcC-CceEEecCc
Confidence 2 22222222 1 01 1111 11236677788889 888888998
No 193
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=37.56 E-value=2.1e+02 Score=22.66 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=54.7
Q ss_pred HHHHHHHH--HHcCCCccceEeee-cCCCC-CCHH----HHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEc
Q 027845 106 RACCEASL--KRLDIDCIDLYYQH-RVDTK-IPIE----VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQ 177 (218)
Q Consensus 106 ~~~~~~sL--~~Lg~~~lDl~~lh-~~d~~-~~~~----~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 177 (218)
..++++.. ..-|.++||+---- +|... .+.+ .+...++.+++...=--+.+-+++++.++.+++. ..+++-
T Consensus 19 ~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~in 97 (210)
T PF00809_consen 19 DEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIIN 97 (210)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEE
T ss_pred HHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEE
Confidence 33444433 34489999994322 23211 2222 3455555555411123678888999999999988 333222
Q ss_pred ccCCcccccchhchHHHHHhcCCCeeeEeh
Q 027845 178 LEWSLWSRDVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 178 ~~~n~~~~~~~~~l~~~~~~~g~i~i~~~s 207 (218)
.-.+.-. .+++++.+++++ ..++++-
T Consensus 98 d~~~~~~---~~~~~~l~a~~~-~~vV~m~ 123 (210)
T PF00809_consen 98 DISGFED---DPEMLPLAAEYG-APVVLMH 123 (210)
T ss_dssp ETTTTSS---STTHHHHHHHHT-SEEEEES
T ss_pred ecccccc---cchhhhhhhcCC-CEEEEEe
Confidence 2211111 368999999999 7776653
No 194
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=37.44 E-value=84 Score=28.34 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=83.7
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC---CCCCCEEEEeccCCCCC------------------
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG---GMRERVELATKFGISFA------------------ 93 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~------------------ 93 (218)
.....+.+++..+++.+..-+|+++.-. .-|+.+-.++.+ .+.+-.=..|..+....
T Consensus 73 ~~~~~a~~~~~~~~~~nl~d~~~~p~a~--~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~ 150 (460)
T COG0076 73 RVPPVAAELLVSALNKNLGDPDESPAAA--ELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAE 150 (460)
T ss_pred CCHHHHHHHHHHHHhhcCCCcccChhHH--HHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhc
Confidence 3556688888888888888888876422 334444444433 11111111111111000
Q ss_pred ----CCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhC-CcCEEecCcccHHHHHHHh
Q 027845 94 ----DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAATIRRAH 168 (218)
Q Consensus 94 ----~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~ 168 (218)
.+...-.-++..+-+++++.+-||.+.--+..... +...+.+.+.+++++....| .|.-.|...+.
T Consensus 151 ~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G-------- 221 (460)
T COG0076 151 SGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTG-------- 221 (460)
T ss_pred ccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCC--------
Confidence 00001234566788899999999986433333332 55566777777777766666 22222332211
Q ss_pred cCCCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhHHh
Q 027845 169 AVHPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIKSY 212 (218)
Q Consensus 169 ~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~g~ 212 (218)
-+ ++-+++.+.|++.+ +-+++-+.++|+
T Consensus 222 -------------~i--Ddi~~ia~ia~~~~-i~lHVDAA~GG~ 249 (460)
T COG0076 222 -------------SI--DDIEELADIAEEYG-IWLHVDAAFGGF 249 (460)
T ss_pred -------------cc--CCHHHHHHHHHHcC-CcEEEEccccce
Confidence 11 22257888888888 888888888883
No 195
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=37.25 E-value=2.8e+02 Score=24.11 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCC-CcHHHHHHHHhcCCCC--CCEEEEeccCCCCCCCCCCCCCHHHHHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGP-YTNEILVGKALKGGMR--ERVELATKFGISFADGGKIRGDPAYVRACCEA 111 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~-g~se~~lg~~l~~~~r--~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~ 111 (218)
.+.++..+.++.+.+.|++.|--...-.. ...-+.+.+.++.+.+ .++ ..+.++ .+.+.+ +
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i--~i~~g~---------lt~e~l-----~ 167 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSV--SIEVQP---------LSEEEY-----A 167 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCc--eeccCC---------CCHHHH-----H
Confidence 47788899999999999997743211100 0122334444444221 122 223332 345544 5
Q ss_pred HHHHcCCCccceEeee----------cCCCCCCHHHHHHHHHHHHHhCC--cCE---EecCccc
Q 027845 112 SLKRLDIDCIDLYYQH----------RVDTKIPIEVTIGELKKLVEEGK--IKY---IGLSEAC 160 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh----------~~d~~~~~~~~~~~l~~l~~~G~--ir~---iGvs~~~ 160 (218)
.|++.|++++.+.+=- ......++++.+++++.+++.|. |-. +|+..+.
T Consensus 168 ~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~ 231 (371)
T PRK09240 168 ELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWR 231 (371)
T ss_pred HHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccH
Confidence 7888898866654322 11234478899999999999995 322 3555554
No 196
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=37.17 E-value=2.4e+02 Score=23.26 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCC---cCCC----cHHHHHHHHhcCCCC-CCEEEEeccCCCCCCCCCCCCCHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDI---YGPY----TNEILVGKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRA 107 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~---Yg~g----~se~~lg~~l~~~~r-~~~~I~tK~~~~~~~~~~~~~~~~~i~~ 107 (218)
+.++..+..+.+.+.|+..||.--. ...+ ...+.+.+.++...+ -++-|..|+.... +.+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~--------~~~~~~~ 180 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF--------DLEDIVE 180 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC--------CHHHHHH
Confidence 4567888888888999999986322 1111 233445555544211 1567888987543 3445554
Q ss_pred HHHHHHHHcCCCccceEeeecCCC-------------CC---C-----H-HHHHHHHHHHHHhC--CcCEEecCc-ccHH
Q 027845 108 CCEASLKRLDIDCIDLYYQHRVDT-------------KI---P-----I-EVTIGELKKLVEEG--KIKYIGLSE-ACAA 162 (218)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~-------------~~---~-----~-~~~~~~l~~l~~~G--~ir~iGvs~-~~~~ 162 (218)
-++ .++..|.| .+.+|+-.. .. . . .-.++.+.++++.= .+--|+... .+++
T Consensus 181 ~a~-~l~~~Gad---~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 181 LAK-AAERAGAD---GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred HHH-HHHHcCCC---EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 444 45667754 455553210 00 0 0 12466677776654 577777776 4577
Q ss_pred HHHHHhcCCCeeEEccc
Q 027845 163 TIRRAHAVHPITAVQLE 179 (218)
Q Consensus 163 ~l~~~~~~~~~~~~q~~ 179 (218)
.+.+++... .+.+|+-
T Consensus 257 da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 257 DVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHcC-ccHheEc
Confidence 777777643 5666653
No 197
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=37.10 E-value=2.2e+02 Score=22.81 Aligned_cols=96 Identities=23% Similarity=0.189 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHH-----HHHHHHHH
Q 027845 39 DMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYV-----RACCEASL 113 (218)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i-----~~~~~~sL 113 (218)
+.++.++.|++.|++-+-+.+.|. ....+.+.. .+..+-+..++.... ...+.- ..++++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~~-~~~~~~~vi~fp~g~-------~~~~~k~~~~~~~~ve~A- 85 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLAG-SGVKVGLVIGFPFGT-------STTEPKGYDQIVAEVEEA- 85 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHSTT-STSEEEEEESTTTSS-------STHHHHTCEEEHHHHHHH-
T ss_pred hHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhhc-cccccceEEEeCCCC-------CccccccccchHHHHHHH-
Confidence 789999999999999999888876 223333322 123555555554322 122222 4556655
Q ss_pred HHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh
Q 027845 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~ 148 (218)
.++|.+-+|++.-..+......+...+.+.+++++
T Consensus 86 ~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~ 120 (236)
T PF01791_consen 86 IRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEE 120 (236)
T ss_dssp HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHcCCceeeeeccccccccccHHHHHHHHHHHHHH
Confidence 57899999999888554444455555555555544
No 198
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.01 E-value=1.4e+02 Score=21.17 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCC---------CCC--CCCHHHHHHHHH
Q 027845 42 ALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADG---------GKI--RGDPAYVRACCE 110 (218)
Q Consensus 42 ~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~---------~~~--~~~~~~i~~~~~ 110 (218)
.+---.+++|.-|+-|-..|.-|. |.++---|-+ ..+++.+.+|+.+..+.+ .+. +-....++.++|
T Consensus 24 saYMpfl~nGglFVpTnk~y~iG~-evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~vr~~IE 101 (117)
T COG3215 24 SAYMPFLENGGLFVPTNKVYSIGE-EVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLKVRNQIE 101 (117)
T ss_pred HHHhHHHhcCcEEcccCCccccch-hhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhhHHHHHH
Confidence 333344689999999999997554 5555444433 356788888876544332 111 122346888888
Q ss_pred HHHHH
Q 027845 111 ASLKR 115 (218)
Q Consensus 111 ~sL~~ 115 (218)
..|..
T Consensus 102 ~~Lg~ 106 (117)
T COG3215 102 TLLGG 106 (117)
T ss_pred HHHHh
Confidence 87743
No 199
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=36.96 E-value=1.8e+02 Score=24.43 Aligned_cols=19 Identities=16% Similarity=0.217 Sum_probs=14.2
Q ss_pred HHHHHHHCCCCeeeccCCc
Q 027845 43 LIHHAINSGITLLDTSDIY 61 (218)
Q Consensus 43 ~l~~A~~~Gi~~~Dta~~Y 61 (218)
-+..=++.|||+||--..|
T Consensus 35 ~i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 35 NVSTQLALGARYFDFRPGY 53 (281)
T ss_pred cHHHHHhcCcEEEEEEeee
Confidence 3566689999999885444
No 200
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=36.89 E-value=2.5e+02 Score=25.13 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeee-cCC----------CCC-CHH---HHHH-HHHHHHHhCCcCEEecCcccH
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQH-RVD----------TKI-PIE---VTIG-ELKKLVEEGKIKYIGLSEACA 161 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh-~~d----------~~~-~~~---~~~~-~l~~l~~~G~ir~iGvs~~~~ 161 (218)
.+.+.+.+.++..++ ++.+++.++.+- .|. ... +.+ +.++ +.+.|.+.|. ..+++++|..
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 578888888886654 888888888661 121 001 122 2333 4455666675 6789999764
No 201
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=36.82 E-value=2.1e+02 Score=22.54 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccH----HHHHHHhcC
Q 027845 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACA----ATIRRAHAV 170 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~----~~l~~~~~~ 170 (218)
...+.+.+++.++.+|.+ +.+ + .+...+.++..+.++++.++| +-.|=++..++ ..+.++.+.
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~--~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~ 79 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEI--V--FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAA 79 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEE--E--EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCE-EEE--e--CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhc
Confidence 456888999999999863 233 2 344456678889999999887 77776665433 344444433
No 202
>PTZ00081 enolase; Provisional
Probab=36.70 E-value=3.1e+02 Score=24.63 Aligned_cols=96 Identities=10% Similarity=-0.027 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhC--CcCEEec--CcccHHHHHHHhcCCCeeE
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGL--SEACAATIRRAHAVHPITA 175 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~~~~~~l~~~~~~~~~~~ 175 (218)
.+++.+.+-+.+.++.++ ++++-.|=+.. -|+.+.+|.+.- .+.-+|= +..++..+.++++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~~----D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQD----DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCcc----cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 567777776666666654 56677664433 355555555543 5544443 2467999999999988889
Q ss_pred EcccCCccccc-chhchHHHHHhcCCCeeeE
Q 027845 176 VQLEWSLWSRD-VEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 176 ~q~~~n~~~~~-~~~~l~~~~~~~g~i~i~~ 205 (218)
+|+..|-.-.- ...++++.|+++| +.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~G-i~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNG-WGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcC-CcEEE
Confidence 99988754432 2248899999999 76654
No 203
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=36.37 E-value=49 Score=23.50 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcC
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYG 62 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg 62 (218)
+.+.+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 556788999999999999999999985
No 204
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=36.25 E-value=3.2e+02 Score=24.50 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecC-CCCCCHHHHHHHHHHHHHhCCcCEEecCccc---HHHHHHHhcCCCee
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRV-DTKIPIEVTIGELKKLVEEGKIKYIGLSEAC---AATIRRAHAVHPIT 174 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~-d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~~~~~~ 174 (218)
..+++.+.+.+++..+.++ .++.+-+-.| ++....+.+++.+..++++..=..+.+++.. ++.++++.+. .++
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~-gvd 135 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL-GVG 135 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC-CCC
Confidence 4788899999888877663 3566667664 4445556788999999988211256666533 6677777654 245
Q ss_pred EEcccCCcccc
Q 027845 175 AVQLEWSLWSR 185 (218)
Q Consensus 175 ~~q~~~n~~~~ 185 (218)
.+.+.++-.++
T Consensus 136 ~V~islka~d~ 146 (442)
T TIGR01290 136 HVTITINAIDP 146 (442)
T ss_pred eEEEeccCCCH
Confidence 66666655443
No 205
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=36.23 E-value=1.4e+02 Score=26.88 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHH
Q 027845 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRR 166 (218)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 166 (218)
...+.+...+.+.+.|+.||++ .|-+ .......+..-+++++|+++|++ +.+.|+ .+++++
T Consensus 46 ~~Rs~~~~~~~I~e~L~wLGI~-~De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~~ 106 (445)
T PRK12558 46 LERSKQEYADAIAEDLKWLGIN-WDRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYET--PEELEL 106 (445)
T ss_pred cccchHHHHHHHHHHHHHcCCC-CCcc----ccHHHHHHHHHHHHHHHHHCCCE-EEecCc--hHHHHH
Confidence 3456678899999999999997 4632 11222344567788999999995 667765 444443
No 206
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=36.15 E-value=1.5e+02 Score=28.79 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh--CCcCEEecCcccHHHHHHHhcCCCeeEEcc
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (218)
+.+.+++-++......-....-+|+|...+... .+.+++|-+..++ ..+++|-++|.....+..+ .-.|.++
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI----rSRCq~f 173 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV----LSRCLQF 173 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchh----hhheEEE
Confidence 355566666554433323355788888776433 2467777776666 5889999998644333232 3347777
Q ss_pred cCCcccccc-hhchHHHHHhcC
Q 027845 179 EWSLWSRDV-EAEIVPTCSACR 199 (218)
Q Consensus 179 ~~n~~~~~~-~~~l~~~~~~~g 199 (218)
.|..+.... .+.+...|++.|
T Consensus 174 ~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 174 NLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred ecCCcCHHHHHHHHHHHHHHcC
Confidence 777776652 234455566666
No 207
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=35.95 E-value=1.2e+02 Score=22.25 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 158 (218)
.+.+.+...+++..+. .-+.-.+=..|...+...+.+.|..+++.| +..+++..
T Consensus 81 v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEG----KKDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 4556666666654432 223334445778899999999999999999 55677755
No 208
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=35.94 E-value=80 Score=23.11 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCccceEeeecCCCCC-CHHHHHHHHHHHHHhCCcCEEec
Q 027845 106 RACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGL 156 (218)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~-~~~~~~~~l~~l~~~G~ir~iGv 156 (218)
+..+++.|+.+....+|+++++..|... +..++...++.+.+.--|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 4566666666766789999999887653 45677778888887733444433
No 209
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=35.85 E-value=2.2e+02 Score=22.42 Aligned_cols=134 Identities=10% Similarity=0.043 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHCCCCeeecc----------CCcCCC--cHHHHHHHHhcCCC-CCCEEEEeccCCCCCCCCCCCCCH
Q 027845 36 PEPDMIALIHHAINSGITLLDTS----------DIYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta----------~~Yg~g--~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~ 102 (218)
+.++..++.+.+.+.|+..+|-- ..||.. ..-+.+-+.++... .-.+-|+.|+...+. . .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~------~-~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD------D-E 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC------C-c
Confidence 45678888888889999998753 224421 12333444444311 111456666643321 1 1
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCCCC--CHHHHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCCCeeEEccc
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKI--PIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLE 179 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~--~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 179 (218)
+...+ +-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+--++..+ .+++.+.++++....+.+++-
T Consensus 138 ~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 138 EETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred hHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 12222 2233555675 555667643211 1112466677777766666666555 467888888777666666664
Q ss_pred C
Q 027845 180 W 180 (218)
Q Consensus 180 ~ 180 (218)
-
T Consensus 214 r 214 (231)
T cd02801 214 R 214 (231)
T ss_pred H
Confidence 3
No 210
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=35.82 E-value=2.3e+02 Score=22.76 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=55.4
Q ss_pred CCcccCcceecccccCCCCC------------------CCCChHHHHHHHHHHHHCCCCeee-ccCCcCCCcHHHHHHHH
Q 027845 13 QGLEVSAQGLGCMAMSCLYG------------------PPEPEPDMIALIHHAINSGITLLD-TSDIYGPYTNEILVGKA 73 (218)
Q Consensus 13 ~g~~vs~lglG~~~~~~~~~------------------~~~~~~~~~~~l~~A~~~Gi~~~D-ta~~Yg~g~se~~lg~~ 73 (218)
.|+.+|.+-+|-+..=-.|| ...+.+++..+=.+|.++|+.++= +|+.-- .|++ +.
T Consensus 92 ~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTt---deRm--el 166 (268)
T KOG4175|consen 92 QGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTT---DERM--EL 166 (268)
T ss_pred cCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCCh---HHHH--HH
Confidence 46888888887663211122 134667787777888888888774 333332 2222 23
Q ss_pred hcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC
Q 027845 74 LKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (218)
Q Consensus 74 l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg 117 (218)
|......=+|+.+..+.. .+.+.+.+.+...|+|..
T Consensus 167 l~~~adsFiYvVSrmG~T--------G~~~svn~~l~~L~qrvr 202 (268)
T KOG4175|consen 167 LVEAADSFIYVVSRMGVT--------GTRESVNEKLQSLLQRVR 202 (268)
T ss_pred HHHhhcceEEEEEecccc--------ccHHHHHHHHHHHHHHHH
Confidence 333234457888888754 346667777777777664
No 211
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=35.73 E-value=2.5e+02 Score=23.19 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHcC
Q 027845 102 PAYVRACCEASLKRLD 117 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg 117 (218)
|+.+.+-++...++++
T Consensus 177 P~~v~~lv~~l~~~~~ 192 (275)
T cd07937 177 PYAAYELVKALKKEVG 192 (275)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5555555555555544
No 212
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=35.27 E-value=2.5e+02 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=22.8
Q ss_pred hhchHHHHHhcCCCeeeEehhhHH--hhhhhc
Q 027845 188 EAEIVPTCSACRSSKLKIWSIIKS--YLSVLM 217 (218)
Q Consensus 188 ~~~l~~~~~~~g~i~i~~~spl~g--~L~~~~ 217 (218)
.+++.+.|++++ +-+++=..++| ++++.+
T Consensus 213 l~~i~~i~~~~~-~wlHVDaA~gg~~~~~~~~ 243 (373)
T PF00282_consen 213 LEEIADICEKYN-IWLHVDAAYGGSALLSPEY 243 (373)
T ss_dssp HHHHHHHHHHCT--EEEEEETTGGGGGGHCTT
T ss_pred HHHHhhhccccc-eeeeecccccccccccccc
Confidence 358999999999 89999999988 666544
No 213
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=35.25 E-value=80 Score=24.97 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCC-CeeEEcccCCcccccchhchHHHHHhcCCCeeeE
Q 027845 139 IGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVH-PITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 139 ~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~ 205 (218)
++.++.++++--=-.||..+ .+.++.+++++.. .|. ..+...++++++|++++ +.++.
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fi--------vSP~~~~~v~~~~~~~~-i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFI--------VSPGFDPEVIEYAREYG-IPYIP 106 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEE--------EESS--HHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEE--------ECCCCCHHHHHHHHHcC-CcccC
Confidence 34444444332335688887 7888999888773 332 12233369999999999 76653
No 214
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.18 E-value=2.4e+02 Score=22.64 Aligned_cols=84 Identities=10% Similarity=-0.011 Sum_probs=44.2
Q ss_pred HHHHcCCCccceEeeecCCCCCCHH-HHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCCCeeEEcccCCccccc-ch
Q 027845 112 SLKRLDIDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRD-VE 188 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~-~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~ 188 (218)
.++.+|. |.+.+|..+...... --|+.++++++.-.+.-|..-. .+++.+.++++....+.+.+---+.... ..
T Consensus 157 ~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~ 233 (243)
T cd04731 157 EVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTI 233 (243)
T ss_pred HHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCH
Confidence 3455664 566667654321111 0355555666554555554444 4677888887765666666533333322 12
Q ss_pred hchHHHHHhc
Q 027845 189 AEIVPTCSAC 198 (218)
Q Consensus 189 ~~l~~~~~~~ 198 (218)
.++...|++|
T Consensus 234 ~~~~~~~~~~ 243 (243)
T cd04731 234 AELKEYLAER 243 (243)
T ss_pred HHHHHHHhhC
Confidence 3566666653
No 215
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.08 E-value=3.3e+02 Score=24.34 Aligned_cols=122 Identities=13% Similarity=0.148 Sum_probs=63.6
Q ss_pred CChHHHHHHHHHHHHCCCCee-----eccCCcCCCcHHHHHHHHhcC---C-CCCCEEEEeccCCCCCCCCCCCCCHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLL-----DTSDIYGPYTNEILVGKALKG---G-MRERVELATKFGISFADGGKIRGDPAYV 105 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~-----Dta~~Yg~g~se~~lg~~l~~---~-~r~~~~I~tK~~~~~~~~~~~~~~~~~i 105 (218)
.+.++..+-++...+.|++.| |+. .|++.....-+.+.++. . +..++.+.+ .. |..+
T Consensus 178 r~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~-~y~d~~~~~~l~~Ll~~l~~~~~~~rir~~~----~~---------p~~l 243 (445)
T PRK14340 178 HPFASVLDEVRALAEAGYREITLLGQNVN-SYSDPEAGADFAGLLDAVSRAAPEMRIRFTT----SH---------PKDI 243 (445)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeecccc-hhhccCCCchHHHHHHHHhhcCCCcEEEEcc----CC---------hhhc
Confidence 466777777888889998866 433 35421100112233322 1 111222222 22 3344
Q ss_pred HHHHHHHHHHc--CCCccceEeeecC-------CCCCCHHHHHHHHHHHHHh--CCcC----EEecCcccHHHHHHHhcC
Q 027845 106 RACCEASLKRL--DIDCIDLYYQHRV-------DTKIPIEVTIGELKKLVEE--GKIK----YIGLSEACAATIRRAHAV 170 (218)
Q Consensus 106 ~~~~~~sL~~L--g~~~lDl~~lh~~-------d~~~~~~~~~~~l~~l~~~--G~ir----~iGvs~~~~~~l~~~~~~ 170 (218)
...+-+.+++. |..++++=+=|.. ......++..++++.+++. |..- =+|+-+.+.+.+++.++.
T Consensus 244 ~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl~~ 323 (445)
T PRK14340 244 SESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATLSL 323 (445)
T ss_pred CHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHHHH
Confidence 44444445554 4556655333322 2234567788888888887 6532 257777777766665544
No 216
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.04 E-value=3e+02 Score=23.85 Aligned_cols=87 Identities=9% Similarity=-0.044 Sum_probs=54.0
Q ss_pred eEeeecCCC-----------CCCHHHHHHHHHHHHHhC--CcC--EEec--CcccHH---HHHHHhcCCCeeEEcccCCc
Q 027845 123 LYYQHRVDT-----------KIPIEVTIGELKKLVEEG--KIK--YIGL--SEACAA---TIRRAHAVHPITAVQLEWSL 182 (218)
Q Consensus 123 l~~lh~~d~-----------~~~~~~~~~~l~~l~~~G--~ir--~iGv--s~~~~~---~l~~~~~~~~~~~~q~~~n~ 182 (218)
.+.||.|++ ..+++++++++.+..+.. +|. ++=+ -|-+.+ .|.+++...+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 478897743 245789999999865443 221 2222 244444 45555555677899999997
Q ss_pred ccc-----cch---hchHHHHHhcCCCeeeEehhhH
Q 027845 183 WSR-----DVE---AEIVPTCSACRSSKLKIWSIIK 210 (218)
Q Consensus 183 ~~~-----~~~---~~l~~~~~~~g~i~i~~~spl~ 210 (218)
... ... +.+.+..+++| +.+......+
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~g-i~~tvR~s~G 324 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHG-VFTTIRASRG 324 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCC-CcEEEeCCCC
Confidence 433 222 25667788999 8777665554
No 217
>PRK11024 colicin uptake protein TolR; Provisional
Probab=34.75 E-value=1.2e+02 Score=22.29 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs 157 (218)
.+.+.+...++..++. ..+...+=..|...+...+.+.|+.+++.| +..+++.
T Consensus 85 v~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG-~~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAG-VKSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEE
Confidence 3556666666655443 234445556788899999999999999998 4456654
No 218
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=34.59 E-value=1.8e+02 Score=21.30 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCCeeeccCCc
Q 027845 40 MIALIHHAINSGITLLDTSDIY 61 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Y 61 (218)
....+..+++.|+|+||.--.+
T Consensus 30 q~~~i~~qL~~GvR~~dirv~~ 51 (135)
T smart00148 30 SVEGYIQALDHGCRCVELDCWD 51 (135)
T ss_pred cHHHHHHHHHhCCCEEEEEccc
Confidence 3567889999999999866444
No 219
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=34.37 E-value=1.2e+02 Score=21.18 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=38.4
Q ss_pred EEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC---ccceEeeecCCC-CCCHHHHHHHHHHHHH
Q 027845 82 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID---CIDLYYQHRVDT-KIPIEVTIGELKKLVE 147 (218)
Q Consensus 82 ~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~---~lDl~~lh~~d~-~~~~~~~~~~l~~l~~ 147 (218)
+.|+-|++... ..+..+++.++++++..... ..|++++-.+.. ..+.+++.+.|..+.+
T Consensus 46 ~~vsKK~gk~A-------V~RNriKR~lRe~~R~~~~~l~~~~d~v~~~r~~~~~~~~~~l~~~l~~ll~ 108 (111)
T PF00825_consen 46 FSVSKKVGKRA-------VKRNRIKRRLREAFRLNKPELPPGYDIVFIARPGALELSFEELEKELKKLLK 108 (111)
T ss_dssp EEE-STTSS-H-------HHHHHHHHHHHHHHHHCTTTS-SSSEEEEEE-CGGGGS-HHHHHHHHHHHHH
T ss_pred EEecCccccch-------hHHHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCcCcCCHHHHHHHHHHHHH
Confidence 55555555423 45788999999998887543 679988888763 3567777777766654
No 220
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=34.26 E-value=2.8e+02 Score=23.15 Aligned_cols=113 Identities=10% Similarity=0.076 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC-----CCCCCEEEEeccCCCCC----C-CCCCCCCHHHHH
Q 027845 37 EPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG-----GMRERVELATKFGISFA----D-GGKIRGDPAYVR 106 (218)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~-----~~r~~~~I~tK~~~~~~----~-~~~~~~~~~~i~ 106 (218)
-..+.+.|+...+.|+.++=.+++-. .+.+.+.+-|++ .+.++++-++-.....- + ....-.. .
T Consensus 26 ipga~e~l~~L~~~g~~~iflTNn~~--~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG----~ 99 (269)
T COG0647 26 IPGAAEALKRLKAAGKPVIFLTNNST--RSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIG----E 99 (269)
T ss_pred CchHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEEC----C
Confidence 35599999999999999987776655 566666666655 23444444433321110 0 0000001 2
Q ss_pred HHHHHHHHHcCCCccc-------eEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC
Q 027845 107 ACCEASLKRLDIDCID-------LYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 157 (218)
Q Consensus 107 ~~~~~sL~~Lg~~~lD-------l~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs 157 (218)
..+.+.|+.+|....+ -+.+...|....++...+++..+ .+| +++|+..
T Consensus 100 ~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i-~~g-~~fI~tN 155 (269)
T COG0647 100 EGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAI-AAG-APFIATN 155 (269)
T ss_pred cchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHH-HcC-CcEEEeC
Confidence 3466777888854333 35555666667777655555444 445 8888764
No 221
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=34.20 E-value=2.6e+02 Score=22.80 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC---CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 39 DMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG---GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
.+.++++.|.+.|+... ....+....+.+.+-+..+. ..-+.++|.-.+|... |+.+.+-+....++
T Consensus 111 ~~~~~i~~a~~~G~~v~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~---------P~~v~~lv~~l~~~ 180 (259)
T cd07939 111 QLRRLVGRAKDRGLFVS-VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILD---------PFTTYELIRRLRAA 180 (259)
T ss_pred HHHHHHHHHHHCCCeEE-EeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC---------HHHHHHHHHHHHHh
Confidence 35577788888887422 11122222234444443333 3456777877777544 88888888887777
Q ss_pred cCCCccceEeeecCCCC
Q 027845 116 LDIDCIDLYYQHRVDTK 132 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~~ 132 (218)
+++ . +-+|..+..
T Consensus 181 ~~~---~-l~~H~Hn~~ 193 (259)
T cd07939 181 TDL---P-LEFHAHNDL 193 (259)
T ss_pred cCC---e-EEEEecCCC
Confidence 762 2 566766543
No 222
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=33.65 E-value=3.5e+02 Score=24.16 Aligned_cols=122 Identities=15% Similarity=0.086 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHHHC-CCCeeeccCCcCCCcHHHHH---HHHhcCCCC-CCEEEEeccCCCCCCCCCCCCCHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINS-GITLLDTSDIYGPYTNEILV---GKALKGGMR-ERVELATKFGISFADGGKIRGDPAYVRACCE 110 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~Dta~~Yg~g~se~~l---g~~l~~~~r-~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~ 110 (218)
+.++..+++++..+. +++-+=-+-.-.-=.+...+ -+.+++++. +.+-|.|+..... |..+...+-
T Consensus 139 s~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~---------P~RIT~ell 209 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVL---------PQRITDELV 209 (417)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeecccccc---------ccccCHHHH
Confidence 556788888877774 88744322110000222222 233444443 3366888866443 444555555
Q ss_pred HHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEE------ecCcccHHHHHHHhcC
Q 027845 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI------GLSEACAATIRRAHAV 170 (218)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~i------Gvs~~~~~~l~~~~~~ 170 (218)
+.|++.+ .-.+.+|.-.+.+-..++.+|++.|++.|..-.. | .|-+++.+.++...
T Consensus 210 ~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkG-VND~~~~l~~L~~~ 271 (417)
T TIGR03820 210 AILKKHH---PVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAG-VNDCPRIMKKLVHK 271 (417)
T ss_pred HHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECC-cCCCHHHHHHHHHH
Confidence 5666665 3445678765555678899999999999974322 3 35677777776544
No 223
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=33.36 E-value=2.8e+02 Score=22.98 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=63.6
Q ss_pred CCCChHHHHHHHHHHHH--CCCCeeeccCCcCCCcHHHHHHHHhcCCCCC-CEEEEeccCCCCCCCCCCCCCHHHHHHHH
Q 027845 33 PPEPEPDMIALIHHAIN--SGITLLDTSDIYGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAYVRACC 109 (218)
Q Consensus 33 ~~~~~~~~~~~l~~A~~--~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (218)
+..++++..++++.|.+ .|+.-+-..+.|- ....+.|+. ... .+-|+|=++.... ..+.+.-...+
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~P~~v-----~~a~~~L~~-~~~~~vkv~tVigFP~G-----~~~t~~K~~Ea 89 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIYPRFI-----PIARKTLRE-QGTPEIRIATVTNFPHG-----NDDIDIALAET 89 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEECHHHH-----HHHHHHhcc-cCCCCCeEEEEecCCCC-----CCcHHHHHHHH
Confidence 34577889999999999 5887777666553 334444532 112 5778888774431 23344445556
Q ss_pred HHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHH
Q 027845 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE 147 (218)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~ 147 (218)
+..++ .|.+-||++.=-..-...+++.+.+.+.+.++
T Consensus 90 ~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~ 126 (257)
T PRK05283 90 RAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACKE 126 (257)
T ss_pred HHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHH
Confidence 66665 49999999754333233455556666666665
No 224
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=32.97 E-value=2.5e+02 Score=23.56 Aligned_cols=95 Identities=16% Similarity=0.086 Sum_probs=58.3
Q ss_pred HHHcCCCccceEeeecCCCCCCHHHHH-----HHHHHHHHhCCcCEEecCcccHH-------HHHHHhcCCCeeEEcccC
Q 027845 113 LKRLDIDCIDLYYQHRVDTKIPIEVTI-----GELKKLVEEGKIKYIGLSEACAA-------TIRRAHAVHPITAVQLEW 180 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~~~~~~~~~-----~~l~~l~~~G~ir~iGvs~~~~~-------~l~~~~~~~~~~~~q~~~ 180 (218)
++-++-.++|++.+..+.......+.. +.+.++..+--=|++|+.+.++. ++++......+.-+|+.-
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p 134 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHP 134 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecc
Confidence 677788889998888421222222222 56777787777889999886644 455555554555555422
Q ss_pred Ccccc----cchhchHHHHHhcCCCeeeEehh
Q 027845 181 SLWSR----DVEAEIVPTCSACRSSKLKIWSI 208 (218)
Q Consensus 181 n~~~~----~~~~~l~~~~~~~g~i~i~~~sp 208 (218)
-.... .....+++.|+++| +.|..+..
T Consensus 135 ~~~~~~~~~~~~~pi~~~a~~~g-vpv~ihtG 165 (293)
T COG2159 135 VAQGFYPDDPRLYPIYEAAEELG-VPVVIHTG 165 (293)
T ss_pred cccCCCCCChHHHHHHHHHHHcC-CCEEEEeC
Confidence 11111 11246999999999 87776543
No 225
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=32.84 E-value=3.3e+02 Score=23.69 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=60.2
Q ss_pred CCcCCCcHHHHHHHHhcC----CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCC-
Q 027845 59 DIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI- 133 (218)
Q Consensus 59 ~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~- 133 (218)
-.|| .|+.|-+++++ ...+-++|.|-.-+.. --+++..-+++.-++.+ +.++.+|.+....
T Consensus 67 ~V~G---g~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~--------iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~ 132 (406)
T cd01967 67 IVFG---GEKKLKKAIKEAYERFPPKAIFVYSTCPTGL--------IGDDIEAVAKEASKELG---IPVIPVNCEGFRGV 132 (406)
T ss_pred eeeC---cHHHHHHHHHHHHHhCCCCEEEEECCCchhh--------hccCHHHHHHHHHHhhC---CCEEEEeCCCeeCC
Confidence 3455 47777788876 3344466766654322 23334444444334444 7899999885443
Q ss_pred C----HHHHHHHHHHHHH---------hCCcCEEecCcc--cHHHHHHHhcCCCeeEE
Q 027845 134 P----IEVTIGELKKLVE---------EGKIKYIGLSEA--CAATIRRAHAVHPITAV 176 (218)
Q Consensus 134 ~----~~~~~~~l~~l~~---------~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~ 176 (218)
. .+.++++|-+... .+.|--||..++ +.+++.++++...+.++
T Consensus 133 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~ 190 (406)
T cd01967 133 SQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVN 190 (406)
T ss_pred cccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEE
Confidence 2 4456666655432 345667787665 44688888887544443
No 226
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=32.47 E-value=4e+02 Score=24.48 Aligned_cols=22 Identities=5% Similarity=0.030 Sum_probs=14.9
Q ss_pred hchHHHHHhcCCCeeeEehhhHH
Q 027845 189 AEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 189 ~~l~~~~~~~g~i~i~~~spl~g 211 (218)
+++.+.|+++| +-+++=...+|
T Consensus 285 ~eIa~i~~~~g-~~lHVDaA~gg 306 (522)
T TIGR03799 285 DEMADIAQELG-CHFHVDAAWGG 306 (522)
T ss_pred HHHHHHHHHcC-CeEEEEchhhh
Confidence 56777777777 66666666655
No 227
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.41 E-value=3.3e+02 Score=23.49 Aligned_cols=106 Identities=11% Similarity=-0.011 Sum_probs=65.6
Q ss_pred CCCEEEEeccCCCCCC--------CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHH-hC
Q 027845 79 RERVELATKFGISFAD--------GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE-EG 149 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~--------~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~-~G 149 (218)
|..++|+|-+|-.... |.....+++.|.+++......++..-=-++++---++....+.+.++++.+++ .|
T Consensus 100 ~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLln~d~v~~~l~~l~~~~g 179 (342)
T PRK14454 100 GNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLDNYENVMKFLKIVNSPYG 179 (342)
T ss_pred CCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhcCHHHHHHHHHHHhcccc
Confidence 5556677666543311 12346799999999998877665221144556666666777889999999997 57
Q ss_pred C---cCEEecCc--ccHHHHHHHhcCCCeeEEcccCCcccc
Q 027845 150 K---IKYIGLSE--ACAATIRRAHAVHPITAVQLEWSLWSR 185 (218)
Q Consensus 150 ~---ir~iGvs~--~~~~~l~~~~~~~~~~~~q~~~n~~~~ 185 (218)
. -|++-||+ +.+ .+.++.+......+.+..+..+.
T Consensus 180 i~~~~r~itvsTsG~~p-~i~~l~~~~~~~~laisLka~d~ 219 (342)
T PRK14454 180 LNIGQRHITLSTCGIVP-KIYELADENLQITLAISLHAPND 219 (342)
T ss_pred cCcCCCceEEECcCChh-HHHHHHhhcccceEEEecCCCCH
Confidence 5 24666665 444 36666665333334555554443
No 228
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=31.79 E-value=2.9e+02 Score=23.68 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEe--------eecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcC
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYY--------QHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAV 170 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~--------lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~ 170 (218)
++.+.+ ..+-+.|.+.|+++|++-. +..-....+..+.++++.+..+.-++..+-+.+ .+.+.++.+.+.
T Consensus 21 f~~~~~-~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~ 99 (333)
T TIGR03217 21 FTIEQV-RAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDA 99 (333)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHC
Confidence 455544 4455568888888888852 111011112223333333322222222221111 245566666554
Q ss_pred CCeeEEcccCCcccccchhchHHHHHhcCCCee
Q 027845 171 HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKL 203 (218)
Q Consensus 171 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i 203 (218)
.++.+.+..+.-+-....+.++++++.| ..+
T Consensus 100 -gvd~iri~~~~~e~d~~~~~i~~ak~~G-~~v 130 (333)
T TIGR03217 100 -GARTVRVATHCTEADVSEQHIGMARELG-MDT 130 (333)
T ss_pred -CCCEEEEEeccchHHHHHHHHHHHHHcC-CeE
Confidence 2344444443333233347778888887 544
No 229
>PRK10060 RNase II stability modulator; Provisional
Probab=31.62 E-value=4.3e+02 Score=24.85 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=68.4
Q ss_pred CEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCC--CCCHHHHHHHHHHHHHhCCcCEEecCc
Q 027845 81 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT--KIPIEVTIGELKKLVEEGKIKYIGLSE 158 (218)
Q Consensus 81 ~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~--~~~~~~~~~~l~~l~~~G~ir~iGvs~ 158 (218)
.+.|+..+.... .....+...+.+.|++.+.. .+.+.+--.+. ..+.+.+.+.+.+|++.|- .|.+.+
T Consensus 492 ~~~i~vNls~~~-------l~~~~~~~~l~~~l~~~~~~-~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDd 561 (663)
T PRK10060 492 NLRVAVNVSARQ-------LADQTIFTALKQALQELNFE-YCPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDD 561 (663)
T ss_pred CeEEEEEcCHHH-------hCCCcHHHHHHHHHHHHCcC-cceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEEC
Confidence 345555555332 33345777888888888864 34444444332 2456678899999999998 666665
Q ss_pred cc--HHHHHHHhcCCCeeEEcccCCcc--------cccchhchHHHHHhcCCCeeeEe
Q 027845 159 AC--AATIRRAHAVHPITAVQLEWSLW--------SRDVEAEIVPTCSACRSSKLKIW 206 (218)
Q Consensus 159 ~~--~~~l~~~~~~~~~~~~q~~~n~~--------~~~~~~~l~~~~~~~g~i~i~~~ 206 (218)
|. ...+..+ ...+++.+-+.-+.. .+...+.++..|++.| +.+++=
T Consensus 562 fGtg~ssl~~L-~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg-~~viAe 617 (663)
T PRK10060 562 FGTGYSSLSQL-ARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALN-LQVIAE 617 (663)
T ss_pred CCCchhhHHHH-HhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCC-CcEEEe
Confidence 54 2223332 234666666654332 2222346788889888 777664
No 230
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=31.31 E-value=3.8e+02 Score=23.92 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEee-ecCCC----------CC-CHHH----HHHHHHHHHHhCCcCEEecCcccH
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQ-HRVDT----------KI-PIEV----TIGELKKLVEEGKIKYIGLSEACA 161 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~l-h~~d~----------~~-~~~~----~~~~l~~l~~~G~ir~iGvs~~~~ 161 (218)
.+.+.+.+.++..+ +++.+++.++-+ |.|.. .. +.++ ...+.+.|.+.|. ..+++++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 56778888777666 588888888755 22310 01 1222 2345567888887 4589998764
No 231
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.15 E-value=3.1e+02 Score=22.88 Aligned_cols=10 Identities=10% Similarity=0.209 Sum_probs=6.4
Q ss_pred chHHHHHhcC
Q 027845 190 EIVPTCSACR 199 (218)
Q Consensus 190 ~l~~~~~~~g 199 (218)
++.+.|+++|
T Consensus 138 ~~~~~~~~~g 147 (265)
T COG0159 138 ELLKAAEKHG 147 (265)
T ss_pred HHHHHHHHcC
Confidence 5666666666
No 232
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=31.13 E-value=3.3e+02 Score=23.06 Aligned_cols=82 Identities=9% Similarity=-0.006 Sum_probs=56.4
Q ss_pred cceEeeecCCCCCCHHHHHHHHHHHHHhCCc-CEEecCcccHHHHHHHhcCCCeeEEcccCCcccccchhchHHHHHhcC
Q 027845 121 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCSACR 199 (218)
Q Consensus 121 lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 199 (218)
.++.++-.|=+.. -++.+.+|.+.-.+ -..|=|-++...+.++++....+++|+..+..--- .++.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi--~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSP--SRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCH--HHHHHHHHHhC
Confidence 4666666664322 35566667665444 46677778889999998887788888876654322 46788999999
Q ss_pred CCeeeEehhh
Q 027845 200 SSKLKIWSII 209 (218)
Q Consensus 200 ~i~i~~~spl 209 (218)
+.++..+.+
T Consensus 266 -i~~~~~~~~ 274 (320)
T PRK02714 266 -LDAVFSSVF 274 (320)
T ss_pred -CCEEEEech
Confidence 888876555
No 233
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.12 E-value=3e+02 Score=22.70 Aligned_cols=10 Identities=10% Similarity=-0.193 Sum_probs=6.8
Q ss_pred ccceEeeecC
Q 027845 120 CIDLYYQHRV 129 (218)
Q Consensus 120 ~lDl~~lh~~ 129 (218)
-+|++-|.-|
T Consensus 39 Gad~iElGiP 48 (258)
T PRK13111 39 GADIIELGIP 48 (258)
T ss_pred CCCEEEECCC
Confidence 3677777776
No 234
>PRK14865 rnpA ribonuclease P; Provisional
Probab=31.12 E-value=1.5e+02 Score=21.11 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHHcCCC
Q 027845 100 GDPAYVRACCEASLKRLDID 119 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~ 119 (218)
.+.+.+.+++...|++++..
T Consensus 95 ~~~~~l~~~l~~ll~~~~~~ 114 (116)
T PRK14865 95 LDFQQISRELANALERLRKK 114 (116)
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 45566666666666665543
No 235
>PLN00191 enolase
Probab=31.09 E-value=4e+02 Score=24.08 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEe-cC-cccHHHHHHHhcCCCeeEEc
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIG-LS-EACAATIRRAHAVHPITAVQ 177 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iG-vs-~~~~~~l~~~~~~~~~~~~q 177 (218)
.+++.+.+-++..+++ .++.++-.|-+.. -|+.+.+|.+..++.-+| =+ ..++..+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~~----D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQD----DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCcc----cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 4666666666555443 3567777764433 366677777777776666 22 25688999999988888888
Q ss_pred ccCCccccc-chhchHHHHHhcCCCeeeE
Q 027845 178 LEWSLWSRD-VEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 178 ~~~n~~~~~-~~~~l~~~~~~~g~i~i~~ 205 (218)
+..|-.-.- ...++++.|+++| +.++.
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G-~~~~i 393 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAG-WGVMT 393 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCC-CEEEe
Confidence 887754432 2348999999999 88765
No 236
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=31.07 E-value=3.4e+02 Score=23.21 Aligned_cols=119 Identities=12% Similarity=0.052 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHC-CCCeeeccCCcCCC--cHHHHHHHHh---cCCC-CCCEEEEeccCCCCCCCCCCCCCHHHHHHHH
Q 027845 37 EPDMIALIHHAINS-GITLLDTSDIYGPY--TNEILVGKAL---KGGM-RERVELATKFGISFADGGKIRGDPAYVRACC 109 (218)
Q Consensus 37 ~~~~~~~l~~A~~~-Gi~~~Dta~~Yg~g--~se~~lg~~l---~~~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (218)
.++..+++++..+. |++-+--+- |+- .+...+.+.+ ++.+ ...+-|.|+..... +..+...+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~---------P~rit~el 212 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVI---------PQRITDEL 212 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--CccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccC---------chhcCHHH
Confidence 45677777776654 777554331 110 1222232333 3332 24566777764332 45566666
Q ss_pred HHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC-------cccHHHHHHHhcC
Q 027845 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-------EACAATIRRAHAV 170 (218)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~ 170 (218)
-+.|++.|...+ +..|.-.+....+++.++++.|++.|.. +++. |.+++.+.++.+.
T Consensus 213 ~~~L~~~~~~~~--~vsh~nh~~Ei~~~~~~ai~~L~~aGi~--v~~qtvLl~gvnD~~~~l~~L~~~ 276 (331)
T TIGR00238 213 CELLASFELQLM--LVTHINHCNEITEEFAEAMKKLRTVNVT--LLNQSVLLRGVNDRAQILAKLSIA 276 (331)
T ss_pred HHHHHhcCCcEE--EEccCCChHhCCHHHHHHHHHHHHcCCE--EEeecceECCcCCCHHHHHHHHHH
Confidence 677777775433 2333322222346899999999999974 3322 3455655555443
No 237
>PHA02128 hypothetical protein
Probab=31.05 E-value=1.3e+02 Score=21.44 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC------------------C--C-eeEEcccCCcccccchhchHHH
Q 027845 136 EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------------------H--P-ITAVQLEWSLWSRDVEAEIVPT 194 (218)
Q Consensus 136 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~------------------~--~-~~~~q~~~n~~~~~~~~~l~~~ 194 (218)
.+++.-..++..+|-+|-|-....+...+..+... + + +.+-..+|.+..+....++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 35666667778888888777766554444444322 1 1 2344557888888776799999
Q ss_pred HHhcCCCeeeEe
Q 027845 195 CSACRSSKLKIW 206 (218)
Q Consensus 195 ~~~~g~i~i~~~ 206 (218)
+-.|| +.++++
T Consensus 140 agthg-vefvim 150 (151)
T PHA02128 140 AGTHG-VEFVIM 150 (151)
T ss_pred cccCc-eEEEEe
Confidence 99999 887664
No 238
>PLN02591 tryptophan synthase
Probab=30.69 E-value=3e+02 Score=22.57 Aligned_cols=10 Identities=0% Similarity=-0.017 Sum_probs=7.0
Q ss_pred chHHHHHhcC
Q 027845 190 EIVPTCSACR 199 (218)
Q Consensus 190 ~l~~~~~~~g 199 (218)
++.+.|+++|
T Consensus 122 ~~~~~~~~~g 131 (250)
T PLN02591 122 ALRAEAAKNG 131 (250)
T ss_pred HHHHHHHHcC
Confidence 6667777777
No 239
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=30.51 E-value=2.8e+02 Score=23.48 Aligned_cols=144 Identities=15% Similarity=0.018 Sum_probs=69.5
Q ss_pred CCCCcccCc-ceecccccCCCCCCCC--ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEec
Q 027845 11 GSQGLEVSA-QGLGCMAMSCLYGPPE--PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATK 87 (218)
Q Consensus 11 g~~g~~vs~-lglG~~~~~~~~~~~~--~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK 87 (218)
++||...|. ...|.+.-....|... ..+..+++..-|...|+.++-++..+-.-...+.+.++++. + .--+|..+
T Consensus 132 ~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~-~-Gps~I~v~ 209 (299)
T PRK11865 132 MNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV-E-GPAYIQVL 209 (299)
T ss_pred cCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC-C-CCEEEEEE
Confidence 455655553 3455443333223210 01224556667777899999998776533445555565533 2 33344444
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCC--CHHH-----HHHHHHHHHHhCCcCEEecCccc
Q 027845 88 FGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI--PIEV-----TIGELKKLVEEGKIKYIGLSEAC 160 (218)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~--~~~~-----~~~~l~~l~~~G~ir~iGvs~~~ 160 (218)
..-... ...+++.- ++.+.....+.|.-||-+..-.... ...+ -...-+.|+.+|+.+++ +
T Consensus 210 sPC~~~----~~~~~~~~---~~~~klAvetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L-----~ 277 (299)
T PRK11865 210 QPCPTG----WGFPPEKT---IEIGRLAVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHL-----T 277 (299)
T ss_pred CCCCCC----CCCCHHHH---HHHHHHHHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcC-----C
Confidence 321111 22344433 3333344446666666655321110 0000 11222356778888888 4
Q ss_pred HHHHHHHh
Q 027845 161 AATIRRAH 168 (218)
Q Consensus 161 ~~~l~~~~ 168 (218)
+++++++.
T Consensus 278 ~~~~~~~q 285 (299)
T PRK11865 278 EEDIEILQ 285 (299)
T ss_pred HHHHHHHH
Confidence 55555553
No 240
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=30.44 E-value=1.4e+02 Score=23.29 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=40.1
Q ss_pred HHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC-cccHHHHHHHhcCCCeeEEcccCC
Q 027845 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 181 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 181 (218)
.++|.+++-+.+-.......+ .+....|.++... .+..+||- |-+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 367766655543332222222 3444445444433 36778874 678888888888888999999754
No 241
>PRK07945 hypothetical protein; Provisional
Probab=30.16 E-value=3.5e+02 Score=23.15 Aligned_cols=149 Identities=12% Similarity=0.051 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHCCCCeeeccCCcCC-----CcHHHHHHHHhcC------CCCC-CEEEEeccCCCCCCCCCCCCCHHHH
Q 027845 38 PDMIALIHHAINSGITLLDTSDIYGP-----YTNEILVGKALKG------GMRE-RVELATKFGISFADGGKIRGDPAYV 105 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~-----g~se~~lg~~l~~------~~r~-~~~I~tK~~~~~~~~~~~~~~~~~i 105 (218)
....+.++.|++.|+..+=.+++... +.+...+-+.+.. .-++ ++.+..-+...+ +.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~------~g~~~~~ 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILD------DGSLDQE 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccC------CCCcchh
Confidence 34779999999999998866655321 2222222222222 1122 222222222211 1222222
Q ss_pred HHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc---------------ccHHHHHHH-hc
Q 027845 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE---------------ACAATIRRA-HA 169 (218)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~---------------~~~~~l~~~-~~ 169 (218)
++.|+. .||+ +..+|+... .+.++..+.|.+..+.+.+.-+|=-. +..+.+.++ .+
T Consensus 185 ----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e 256 (335)
T PRK07945 185 ----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACRE 256 (335)
T ss_pred ----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHH
Confidence 223333 4554 667887633 33456678888888888877777321 222222222 22
Q ss_pred C-CCeeEEcccCCcccccchhchHHHHHhcCCCeee
Q 027845 170 V-HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLK 204 (218)
Q Consensus 170 ~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~ 204 (218)
. ..+.+|--. +...+...++..|++.| +.+.
T Consensus 257 ~g~~lEINt~~---~r~~P~~~il~~a~e~G-~~vt 288 (335)
T PRK07945 257 HGTAVEINSRP---ERRDPPTRLLRLALDAG-CLFS 288 (335)
T ss_pred hCCEEEEeCCC---CCCCChHHHHHHHHHcC-CeEE
Confidence 2 234444322 22223357889999998 6654
No 242
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=30.15 E-value=4e+02 Score=23.82 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcCE----EecCcccHHHHHHHhcC---CCeeEEcccCCcccccchhchHHHHHhcC
Q 027845 132 KIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCSACR 199 (218)
Q Consensus 132 ~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 199 (218)
....+++.++++.+++.|.--. +|+-+.+.+.+.+.++. ..++.++ ++++.+-+...+.+.+++.|
T Consensus 319 ~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~--~~~l~P~PGT~l~~~~~~~g 391 (472)
T TIGR03471 319 GLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQ--VSLAAPYPGTELYDQAKQNG 391 (472)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee--eeecccCCCcHHHHHHHHCC
Confidence 3456778889999999886533 37777777777766555 3444433 45555555567888888777
No 243
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=30.05 E-value=1.9e+02 Score=25.49 Aligned_cols=68 Identities=13% Similarity=0.007 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCc---CEEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHHHHHhcCCCeeeEe
Q 027845 138 TIGELKKLVEEGKI---KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCSACRSSKLKIW 206 (218)
Q Consensus 138 ~~~~l~~l~~~G~i---r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g~i~i~~~ 206 (218)
-++.+.+|++.-.+ -.-|-+.++...++++++....+++|....-.-- .....+.+.|+.+| +.+...
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~g-i~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARG-QLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcC-Ceeccc
Confidence 36677777776542 2337777889999999998889999998665431 22248999999999 887664
No 244
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=29.93 E-value=1.9e+02 Score=20.04 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=42.1
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEeeecCCCC-CCHHHHHHHHHHHH
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVTIGELKKLV 146 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~~-~~~~~~~~~l~~l~ 146 (218)
+|=-+.|+-|++.. ..+..+++.++++++... ....|++++-.+... .+..++.+.|.+|.
T Consensus 41 ~RlGi~vsKK~g~A--------V~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 41 PRVGLSVSKKVKNA--------VERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred cEEEEEEecccCch--------hHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 34457777776532 457888888888887653 335899998888643 56777877777663
No 245
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=29.88 E-value=4.2e+02 Score=23.98 Aligned_cols=55 Identities=9% Similarity=0.049 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhC-CcCEEec
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGL 156 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G-~ir~iGv 156 (218)
..+++.+.+.++...++.|+.. +.+...+...+.+.+.+-++++++.| .-..|++
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~ 276 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGF---FILADEEPTINRKKFQEFCEEIIARNPISVTWGI 276 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCE---EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 4588999999999888888654 33443333344455666667777776 3334444
No 246
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=29.81 E-value=43 Score=24.72 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=15.3
Q ss_pred HHHHHHHHHCCCCeeeccCCcC
Q 027845 41 IALIHHAINSGITLLDTSDIYG 62 (218)
Q Consensus 41 ~~~l~~A~~~Gi~~~Dta~~Yg 62 (218)
...+...++.|+|+||---.++
T Consensus 29 ~~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp SHHHHHHHHTT--EEEEEEEEE
T ss_pred hHhHHHHHhccCceEEEEEEcC
Confidence 3568999999999999765544
No 247
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=29.56 E-value=2.5e+02 Score=21.15 Aligned_cols=98 Identities=19% Similarity=0.130 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCC-CEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
+.+...++++.+++.|++-+-+.. ..+..+.+. .++ ++-+..+++.... ....+...+.+++. .
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~-----~~~~~~~~~~a~~a-~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTG-----LTTTEVKVAEVEEA-I 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCC-----CCcHHHHHHHHHHH-H
Confidence 667789999999999999876553 333333222 234 5667777764320 01133444444444 4
Q ss_pred HcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh
Q 027845 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~ 148 (218)
++|.+.+.+..-+......+.+++.+.++++.+.
T Consensus 76 ~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 76 DLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 4465444432111111111246677777777765
No 248
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=29.53 E-value=1.9e+02 Score=26.07 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=43.0
Q ss_pred HHHHHhCCcCEEecCcccHHHHHHHhcC-------CC-eeEEcccCCcccccchhchHHHHHhcCCCeeeEeh
Q 027845 143 KKLVEEGKIKYIGLSEACAATIRRAHAV-------HP-ITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 143 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------~~-~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~s 207 (218)
..+-+.|-...+|....+++++++.+.. .+ +-+|-+ .++-++..+..+++.|-+++ +.++..|
T Consensus 37 aAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~-V~~veas 107 (444)
T TIGR02814 37 IAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHG-VRIVEAS 107 (444)
T ss_pred HHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcC-CCEEEec
Confidence 3455779999999989999988776554 24 555554 33323333457889999999 8766554
No 249
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.43 E-value=41 Score=27.03 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=34.9
Q ss_pred HhCCcCEEecCc-ccHHHHHHHhcCCCeeEEcccCCcccccchhchHHHHHhcCCC
Q 027845 147 EEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCSACRSS 201 (218)
Q Consensus 147 ~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i 201 (218)
..-+|.++|.|+ .++.++..+... -.+.-++|++ ...+++++.|+++..+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~--G~iYaVEfs~---R~~reLl~~a~~R~Ni 126 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGE--GRIYAVEFSP---RPMRELLDVAEKRPNI 126 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCC--CcEEEEEecc---hhHHHHHHHHHhCCCc
Confidence 446889999987 778888888763 3345555554 3346899999887533
No 250
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=29.14 E-value=3.9e+02 Score=23.98 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=61.6
Q ss_pred eccCCcCCCcHHHHHHHHhcC----CC-CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH-HcCCCccceEeeecC
Q 027845 56 DTSDIYGPYTNEILVGKALKG----GM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLK-RLDIDCIDLYYQHRV 129 (218)
Q Consensus 56 Dta~~Yg~g~se~~lg~~l~~----~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~-~Lg~~~lDl~~lh~~ 129 (218)
+....|| .|+.|-+++++ .+ .+-++|.|-..+.. ..-+.+.+.+.+++-++ ...--.+.++.++.|
T Consensus 63 E~d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~ei-----IGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tp 134 (454)
T cd01973 63 EDSAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEI-----IGDDIEGVIRKLNEALKEEFPDREVHLIPVHTP 134 (454)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhh-----hccCHHHHHHHHHhhhhhccCCCCCeEEEeeCC
Confidence 3344577 67777788877 32 34467777765322 11233333333332221 111013688999999
Q ss_pred CCCCCH----HHHHHHHHH-HHH----hCCcCEEecCc--ccHHHHHHHhcCCCeeEEcc
Q 027845 130 DTKIPI----EVTIGELKK-LVE----EGKIKYIGLSE--ACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 130 d~~~~~----~~~~~~l~~-l~~----~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~q~ 178 (218)
+..... +.+++++-+ +.. +++|--||-.+ .+.++++++++...+.++.+
T Consensus 135 gF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 135 SFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 876543 233333332 222 35566676333 45578888888876666644
No 251
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.06 E-value=3.6e+02 Score=22.96 Aligned_cols=147 Identities=14% Similarity=0.062 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC-CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHc
Q 027845 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 116 (218)
++..+.+..+.+.|++.|=.-- +.....+.+ +++++ .+ ++-|..=.... .+.+... .+++|
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g--~~~l~lDaN~~--------~~~~~a~-----~~~~l 200 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP--DIPLMADANSA--------YTLADIP-----LLKRL 200 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC--CCeEEEECCCC--------CCHHHHH-----HHHHh
Confidence 5577788888999999885432 211223333 44444 33 33333332211 3344321 23444
Q ss_pred CCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCc-CEEecCcccHHHHHHHhcCCCeeEEcccCCcccc-cchhchHHH
Q 027845 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPT 194 (218)
Q Consensus 117 g~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~ 194 (218)
+..++.++-.|-+. +-++.+.++++.-.+ -+.|=|-++...+..+++....+++|+..+..-- .....+.+.
T Consensus 201 --~~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~ 274 (354)
T cd03317 201 --DEYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDL 274 (354)
T ss_pred --hcCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHH
Confidence 23456666655322 235666777665443 3667777999999999988888999997665432 222488999
Q ss_pred HHhcCCCeeeEehhh
Q 027845 195 CSACRSSKLKIWSII 209 (218)
Q Consensus 195 ~~~~g~i~i~~~spl 209 (218)
|+++| +.++..+.+
T Consensus 275 A~~~g-i~~~~g~~~ 288 (354)
T cd03317 275 CQEHG-IPVWCGGML 288 (354)
T ss_pred HHHcC-CcEEecCcc
Confidence 99999 888765443
No 252
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=28.88 E-value=4.9e+02 Score=24.36 Aligned_cols=113 Identities=9% Similarity=0.011 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHHHHHCCCCeeecc--------CCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHH
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTS--------DIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYV 105 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta--------~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i 105 (218)
..+.++..+++...-+.|+..|+.. ..|-.....+.+.+.-+..+.-.+..-.. +.+. -| ...+..+-+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~R-g~N~-~G-~~~ypddvv 93 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLR-GQNL-LG-YRHYADDVV 93 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEc-cccc-cc-cccCchhhH
Confidence 4566778888888888999998874 22333334555544332234333333222 1110 00 001222334
Q ss_pred HHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEe
Q 027845 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIG 155 (218)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iG 155 (218)
++-++.+++. |++.+-++ . ...+.+.+..+++..++.|..-...
T Consensus 94 ~~~v~~a~~~-Gvd~irif---~--~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 94 ERFVKKAVEN-GMDVFRIF---D--ALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred HHHHHHHHHC-CCCEEEEE---E--ecCcHHHHHHHHHHHHHcCCEEEEE
Confidence 4444544433 54433333 1 1122345566666667777654433
No 253
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=28.83 E-value=2.5e+02 Score=21.08 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCc-CEEecCcccHHHHHHHhcCCCeeEEcc
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (218)
...-.+++.+.+-|+..|-+-+|+=. +..+...+..+....+.+.+.+|.. +.|-+|....-....+-+...+.+.++
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIRAA~~ 87 (148)
T PRK05571 9 HAGFELKEEIIEHLEELGHEVIDLGP-DSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVKGIRAALC 87 (148)
T ss_pred CchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEEE
Confidence 44567999999999999988888642 2233246777888889999999987 788888877766666655555555544
Q ss_pred cCCcccccchhchHHHHHhcCCCeeeEeh
Q 027845 179 EWSLWSRDVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 179 ~~n~~~~~~~~~l~~~~~~~g~i~i~~~s 207 (218)
. + ......+++|+..-|++.+
T Consensus 88 ~------d--~~~A~~ar~hNnaNVL~lG 108 (148)
T PRK05571 88 H------D--TYSAHLAREHNNANVLALG 108 (148)
T ss_pred C------C--HHHHHHHHHhcCCcEEEEC
Confidence 1 1 3556667777766666654
No 254
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.73 E-value=84 Score=24.47 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEcccCCcc
Q 027845 135 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLW 183 (218)
Q Consensus 135 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~ 183 (218)
++.+++.|--.++.||+-++|+-|-....+..+++....+..|--.||.
T Consensus 7 F~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT 55 (193)
T KOG0077|consen 7 FSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 55 (193)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCC
Confidence 4567888888889999999999999999999998886665555555543
No 255
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=28.37 E-value=1.1e+02 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=22.9
Q ss_pred HHHHHHHhcCC----CeeEEcccCCccccc--chhchHHHHHhcCCCee
Q 027845 161 AATIRRAHAVH----PITAVQLEWSLWSRD--VEAEIVPTCSACRSSKL 203 (218)
Q Consensus 161 ~~~l~~~~~~~----~~~~~q~~~n~~~~~--~~~~l~~~~~~~g~i~i 203 (218)
.+.++++++.. =+..+|-+--+.-.. ....+.+.|+++| +-+
T Consensus 174 i~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g-~LL 221 (404)
T COG4992 174 IEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHG-ALL 221 (404)
T ss_pred HHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhC-eEE
Confidence 45555555541 123345444443333 3457888899998 444
No 256
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=28.31 E-value=1.9e+02 Score=20.79 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHh
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 168 (218)
+.+.+.+.+.+++.|+..+.+.-++-.+-..+...+-..+.+.-+++. +.+-.|++++|....
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~-------~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELG-------IPLRFFSAEELNAVE 73 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCT-------SEEEEE-HHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhC-------CCeEEECHHHHhcCC
Confidence 467999999999999999998888888888876655444444443332 445556788888665
No 257
>PRK05588 histidinol-phosphatase; Provisional
Probab=28.29 E-value=3.2e+02 Score=22.08 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHCCCCeeeccCCcCC----C-----cHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHH
Q 027845 39 DMIALIHHAINSGITLLDTSDIYGP----Y-----TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACC 109 (218)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~Dta~~Yg~----g-----~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~ 109 (218)
...+.++.|.+.|+..+ .+++... . .-+..+-+ +++.+.-++.+..-++.. +. -...+
T Consensus 17 ~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~-i~~~~~~~I~~GiE~~~~----------~~-~~~~~ 83 (255)
T PRK05588 17 KIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNK-YSKYRNNKLLLGIELGME----------KD-LIEEN 83 (255)
T ss_pred CHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHH-HHHHhcCCcceEEEeccc----------CC-CHHHH
Confidence 47799999999999988 6655311 0 11122211 111222345444444322 22 34556
Q ss_pred HHHHHHcCCCccceEeeecCCCC----------CCHHH----HHHHHHHHHH-hCCcCEEe
Q 027845 110 EASLKRLDIDCIDLYYQHRVDTK----------IPIEV----TIGELKKLVE-EGKIKYIG 155 (218)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~----------~~~~~----~~~~l~~l~~-~G~ir~iG 155 (218)
++.|++...|++ +..+|+.+.. .+.++ -++.+.++.+ .+.+--+|
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 777777777766 7888985421 12333 3466777666 46554443
No 258
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=28.19 E-value=4.1e+02 Score=23.31 Aligned_cols=84 Identities=8% Similarity=-0.039 Sum_probs=52.4
Q ss_pred ceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC-CCeeEEcccCCccccc-chhchHHHHHhcC
Q 027845 122 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCSACR 199 (218)
Q Consensus 122 Dl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~g 199 (218)
|-+++..|.+ ..++..++.+.+.+.++.+-+...+.+.++++++. .+..++..+-|+.-+- ..+++.+.|+++|
T Consensus 100 D~Vvv~~p~Y----~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDAY----GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCCc----hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 5555544432 23444555554555566666655678888887743 4566666677775543 3358999999999
Q ss_pred CCeeeEehhhH
Q 027845 200 SSKLKIWSIIK 210 (218)
Q Consensus 200 ~i~i~~~spl~ 210 (218)
+-++.=..++
T Consensus 176 -i~vIvD~a~a 185 (405)
T PRK08776 176 -ALTVVDNTFL 185 (405)
T ss_pred -CEEEEECCCc
Confidence 7777665553
No 259
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=28.17 E-value=97 Score=26.04 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHcCCCccc--e-EeeecCCCCCCHHHHHHHHHHHHHhCCcCE
Q 027845 102 PAYVRACCEASLKRLDIDCID--L-YYQHRVDTKIPIEVTIGELKKLVEEGKIKY 153 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lD--l-~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~ 153 (218)
.+...+.+.+.+++||+. .| . +.=+.+ ...+.+++.+++|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~-~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGIS-YDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCcc-ccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 466788899999999985 33 2 222221 234578999999999999854
No 260
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=28.16 E-value=4.8e+02 Score=24.04 Aligned_cols=81 Identities=10% Similarity=0.008 Sum_probs=50.4
Q ss_pred HHHHHHHHHHCCCCeeeccCCcCCC--cHHHHHHHHhcC---CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 40 MIALIHHAINSGITLLDTSDIYGPY--TNEILVGKALKG---GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg~g--~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
+.+.++.|.+.|....-.+..+.++ .....+-+.++. ..-+.+.|.--+|.. .|..+.+.++...+
T Consensus 124 ~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~---------~P~~v~~li~~l~~ 194 (526)
T TIGR00977 124 IYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCDTNGGT---------LPHEISEITTKVKR 194 (526)
T ss_pred HHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEecCCCCc---------CHHHHHHHHHHHHH
Confidence 4566888888998743222211111 233444444433 457788898887754 48899999998888
Q ss_pred HcCCCccceEeeecCCCC
Q 027845 115 RLDIDCIDLYYQHRVDTK 132 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~ 132 (218)
++.. ..+-+|..++.
T Consensus 195 ~~~~---~~i~vH~HND~ 209 (526)
T TIGR00977 195 SLKQ---PQLGIHAHNDS 209 (526)
T ss_pred hCCC---CEEEEEECCCC
Confidence 8762 23777877553
No 261
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=28.14 E-value=3.9e+02 Score=22.94 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeee
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQH 127 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh 127 (218)
+.+.+++.++..+ +++.+++.++.+.
T Consensus 163 t~~~~~~~l~~~~-~l~~~~is~y~L~ 188 (350)
T PRK08446 163 NKKLLKEELKLAK-ELPINHLSAYSLT 188 (350)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeccce
Confidence 3444544444332 3555555555443
No 262
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=27.85 E-value=2.2e+02 Score=19.93 Aligned_cols=81 Identities=19% Similarity=0.112 Sum_probs=54.4
Q ss_pred ecccccCCCCCCCCChHHHHHHHHHHHHCCCC-eeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCC
Q 027845 22 LGCMAMSCLYGPPEPEPDMIALIHHAINSGIT-LLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRG 100 (218)
Q Consensus 22 lG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~-~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~ 100 (218)
+||.++ =+..++++..+-+++++..|.+ -++-++. + ..|...+-+=|+.... ..
T Consensus 3 ~~t~sy----lp~lt~~~i~~QI~yll~qG~~~~lE~ad~-~--------------~~~~~yW~mwklP~f~------~~ 57 (99)
T cd03527 3 FETFSY----LPPLTDEQIAKQIDYIISNGWAPCLEFTEP-E--------------HYDNRYWTMWKLPMFG------CT 57 (99)
T ss_pred cccccc----CCCCCHHHHHHHHHHHHhCCCEEEEEcccC-C--------------CCCCCEEeeccCCCCC------CC
Confidence 455554 2345677789999999999986 3443321 0 1456666665655432 36
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeee
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQH 127 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh 127 (218)
+++.+...|+++++.-.-+||-|+=+.
T Consensus 58 d~~~Vl~ei~~C~~~~p~~YVRliG~D 84 (99)
T cd03527 58 DPAQVLREIEACRKAYPDHYVRVVGFD 84 (99)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 799999999999999888887765443
No 263
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=27.75 E-value=4.6e+02 Score=23.81 Aligned_cols=164 Identities=12% Similarity=0.128 Sum_probs=91.1
Q ss_pred ChHHHHHHHHHHHHC-CCCeeeccCCcCCCc--HHHHHHHHhcC----CCCCCEEEEeccCCCCC--C-----C------
Q 027845 36 PEPDMIALIHHAINS-GITLLDTSDIYGPYT--NEILVGKALKG----GMRERVELATKFGISFA--D-----G------ 95 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~Dta~~Yg~g~--se~~lg~~l~~----~~r~~~~I~tK~~~~~~--~-----~------ 95 (218)
+.+...++++.+++. +++.=|....+.... .-..+.++.+. ...+.+++.+-+..... . +
T Consensus 29 ~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n~ 108 (469)
T PRK09613 29 DKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSNK 108 (469)
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCCC
Confidence 555578888888874 666666665554211 11223333322 12334444333221110 0 0
Q ss_pred --CCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHH----hCCcCEEecC--cccHHHHHHH
Q 027845 96 --GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE----EGKIKYIGLS--EACAATIRRA 167 (218)
Q Consensus 96 --~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~----~G~ir~iGvs--~~~~~~l~~~ 167 (218)
.....+.+.|.+.++. ++++|...+-|+.=..| +..+++-+.+.++.+++ .|.++.++++ ..+.++++++
T Consensus 109 ~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~L 186 (469)
T PRK09613 109 EIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKL 186 (469)
T ss_pred CCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHH
Confidence 1123578889888875 47799877666422222 34567767777777775 5677766664 3678888888
Q ss_pred hcCC--CeeEEcccCC--------cccc--cch--hchHHHHHhcCCCe
Q 027845 168 HAVH--PITAVQLEWS--------LWSR--DVE--AEIVPTCSACRSSK 202 (218)
Q Consensus 168 ~~~~--~~~~~q~~~n--------~~~~--~~~--~~l~~~~~~~g~i~ 202 (218)
.+.. ...++|--|| +.-+ ..+ -..++.+++.| +.
T Consensus 187 keaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aG-i~ 234 (469)
T PRK09613 187 KEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAG-ID 234 (469)
T ss_pred HHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcC-CC
Confidence 7663 4556666554 2111 111 15677788888 54
No 264
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=27.61 E-value=1.4e+02 Score=27.65 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCC---CCCHHHHHHHHHHHHHhCCcCEE
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDT---KIPIEVTIGELKKLVEEGKIKYI 154 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~---~~~~~~~~~~l~~l~~~G~ir~i 154 (218)
+...+-++..++...-.+.+ -|-.-- ...+.++++-|-+++++|+||.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv 411 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGV 411 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceE
Confidence 56677788888888766666 111100 11234567788899999999987
No 265
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=27.61 E-value=5.2e+02 Score=24.26 Aligned_cols=106 Identities=12% Similarity=0.013 Sum_probs=56.9
Q ss_pred CCCCChHHHHHHHHHHHHCCCCeeecc--------CCcCCCcHHHHHHHHhcC-CCCCCEEEEec----cCCCCCCCCCC
Q 027845 32 GPPEPEPDMIALIHHAINSGITLLDTS--------DIYGPYTNEILVGKALKG-GMRERVELATK----FGISFADGGKI 98 (218)
Q Consensus 32 ~~~~~~~~~~~~l~~A~~~Gi~~~Dta--------~~Yg~g~se~~lg~~l~~-~~r~~~~I~tK----~~~~~~~~~~~ 98 (218)
+.+.+.++..++....-+.|+..++.- --|......+.+ +.+++ .++-.+..... +++.
T Consensus 21 ~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~l-r~l~~~~~~~~lqml~Rg~n~vg~~------- 92 (593)
T PRK14040 21 ATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERL-RELKKAMPNTPQQMLLRGQNLLGYR------- 92 (593)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHH-HHHHHhCCCCeEEEEecCcceeccc-------
Confidence 334566778888887778899888872 223322334444 33433 45544444333 2221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCc
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 151 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~i 151 (218)
.-++++.+..-+...+.|++.+.++ |...+++.+..+++..++.|..
T Consensus 93 -~ypddvv~~~v~~a~~~Gid~~rif-----d~lnd~~~~~~ai~~ak~~G~~ 139 (593)
T PRK14040 93 -HYADDVVERFVERAVKNGMDVFRVF-----DAMNDPRNLETALKAVRKVGAH 139 (593)
T ss_pred -cCcHHHHHHHHHHHHhcCCCEEEEe-----eeCCcHHHHHHHHHHHHHcCCe
Confidence 1234433333333344555554444 3334456677788888888885
No 266
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.60 E-value=2.1e+02 Score=22.85 Aligned_cols=59 Identities=24% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCcC---EEecCc-ccHHHHHHHhcC-CCeeEEcccCCcccccchhchHHHHHhcCCCeee
Q 027845 137 VTIGELKKLVEEGKIK---YIGLSE-ACAATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLK 204 (218)
Q Consensus 137 ~~~~~l~~l~~~G~ir---~iGvs~-~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~ 204 (218)
+.++.+++++++-.-+ .||..+ .++++.+++++. ..| +..+...++++++|+++| +.++
T Consensus 50 ~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F--------ivsP~~~~~v~~~~~~~~-i~~i 113 (213)
T PRK06552 50 FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF--------IVSPSFNRETAKICNLYQ-IPYL 113 (213)
T ss_pred cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE--------EECCCCCHHHHHHHHHcC-CCEE
No 267
>PLN02522 ATP citrate (pro-S)-lyase
Probab=27.50 E-value=1.6e+02 Score=27.71 Aligned_cols=29 Identities=24% Similarity=0.111 Sum_probs=22.8
Q ss_pred CcHHHHHHHHhcCCCCCCEEEEeccCCCC
Q 027845 64 YTNEILVGKALKGGMRERVELATKFGISF 92 (218)
Q Consensus 64 g~se~~lg~~l~~~~r~~~~I~tK~~~~~ 92 (218)
+..|+.+.+++++..+++-+|.-|.|...
T Consensus 234 g~~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 234 GRDEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 46788888888875578889999988655
No 268
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=27.50 E-value=2.2e+02 Score=20.23 Aligned_cols=72 Identities=13% Similarity=-0.016 Sum_probs=45.8
Q ss_pred cccCcceecccccCCCCCCCCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCC
Q 027845 15 LEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFAD 94 (218)
Q Consensus 15 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~ 94 (218)
..-+++|+-...= ..|.++....+++.+++++..=. .. .+.-+++|..|-+...
T Consensus 42 ~~~~R~G~~VsKK--~~g~AV~RNriKR~lRe~~R~~~-------------------~~---l~~~diVviar~~~~~-- 95 (114)
T PRK01732 42 LGHPRLGLTVAKK--NVKRAHERNRIKRLTRESFRLHQ-------------------HE---LPAMDFVVIAKKGVAD-- 95 (114)
T ss_pred CCCcEEEEEEEcc--cCcchhHHHHHHHHHHHHHHHhh-------------------hc---CCCCeEEEEeCCCccc--
Confidence 3345555544321 02345666678888888877410 00 2345788888866543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC
Q 027845 95 GGKIRGDPAYVRACCEASLKRLD 117 (218)
Q Consensus 95 ~~~~~~~~~~i~~~~~~sL~~Lg 117 (218)
.+.+.+.+++...|++++
T Consensus 96 -----~~~~~l~~~l~~ll~k~~ 113 (114)
T PRK01732 96 -----LDNRELFELLEKLWRRHS 113 (114)
T ss_pred -----CCHHHHHHHHHHHHHHhh
Confidence 778999999999998875
No 269
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=27.44 E-value=3.5e+02 Score=26.56 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh--CCcCEEecCcccHHHHHHHhcCCCeeEEcc
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (218)
.-+.+++-.++....--....-+|+|+..+... .+.+++|.+..++ ..+..|-+++... .| +....--|..+
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--~~a~NaLLK~LEEpP~~~~fIl~tt~~~-kL---l~TIrSRc~~v 174 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAHMVT--PQGFNALLKIVEEPPEHLKFIFATTEPD-KV---IGTIRSRTHHY 174 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechhhcC--HHHHHHHHHHHhCCCCCeEEEEEeCChh-hh---hHHHHhheeEE
Confidence 455666543433322223456789998876543 4678888888887 8889998886433 22 22222236677
Q ss_pred cCCcccccc-hhchHHHHHhcCCCe
Q 027845 179 EWSLWSRDV-EAEIVPTCSACRSSK 202 (218)
Q Consensus 179 ~~n~~~~~~-~~~l~~~~~~~g~i~ 202 (218)
+|..+.... ..-+...|++.| +.
T Consensus 175 ~F~~l~~~~l~~~L~~il~~EG-v~ 198 (824)
T PRK07764 175 PFRLVPPEVMRGYLERICAQEG-VP 198 (824)
T ss_pred EeeCCCHHHHHHHHHHHHHHcC-CC
Confidence 777776542 224556676677 54
No 270
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=27.27 E-value=1.4e+02 Score=21.20 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCccceEeeecCCCCC-CHHHHHHHHHHHHHhCCcCEEecC
Q 027845 106 RACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLS 157 (218)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~-~~~~~~~~l~~l~~~G~ir~iGvs 157 (218)
+..+++.|+.+.....|.+++..++... +..+....++.|.+.| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 4556666666655678999999988764 4557777777787765 4544443
No 271
>PLN02494 adenosylhomocysteinase
Probab=27.09 E-value=81 Score=28.60 Aligned_cols=87 Identities=8% Similarity=-0.058 Sum_probs=53.0
Q ss_pred HHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHH-hCCc--CEEecCcccHH---HHHHHhcCCCeeEEcccCCcccc
Q 027845 112 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE-EGKI--KYIGLSEACAA---TIRRAHAVHPITAVQLEWSLWSR 185 (218)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~-~G~i--r~iGvs~~~~~---~l~~~~~~~~~~~~q~~~n~~~~ 185 (218)
+|...|...|+...-|-| .+.++.+-.+ +.-. ..|+.|-|-.. .|.+.+....-.|.-..+||+.+
T Consensus 12 ~la~~G~~~i~wa~~~mp--------~l~~~~~~~~~~~pl~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~Np~sT 83 (477)
T PLN02494 12 SQADFGRLEIELAEVEMP--------GLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFST 83 (477)
T ss_pred hhhHHHHHHHHHHHHhCH--------HHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCCCccc
Confidence 344455555554444443 3444443332 2222 26777765332 33333344556778889999999
Q ss_pred cchhchHHHHHhcCCCeeeEehhh
Q 027845 186 DVEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 186 ~~~~~l~~~~~~~g~i~i~~~spl 209 (218)
+ +++.+.+.+.| +.+++|..-
T Consensus 84 q--d~vaaal~~~g-i~vfa~~g~ 104 (477)
T PLN02494 84 Q--DHAAAAIARDS-AAVFAWKGE 104 (477)
T ss_pred h--HHHHHHHHhCC-ceEEEecCC
Confidence 8 68888888999 999999754
No 272
>PRK10997 yieM hypothetical protein; Provisional
Probab=27.06 E-value=1.9e+02 Score=26.33 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCC---ccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecC--cccHHHHHHHhcC
Q 027845 103 AYVRACCEASLKRLDID---CIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS--EACAATIRRAHAV 170 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~---~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs--~~~~~~l~~~~~~ 170 (218)
..+..+++..++.++.. .-|+++|-........+++.+.+..+++++..|..|++ ++....+.++.+.
T Consensus 397 TDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~ifD~ 469 (487)
T PRK10997 397 TDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIFDH 469 (487)
T ss_pred CcHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhcCe
Confidence 34677777777777632 47888888775444467899999999998777776654 4455555666544
No 273
>PRK10551 phage resistance protein; Provisional
Probab=27.04 E-value=3e+02 Score=25.16 Aligned_cols=114 Identities=9% Similarity=0.037 Sum_probs=62.6
Q ss_pred CEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC-CCHHHHHHHHHHHHHhCCcCEEecCcc
Q 027845 81 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEA 159 (218)
Q Consensus 81 ~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~ 159 (218)
...++-.+.... .....+...+.+.++.++....- +.+.-.+.. .+..+..+.++.|++.|- .|.+.+|
T Consensus 349 ~~~lsINis~~~-------l~~~~f~~~l~~~l~~~~~~~~~-LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDF 418 (518)
T PRK10551 349 GAKLGINISPAH-------LHSDSFKADVQRLLASLPADHFQ-IVLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDF 418 (518)
T ss_pred CcEEEEEeCHHH-------HCCchHHHHHHHHHHhCCCCcce-EEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECC
Confidence 455555655433 33455777888888888875432 222222211 122456688899999999 5555554
Q ss_pred cHH--HHHHHhcCCCeeEEcccCCcccc--------cchhchHHHHHhcCCCeeeEe
Q 027845 160 CAA--TIRRAHAVHPITAVQLEWSLWSR--------DVEAEIVPTCSACRSSKLKIW 206 (218)
Q Consensus 160 ~~~--~l~~~~~~~~~~~~q~~~n~~~~--------~~~~~l~~~~~~~g~i~i~~~ 206 (218)
+.. .+.. +...+++.+-+.-+.... ...+.+++.|++.| +.+++=
T Consensus 419 Gtg~ssl~~-L~~l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lg-i~vVAE 473 (518)
T PRK10551 419 GTGHSALIY-LERFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLN-MLTVAE 473 (518)
T ss_pred CCCchhHHH-HHhCCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCC-CEEEEE
Confidence 321 2222 222355555554332221 12246788888888 777654
No 274
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=26.94 E-value=2e+02 Score=24.02 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCccceEeeecCCCCCCH---HHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC
Q 027845 105 VRACCEASLKRLDIDCIDLYYQHRVDTKIPI---EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 105 i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~---~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 170 (218)
.++.+.-.+.-++ ..+++++..|....|. .++++.|.++.++|. +.|=+|+|..+.++.+.+.
T Consensus 141 ~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 141 MKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCDR 206 (293)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCCE
Confidence 4555555555554 4789999998776665 478999999999996 6888999999999887553
No 275
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=26.92 E-value=2.1e+02 Score=21.40 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHH--hCCcCEEecCcccHHHHHHHhcCCCeeE
Q 027845 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPITA 175 (218)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 175 (218)
...+.+.+.+.+++..+.+|++ ++++|-.. --++++++.+..+ +|.|-.=|--+++.-.++.++.....-+
T Consensus 22 G~~tl~~i~~~l~~~a~~~g~~-v~~~QSN~------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~ 94 (140)
T cd00466 22 GTTTLADIEALLRELAAELGVE-VEFFQSNH------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPV 94 (140)
T ss_pred CcCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCE
Confidence 4567899999999999999974 66655332 1257777777654 4666666777777778888888866667
Q ss_pred EcccCCccccc
Q 027845 176 VQLEWSLWSRD 186 (218)
Q Consensus 176 ~q~~~n~~~~~ 186 (218)
+.+..+-...+
T Consensus 95 VEVHiSNi~aR 105 (140)
T cd00466 95 IEVHISNIHAR 105 (140)
T ss_pred EEEecCCcccc
Confidence 77776655443
No 276
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=26.88 E-value=3.1e+02 Score=22.30 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCC--------------------------ccceEeeecCCCCCCH---HHHHHHHHHHHHhC
Q 027845 99 RGDPAYVRACCEASLKRLDID--------------------------CIDLYYQHRVDTKIPI---EVTIGELKKLVEEG 149 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~--------------------------~lDl~~lh~~d~~~~~---~~~~~~l~~l~~~G 149 (218)
+.+...+++.+++.-++|+.. .++++.+..|-...++ ..+.+.+.+++++|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 455666677777776766632 2344455544444443 35778888999999
Q ss_pred CcCEEecCcccHHHHHHHhcC
Q 027845 150 KIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 150 ~ir~iGvs~~~~~~l~~~~~~ 170 (218)
+ .+=+|+|..++++++-+.
T Consensus 184 r--~viFSSH~m~EvealCDr 202 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred c--EEEEecccHHHHHHhhhe
Confidence 8 788999999999988665
No 277
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.85 E-value=3.6e+02 Score=22.16 Aligned_cols=119 Identities=13% Similarity=0.043 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHHCCCCee-e-ccCCcCCC-cHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLL-D-TSDIYGPY-TNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~-D-ta~~Yg~g-~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (218)
+.++..+.++.+.+.|++.| - ++..+... ..++.+.+..+...+-.+.+....+ . .+++ .-+.
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g--~-------~~~e-----~l~~ 128 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLG--L-------LDPE-----QAKR 128 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCC--C-------CCHH-----HHHH
Confidence 45566666777778898754 2 22222211 1234444433222222333322222 1 2333 3345
Q ss_pred HHHcCCCccceEeeecC------CCCCCHHHHHHHHHHHHHhCCcC----EEecCcccHHHHHHHhc
Q 027845 113 LKRLDIDCIDLYYQHRV------DTKIPIEVTIGELKKLVEEGKIK----YIGLSEACAATIRRAHA 169 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh~~------d~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~l~~~~~ 169 (218)
|++.|++.+-+-+=..+ ....++++.+++++.+++.|.-- -+|+ +.+.+.+.+.+.
T Consensus 129 Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~ 194 (296)
T TIGR00433 129 LKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLAL 194 (296)
T ss_pred HHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHH
Confidence 66777766433211111 12346788899999999998632 2576 556665555443
No 278
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=26.84 E-value=2.9e+02 Score=25.57 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCC
Q 027845 131 TKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHP 172 (218)
Q Consensus 131 ~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 172 (218)
...+.+++.+.+.+.++..+|+.+|+-.+...++.++++...
T Consensus 408 ~~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g 449 (546)
T COG4626 408 DLIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAG 449 (546)
T ss_pred CccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCC
Confidence 345678899999999999999999999999999999888743
No 279
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=26.72 E-value=4e+02 Score=22.67 Aligned_cols=133 Identities=11% Similarity=0.099 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHCCCCeee----------ccCCcCCC--cHHHHHHHHhcCCC-CCCEEEEeccCCCCCCCCCCCCCH
Q 027845 36 PEPDMIALIHHAINSGITLLD----------TSDIYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~D----------ta~~Yg~g--~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~ 102 (218)
+.++..++.+.+.+.|+..|| +...||.. ..-+.+.+.++... .-++-|+.|+-..+.+ ..+.
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~----~~~~ 140 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP----LDSY 140 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC----cchH
Confidence 667777888888888999999 44444432 22233444444411 1235688887543311 0122
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCC-CCCH---------HHHHHHHHHHHHhC-CcCEEecCc-ccHHHHHHHhcC
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDT-KIPI---------EVTIGELKKLVEEG-KIKYIGLSE-ACAATIRRAHAV 170 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-~~~~---------~~~~~~l~~l~~~G-~ir~iGvs~-~~~~~l~~~~~~ 170 (218)
+.. ..+-+.++..| +|.+.+|.-.. .... .--|+...++++.- .|--||.-+ ++.+...+.+.
T Consensus 141 ~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~- 215 (318)
T TIGR00742 141 EFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS- 215 (318)
T ss_pred HHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-
Confidence 222 23334555666 67788896532 0000 01477777787765 577777665 67777777764
Q ss_pred CCeeEEcc
Q 027845 171 HPITAVQL 178 (218)
Q Consensus 171 ~~~~~~q~ 178 (218)
..+.+|+
T Consensus 216 -g~dgVMi 222 (318)
T TIGR00742 216 -HVDGVMV 222 (318)
T ss_pred -CCCEEEE
Confidence 2444444
No 280
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=26.67 E-value=1.3e+02 Score=23.05 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCcc----ceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC
Q 027845 105 VRACCEASLKRLDIDCI----DLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 105 i~~~~~~sL~~Lg~~~l----Dl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 170 (218)
.+..++..++.+|.+.- +.+.-.+ .......++.+.|++|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 35566777777776511 1111111 11233457888899999988 44555777777766666554
No 281
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=26.62 E-value=1.6e+02 Score=26.91 Aligned_cols=128 Identities=12% Similarity=0.026 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCC-CCCHHHHHHHHHH
Q 027845 66 NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-KIPIEVTIGELKK 144 (218)
Q Consensus 66 se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-~~~~~~~~~~l~~ 144 (218)
.-+-+|.+|++ +.+++|+-.+.... .....+..-+.+.+++-++.- .=+-+.--+. ..+.......+..
T Consensus 340 ~~~dlG~~L~~--~~~l~VsINl~a~D-------l~s~rli~~~~~~l~~~~v~p-qQI~lElTER~f~D~~~~~~iI~r 409 (524)
T COG4943 340 VFRDLGDLLRQ--HRDLHVSINLSASD-------LASPRLIDRLNRKLAQYQVRP-QQIALELTERTFADPKKMTPIILR 409 (524)
T ss_pred HHHHhHHHHHh--CcceEEEEeeeehh-------hcCchHHHHHHHHHHhcCcCh-HHheeehhhhhhcCchhhhHHHHH
Confidence 34446777765 66688887776543 445567777777777776531 1111111111 1344557788899
Q ss_pred HHHhCCcCEE-----ecCcccHHHHHHH----hcCCCeeEEcccCCcccccchhchHHHHHhcCCCeeeEe
Q 027845 145 LVEEGKIKYI-----GLSEACAATIRRA----HAVHPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIW 206 (218)
Q Consensus 145 l~~~G~ir~i-----Gvs~~~~~~l~~~----~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~ 206 (218)
+++.|.--+| |-|| ...|..+ ++..+-=+--+.++.......+.+++.++++| +.+++=
T Consensus 410 ~ReaG~~IyIDDFGTGYSn--L~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~-L~iVaE 477 (524)
T COG4943 410 LREAGHEIYIDDFGTGYSN--LHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLG-LKIVAE 477 (524)
T ss_pred HHhcCCeEEEccCcCcchh--HHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcC-CcEEee
Confidence 9999996655 3333 2222222 11111111122333333344457888888888 777653
No 282
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=26.60 E-value=1e+02 Score=25.90 Aligned_cols=85 Identities=13% Similarity=-0.042 Sum_probs=50.1
Q ss_pred HcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc------ccHHHHHHHhcC--CCeeEEcccCCccccc
Q 027845 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE------ACAATIRRAHAV--HPITAVQLEWSLWSRD 186 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~------~~~~~l~~~~~~--~~~~~~q~~~n~~~~~ 186 (218)
+...+..|+..+..|....= ..+..++.... .|=|+. ++...+.++.+. .|..++-+.||+.+.
T Consensus 158 k~a~E~~~~~IIDsaaG~gC-----pVi~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s- 229 (284)
T COG1149 158 KHAKELADLLIIDSAAGTGC-----PVIASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS- 229 (284)
T ss_pred HhhhhhcceeEEecCCCCCC-----hHHHhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch-
Confidence 33333378888887743321 11112222222 343332 344444455444 567788888855433
Q ss_pred chhchHHHHHhcCCCeeeEehhhHH
Q 027845 187 VEAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 187 ~~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
++.++|++.| +.+++--|+.-
T Consensus 230 ---~ie~~~~e~g-i~il~~IPyd~ 250 (284)
T COG1149 230 ---EIEEYCEEEG-IPILGEIPYDK 250 (284)
T ss_pred ---HHHHHHHHcC-CCeeEECCcch
Confidence 7889999999 99999999865
No 283
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=26.56 E-value=3e+02 Score=21.17 Aligned_cols=96 Identities=9% Similarity=-0.040 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCE-EecCcccHHHHHHHhcCCCeeEEcc
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKY-IGLSEACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~-iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (218)
.++..+.+.++. +.+.|.+++.+-....+-. .......+.++++++...+.- +.+-..++....+.......+.+|+
T Consensus 8 ~~~~~~~~~~~~-~~~~g~d~i~~~~~Dg~~~-~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 8 ADFARLGEEVKA-VEEAGADWIHVDVMDGHFV-PNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEEcCCCCCCC-CCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 345556665553 4577888877753322211 011134555556655433222 5666666665555555566778777
Q ss_pred cCCcccccchhchHHHHHhcC
Q 027845 179 EWSLWSRDVEAEIVPTCSACR 199 (218)
Q Consensus 179 ~~n~~~~~~~~~l~~~~~~~g 199 (218)
+...- ......++.+++.|
T Consensus 86 h~~~~--~~~~~~~~~~~~~g 104 (210)
T TIGR01163 86 HPEAS--EHIHRLLQLIKDLG 104 (210)
T ss_pred ccCCc--hhHHHHHHHHHHcC
Confidence 65432 22246777788777
No 284
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=26.44 E-value=4e+02 Score=22.56 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCCC------cHHHHHHHHhcCCC-CCCEEEEeccCCCCCCCCCCCCCHHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGPY------TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRA 107 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g------~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~ 107 (218)
.+.++..++++.+.+.|+..|--+ | | .-.+++.. +++.+ ..++.|+|-.. .+.+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~-i~~~~~l~~i~itTNG~--------------ll~~ 105 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGS--------------RLAR 105 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHH-HHhCCCCceEEEEeChh--------------HHHH
Confidence 467888999999999999877643 2 2 12222322 22211 22455555421 1222
Q ss_pred HHHHHHHHcCCCccceEeeecCCCC--------CCHHHHHHHHHHHHHhCC--c--CEEecCcccHHHHHHHhcC---CC
Q 027845 108 CCEASLKRLDIDCIDLYYQHRVDTK--------IPIEVTIGELKKLVEEGK--I--KYIGLSEACAATIRRAHAV---HP 172 (218)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~~--------~~~~~~~~~l~~l~~~G~--i--r~iGvs~~~~~~l~~~~~~---~~ 172 (218)
.-+.|...|++++- +.++.+++. ..++.+++.++.+++.|. + ..+.+...+.+++.++++. .+
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 33456667776654 345544321 346789999999999886 2 2333444566666665554 34
Q ss_pred eeEEcccCCcc
Q 027845 173 ITAVQLEWSLW 183 (218)
Q Consensus 173 ~~~~q~~~n~~ 183 (218)
+++.-+++-++
T Consensus 184 i~~~~ie~mP~ 194 (329)
T PRK13361 184 LDIAFIEEMPL 194 (329)
T ss_pred CeEEEEecccC
Confidence 44444444443
No 285
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=26.43 E-value=4.5e+02 Score=23.19 Aligned_cols=96 Identities=8% Similarity=-0.012 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhC--CcCEEe-cC-cccHHHHHHHhcCCCeeE
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIG-LS-EACAATIRRAHAVHPITA 175 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G--~ir~iG-vs-~~~~~~l~~~~~~~~~~~ 175 (218)
.+++...+-+...++.+ ++.++-.|-+..+ |+.+.+|.+.- .+.-.| =+ .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 45555555555554443 4777777755444 45555565552 343323 21 257999999999888888
Q ss_pred EcccCCccccc-chhchHHHHHhcCCCeeeE
Q 027845 176 VQLEWSLWSRD-VEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 176 ~q~~~n~~~~~-~~~~l~~~~~~~g~i~i~~ 205 (218)
+|+..|-.-.- ...++.+.|+++| +.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G-~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNG-YGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcC-CeEEc
Confidence 99887754332 2248899999999 87744
No 286
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=26.20 E-value=3.7e+02 Score=22.13 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC--CCeeEEcc
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQL 178 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~ 178 (218)
+.+.+.+..++. ..-|.+.||+-.= +......+.+...++.+++.-. .-|.+-+++++.++.+++. ..+-+|-+
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 344444444443 3568889998532 1112224445566666655422 2478888999999999887 44444433
Q ss_pred cCCcccccchhchHHHHHhcCCCeeeE
Q 027845 179 EWSLWSRDVEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 179 ~~n~~~~~~~~~l~~~~~~~g~i~i~~ 205 (218)
. ..... .+.+++.++++| +.+++
T Consensus 99 s--~~~~~-~~~~~~l~~~~g-~~vv~ 121 (261)
T PRK07535 99 S--AEGEK-LEVVLPLVKKYN-APVVA 121 (261)
T ss_pred C--CCCcc-CHHHHHHHHHhC-CCEEE
Confidence 3 21111 247888888888 66654
No 287
>PRK02399 hypothetical protein; Provisional
Probab=26.05 E-value=2.3e+02 Score=25.15 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEE--------------ecCcccHHHHHHHhcC
Q 027845 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI--------------GLSEACAATIRRAHAV 170 (218)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~i--------------Gvs~~~~~~l~~~~~~ 170 (218)
.+++...++|.-...|++.+|.-..- =++||+|.++|.+..+ |+-+..++.+..+.+.
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G------GraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~ 270 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG------GRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAART 270 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc------hHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHc
Confidence 44555555555444799999975432 2589999999999875 6777788899888776
No 288
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=25.99 E-value=1.9e+02 Score=20.70 Aligned_cols=53 Identities=30% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 152 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir 152 (218)
.+...+.+.++..++.-..+.+-=-.+-.|+...--++..+.|.+|+++||+.
T Consensus 53 ~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 53 RDRSSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEGKIE 105 (110)
T ss_pred EecccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcCCCc
Confidence 44667788888888776655442123334555555678999999999999985
No 289
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.99 E-value=2.2e+02 Score=23.37 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHH-HHHhCCcCEEecC-------cccHHHHHHHhcCCCeeEEc
Q 027845 106 RACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKK-LVEEGKIKYIGLS-------EACAATIRRAHAVHPITAVQ 177 (218)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~-l~~~G~ir~iGvs-------~~~~~~l~~~~~~~~~~~~q 177 (218)
...++..|+-.| +|||++-+-|-......+++++..-+ +++-|.--+.|=. .-..+++.+..+...|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 456777788888 69999999997655555555544444 4444444455522 12233333444446677777
Q ss_pred ccCCcccccch--hchHHHHHhcC
Q 027845 178 LEWSLWSRDVE--AEIVPTCSACR 199 (218)
Q Consensus 178 ~~~n~~~~~~~--~~l~~~~~~~g 199 (218)
+.=.-+.-..+ ..+++.+++.|
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~G 126 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEG 126 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTT
T ss_pred ecCCceeCCHHHHHHHHHHHHHCC
Confidence 75554443322 26777777776
No 290
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=25.94 E-value=2.4e+02 Score=19.85 Aligned_cols=90 Identities=11% Similarity=0.058 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc-----ccHHHHHHHhcCCCeeEEccc
Q 027845 105 VRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-----ACAATIRRAHAVHPITAVQLE 179 (218)
Q Consensus 105 i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~-----~~~~~l~~~~~~~~~~~~q~~ 179 (218)
+-.++-+++++||. ..+.++..++.... .....-..-.++-.. -+.+.+.++......+.+---
T Consensus 13 ia~r~~ra~r~~Gi---~tv~v~s~~d~~s~--------~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pG 81 (110)
T PF00289_consen 13 IAVRIIRALRELGI---ETVAVNSNPDTVST--------HVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPG 81 (110)
T ss_dssp HHHHHHHHHHHTTS---EEEEEEEGGGTTGH--------HHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEEST
T ss_pred HHHHHHHHHHHhCC---cceeccCchhcccc--------cccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccc
Confidence 45667778889985 44555554333222 222333444555111 467778777777777887777
Q ss_pred CCcccccchhchHHHHHhcCCCeeeEehh
Q 027845 180 WSLWSRDVEAEIVPTCSACRSSKLKIWSI 208 (218)
Q Consensus 180 ~n~~~~~~~~~l~~~~~~~g~i~i~~~sp 208 (218)
|..+.-. .++.+.|++.| +.++.=+|
T Consensus 82 yg~lse~--~~fa~~~~~~g-i~fiGp~~ 107 (110)
T PF00289_consen 82 YGFLSEN--AEFAEACEDAG-IIFIGPSP 107 (110)
T ss_dssp SSTTTTH--HHHHHHHHHTT--EESSS-H
T ss_pred cchhHHH--HHHHHHHHHCC-CEEECcCh
Confidence 7777766 58999999999 77664443
No 291
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.73 E-value=3.4e+02 Score=23.54 Aligned_cols=78 Identities=6% Similarity=-0.010 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHh-CC---cCEE---ecCcccHHHHHHHhc---CCCeeEEcccCCcccc-----cch---hchHH
Q 027845 132 KIPIEVTIGELKKLVEE-GK---IKYI---GLSEACAATIRRAHA---VHPITAVQLEWSLWSR-----DVE---AEIVP 193 (218)
Q Consensus 132 ~~~~~~~~~~l~~l~~~-G~---ir~i---Gvs~~~~~~l~~~~~---~~~~~~~q~~~n~~~~-----~~~---~~l~~ 193 (218)
..+++++.+++.+..+. |+ +-++ || |-+++.+.++.+ ..+..++-++||+... ... ..+.+
T Consensus 222 ~~~l~el~~a~~~~~~~~grri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 222 RIAPEELVELGEAYARATGYPIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 45788888888876544 32 1122 33 456665555544 4567888999997543 222 25677
Q ss_pred HHHhcCCCeeeEehhhHH
Q 027845 194 TCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 194 ~~~~~g~i~i~~~spl~g 211 (218)
..+++| +.+......+.
T Consensus 301 ~L~~~g-i~~tiR~~~G~ 317 (344)
T PRK14464 301 YLHRRG-VLTKVRNSAGQ 317 (344)
T ss_pred HHHHCC-ceEEEECCCCC
Confidence 788899 88877766543
No 292
>PRK00077 eno enolase; Provisional
Probab=25.71 E-value=4.8e+02 Score=23.20 Aligned_cols=96 Identities=5% Similarity=-0.025 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhC--CcCEEecC--cccHHHHHHHhcCCCeeE
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGLS--EACAATIRRAHAVHPITA 175 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 175 (218)
.+++.....+.+.++.+ ++.++-.|=+..+ |+.+.+|.+.- .+.-.|=- ..++..+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~D----~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEND----WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCcc----HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 45666666666665554 5677777744333 45555566553 45443322 246999999999888889
Q ss_pred EcccCCccccc-chhchHHHHHhcCCCeeeE
Q 027845 176 VQLEWSLWSRD-VEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 176 ~q~~~n~~~~~-~~~~l~~~~~~~g~i~i~~ 205 (218)
+|+..|-.-.- ...++...|+++| +.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~g-i~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAG-YTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcC-CeEEE
Confidence 99887754432 2248899999999 86543
No 293
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=25.49 E-value=77 Score=27.07 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHHHHHHHHCCCC-eeeccCCcCCCcHHHHHHHHhcC-CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC
Q 027845 40 MIALIHHAINSGIT-LLDTSDIYGPYTNEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD 117 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~-~~Dta~~Yg~g~se~~lg~~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg 117 (218)
..++|++....||. +|| +-|. .++-..+.+ ..+.++.++.-++.... -.+..+..--...-+|+.
T Consensus 212 ~~~aL~r~~P~GIDiYfe---NVGG----~~lDavl~nM~~~gri~~CG~ISqYN~------~~~~~~~~l~~ii~Kr~~ 278 (343)
T KOG1196|consen 212 LSAALKRCFPEGIDIYFE---NVGG----KMLDAVLLNMNLHGRIAVCGMISQYNL------ENPEGLHNLSTIIYKRIR 278 (343)
T ss_pred HHHHHHHhCCCcceEEEe---ccCc----HHHHHHHHhhhhccceEeeeeehhccc------cCCccccchhhheeeeEE
Confidence 55667777777887 555 2331 223333333 35778888877764331 223344444444445665
Q ss_pred CCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEE
Q 027845 118 IDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI 154 (218)
Q Consensus 118 ~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~i 154 (218)
+.. ++... .....++.++.|..+.++|||.+.
T Consensus 279 iqg--flv~d---~~d~~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 279 IQG--FLVSD---YLDKYPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred eee--EEeec---hhhhhHHHHHHHHHHHhcCceEEe
Confidence 443 22222 223457889999999999999986
No 294
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.44 E-value=4.5e+02 Score=22.76 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=53.1
Q ss_pred EeeecCCCC-----------CCHHHHHHHHHHHHHhCCcC----EEecC--cccHH---HHHHHhcCCCeeEEcccCCcc
Q 027845 124 YYQHRVDTK-----------IPIEVTIGELKKLVEEGKIK----YIGLS--EACAA---TIRRAHAVHPITAVQLEWSLW 183 (218)
Q Consensus 124 ~~lh~~d~~-----------~~~~~~~~~l~~l~~~G~ir----~iGvs--~~~~~---~l~~~~~~~~~~~~q~~~n~~ 183 (218)
+.||.|+.. .+++++++++.++.++-.-+ ++=+. |-+.+ .+.+++...+..++-++||+-
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 678888543 34688999999776542222 33232 34444 455555555677888899974
Q ss_pred ccc---c-h---hchHHHHHhcCCCeeeEehhhHH
Q 027845 184 SRD---V-E---AEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 184 ~~~---~-~---~~l~~~~~~~g~i~i~~~spl~g 211 (218)
... + . ..+.+..+++| +.+......+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~G-i~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAG-VPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CeEEEeCCCCc
Confidence 321 1 1 25666788889 88877766543
No 295
>PRK08084 DNA replication initiation factor; Provisional
Probab=25.39 E-value=92 Score=25.05 Aligned_cols=45 Identities=7% Similarity=0.138 Sum_probs=33.2
Q ss_pred ccceEeeecCCCCC---CH-HHHHHHHHHHHHhCCcCEEecCcccHHHH
Q 027845 120 CIDLYYQHRVDTKI---PI-EVTIGELKKLVEEGKIKYIGLSEACAATI 164 (218)
Q Consensus 120 ~lDl~~lh~~d~~~---~~-~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 164 (218)
..|+++|...+... .+ +++++.+..+++.|+++-|..|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 35888887765432 22 35678899999999999999998776663
No 296
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.34 E-value=3.5e+02 Score=21.56 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccC
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFG 89 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~ 89 (218)
.+.+++.++.+..++.|++.++-+-... ...+.+.+.-++.++--+-..|+..
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p~~~IGAGTVl~ 76 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVPEALIGAGTVLN 76 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCCCCEEEEeeccC
Confidence 3678899999999999999999884433 4556664443334443344556654
No 297
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=25.29 E-value=2.3e+02 Score=20.36 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCccceEeeecCCCCC-CHHHHHHHHHHHHHhCCcCEEecC
Q 027845 106 RACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLS 157 (218)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~-~~~~~~~~l~~l~~~G~ir~iGvs 157 (218)
+..+.+.|+.+....+|.+++...+... +..+....++.+.+.| |+-+-++
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG-VRLVSVT 102 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC-CEEEECc
Confidence 4556666666655667899998887764 4567788888888887 5555443
No 298
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.23 E-value=4.4e+02 Score=22.68 Aligned_cols=92 Identities=15% Similarity=0.040 Sum_probs=59.5
Q ss_pred CCCEEEEeccCCCCCC--------CCCCCCCHHHHHHHHHHHHHHcCC--CccceEeeec-CCCCCCHHHHHHHHHHHH-
Q 027845 79 RERVELATKFGISFAD--------GGKIRGDPAYVRACCEASLKRLDI--DCIDLYYQHR-VDTKIPIEVTIGELKKLV- 146 (218)
Q Consensus 79 r~~~~I~tK~~~~~~~--------~~~~~~~~~~i~~~~~~sL~~Lg~--~~lDl~~lh~-~d~~~~~~~~~~~l~~l~- 146 (218)
|..+.|+|-.+-.... +.....+++.+..++......+|+ ..++-+.+-. -++...++.++++++.+.
T Consensus 92 ~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~ 171 (343)
T PRK14468 92 RKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIMLH 171 (343)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhcc
Confidence 6667777776543321 134567889999999877766664 2456555554 566667788999998884
Q ss_pred HhCC---cCEEecCccc-HHHHHHHhcC
Q 027845 147 EEGK---IKYIGLSEAC-AATIRRAHAV 170 (218)
Q Consensus 147 ~~G~---ir~iGvs~~~-~~~l~~~~~~ 170 (218)
..|. .+.+.+|+.. +..+.++.+.
T Consensus 172 ~~g~~l~~r~itvST~G~~~~i~~L~~~ 199 (343)
T PRK14468 172 PQALAMSPRRVTLSTVGIPKGIRRLAEE 199 (343)
T ss_pred cccccccCceEEEECCCChHHHHHHHHh
Confidence 3443 2578887754 4456666654
No 299
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=25.18 E-value=3e+02 Score=20.63 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCc-CEEecCcccHHHHHHHhcCCCeeEEc
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQ 177 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q 177 (218)
+...-.+++++.+-|+..|-+.+|+=. +. ++..+..+.-..+.+.+.+|.. +.|-+|....-....+-+...+.+.+
T Consensus 6 DhaG~~lK~~l~~~L~~~g~eV~D~G~-~~-~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIraa~ 83 (144)
T TIGR00689 6 DHAGLELKSEIIEHLKQKGHEVIDCGT-LY-DERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGIRAAL 83 (144)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEcCC-CC-CCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 345567999999999999988888743 22 2335677888889999999998 78888887777666665555565555
Q ss_pred ccCCcccccchhchHHHHHhcCCCeeeEeh
Q 027845 178 LEWSLWSRDVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 178 ~~~n~~~~~~~~~l~~~~~~~g~i~i~~~s 207 (218)
+. + +.....+++|+..-|++.+
T Consensus 84 ~~------d--~~~A~~ar~hNnaNVl~lG 105 (144)
T TIGR00689 84 CV------D--EYTAALARQHNDANVLCLG 105 (144)
T ss_pred EC------C--HHHHHHHHHhcCCcEEEEC
Confidence 42 1 3556667777666666655
No 300
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=25.17 E-value=1.8e+02 Score=24.14 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH-HhCCcCEEecCccc------HHHHHHHhcCCCeeEEcccCCcccccchhchHHHHHhcCCCee
Q 027845 135 IEVTIGELKKLV-EEGKIKYIGLSEAC------AATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCSACRSSKL 203 (218)
Q Consensus 135 ~~~~~~~l~~l~-~~G~ir~iGvs~~~------~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i 203 (218)
++++++.+++++ +.-.+.-|=.+-++ .+.+.+..+...++.+-++==+++.. .++.+.|+++| +..
T Consensus 71 ~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~--~~~~~~~~~~g-l~~ 143 (259)
T PF00290_consen 71 LEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEES--EELREAAKKHG-LDL 143 (259)
T ss_dssp HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGH--HHHHHHHHHTT--EE
T ss_pred HHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHH--HHHHHHHHHcC-CeE
Confidence 345677777777 44444444333333 22222222223344443332222222 47778888888 543
No 301
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=25.16 E-value=3.9e+02 Score=21.99 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCCee-eccCCcCCCcHHHHHHHHhcC---CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 027845 38 PDMIALIHHAINSGITLL-DTSDIYGPYTNEILVGKALKG---GMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~-Dta~~Yg~g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (218)
+.+.+++++|.+.|+... .....++ ...+.+-+.++. ..-+.+.|.--+|.. .|..+.+-+....
T Consensus 112 ~~~~~~i~~a~~~G~~v~~~~eda~r--~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~---------~P~~v~~~~~~~~ 180 (262)
T cd07948 112 ESAVEVIEFVKSKGIEVRFSSEDSFR--SDLVDLLRVYRAVDKLGVNRVGIADTVGIA---------TPRQVYELVRTLR 180 (262)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeeCC--CCHHHHHHHHHHHHHcCCCEEEECCcCCCC---------CHHHHHHHHHHHH
Confidence 336777788889998633 2112222 123333333332 456678787777754 4888888888888
Q ss_pred HHcCCCccceEeeecCCCC
Q 027845 114 KRLDIDCIDLYYQHRVDTK 132 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~ 132 (218)
++++ ++ +-+|..+..
T Consensus 181 ~~~~---~~-i~~H~Hn~~ 195 (262)
T cd07948 181 GVVS---CD-IEFHGHNDT 195 (262)
T ss_pred HhcC---Ce-EEEEECCCC
Confidence 8776 23 466776544
No 302
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=25.15 E-value=4.7e+02 Score=23.13 Aligned_cols=99 Identities=8% Similarity=0.045 Sum_probs=53.8
Q ss_pred HHHHHHHHhcC----CC-CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC--ccceEeeecCCCCCC----
Q 027845 66 NEILVGKALKG----GM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID--CIDLYYQHRVDTKIP---- 134 (218)
Q Consensus 66 se~~lg~~l~~----~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~--~lDl~~lh~~d~~~~---- 134 (218)
.|+.|.+++++ .+ .+-++|.|-.-. +-+=..++...+++... -+.++.+|.|.....
T Consensus 80 g~~~L~~ai~ei~~~~~~P~~I~V~tTC~~------------e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G 147 (427)
T PRK02842 80 ANEELDRVVEELIKRRPNISVLFLVGSCPS------------EVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFTQG 147 (427)
T ss_pred cHHHHHHHHHHHHhccCCCCEEEEECCChH------------HhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHHHH
Confidence 56677777766 22 344666666542 22222333333333322 367888888876544
Q ss_pred HHHHHHHHHHHHH-----hCCcCEEecCc-ccHHHHHHHhcCCCeeEE
Q 027845 135 IEVTIGELKKLVE-----EGKIKYIGLSE-ACAATIRRAHAVHPITAV 176 (218)
Q Consensus 135 ~~~~~~~l~~l~~-----~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~ 176 (218)
.+.++++|-+... .+.|--+|..+ .+..++.++++...+.++
T Consensus 148 ~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~ 195 (427)
T PRK02842 148 EDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVV 195 (427)
T ss_pred HHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeE
Confidence 2344444443332 35566678655 334678888887655544
No 303
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.04 E-value=3.8e+02 Score=23.24 Aligned_cols=82 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcC------EEecCcccHHHHHHHhcC---CCeeEEcccCCccc------ccchh--chH
Q 027845 130 DTKIPIEVTIGELKKLVEEGKIK------YIGLSEACAATIRRAHAV---HPITAVQLEWSLWS------RDVEA--EIV 192 (218)
Q Consensus 130 d~~~~~~~~~~~l~~l~~~G~ir------~iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~------~~~~~--~l~ 192 (218)
+...++++++++++++.+.+..+ -|+--|.+.+.+.++.+. .+..++-++||++. +..+. .+.
T Consensus 240 ~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~ 319 (356)
T PRK14455 240 NRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFE 319 (356)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHH
Q ss_pred HHHHhcCCCeeeEehhhHH-h
Q 027845 193 PTCSACRSSKLKIWSIIKS-Y 212 (218)
Q Consensus 193 ~~~~~~g~i~i~~~spl~g-~ 212 (218)
+.++++| +.+......+. +
T Consensus 320 ~~L~~~g-i~v~ir~~~g~di 339 (356)
T PRK14455 320 DTLKKNG-VNCTIRREHGTDI 339 (356)
T ss_pred HHHHHCC-CcEEEeCCCCcch
No 304
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=25.01 E-value=3e+02 Score=20.76 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHH--hCCcCEEecCcccHHHHHHHhcCCCee
Q 027845 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE--EGKIKYIGLSEACAATIRRAHAVHPIT 174 (218)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~ 174 (218)
....+.+.+.+.+++..+.+|.+ ++++|-.. --++++.+.+..+ +|.|-.=|--++..-.++.++.....-
T Consensus 23 YG~~tl~~i~~~~~~~a~~~g~~-~~~~QSN~------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P 95 (146)
T PRK13015 23 YGHETLADVEALCRAAAEALGLE-VEFRQSNH------EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELP 95 (146)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCC
Confidence 34568899999999999999974 56555321 1256777777643 466666677777777888888876655
Q ss_pred EEcccCCcccc
Q 027845 175 AVQLEWSLWSR 185 (218)
Q Consensus 175 ~~q~~~n~~~~ 185 (218)
++.+..+-...
T Consensus 96 ~VEVHiSNi~a 106 (146)
T PRK13015 96 VIEVHISNVHA 106 (146)
T ss_pred EEEEEcCCccc
Confidence 77776665544
No 305
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=25.00 E-value=3e+02 Score=20.56 Aligned_cols=148 Identities=15% Similarity=0.114 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcC-CC-----cHHHHHHHHhcCCC-CCCEEEEeccCCCCCCCCCCCCCHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYG-PY-----TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRAC 108 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~g-----~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~ 108 (218)
.+|...+.++.|++.|.+.|++--... +| +.-..+-+++...+ +-.+.|=.|.... .+.+.+.
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~----------~~~~~~~ 80 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR----------YPGLEAK 80 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC----------chhHHHH
Confidence 346789999999999999887654322 11 00112223333322 2234455554211 2345555
Q ss_pred HHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcc--cHHHHH-HHhcCCCeeEEcccCCcccc
Q 027845 109 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA--CAATIR-RAHAVHPITAVQLEWSLWSR 185 (218)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~--~~~~l~-~~~~~~~~~~~q~~~n~~~~ 185 (218)
+-+.+++.+. .+=+++...++ +.+..+.+...+= .+|+... ...... .......++.+...+..+
T Consensus 81 l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 148 (189)
T cd08556 81 VAELLREYGL--EERVVVSSFDH-----EALRALKELDPEV---PTGLLVDKPPLDPLLAELARALGADAVNPHYKLL-- 148 (189)
T ss_pred HHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCCC---cEEEEeecCcccchhhhHHHhcCCeEEccChhhC--
Confidence 6666666653 23344443321 2333333332221 1222221 111111 112223345555554432
Q ss_pred cchhchHHHHHhcCCCeeeEehh
Q 027845 186 DVEAEIVPTCSACRSSKLKIWSI 208 (218)
Q Consensus 186 ~~~~~l~~~~~~~g~i~i~~~sp 208 (218)
...+++.|+++| +.+.+|..
T Consensus 149 --~~~~i~~~~~~g-~~v~~wtv 168 (189)
T cd08556 149 --TPELVRAAHAAG-LKVYVWTV 168 (189)
T ss_pred --CHHHHHHHHHcC-CEEEEEcC
Confidence 258899999999 99999864
No 306
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=25.00 E-value=4.3e+02 Score=22.44 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=53.6
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC----CCH--HHHHHHHHHHHHhCCc
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----IPI--EVTIGELKKLVEEGKI 151 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~----~~~--~~~~~~l~~l~~~G~i 151 (218)
-.+++.|..|+..... .....+.+... .+-+.|+..|+++++ +|..... .+. ...++.++++++.=.|
T Consensus 218 vG~d~~v~vri~~~~~--~~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i 291 (336)
T cd02932 218 WPEDKPLFVRISATDW--VEGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAGI 291 (336)
T ss_pred cCCCceEEEEEccccc--CCCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCCC
Confidence 3557788889875320 00123444333 333456677765555 4422110 111 1234566667776667
Q ss_pred CEEecCc-ccHHHHHHHhcCCCeeEEcc
Q 027845 152 KYIGLSE-ACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 152 r~iGvs~-~~~~~l~~~~~~~~~~~~q~ 178 (218)
-=++..+ .+++..+++++....|.+++
T Consensus 292 PVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 292 PVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 6677666 47888999988877777766
No 307
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=24.98 E-value=3.9e+02 Score=21.99 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHh--CCcCEEecCccc
Q 027845 135 IEVTIGELKKLVEE--GKIKYIGLSEAC 160 (218)
Q Consensus 135 ~~~~~~~l~~l~~~--G~ir~iGvs~~~ 160 (218)
..+++++++.+++. |.=-.+|+||-+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 34678889899988 888899999944
No 308
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=24.96 E-value=4.7e+02 Score=22.87 Aligned_cols=147 Identities=12% Similarity=-0.021 Sum_probs=84.2
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCc-HHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYT-NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~-se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
+.++..+.++.+.+.|++.|=.--...+-. ..+.+ +++++.-.+++-|..=.... .+.+... +.++
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v-~avRe~~G~~~~l~vDaN~~--------w~~~~A~----~~~~ 226 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRI-EAALDVLGDGARLAVDANGR--------FDLETAI----AYAK 226 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHH-HHHHHhcCCCCeEEEECCCC--------CCHHHHH----HHHH
Confidence 445566777778899999886532111001 12223 34444122233333322221 2343322 2333
Q ss_pred HcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC-EEecCcccHHHHHHHhcCCCe----eEEcccCCccc-ccch
Q 027845 115 RLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPI----TAVQLEWSLWS-RDVE 188 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~----~~~q~~~n~~~-~~~~ 188 (218)
.|. .+++.++-.|=+.. -++.+.+|.+...+- ..|=|-++...+.++++.... +++|+...-.- -...
T Consensus 227 ~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~ 300 (385)
T cd03326 227 ALA--PYGLRWYEEPGDPL----DYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEY 300 (385)
T ss_pred Hhh--CcCCCEEECCCCcc----CHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHH
Confidence 442 34666777664332 366677787776554 667777899999999887654 89999866432 1222
Q ss_pred hchHHHHHhcCCCe
Q 027845 189 AEIVPTCSACRSSK 202 (218)
Q Consensus 189 ~~l~~~~~~~g~i~ 202 (218)
..+.+.|+.+| +.
T Consensus 301 ~kia~lA~a~g-i~ 313 (385)
T cd03326 301 LRMLDVLEAHG-WS 313 (385)
T ss_pred HHHHHHHHHcC-CC
Confidence 58999999999 76
No 309
>PLN02540 methylenetetrahydrofolate reductase
Probab=24.93 E-value=5.7e+02 Score=23.87 Aligned_cols=148 Identities=12% Similarity=0.082 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCC-CEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHc
Q 027845 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRE-RVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~-~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 116 (218)
+...+.++.-...+-.|+|.+..-|....+.-+.-+-.- .+. .+-..-.+... +.+...+...++.. +.+
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~l-q~~~Gie~i~HLTCr-------d~n~~~L~~~L~~a-~~~ 85 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRM-QNMICVETMMHLTCT-------NMPVEKIDHALETI-KSN 85 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHH-HHhcCCCeeEEeeec-------CCCHHHHHHHHHHH-HHC
Confidence 345566666667899999988555443444443322211 111 12222222221 24566777777666 788
Q ss_pred CCCccceEeeecCCCC---------CCHHHHHHHHHHHHHh-CCcCEEecCcccH------------------HHHHHHh
Q 027845 117 DIDCIDLYYQHRVDTK---------IPIEVTIGELKKLVEE-GKIKYIGLSEACA------------------ATIRRAH 168 (218)
Q Consensus 117 g~~~lDl~~lh~~d~~---------~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~------------------~~l~~~~ 168 (218)
|+. .++.|....+. ..+..+.+-++.+++. |....||++.+.. ..+..+.
T Consensus 86 GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk 163 (565)
T PLN02540 86 GIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLK 163 (565)
T ss_pred CCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHH
Confidence 875 34444432111 1123344545555554 4466788885421 2344443
Q ss_pred cC----CCeeEEcccCCcccccchhchHHHHHhcC
Q 027845 169 AV----HPITAVQLEWSLWSRDVEAEIVPTCSACR 199 (218)
Q Consensus 169 ~~----~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 199 (218)
+. ..+-+-|.-|+. +.-...++.|++.|
T Consensus 164 ~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~G 195 (565)
T PLN02540 164 EKVDAGADLIITQLFYDT---DIFLKFVNDCRQIG 195 (565)
T ss_pred HHHHcCCCEEeeccccCH---HHHHHHHHHHHhcC
Confidence 33 457888887665 32247788899887
No 310
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=24.93 E-value=2e+02 Score=21.12 Aligned_cols=48 Identities=19% Similarity=0.136 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEE
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVE 83 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~ 83 (218)
+.++.+++...|++.++.++|-...--...+++-..+.+++.+.+++-
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l~ 109 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDLE 109 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG---HHHHHHHHTT--TTT--
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhcc
Confidence 457899999999999998887665443334565566667665555543
No 311
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.86 E-value=74 Score=26.18 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=26.7
Q ss_pred ccCcceecccccC------CCCCCCCChHHHHHHHHHHHHCCC
Q 027845 16 EVSAQGLGCMAMS------CLYGPPEPEPDMIALIHHAINSGI 52 (218)
Q Consensus 16 ~vs~lglG~~~~~------~~~~~~~~~~~~~~~l~~A~~~Gi 52 (218)
+.|-..+|..++. ..|.+..+++++.+++..|+.+||
T Consensus 158 ~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 158 KLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred ccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhh
Confidence 3444455544433 247777899999999999999998
No 312
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=24.79 E-value=3.6e+02 Score=21.44 Aligned_cols=22 Identities=9% Similarity=-0.105 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHCCCCeeec
Q 027845 36 PEPDMIALIHHAINSGITLLDT 57 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dt 57 (218)
|++++.++++.|++.|+...|+
T Consensus 13 D~~~~~~~l~~al~~~~~~~~i 34 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEI 34 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH
Confidence 6788999999999998766554
No 313
>PRK10508 hypothetical protein; Provisional
Probab=24.77 E-value=2.2e+02 Score=24.38 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHH
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLV 146 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~ 146 (218)
-.+++.+.+++++..+++|+|.+ +++.+. .+.++.++.++-|.
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla 327 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAM 327 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHH
Confidence 36899999999999999998876 333332 35555555555443
No 314
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=24.75 E-value=3.7e+02 Score=21.63 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHHHCCCCeeecc
Q 027845 36 PEPDMIALIHHAINSGITLLDTS 58 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta 58 (218)
-+|.....++.|++.|...|++-
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~D 42 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEFD 42 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEEE
Confidence 45779999999999999988654
No 315
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=24.75 E-value=3.9e+02 Score=21.87 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=42.2
Q ss_pred HHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC
Q 027845 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 170 (218)
.+.+...+...=|+++.-.....+ .+++.+++..++.| +.-|++++.....+.+..+.
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~aD~ 165 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRT--PYVLGALRYARARG-ALTIGIACNPGSPLLQLADI 165 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhCCE
Confidence 334455666677998877664433 46999999999998 77899999877777776433
No 316
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=24.58 E-value=4.6e+02 Score=22.62 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeee
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQH 127 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh 127 (218)
..+.+.+++.++..+ +++.+++.++.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 356777877777554 5888888887765
No 317
>PLN02907 glutamate-tRNA ligase
Probab=24.39 E-value=6.1e+02 Score=24.49 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHh
Q 027845 97 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (218)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 168 (218)
.+.........++.+.|+-||.++ |-.. -.+..++...++.++|+++|+. . +|..+.+++++..
T Consensus 256 dp~r~~~e~~~~I~~dl~wLG~~~-d~~~----~qS~r~~~y~~~a~~Li~~G~a--Y-~~~~~~~~~~~~~ 319 (722)
T PLN02907 256 NPSKESDEFVENILKDIETLGIKY-DAVT----YTSDYFPQLMEMAEKLIKEGKA--Y-VDDTPREQMRKER 319 (722)
T ss_pred CCCcCChHHHHHHHHHHHHcCCCC-CCcc----cccccHHHHHHHHHHHHHcCCe--e-ecCCCHHHHHHHH
Confidence 345566678889999999999975 4211 1234566788999999999984 3 3566677776653
No 318
>PRK09776 putative diguanylate cyclase; Provisional
Probab=24.38 E-value=2.1e+02 Score=28.40 Aligned_cols=101 Identities=13% Similarity=-0.017 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEeeecCCCC--CCHHHHHHHHHHHHHhCCcCEEecCcccHH--HHHHHhcCCCeeE
Q 027845 100 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIGLSEACAA--TIRRAHAVHPITA 175 (218)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~--~l~~~~~~~~~~~ 175 (218)
.....+...+.+.|++.+.. .+-+.+.-.+.. .+.+++.+.++.|++.|- .+.+.+|... .+..+ ...+++.
T Consensus 937 l~~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~--~~~lddfg~g~~~~~~l-~~~~~d~ 1012 (1092)
T PRK09776 937 LSSPTLLPFLLEQLENSPLP-PRLLHLEITETALLNHAESASRLVQKLRLAGC--RVVLSDFGRGLSSFNYL-KAFMADY 1012 (1092)
T ss_pred hCCchHHHHHHHHHHhcCCC-HHHeEEEEecHHhhcCHHHHHHHHHHHHHCCc--EEEEcCCCCCchHHHHH-HhCCCCE
Confidence 33445666777778777754 344444443332 456778899999999998 5555543321 22222 2234444
Q ss_pred EcccCCc--------ccccchhchHHHHHhcCCCeeeE
Q 027845 176 VQLEWSL--------WSRDVEAEIVPTCSACRSSKLKI 205 (218)
Q Consensus 176 ~q~~~n~--------~~~~~~~~l~~~~~~~g~i~i~~ 205 (218)
+=+.-+. -.+...+.++..|++.| +.+++
T Consensus 1013 iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ia 1049 (1092)
T PRK09776 1013 LKLDGELVANLHGNLMDEMLISIIQGHAQRLG-MKTIA 1049 (1092)
T ss_pred EEECHHHHHhHhcChhhHHHHHHHHHHHHHcC-CcEEe
Confidence 4444332 22223346777888888 76665
No 319
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.35 E-value=5.2e+02 Score=23.17 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=63.6
Q ss_pred CChHHHHHHHHHHHHCCCCee---e-ccCCcCCCc-HHHHHHHHhcCCC-CC---CEEEEeccCCCCCCCCCCCCCHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLL---D-TSDIYGPYT-NEILVGKALKGGM-RE---RVELATKFGISFADGGKIRGDPAYV 105 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~---D-ta~~Yg~g~-se~~lg~~l~~~~-r~---~~~I~tK~~~~~~~~~~~~~~~~~i 105 (218)
.+.++..+-++...+.|++.| | +-..||... ....+.+.++... .. .+-+.+ .. +..+
T Consensus 184 r~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~----~~---------p~~i 250 (459)
T PRK14338 184 RPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLT----SH---------PAWM 250 (459)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEe----cC---------hhhc
Confidence 467778888889999998766 2 223465321 1222334443311 11 222222 11 3334
Q ss_pred HHHHHHHHHHcC--CCccceEeeec-------CCCCCCHHHHHHHHHHHHHh--CCcCE----EecCcccHHHHHHHhcC
Q 027845 106 RACCEASLKRLD--IDCIDLYYQHR-------VDTKIPIEVTIGELKKLVEE--GKIKY----IGLSEACAATIRRAHAV 170 (218)
Q Consensus 106 ~~~~~~sL~~Lg--~~~lDl~~lh~-------~d~~~~~~~~~~~l~~l~~~--G~ir~----iGvs~~~~~~l~~~~~~ 170 (218)
...+-+.+++++ ..++++=+=+. .......++..++++.+++. |..-. +|+.+.+.+.+.+.++.
T Consensus 251 ~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~ 330 (459)
T PRK14338 251 TDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDL 330 (459)
T ss_pred CHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHH
Confidence 444444454443 33333321111 12234567888889888887 43211 58888887777666555
No 320
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=24.29 E-value=2e+02 Score=20.84 Aligned_cols=62 Identities=15% Similarity=0.052 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHH
Q 027845 99 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 167 (218)
+.+++.+.+.+++.|+..|...-++-.+..+|...+-..++++-+++. +-+--|+.++|...
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg-------~pl~~~~~~eL~~~ 74 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARHG-------WPLRAFSAAQLAAS 74 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhC-------CCeEEeCHHHHHhc
Confidence 468999999999999999987777777777665444333444433331 23334567777654
No 321
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=24.27 E-value=75 Score=16.96 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=14.0
Q ss_pred HHHHHHHHHCCCCeeecc
Q 027845 41 IALIHHAINSGITLLDTS 58 (218)
Q Consensus 41 ~~~l~~A~~~Gi~~~Dta 58 (218)
.+.++.++++|+..|-|-
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 467899999999998763
No 322
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.23 E-value=4e+02 Score=23.11 Aligned_cols=89 Identities=15% Similarity=0.074 Sum_probs=55.6
Q ss_pred CCCCCEEEEeccCCCCCC--------CCCCCCCHHHHHHHHHHHHHHcCCCccceEeeec-CCCCCCHHHHHHHHHHHHH
Q 027845 77 GMRERVELATKFGISFAD--------GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTKIPIEVTIGELKKLVE 147 (218)
Q Consensus 77 ~~r~~~~I~tK~~~~~~~--------~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d~~~~~~~~~~~l~~l~~ 147 (218)
+++..++|+|-.+-.... +.....+++.+..++....+. ..+|-+.+-. -++....++++++++.+.+
T Consensus 93 i~~~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~---~~i~nIVfmGmGEPl~N~d~vl~ai~~l~~ 169 (344)
T PRK14464 93 LPRDGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRR---RAVKKVVFMGMGEPAHNLDNVLEAIDLLGT 169 (344)
T ss_pred ecCCcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhc---CCCCEEEEeccCcccCCHHHHHHHHHHhhc
Confidence 467788888887754422 123456889999999877663 3456555555 5666777889999888876
Q ss_pred hCC--cCEEecCcc-cHHHHHHHh
Q 027845 148 EGK--IKYIGLSEA-CAATIRRAH 168 (218)
Q Consensus 148 ~G~--ir~iGvs~~-~~~~l~~~~ 168 (218)
.+. .+.|=+|.. ....+.++.
T Consensus 170 ~~~i~~r~itiST~G~~~~i~rL~ 193 (344)
T PRK14464 170 EGGIGHKNLVFSTVGDPRVFERLP 193 (344)
T ss_pred hhcCCCceEEEecccCchHHHHHH
Confidence 632 244444542 233344443
No 323
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=24.16 E-value=2.6e+02 Score=19.53 Aligned_cols=73 Identities=19% Similarity=0.156 Sum_probs=46.7
Q ss_pred CCChHHHHHHHHHHHHCCCCe-eeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHH
Q 027845 34 PEPEPDMIALIHHAINSGITL-LDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~-~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (218)
..++++..+-+++.+..|.+. ++-|+.-. .|...+-.=|.... ...+++.+...|+.+
T Consensus 10 ~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r~---------------~r~~~W~mW~~p~~------~~~~~~~Vl~el~~c 68 (99)
T PF00101_consen 10 PLTDEEIAKQVRYLLSQGWIIGIEHADPRR---------------FRTSYWQMWKLPMF------GCTDPAQVLAELEAC 68 (99)
T ss_dssp ---HHHHHHHHHHHHHTT-EEEEEEESCGG---------------STSSS-EEESSEBT------TBSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhhcCceeeEEecCCCC---------------CCCCEeecCCCCCc------CCCCHHHHHHHHHHH
Confidence 345677999999999999875 55443211 33333332233222 246899999999999
Q ss_pred HHHcCCCccceEeee
Q 027845 113 LKRLDIDCIDLYYQH 127 (218)
Q Consensus 113 L~~Lg~~~lDl~~lh 127 (218)
++.---+|+-|+=+.
T Consensus 69 ~~~~p~~yVRlig~D 83 (99)
T PF00101_consen 69 LAEHPGEYVRLIGFD 83 (99)
T ss_dssp HHHSTTSEEEEEEEE
T ss_pred HHhCCCceEEEEEEc
Confidence 999988888876544
No 324
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=24.14 E-value=2.3e+02 Score=22.19 Aligned_cols=84 Identities=10% Similarity=-0.075 Sum_probs=50.8
Q ss_pred CccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEcccCC-cccccchhchHHHHHh
Q 027845 119 DCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWS-LWSRDVEAEIVPTCSA 197 (218)
Q Consensus 119 ~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~l~~~~~~ 197 (218)
....+..+.+.. .-+...+|.+.|.. .+-+.-.+.+.|.++++.......-...+ .-.......+++.|++
T Consensus 21 ~~~~V~~l~R~~-------~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 21 AGFSVRALVRDP-------SSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp TTGCEEEEESSS-------HHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-------chhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 345677777654 22334566667764 55666667888888888655444444332 2222233589999999
Q ss_pred cCCCeeeEehhhHH
Q 027845 198 CRSSKLKIWSIIKS 211 (218)
Q Consensus 198 ~g~i~i~~~spl~g 211 (218)
.| +..+.+|-++.
T Consensus 93 ag-Vk~~v~ss~~~ 105 (233)
T PF05368_consen 93 AG-VKHFVPSSFGA 105 (233)
T ss_dssp HT--SEEEESEESS
T ss_pred cc-cceEEEEEecc
Confidence 99 88888887754
No 325
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.14 E-value=5e+02 Score=22.93 Aligned_cols=105 Identities=14% Similarity=0.031 Sum_probs=59.5
Q ss_pred CCcCCCcHHHHHHHHhcC----CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCC
Q 027845 59 DIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP 134 (218)
Q Consensus 59 ~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~ 134 (218)
-.|| .|+.|-+++++ .+.+-++|.|-..+. .--+++..-+++. ++.+ ++++.++.|....+
T Consensus 66 ~V~G---g~~kL~~~I~~~~~~~~p~~I~V~ttC~~~--------~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~ 130 (427)
T cd01971 66 IVFG---GEDRLRELIKSTLSIIDADLFVVLTGCIAE--------IIGDDVGAVVSEF-QEGG---APIVYLETGGFKGN 130 (427)
T ss_pred eEeC---CHHHHHHHHHHHHHhCCCCEEEEEcCCcHH--------HhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcc
Confidence 3466 46677777766 345556677665432 2233444444444 4443 68999999876543
Q ss_pred ----HHHHHHHHHH-HHH------hCCcCEEecCc-------ccHHHHHHHhcCCCeeEEcc
Q 027845 135 ----IEVTIGELKK-LVE------EGKIKYIGLSE-------ACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 135 ----~~~~~~~l~~-l~~------~G~ir~iGvs~-------~~~~~l~~~~~~~~~~~~q~ 178 (218)
.+.++++|-+ +.. .+.|--||..+ -+.+++.++++...+.++.+
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 131 NYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred cccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 3344554443 222 23466778542 24578888888855544433
No 326
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.03 E-value=4e+02 Score=21.68 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCCCcHH-HHHHHHh
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNE-ILVGKAL 74 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se-~~lg~~l 74 (218)
.+.++..++++.-.+.|+..++.....- +..+ +.+.+..
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~~-~~~~~e~~~~l~ 56 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPAM-GEEEREAIRAIV 56 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC-CHHHHHHHHHHH
Confidence 3667889999999999999999973221 2344 4444443
No 327
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=24.01 E-value=3.1e+02 Score=24.49 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=58.6
Q ss_pred CCcCCCcHHHHHHHHhcC----CCC-CCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCC
Q 027845 59 DIYGPYTNEILVGKALKG----GMR-ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI 133 (218)
Q Consensus 59 ~~Yg~g~se~~lg~~l~~----~~r-~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~ 133 (218)
-.|| .|+.|.+++.+ .++ +-++|.|-..... .-+++..-+++.-++.+ +.++.+|.|+...
T Consensus 97 ~V~G---g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~l--------iGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g 162 (443)
T TIGR01862 97 IVFG---GEKKLKKLIHEAFTEFPLIKAISVYATCPTGL--------IGDDIEAVAKEVSKEIG---KDVVAVNCPGFAG 162 (443)
T ss_pred eeeC---cHHHHHHHHHHHHHhCCccceEEEECCChHHH--------hccCHHHHHHHHHHhcC---CCEEEEecCCccC
Confidence 3466 56677777776 344 5577777655322 23344444444444544 6899999987654
Q ss_pred C-----HHHHHHH-HHHHH--------HhCCcCEEecCcc--cHHHHHHHhcCCCeeE
Q 027845 134 P-----IEVTIGE-LKKLV--------EEGKIKYIGLSEA--CAATIRRAHAVHPITA 175 (218)
Q Consensus 134 ~-----~~~~~~~-l~~l~--------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~ 175 (218)
. +..+.++ ++++. +.++|--||-.++ +.+++.++++...+.+
T Consensus 163 ~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v 220 (443)
T TIGR01862 163 VSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQV 220 (443)
T ss_pred CccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeE
Confidence 2 2333443 33443 2456777775553 4557888887754443
No 328
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.99 E-value=2.2e+02 Score=21.71 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC-CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 027845 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG-GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI 118 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~-~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (218)
..-+-....+.|++.......- ..+..+.++++. ..+.+++|+| .|... ...+...+++.+.+ |.
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~dlVItt-GG~G~-------t~~D~t~ea~~~~~---~~ 86 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVG---DDEDRIAEALRRASERADLVITT-GGLGP-------THDDLTREAVAKAF---GR 86 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeC---CCHHHHHHHHHHHHhCCCEEEEC-CCCCC-------CCCChHHHHHHHHh---CC
Confidence 3333344456799876655432 355666677765 3578899888 44433 12334444444332 32
Q ss_pred CccceEeeecCCCCCCHHHHHHHHHHHHHh
Q 027845 119 DCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (218)
Q Consensus 119 ~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~ 148 (218)
+ -...+++++.|++...+
T Consensus 87 ~------------l~~~~e~~~~i~~~~~~ 104 (170)
T cd00885 87 P------------LVLDEEALERIEARFAR 104 (170)
T ss_pred C------------cccCHHHHHHHHHHHHh
Confidence 1 12234677777776654
No 329
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=23.97 E-value=3.8e+02 Score=21.49 Aligned_cols=134 Identities=15% Similarity=0.124 Sum_probs=77.2
Q ss_pred CCChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 027845 34 PEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (218)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (218)
..++++..++++.|.+.|+.-+-..+.|- ....+.| ....+-|.|=++.... ....+.-....++++
T Consensus 18 ~~t~~~i~~~~~~A~~~~~~avcv~p~~v-----~~a~~~l---~~~~v~v~tVigFP~G-----~~~~~~K~~e~~~Ai 84 (221)
T PRK00507 18 EATEEDIDKLCDEAKEYGFASVCVNPSYV-----KLAAELL---KGSDVKVCTVIGFPLG-----ANTTAVKAFEAKDAI 84 (221)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHHH-----HHHHHHh---CCCCCeEEEEecccCC-----CChHHHHHHHHHHHH
Confidence 45778899999999999998888776654 2333444 3355778888764331 112222223333333
Q ss_pred HHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh--CCcCEE--ecCcccHHHHHHHhcC---CCeeEEcccCC
Q 027845 114 KRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYI--GLSEACAATIRRAHAV---HPITAVQLEWS 181 (218)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~--G~ir~i--Gvs~~~~~~l~~~~~~---~~~~~~q~~~n 181 (218)
+.|.+-+|++.=-..-...+++.+.+.+.++++. |.+-.+ =.+-.+.+++.++.+. ...+.+...-.
T Consensus 85 -~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG 158 (221)
T PRK00507 85 -ANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTG 158 (221)
T ss_pred -HcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 4788889965332222234577788888888874 432222 1122456666665544 44555555433
No 330
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=23.96 E-value=3.6e+02 Score=22.33 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=13.9
Q ss_pred HHHHHHHCCCCeeeccCC
Q 027845 43 LIHHAINSGITLLDTSDI 60 (218)
Q Consensus 43 ~l~~A~~~Gi~~~Dta~~ 60 (218)
-+...++.|+|+||--..
T Consensus 46 sI~~QL~~GvR~LdLdv~ 63 (267)
T cd08590 46 SITDQLDLGARFLELDVH 63 (267)
T ss_pred CHHHHHhhCCcEEEEeee
Confidence 467788999999985443
No 331
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=23.95 E-value=3.1e+02 Score=22.90 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHC--CCCeeeccCCcCCCcHHHHHHHHhcCCC-CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 38 PDMIALIHHAINS--GITLLDTSDIYGPYTNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 38 ~~~~~~l~~A~~~--Gi~~~Dta~~Yg~g~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
+.|..+.++++.+ |+.+.-.-..|- .+++.+-+++.+.. ..-+++.|=+. ..+++.+++.++
T Consensus 16 eTAe~v~~A~l~QF~~~~~~~~~~p~v--~~~~~~~~i~~~~~~~~~iV~~Tlv~-------------~elr~~l~~~~~ 80 (269)
T PRK05339 16 ETAETVGRAALSQFPNVEFEEHRYPFV--RTEEKADEVLEEINAERPIVFYTLVD-------------PELREILEERCA 80 (269)
T ss_pred HHHHHHHHHHHHhCCCCCeeEEEeCCc--CCHHHHHHHHHHHHhcCCEEEEeCCC-------------HHHHHHHHHHHH
Confidence 4566777777655 444321112222 46666666666633 44566666543 358999999999
Q ss_pred HcCCCccceE
Q 027845 115 RLDIDCIDLY 124 (218)
Q Consensus 115 ~Lg~~~lDl~ 124 (218)
.+|+.++|++
T Consensus 81 ~~~i~~vdll 90 (269)
T PRK05339 81 EFGIPCIDIL 90 (269)
T ss_pred HcCCCEEecc
Confidence 9999999997
No 332
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=23.92 E-value=3.3e+02 Score=25.51 Aligned_cols=95 Identities=6% Similarity=-0.049 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHcCCCccceE-----eeecCCCCCCHHHHHHHHHHHHHhCC-cC---------EEecCcccHHHHH
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLY-----YQHRVDTKIPIEVTIGELKKLVEEGK-IK---------YIGLSEACAATIR 165 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~-----~lh~~d~~~~~~~~~~~l~~l~~~G~-ir---------~iGvs~~~~~~l~ 165 (218)
+.+... .+-..|.++|+..|+++ -.-.+--.. +-|+.|+.+++... ++ .+|.+++..+.+.
T Consensus 25 ~~~d~l-~ia~~ld~~G~~siE~~GGatf~~~~~~~~e---~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~ 100 (593)
T PRK14040 25 RLDDML-PIAAKLDKVGYWSLESWGGATFDACIRFLGE---DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVE 100 (593)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEecCCcchhhhccccCC---CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHH
Confidence 344333 35566778898888882 100111112 23556666555433 22 2677776656544
Q ss_pred HHhcC---CCeeEEcccCCcccccchhchHHHHHhcC
Q 027845 166 RAHAV---HPITAVQLEWSLWSRDVEAEIVPTCSACR 199 (218)
Q Consensus 166 ~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 199 (218)
..++. ..++++-+-..+-+.+.....++++++.|
T Consensus 101 ~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G 137 (593)
T PRK14040 101 RFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVG 137 (593)
T ss_pred HHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcC
Confidence 44433 33455555443333333347788899888
No 333
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=23.85 E-value=3.5e+02 Score=20.96 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeecCC--CCCCHHHHHHHHHHHHHhCCcCEEecCccc--HHHHHHHhcCCCeeEEc
Q 027845 102 PAYVRACCEASLKRLDIDCIDLYYQHRVD--TKIPIEVTIGELKKLVEEGKIKYIGLSEAC--AATIRRAHAVHPITAVQ 177 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d--~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~q 177 (218)
.+.....+...++..+..- +-+.+--++ ...+...+.+.++.+++.|- .+++.++. ...+..+ ...+|+++=
T Consensus 97 ~~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l-~~~~~d~iK 172 (240)
T cd01948 97 DPDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYL-KRLPVDYLK 172 (240)
T ss_pred CcHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHH-HhCCCCEEE
Confidence 3445677778888887653 223333232 22345568899999999998 66666643 2233333 334566666
Q ss_pred ccCCcccc--------cchhchHHHHHhcCCCeeeEeh
Q 027845 178 LEWSLWSR--------DVEAEIVPTCSACRSSKLKIWS 207 (218)
Q Consensus 178 ~~~n~~~~--------~~~~~l~~~~~~~g~i~i~~~s 207 (218)
+..+.+.. ...+.++..|+.+| +.+++-.
T Consensus 173 ld~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~via~g 209 (240)
T cd01948 173 IDRSFVRDIETDPEDRAIVRAIIALAHSLG-LKVVAEG 209 (240)
T ss_pred ECHHHHHhHhcChhhHHHHHHHHHHHHHCC-CeEEEEe
Confidence 65544333 12236788888888 7776643
No 334
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=23.83 E-value=99 Score=21.28 Aligned_cols=52 Identities=23% Similarity=0.181 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc
Q 027845 104 YVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (218)
Q Consensus 104 ~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 158 (218)
.+...|=.-|.+.|.||.=.+--.. ..+++++-+.+++|.+.|.|..+.-+.
T Consensus 7 ~l~~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 7 PLDLKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred hhHHHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 3445566667777777655443332 467889999999999999999887553
No 335
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=23.80 E-value=1.9e+02 Score=24.39 Aligned_cols=133 Identities=12% Similarity=0.089 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccC----------CcCCC--cHHHHHHHHhcCCC-CCCEEEEeccCCCCCCCCCCCCCH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSD----------IYGPY--TNEILVGKALKGGM-RERVELATKFGISFADGGKIRGDP 102 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~----------~Yg~g--~se~~lg~~l~~~~-r~~~~I~tK~~~~~~~~~~~~~~~ 102 (218)
+++...++.+.+.+.|+..||--- .+|.+ ..-+.+.+.++... .-.+-|+.|+-..+ +.+.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~------~~~~ 137 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW------DDSP 137 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC------T--C
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc------ccch
Confidence 667788888888888999998532 23322 23445555554411 12255666654333 1123
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCCCCCH--HHHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCCCeeEEcc
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 178 (218)
+...+ +-+.|+..| +|.+.+|.-...... .--|+.+.++++.=.|--|+=.+ ++.+...+.++....+.+++
T Consensus 138 ~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 138 EETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred hHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 33333 445667777 688999985433322 34688888888877765555444 78888888888756666665
No 336
>PF03472 Autoind_bind: Autoinducer binding domain; InterPro: IPR005143 This domain binds N-acyl homoserine lactones (AHLs), which are also known as autoinducers. These are small, diffusible molecules used as communication signals in a large variety of proteobacteria. It is almost always found in association with the DNA-binding LuxR domain (IPR000792 from INTERPRO). The autoinducer binding domain forms the N-terminal region of the protein, while the DNA-binding domain forms the C-terminal region. In most cases, binding of AHL by this N-terminal domain leads to unmasking of the DNA-binding domain, allowing it to bind DNA and activate transcription []. In rare cases, some LuxR proteins such as EsaR, act as repressors []. In these proteins binding of AHL to this domain leads to inactivation of the protein as a transcriptional regulator. A large number of processes have been shown to be regulated by LuxR proteins, including bioluminescence, production of virulence factors in plant and animal pathogens, antibiotic production and plasmid transfer. Structural studies of TraR from Agrobacterium tumefaciens [, ] show that the functional protein is a homodimer. Binding of the cognate AHL is required for protein folding, resistance to proteases and dimerisation. The autoinducer binding domain binds its cognate AHL in an alpha/beta/alpha sandwich and provides an extensive dimerisation surface, though residues from the C-terminal region also make some contribution to dimerisation. The autoinducer binding domain is also required for interaction with RpoA, allowing transcription to occur []. There are some proteins which consist solely of the autoinducer binding domain. The function of these is not known, but TrlR from Agrobacterium has been shown to inhibit the activity of TraR by the formation of inactive heterodimers [].; PDB: 3SZT_A 1H0M_A 1L3L_B 2Q0O_B 2UV0_F 3IX8_A 3IX4_C 3IX3_A 3JPU_D 3QP8_A ....
Probab=23.70 E-value=2.7e+02 Score=19.67 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHcCCCccceE
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLY 124 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~ 124 (218)
+.+.+.+.+.+.++.+|.+++=+.
T Consensus 1 t~~~l~~~l~~~~~~~Gf~~~~~~ 24 (149)
T PF03472_consen 1 TEDELWDLLERLAARLGFDRFAYG 24 (149)
T ss_dssp SHHHHHHHHHHHHHCTTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 467889999999999998876665
No 337
>PF12728 HTH_17: Helix-turn-helix domain
Probab=23.67 E-value=1.6e+02 Score=17.04 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCcCEEecCc---ccHHHHHHHhc
Q 027845 140 GELKKLVEEGKIKYIGLSE---ACAATIRRAHA 169 (218)
Q Consensus 140 ~~l~~l~~~G~ir~iGvs~---~~~~~l~~~~~ 169 (218)
..+.++.++|.+..+++.. ++.+.+.+.++
T Consensus 16 ~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (51)
T PF12728_consen 16 STVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLE 48 (51)
T ss_pred HHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHH
Confidence 4567888899998888644 66667666654
No 338
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=23.65 E-value=4.8e+02 Score=22.55 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC---CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG---GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
+.+.++++.|.+.|.. +.-+.........+.+-+..+. ..-+.+.|.-.+|... |..+.+-++...+
T Consensus 113 ~~~~~~i~~ak~~g~~-v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~---------P~~v~~lv~~l~~ 182 (365)
T TIGR02660 113 ERLARLVSFARDRGLF-VSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILD---------PFSTYELVRALRQ 182 (365)
T ss_pred HHHHHHHHHHHhCCCE-EEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCC---------HHHHHHHHHHHHH
Q ss_pred HcCCCccceEeeecCCCC-CCHHHHHHHHH
Q 027845 115 RLDIDCIDLYYQHRVDTK-IPIEVTIGELK 143 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~-~~~~~~~~~l~ 143 (218)
++++. +-+|..++. .....++.+++
T Consensus 183 ~~~v~----l~~H~HNd~GlA~ANalaA~~ 208 (365)
T TIGR02660 183 AVDLP----LEMHAHNDLGMATANTLAAVR 208 (365)
T ss_pred hcCCe----EEEEecCCCChHHHHHHHHHH
No 339
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.54 E-value=2e+02 Score=28.38 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCCc--cceEeeecCCCCCCH---HHHHHHHHHHHHhCCcCEEecCcccHHHHHHH
Q 027845 105 VRACCEASLKRLDIDC--IDLYYQHRVDTKIPI---EVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (218)
Q Consensus 105 i~~~~~~sL~~Lg~~~--lDl~~lh~~d~~~~~---~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 167 (218)
+-=++.-+|..+=..+ ++++++.-|....|. +.+.++|+.+... ++.|||-+|..+-.+.+
T Consensus 824 ~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~e~~ 889 (908)
T COG0419 824 ASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELKERA 889 (908)
T ss_pred HHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHhC
Confidence 3344555666665556 999999999877664 4688889998888 88999999887765443
No 340
>PRK03995 hypothetical protein; Provisional
Probab=23.43 E-value=4.3e+02 Score=22.03 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHcCCC
Q 027845 104 YVRACCEASLKRLDID 119 (218)
Q Consensus 104 ~i~~~~~~sL~~Lg~~ 119 (218)
..++.+.+.|+.+|++
T Consensus 248 ~~r~~i~~~le~~gi~ 263 (267)
T PRK03995 248 EDRERIIEFLEELGIE 263 (267)
T ss_pred HHHHHHHHHHHHCCCe
Confidence 4566677777777654
No 341
>PRK04132 replication factor C small subunit; Provisional
Probab=23.31 E-value=4.3e+02 Score=26.03 Aligned_cols=93 Identities=8% Similarity=0.125 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHcCCC--ccceEeeecCCCCCCHHHHHHHHHHHHHh--CCcCEEecCcccHHHHHHHhcCCCeeEE
Q 027845 101 DPAYVRACCEASLKRLDID--CIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAV 176 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~--~lDl~~lh~~d~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 176 (218)
+-+.++..++.....-... ..=+++|...|... .+..++|.+..++ +.++.|.++|.....+..+.. .|.
T Consensus 609 gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS----RC~ 682 (846)
T PRK04132 609 GINVIREKVKEFARTKPIGGASFKIIFLDEADALT--QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS----RCA 682 (846)
T ss_pred cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC--HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh----hce
Confidence 4566776666554332221 23488888776544 3688899999986 999999999966444444433 367
Q ss_pred cccCCccccc-chhchHHHHHhcC
Q 027845 177 QLEWSLWSRD-VEAEIVPTCSACR 199 (218)
Q Consensus 177 q~~~n~~~~~-~~~~l~~~~~~~g 199 (218)
.+.|.++... ....+...|++.|
T Consensus 683 ~i~F~~ls~~~i~~~L~~I~~~Eg 706 (846)
T PRK04132 683 IFRFRPLRDEDIAKRLRYIAENEG 706 (846)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhcC
Confidence 7777776654 2224445566656
No 342
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=23.22 E-value=45 Score=20.75 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=10.5
Q ss_pred hchHHHHHhcCCCee
Q 027845 189 AEIVPTCSACRSSKL 203 (218)
Q Consensus 189 ~~l~~~~~~~g~i~i 203 (218)
++++++|+++| +-+
T Consensus 30 ~eV~~YC~~~G-WIi 43 (57)
T PF08727_consen 30 PEVREYCEEQG-WII 43 (57)
T ss_dssp HHHHHHHHHHT---T
T ss_pred HHHHHHHHHCC-ccc
Confidence 58999999999 644
No 343
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=23.19 E-value=4.7e+02 Score=22.28 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCc--------CCC----cHHHHHHHHhcCC---CCCCEEEEeccCCCCCCCCCCCC
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIY--------GPY----TNEILVGKALKGG---MRERVELATKFGISFADGGKIRG 100 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Y--------g~g----~se~~lg~~l~~~---~r~~~~I~tK~~~~~~~~~~~~~ 100 (218)
+++...++.+.+-+.|+..||---.. |.| .+.+.+.+.++.. .. ++-|+.|+-..++
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d------- 148 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWD------- 148 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccC-------
Confidence 55778888899999999999854321 112 3455566666551 12 6788888754441
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCH--HHHHHHHHHHHHhCC-cCEEecCc-ccHHHHHHHhcCCCeeEE
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI--EVTIGELKKLVEEGK-IKYIGLSE-ACAATIRRAHAVHPITAV 176 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~--~~~~~~l~~l~~~G~-ir~iGvs~-~~~~~l~~~~~~~~~~~~ 176 (218)
+.+.....+.+.++.-| +|.+.+|.-...... ..-|+.+.++++.=. |--|+=.+ ++++...+.++....|.+
T Consensus 149 ~~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgV 225 (323)
T COG0042 149 DDDILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGV 225 (323)
T ss_pred cccccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEE
Confidence 12234455666666776 578899975322211 135788888887766 54554444 788888888887666666
Q ss_pred cc
Q 027845 177 QL 178 (218)
Q Consensus 177 q~ 178 (218)
++
T Consensus 226 Mi 227 (323)
T COG0042 226 MI 227 (323)
T ss_pred EE
Confidence 65
No 344
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=23.02 E-value=4.3e+02 Score=21.71 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=21.1
Q ss_pred HHHHHHhCCcCEEecCcccHHHHHHHhcC
Q 027845 142 LKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 142 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 170 (218)
++.+++.|.-+.+=+++|+++.+..+...
T Consensus 156 ~~~i~~~~~~~~vi~sSF~~~~l~~~~~~ 184 (286)
T cd08606 156 LEKVFDYGAGRNIIFSSFTPDICILLSLK 184 (286)
T ss_pred HHHHHhcCCCCceEEEcCCHHHHHHHHhh
Confidence 34445557677899999999988777554
No 345
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.86 E-value=3.8e+02 Score=21.88 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCC--------------------------ccceEeeecCCCCCCH---HHHHHHHHHHHHhC
Q 027845 99 RGDPAYVRACCEASLKRLDID--------------------------CIDLYYQHRVDTKIPI---EVTIGELKKLVEEG 149 (218)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~--------------------------~lDl~~lh~~d~~~~~---~~~~~~l~~l~~~G 149 (218)
..+.+..++...+.|++.|+. ..+++++..|....|+ .|+++.|.+|.++|
T Consensus 107 ~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 107 KLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 345666666677777777643 3566666666655554 48999999999999
Q ss_pred CcCEEecCcccHHHHHHHhcC
Q 027845 150 KIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 150 ~ir~iGvs~~~~~~l~~~~~~ 170 (218)
.. .-+.+|...-.++..+.
T Consensus 187 mT--MivVTHEM~FAr~Vadr 205 (240)
T COG1126 187 MT--MIIVTHEMGFAREVADR 205 (240)
T ss_pred Ce--EEEEechhHHHHHhhhe
Confidence 63 34444554444444444
No 346
>TIGR00035 asp_race aspartate racemase.
Probab=22.82 E-value=3.9e+02 Score=21.22 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCC------------CCHHHHHHHHHHHHHhCCcCEEecCcccHHH-HHHH
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTK------------IPIEVTIGELKKLVEEGKIKYIGLSEACAAT-IRRA 167 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~-l~~~ 167 (218)
+.+..++=++.+-.+.+.++++++.+++|+.. .....+.+.++.|.+.| +..|-++..++.. +.++
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~~l 93 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAEDI 93 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHHHH
Confidence 45556666666667888999999999998431 11234666777776655 6888877655544 3344
Q ss_pred h
Q 027845 168 H 168 (218)
Q Consensus 168 ~ 168 (218)
.
T Consensus 94 ~ 94 (229)
T TIGR00035 94 Q 94 (229)
T ss_pred H
Confidence 3
No 347
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=22.67 E-value=3.6e+02 Score=21.81 Aligned_cols=74 Identities=26% Similarity=0.351 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCC-cCEEecCcc------cHHHHHHHhcC-----CCeeEEcccCCcccc---c--chhchHHHHHhc
Q 027845 136 EVTIGELKKLVEEGK-IKYIGLSEA------CAATIRRAHAV-----HPITAVQLEWSLWSR---D--VEAEIVPTCSAC 198 (218)
Q Consensus 136 ~~~~~~l~~l~~~G~-ir~iGvs~~------~~~~l~~~~~~-----~~~~~~q~~~n~~~~---~--~~~~l~~~~~~~ 198 (218)
...++-+++|++.|. |-.||+-.+ ++..+...++. .|+.+-.+.+..... + .-+.+++.|.++
T Consensus 136 ~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~ 215 (254)
T smart00633 136 QAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAH 215 (254)
T ss_pred HHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcC
Confidence 356888889999998 889998654 45566666554 344444444433211 1 124788888877
Q ss_pred -CCCeeeEehhh
Q 027845 199 -RSSKLKIWSII 209 (218)
Q Consensus 199 -g~i~i~~~spl 209 (218)
++.||+.|+-.
T Consensus 216 p~v~gi~~Wg~~ 227 (254)
T smart00633 216 PAVTGVTVWGVT 227 (254)
T ss_pred CCeeEEEEeCCc
Confidence 44678777644
No 348
>PLN02321 2-isopropylmalate synthase
Probab=22.57 E-value=6.7e+02 Score=23.79 Aligned_cols=82 Identities=9% Similarity=0.053 Sum_probs=44.6
Q ss_pred HHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC---CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHc
Q 027845 40 MIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG---GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 116 (218)
+.+.+++|.+.|...+..+.-++.......+-+.++. ..-+.+.|.--+|... |..+.+.++...+++
T Consensus 212 ~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~---------P~~v~~li~~l~~~~ 282 (632)
T PLN02321 212 ARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTL---------PSEFGQLIADIKANT 282 (632)
T ss_pred HHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCC---------HHHHHHHHHHHHHhc
Confidence 5667777777876433222222221233333333332 3466677777777544 778888888777776
Q ss_pred CC-CccceEeeecCCC
Q 027845 117 DI-DCIDLYYQHRVDT 131 (218)
Q Consensus 117 g~-~~lDl~~lh~~d~ 131 (218)
.. +.+ .+-+|..++
T Consensus 283 ~~~~~v-~i~vH~HND 297 (632)
T PLN02321 283 PGIENV-IISTHCQND 297 (632)
T ss_pred CCCCCc-eEEEEeCCC
Confidence 42 112 245666543
No 349
>PRK07328 histidinol-phosphatase; Provisional
Probab=22.48 E-value=4.3e+02 Score=21.57 Aligned_cols=104 Identities=12% Similarity=0.014 Sum_probs=55.9
Q ss_pred HHHHHHHHHHCCCCeeeccCCcCC------------CcHHHHHHHHhcC-------CCCCCEEEEeccCCCCCCCCCCCC
Q 027845 40 MIALIHHAINSGITLLDTSDIYGP------------YTNEILVGKALKG-------GMRERVELATKFGISFADGGKIRG 100 (218)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dta~~Yg~------------g~se~~lg~~l~~-------~~r~~~~I~tK~~~~~~~~~~~~~ 100 (218)
..+.++.|++.|+..+=.+++... +.+..-+-+.++. ..+=++.+..-+...+
T Consensus 20 ~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~~-------- 91 (269)
T PRK07328 20 PEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYHP-------- 91 (269)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEecccC--------
Confidence 678899999999998755544221 0111112222222 1111334443333221
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCC-------------CCHHHHH----HHHHHHHHhCCcCEEe
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-------------IPIEVTI----GELKKLVEEGKIKYIG 155 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-------------~~~~~~~----~~l~~l~~~G~ir~iG 155 (218)
.-...+++.|++-..||+ +..+|+.+.. .+.++++ +.+.++.+.|.+--+|
T Consensus 92 ---~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlg 159 (269)
T PRK07328 92 ---GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIG 159 (269)
T ss_pred ---CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 234455556677666766 7788986421 1223333 3577778888887776
No 350
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=22.39 E-value=4.3e+02 Score=24.39 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHH
Q 027845 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 167 (218)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 167 (218)
+.........++.+.|+-||.++ |-. .-.+..++...+++++|.++|+. |.. .-+.+++++.
T Consensus 55 p~R~~~e~~~~I~~dL~WLGl~w-D~~----~~qSdr~~~y~~~a~~Li~~G~A-Y~C--~cs~eel~~~ 116 (523)
T PLN03233 55 PSKEKAEFEESIIEDLGKIEIKP-DSV----SFTSDYFEPIRCYAIILIEEGLA-YMD--DTPQEEMKKE 116 (523)
T ss_pred CCccchHHHHHHHHHHHHhCCCC-CCC----ccccccHHHHHHHHHHHHHcCCe-Eec--CCCHHHHHHH
Confidence 34556678889999999999975 421 12234567788999999999984 333 3456666555
No 351
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.23 E-value=3.3e+02 Score=20.07 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=58.3
Q ss_pred HHHHHHHHHHH-HCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHc
Q 027845 38 PDMIALIHHAI-NSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRL 116 (218)
Q Consensus 38 ~~~~~~l~~A~-~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 116 (218)
+..+.++..++ ++|+..+|+...-. .|+++..+.+. ..+-+-+|+-.+.. . ...+.+.+.|++-
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~---~e~~v~aa~~~-~adiVglS~l~~~~----------~-~~~~~~~~~l~~~ 79 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSP---QEEFIKAAIET-KADAILVSSLYGHG----------E-IDCKGLRQKCDEA 79 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCC---HHHHHHHHHHc-CCCEEEEecccccC----------H-HHHHHHHHHHHHC
Confidence 34667777776 45999999987665 88888877755 55556677766533 2 2345566667777
Q ss_pred CCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEe
Q 027845 117 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIG 155 (218)
Q Consensus 117 g~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iG 155 (218)
|...+ .+++-.. ...+.++.-+.-++|++.|--+-+|
T Consensus 80 gl~~~-~vivGG~-~vi~~~d~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 80 GLEGI-LLYVGGN-LVVGKQDFPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred CCCCC-EEEecCC-cCcChhhhHHHHHHHHHcCCCEEEC
Confidence 76432 2333331 1122222222334566777433344
No 352
>PLN02775 Probable dihydrodipicolinate reductase
Probab=22.12 E-value=4.8e+02 Score=21.98 Aligned_cols=68 Identities=7% Similarity=0.014 Sum_probs=46.5
Q ss_pred HHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCC-CeeEEcccCCc
Q 027845 111 ASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVH-PITAVQLEWSL 182 (218)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~n~ 182 (218)
..|.....++.|++++.. +.++-+.+.++...+.|+--=+|.+.|+.++++++.+.. -+.++--+|++
T Consensus 70 ~~l~~~~~~~~~~VvIDF----T~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 70 AVLSSVKAEYPNLIVVDY----TLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred HHHHHhhccCCCEEEEEC----CChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 444444344788777765 345567888888999998888899999999888776652 24444445553
No 353
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.07 E-value=3.4e+02 Score=23.46 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=53.6
Q ss_pred EeeecCCCC-----------CCHHHHHHHHHHHHHhC--Cc--CEE--ecCcccHHHHHHH---hcCCCeeEEcccCCcc
Q 027845 124 YYQHRVDTK-----------IPIEVTIGELKKLVEEG--KI--KYI--GLSEACAATIRRA---HAVHPITAVQLEWSLW 183 (218)
Q Consensus 124 ~~lh~~d~~-----------~~~~~~~~~l~~l~~~G--~i--r~i--Gvs~~~~~~l~~~---~~~~~~~~~q~~~n~~ 183 (218)
+.+|.+++. .+++++++++.+..+.+ .| +++ +--|.+.+.+.++ +...+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568877432 34578888888877654 22 233 3234455555554 4445667888999986
Q ss_pred ccc-----c---hhchHHHHHhcCCCeeeEehhhHH
Q 027845 184 SRD-----V---EAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 184 ~~~-----~---~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
... . ...+.+..+++| +.+....+.+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~g-i~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKH-VTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-ceEEEeCCCCc
Confidence 531 1 125567788899 88877766543
No 354
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=21.95 E-value=2.1e+02 Score=22.23 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEE--ecCc
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI--GLSE 158 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~i--Gvs~ 158 (218)
+....+.++.++- -++++++..-....-++-++.|.+++.+|++|++ |+.+
T Consensus 65 de~~f~~~L~e~s-------n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 65 DEQSFEDALLEAS-------NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred CHHHHHHHHHHHh-------CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 3455555554433 4666777655555566789999999999999976 5543
No 355
>PRK00038 rnpA ribonuclease P; Reviewed
Probab=21.85 E-value=3.2e+02 Score=19.79 Aligned_cols=63 Identities=8% Similarity=0.089 Sum_probs=40.8
Q ss_pred CCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEeeecCCCC-CCHHHH----HHHHHHHHH
Q 027845 78 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVT----IGELKKLVE 147 (218)
Q Consensus 78 ~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~~-~~~~~~----~~~l~~l~~ 147 (218)
+|=-+.|+-|+.... ..+..+++.+.++.+... ....|++++-.+... .+..++ .+.|++|..
T Consensus 50 ~RlGi~VsKKv~g~A-------V~RNRiKR~lRE~~R~~~~~l~~~D~VviaR~~~~~~~~~~l~~~~~~~~~~l~~ 119 (123)
T PRK00038 50 ARLGLVIAKRFAARA-------VTRNTLKRVIREAFRARRLALPAQDYVVRLHSKLTPASLTALKRSARAEVDAHFT 119 (123)
T ss_pred ceEEEEEecccCCCc-------hhHHHHHHHHHHHHHHhhccCCCCCEEEEECCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 566688888854333 457888888888887653 223599988877543 344554 566666654
No 356
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=21.83 E-value=2e+02 Score=25.36 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhhH
Q 027845 138 TIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSIIK 210 (218)
Q Consensus 138 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl~ 210 (218)
.-..+..|.+.|.--..|+.+-+-...+.+....-..+.+-+|++.......+.....++.+ +.|.+--||+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~-~vi~~~~~~g 350 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAAD-AVVAAGVAAA 350 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCC-EEEECCCccC
Confidence 45678889999999999999866555555545555677888999999876667788888888 7777666663
No 357
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=21.81 E-value=68 Score=19.14 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCCCeee
Q 027845 38 PDMIALIHHAINSGITLLD 56 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~D 56 (218)
+....+|-.|++.|.+.||
T Consensus 29 ~~sl~~Li~aL~~G~~~F~ 47 (47)
T PF14615_consen 29 DKSLPLLIDALQQGTDMFS 47 (47)
T ss_pred chhHHHHHHHHHhcccccC
Confidence 4578899999999999885
No 358
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=21.74 E-value=2.1e+02 Score=23.36 Aligned_cols=97 Identities=12% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHH--------hCCcCEEecCcccHHHHHHHhcCCCeeEEcc
Q 027845 107 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE--------EGKIKYIGLSEACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~--------~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (218)
+.++..|+-+| +|+|.+-+-|-......++.++..-++.+ =|..-.+-++.-..+++.+..+...++++.+
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEi 90 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEI 90 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEE
Q ss_pred cCCcccccchh--chHHHHHhcCCCeeeE
Q 027845 179 EWSLWSRDVEA--EIVPTCSACRSSKLKI 205 (218)
Q Consensus 179 ~~n~~~~~~~~--~l~~~~~~~g~i~i~~ 205 (218)
.=..+.-..++ .+++.++++| ..+..
T Consensus 91 S~G~~~i~~~~~~rlI~~~~~~g-~~v~~ 118 (237)
T TIGR03849 91 SDGSMEISLEERCNLIERAKDNG-FMVLS 118 (237)
T ss_pred cCCccCCCHHHHHHHHHHHHhCC-CeEec
No 359
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=21.73 E-value=5.3e+02 Score=22.30 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCC-cHHHHHHHHhcCCCC--CCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPY-TNEILVGKALKGGMR--ERVELATKFGISFADGGKIRGDPAYVRACCEAS 112 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g-~se~~lg~~l~~~~r--~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~s 112 (218)
+.++..+.++.+.+.|++.|=-...-+.- ..-+.+.+.++.+.. .++-| .+. ..+.+.+ +-
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I--ei~---------~lt~e~~-----~~ 167 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI--EVQ---------PLNEEEY-----KK 167 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc--ccc---------cCCHHHH-----HH
Confidence 67889999999999999977533211111 122345555554211 11111 111 1345555 56
Q ss_pred HHHcCCCccceEe----------eecCCCCCCHHHHHHHHHHHHHhCCc--CE---EecCcccHHHH
Q 027845 113 LKRLDIDCIDLYY----------QHRVDTKIPIEVTIGELKKLVEEGKI--KY---IGLSEACAATI 164 (218)
Q Consensus 113 L~~Lg~~~lDl~~----------lh~~d~~~~~~~~~~~l~~l~~~G~i--r~---iGvs~~~~~~l 164 (218)
|+..|++++-+.+ +|-.....++++.+++++.+++.|.- .. +|+..+..+.+
T Consensus 168 Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~ 234 (366)
T TIGR02351 168 LVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAF 234 (366)
T ss_pred HHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHH
Confidence 7888888766543 23223345788999999999999853 32 35555444443
No 360
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=21.71 E-value=1.7e+02 Score=25.69 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCc
Q 027845 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 158 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 158 (218)
.+...+.+++.-+.|+.+..++.++-......+..++.++|.+.... +..||.|+
T Consensus 12 ~~d~~~v~~e~~~~~~~~~~~~~~ifF~~~~~~~~~l~~~l~~~~pg--~~liGCST 66 (379)
T COG3287 12 GKDAESVIEEMARQLGSDRSDFVLIFFSPERDEHVQLASALKQAFPG--ICLIGCST 66 (379)
T ss_pred cCCHHHHHHHHHHhhCcCCCCeEEEEeccccccHHHHHHHHHhhCCC--CeEecccc
Confidence 34466677778889999999999988877666666788888877654 77788774
No 361
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.71 E-value=5e+02 Score=22.00 Aligned_cols=120 Identities=12% Similarity=-0.014 Sum_probs=61.6
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHH---------
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYV--------- 105 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i--------- 105 (218)
.+.++..+.++.+.+.|++.|-.............+-+.++.+.+....+ ++. ..++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i--~~~---------~~s~~ei~~~~~~~g~ 140 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHI--HIH---------SFSPVEIVYIAKKEGL 140 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc--CCC---------CCCHHHHHHHhccCCC
Confidence 57788889999999999988766432221112222333333311111011 111 0122221
Q ss_pred -HHHHHHHHHHcCCCccceE--e-e-----ecC-CCCCCHHHHHHHHHHHHHhCCcCE----EecCcccHHHHHH
Q 027845 106 -RACCEASLKRLDIDCIDLY--Y-Q-----HRV-DTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRR 166 (218)
Q Consensus 106 -~~~~~~sL~~Lg~~~lDl~--~-l-----h~~-d~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~ 166 (218)
.+..-+.|++.|+++++.. . + +.. ....+.++.+++++.+++.|.--. +|. ..+.+++.+
T Consensus 141 ~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 141 SLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred CHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 1444455677788777521 1 1 111 112367788999999999995432 454 455554333
No 362
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=21.63 E-value=6.2e+02 Score=23.06 Aligned_cols=25 Identities=4% Similarity=0.094 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccC
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSD 59 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~ 59 (218)
.+.++..++.+...+.|++.|+.+.
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4667788899998899999999764
No 363
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=21.61 E-value=3.7e+02 Score=23.57 Aligned_cols=76 Identities=7% Similarity=-0.103 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC-CCeeEEcccCCccccc-chhchHHHHHhcCCCeeeEehhhHH
Q 027845 136 EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCSACRSSKLKIWSIIKS 211 (218)
Q Consensus 136 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~g~i~i~~~spl~g 211 (218)
.++.+-++++...--|...=+...+.+.++++++. .+......+-||...- ..+.+.+.|+++|.+.+++=..+++
T Consensus 105 ~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 105 GGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp HHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred CcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 34666666544443443333333567777777765 5677888888887654 3458899999997467777777765
No 364
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.58 E-value=3.2e+02 Score=24.20 Aligned_cols=108 Identities=7% Similarity=0.058 Sum_probs=58.2
Q ss_pred CCcCCCcHHHHHHHHhcC----CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CCccceEeeecCCCCC
Q 027845 59 DIYGPYTNEILVGKALKG----GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD-IDCIDLYYQHRVDTKI 133 (218)
Q Consensus 59 ~~Yg~g~se~~lg~~l~~----~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~~~lDl~~lh~~d~~~ 133 (218)
..|| .|+.|-+++++ .+.+-++|.|-..+.. --+++..-+++.-++.- ...+.++.+|.|+...
T Consensus 61 ~VfG---g~~~L~~~i~~~~~~~~p~~I~V~ttc~~ei--------IGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g 129 (417)
T cd01966 61 TILG---GGENLEEALDTLAERAKPKVIGLLSTGLTET--------RGEDIAGALKQFRAEHPELADVPVVYVSTPDFEG 129 (417)
T ss_pred EEEC---CHHHHHHHHHHHHHhcCCCEEEEECCCcccc--------cccCHHHHHHHHHhhccccCCCeEEEecCCCCCC
Confidence 3466 56666677766 3455577777665332 23334444444333321 0136789999998764
Q ss_pred CH----HHHHHHHHH-H--------HHhCCcCEEecCcc---cHHHHHHHhcCCCeeEEc
Q 027845 134 PI----EVTIGELKK-L--------VEEGKIKYIGLSEA---CAATIRRAHAVHPITAVQ 177 (218)
Q Consensus 134 ~~----~~~~~~l~~-l--------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~q 177 (218)
.. +.++++|.+ + +..++|--||-++. +.++++++++...+.++-
T Consensus 130 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 130 SLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred cHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 43 334444432 2 12445667764443 445777777775554443
No 365
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=21.49 E-value=2.2e+02 Score=24.14 Aligned_cols=52 Identities=15% Similarity=-0.013 Sum_probs=34.6
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhCCcC------EEecCcccH---HHHHHHhcCCCeeEEcc
Q 027845 127 HRVDTKIPIEVTIGELKKLVEEGKIK------YIGLSEACA---ATIRRAHAVHPITAVQL 178 (218)
Q Consensus 127 h~~d~~~~~~~~~~~l~~l~~~G~ir------~iGvs~~~~---~~l~~~~~~~~~~~~q~ 178 (218)
++|.....++.+++.|+.+.+.+.-+ -+.--|++. +.+.++++...|+.+|+
T Consensus 149 nRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~vel 209 (296)
T COG0731 149 NRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERINPDFVEL 209 (296)
T ss_pred cCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEE
Confidence 44555567889999999999963222 222224444 56777777778888877
No 366
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=21.41 E-value=1.2e+02 Score=27.03 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=46.4
Q ss_pred CCcccCcceecccccCCC-CCCCCChHH----HHHHHHHHHHCCCC--eeeccCCcCCC----cHHHHHHHHhcC-----
Q 027845 13 QGLEVSAQGLGCMAMSCL-YGPPEPEPD----MIALIHHAINSGIT--LLDTSDIYGPY----TNEILVGKALKG----- 76 (218)
Q Consensus 13 ~g~~vs~lglG~~~~~~~-~~~~~~~~~----~~~~l~~A~~~Gi~--~~Dta~~Yg~g----~se~~lg~~l~~----- 76 (218)
-|++..++.||.-.+|-. |.. .+.++ ++++++..+++|++ |+||+-.-.+- ..|.+.-++.+-
T Consensus 78 ~g~~~~~iiLGGDHLGP~~w~~-lpaeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE 156 (424)
T PF08013_consen 78 VGFPRDRIILGGDHLGPNPWQH-LPAEEAMAKAKELIRAYVEAGFTKIHLDCSMDCAGDPKPLPDETVAERAARLCEVAE 156 (424)
T ss_dssp CT--GGGEEEEEEEESSCCCTT-SBHHHHHHHHHHHHHHHHCTT--EEEE---C--CTS-SC--HHHHHHHHHHHHHHHH
T ss_pred cCCchhhEEecCCCCCcccccC-CCHHHHHHHHHHHHHHHHHcCCceEeecCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 467777889998887643 332 24433 67888888999998 78988654321 123333333321
Q ss_pred -C------CCCCEEEEeccCCCCCC----CCCCCCCHHHHHHHHHHHH---HHcCC
Q 027845 77 -G------MRERVELATKFGISFAD----GGKIRGDPAYVRACCEASL---KRLDI 118 (218)
Q Consensus 77 -~------~r~~~~I~tK~~~~~~~----~~~~~~~~~~i~~~~~~sL---~~Lg~ 118 (218)
. ++--++|.|-+...... +...-.+++..++.++.-. .+.|+
T Consensus 157 ~~~~~~~~~~pvYvIGTEVPvPGGa~e~~~~l~vTs~ea~~~Ti~~h~~aF~~~GL 212 (424)
T PF08013_consen 157 EAAKRRGGPPPVYVIGTEVPVPGGAQEALDGLAVTSPEAAEATIETHRKAFEAAGL 212 (424)
T ss_dssp CCS-HHHHHH-EEEEE-SS-----------------HHHHHHHHHHHHHHHHCCT-
T ss_pred HHHHhcCCCCceEEeCCccCCCCcccccccCCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 1 23447788887432211 0112345666666555444 44454
No 367
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=21.39 E-value=5.5e+02 Score=22.40 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC
Q 027845 138 TIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 170 (218)
Q Consensus 138 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 170 (218)
..+.++.|++.|.+-++|=|+-+.++..++++.
T Consensus 179 ~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 179 HFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred hHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 567788999999999999999999999999877
No 368
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=21.37 E-value=1.5e+02 Score=24.97 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCc
Q 027845 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 151 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~i 151 (218)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 556788889999999986 5753221 1111234578899999999998
No 369
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=21.36 E-value=1.7e+02 Score=22.66 Aligned_cols=36 Identities=8% Similarity=0.116 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVG 71 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg 71 (218)
+++...++++...+.|++.+|+=.-|.-..-++.+|
T Consensus 11 ~~~~l~~A~~~~r~~G~~~~d~ytPfPvhgld~alg 46 (173)
T PF11821_consen 11 DPEALLHAARKLRDAGYRIWDVYTPFPVHGLDEALG 46 (173)
T ss_pred CHHHHHHHHHHHHHcCCceeEEeCCCcCcCHHHHhC
Confidence 667789999999999999999776666444555555
No 370
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=21.16 E-value=4.3e+02 Score=25.14 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHh--CCcCEEecCcccHHHHHHHhcCCCeeEEcc
Q 027845 101 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE--GKIKYIGLSEACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 178 (218)
+.+.+++-++....+--..+.-+|+|+..+... .+..++|-+..++ +.++.|.+++.....+..+.. .|.++
T Consensus 100 ~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S----RC~~~ 173 (647)
T PRK07994 100 KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS----RCLQF 173 (647)
T ss_pred CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--HHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh----hheEe
Confidence 345555444443322222356788888775432 3578888888888 899999998754433333333 38888
Q ss_pred cCCcccccc-hhchHHHHHhcC
Q 027845 179 EWSLWSRDV-EAEIVPTCSACR 199 (218)
Q Consensus 179 ~~n~~~~~~-~~~l~~~~~~~g 199 (218)
.+..+.... ...+...|++.|
T Consensus 174 ~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 174 HLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred eCCCCCHHHHHHHHHHHHHHcC
Confidence 888887752 224444455555
No 371
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=21.12 E-value=5e+02 Score=21.81 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=40.6
Q ss_pred HHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhc
Q 027845 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA 169 (218)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 169 (218)
.+.+...+.+.=|+++.-...... .+++.+++..++.| ++-|++++.....+.+..+
T Consensus 117 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~aD 173 (296)
T PRK12570 117 AQDLKAIGLTADDVVVGIAASGRT--PYVIGALEYAKQIG-ATTIALSCNPDSPIAKIAD 173 (296)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhCC
Confidence 344555665566998887654433 46999999999998 6779999877666666543
No 372
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=21.11 E-value=2.6e+02 Score=21.68 Aligned_cols=71 Identities=15% Similarity=0.054 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhCCcCEEecCc-ccHHHHHHHhcCCC---eeEE-------cc-----cCCcccccchhchHHHHHhc
Q 027845 135 IEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHP---ITAV-------QL-----EWSLWSRDVEAEIVPTCSAC 198 (218)
Q Consensus 135 ~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~---~~~~-------q~-----~~n~~~~~~~~~l~~~~~~~ 198 (218)
.+++.++|++|+++|. .+++++ =+...+..++...+ +.+. .. ..+.+.......++++|+++
T Consensus 17 ~~~~~~al~~l~~~g~--~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~~~ 94 (254)
T PF08282_consen 17 SPETIEALKELQEKGI--KLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLKEH 94 (254)
T ss_dssp CHHHHHHHHHHHHTTC--EEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhhcccce--EEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhhhc
Confidence 3689999999999998 555554 23333444433321 1111 11 11223333345889999999
Q ss_pred CCCeeeEehh
Q 027845 199 RSSKLKIWSI 208 (218)
Q Consensus 199 g~i~i~~~sp 208 (218)
+ +.+..+.+
T Consensus 95 ~-~~~~~~~~ 103 (254)
T PF08282_consen 95 N-ISFFFYTD 103 (254)
T ss_dssp T-CEEEEEES
T ss_pred c-cccccccc
Confidence 9 88877764
No 373
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=21.10 E-value=3.2e+02 Score=25.88 Aligned_cols=47 Identities=23% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC
Q 027845 103 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 152 (218)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir 152 (218)
+...+.+++.+++||++ .|.+. +.......+.+.+.+.+|.++|.|-
T Consensus 71 ~~~~~~~~~~~~~l~i~-~d~f~--rtt~~~h~~~v~~~~~~L~~~G~iy 117 (673)
T PRK00133 71 ARYHAEHKRDFAGFGIS-FDNYG--STHSEENRELAQEIYLKLKENGYIY 117 (673)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCc--cCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 45677789999999987 46422 1111123457888999999999984
No 374
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=21.00 E-value=70 Score=21.61 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhCCcCEEecCcc
Q 027845 136 EVTIGELKKLVEEGKIKYIGLSEA 159 (218)
Q Consensus 136 ~~~~~~l~~l~~~G~ir~iGvs~~ 159 (218)
+...++|..|+++|.|..+-+...
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 678899999999999988877654
No 375
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.71 E-value=2e+02 Score=21.69 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHCCCCeeeccCCcC
Q 027845 37 EPDMIALIHHAINSGITLLDTSDIYG 62 (218)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg 62 (218)
-+++.+..+.|.+.|...+.....|.
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~ 89 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIG 89 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHH
Confidence 46688999999999999999765543
No 376
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.71 E-value=4.7e+02 Score=21.34 Aligned_cols=95 Identities=7% Similarity=0.030 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcC---CCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 027845 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKG---GMRERVELATKFGISFADGGKIRGDPAYVRACCEASLK 114 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~---~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (218)
+.+.+.++.|.+.|+... ....+....+.+.+-+..+. ..-+.+.|.--+|.. .|..+.+-++...+
T Consensus 114 ~~~~~~i~~a~~~G~~v~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~---------~P~~v~~lv~~l~~ 183 (268)
T cd07940 114 ERAVEAVEYAKSHGLDVE-FSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYL---------TPEEFGELIKKLKE 183 (268)
T ss_pred HHHHHHHHHHHHcCCeEE-EeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC---------CHHHHHHHHHHHHH
Confidence 446788889999997643 22223322345554444433 456778888877754 48889988888888
Q ss_pred HcCCCccceEeeecCCCCC-CHHHHHHHHH
Q 027845 115 RLDIDCIDLYYQHRVDTKI-PIEVTIGELK 143 (218)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~-~~~~~~~~l~ 143 (218)
.++--.+ -+-+|..+... ....++.+++
T Consensus 184 ~~~~~~i-~l~~H~Hn~~GlA~An~laAi~ 212 (268)
T cd07940 184 NVPNIKV-PISVHCHNDLGLAVANSLAAVE 212 (268)
T ss_pred hCCCCce-eEEEEecCCcchHHHHHHHHHH
Confidence 7752001 24667765432 2334444443
No 377
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=20.70 E-value=7.2e+02 Score=23.45 Aligned_cols=63 Identities=8% Similarity=0.097 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccc-eEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHh
Q 027845 98 IRGDPAYVRACCEASLKRLDIDCID-LYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 168 (218)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lD-l~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 168 (218)
+.........++.+.|+-||.++=. .++ .+..++...+++++|+++|+ +. +|..+.+++++..
T Consensus 96 p~R~~~e~~d~IleDL~WLGl~wDe~~~~-----QSdr~d~y~e~a~~Li~~G~--AY-~c~cs~eei~~~r 159 (601)
T PTZ00402 96 PSKEKEHFEQAILDDLATLGVSWDVGPTY-----SSDYMDLMYEKAEELIKKGL--AY-CDKTPREEMQKCR 159 (601)
T ss_pred CcccCHHHHHHHHHHHHHCCCCCCCceee-----ccccHHHHHHHHHHHHHcCC--EE-EecCCHHHHHHHH
Confidence 4445667888999999999986411 111 22346678899999999999 45 6777778886653
No 378
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=20.48 E-value=2.6e+02 Score=19.59 Aligned_cols=50 Identities=6% Similarity=-0.142 Sum_probs=25.6
Q ss_pred ccHHHHHHHhcCCCeeEEcccCCcccccchhchHHHHHhcCCCeeeEehhh
Q 027845 159 ACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCSACRSSKLKIWSII 209 (218)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g~i~i~~~spl 209 (218)
-+++.+..++...+|+++-+-----.+...+++.++++++| +++..+..=
T Consensus 39 l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~g-I~vE~m~T~ 88 (109)
T cd00248 39 LDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAG-IGVEVMSTG 88 (109)
T ss_pred CCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcC-CeEEEeCcH
Confidence 34444444443322333333222212222257888888888 888776554
No 379
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=20.44 E-value=4.7e+02 Score=21.25 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHCCCCeeeccCCcCCCcHHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 36 PEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
+++...+.+..|++.|++.+-....+ +++.+-+......+-.++++.-++ ....-+.+-++...+.
T Consensus 69 ~p~~~~~~~~~al~~G~~vvigttG~----s~~~~~~l~~aa~~~~v~~s~n~s----------~g~~~~~~l~~~aa~~ 134 (257)
T PRK00048 69 TPEATLENLEFALEHGKPLVIGTTGF----TEEQLAELEEAAKKIPVVIAPNFS----------IGVNLLMKLAEKAAKY 134 (257)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC----CHHHHHHHHHHhcCCCEEEECcch----------HHHHHHHHHHHHHHHh
Confidence 44557899999999999998543333 333222211111344455555544 3355667777777788
Q ss_pred cCCCccceEeeecCCCCCCHHHHHHHHHHHHHh
Q 027845 116 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 148 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~ 148 (218)
|+---+++.-.|.......++++.-.|.+...+
T Consensus 135 l~~~d~ei~E~HH~~K~DaPSGTA~~l~~~i~~ 167 (257)
T PRK00048 135 LGDYDIEIIEAHHRHKVDAPSGTALKLAEAIAE 167 (257)
T ss_pred cCCCCEEEEEccCCCCCCCCCHHHHHHHHHHHH
Confidence 863346777888775444445555444444433
No 380
>COG2412 Uncharacterized conserved protein [Function unknown]
Probab=20.43 E-value=2.4e+02 Score=19.78 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 027845 66 NEILVGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASL 113 (218)
Q Consensus 66 se~~lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (218)
.|.++|+.++. .--.+.|+-++... ...+.+.+.++++++-
T Consensus 21 DedvlGk~fre-g~~~i~VsesFYgg------e~v~~d~~~~~l~~At 61 (101)
T COG2412 21 DEDLLGKTFRE-GGLKIEVSESFYGG------ELVEEDEAIKALEEAT 61 (101)
T ss_pred cHhHhhhHhhc-CCeEEEEeccccCC------cccCHHHHHHHHHHhH
Confidence 57888888876 22334444444322 2356777777776553
No 381
>PLN02229 alpha-galactosidase
Probab=20.33 E-value=1.2e+02 Score=27.10 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=31.3
Q ss_pred cccCcceecccccCCCCCCCCChHHHHHHHHHH-----HHCCCCeeeccC
Q 027845 15 LEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHA-----INSGITLLDTSD 59 (218)
Q Consensus 15 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A-----~~~Gi~~~Dta~ 59 (218)
...|++|+-+|.. ++...+++..+++.+.. .+.|+++|-.-.
T Consensus 60 a~tPpmGWnSWn~---~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDD 106 (427)
T PLN02229 60 ARTPQMGWNSWNF---FACNINETVIKETADALVSTGLADLGYIHVNIDD 106 (427)
T ss_pred cCCCCceEEchhh---hCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcC
Confidence 4578999999965 56667888888887774 678999884433
No 382
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=20.31 E-value=5.6e+02 Score=22.06 Aligned_cols=74 Identities=12% Similarity=-0.056 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEeeecCCCC-CCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCC
Q 027845 98 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHP 172 (218)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 172 (218)
.+++.+.-.+-.+-+.+..+++.+-|=.+...... .++.+++++.++|.++|..-. =+|+-++...+++.+..+
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~g~ 219 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDAGA 219 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhcCC
Confidence 45778888888888888889988887776655444 357899999999999998652 455567777777766644
No 383
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=20.28 E-value=5.7e+02 Score=22.15 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=50.1
Q ss_pred ceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcC-CCeeEEcccCCccccc-chhchHHHHHhcC
Q 027845 122 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCSACR 199 (218)
Q Consensus 122 Dl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~g 199 (218)
|-+++..|.. ..+...+..+...+.+.-.-+...+.+.++++++. .+..++..+-|+.-.- ..+++.+.|+++|
T Consensus 91 D~Vl~~~p~y----~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDCY----GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5555555432 23444444544555444444445578888887754 4566666677765543 3358999999999
Q ss_pred CCeeeEehhh
Q 027845 200 SSKLKIWSII 209 (218)
Q Consensus 200 ~i~i~~~spl 209 (218)
+-++.=..+
T Consensus 167 -~~vvvD~a~ 175 (382)
T TIGR02080 167 -AVVVVDNTF 175 (382)
T ss_pred -CEEEEECCC
Confidence 777665554
No 384
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=20.24 E-value=1.7e+02 Score=26.46 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcC
Q 027845 102 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 152 (218)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir 152 (218)
.+...+.+++.|++||++ .|.+. ........+.+.+.+.+|+++|.+-
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY 116 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIY 116 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 556778899999999997 67542 1111123567889999999999974
No 385
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.19 E-value=4.9e+02 Score=21.27 Aligned_cols=26 Identities=4% Similarity=0.116 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHHCCCCeeeccCC
Q 027845 35 EPEPDMIALIHHAINSGITLLDTSDI 60 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~Dta~~ 60 (218)
.+.++..++++...+.|++.|+....
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~ 42 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFP 42 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 46678999999999999999998743
No 386
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=20.17 E-value=82 Score=26.33 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=36.1
Q ss_pred HHHHHHcCCCccceEeeecCCCCCCHHHHHHHHHHHHHhCCcCEEecCcccHHHHHHHhcCCCeeEEcccCCcccccchh
Q 027845 110 EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEA 189 (218)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~ 189 (218)
...|+.+|++.. ++..|.. .-.+....|..+.++|+ .|++-+ +..-| .+-++. -
T Consensus 43 ~~LL~~~~I~~~-~is~h~h----ne~~~~~~li~~l~~g~--~valVS----------DAG~P-------~ISDPG--~ 96 (275)
T COG0313 43 RKLLSHLGIKTP-LISYHEH----NEKEKLPKLIPLLKKGK--SVALVS----------DAGTP-------LISDPG--Y 96 (275)
T ss_pred HHHHHHhCCCCc-eecccCC----cHHHHHHHHHHHHhcCC--eEEEEe----------cCCCC-------cccCcc--H
Confidence 345566666543 4444432 23345666677777774 333221 00111 022333 5
Q ss_pred chHHHHHhcCCCeee
Q 027845 190 EIVPTCSACRSSKLK 204 (218)
Q Consensus 190 ~l~~~~~~~g~i~i~ 204 (218)
.+++.|+++| +.|.
T Consensus 97 ~LV~~a~~~g-i~V~ 110 (275)
T COG0313 97 ELVRAAREAG-IRVV 110 (275)
T ss_pred HHHHHHHHcC-CcEE
Confidence 8999999999 7773
No 387
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.17 E-value=6.3e+02 Score=22.60 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=61.6
Q ss_pred CChHHHHHHHHHHHHCCCCee----eccCCcCCCcHHHHHHHHhcC---CC-CCCEEEEeccCCCCCCCCCCCCCHHHHH
Q 027845 35 EPEPDMIALIHHAINSGITLL----DTSDIYGPYTNEILVGKALKG---GM-RERVELATKFGISFADGGKIRGDPAYVR 106 (218)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~----Dta~~Yg~g~se~~lg~~l~~---~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~ 106 (218)
.+.++..+-++...+.|++.| |+-..|+.+. + -+.+.++. .. -..+.+++ .. |..+.
T Consensus 183 r~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~-~-~l~~Ll~~l~~~~~~~~ir~~~----~~---------p~~~~ 247 (449)
T PRK14332 183 RDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQS-T-DFAGLIQMLLDETTIERIRFTS----PH---------PKDFP 247 (449)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCc-c-cHHHHHHHHhcCCCcceEEEEC----CC---------cccCC
Confidence 466777888888889998876 3444676421 1 13333322 11 11222221 11 22233
Q ss_pred HHHHHHHHHcC--CCccceEeeec-------CCCCCCHHHHHHHHHHHHHhC-Cc--C---EEecCcccHHHHHHHhcC
Q 027845 107 ACCEASLKRLD--IDCIDLYYQHR-------VDTKIPIEVTIGELKKLVEEG-KI--K---YIGLSEACAATIRRAHAV 170 (218)
Q Consensus 107 ~~~~~sL~~Lg--~~~lDl~~lh~-------~d~~~~~~~~~~~l~~l~~~G-~i--r---~iGvs~~~~~~l~~~~~~ 170 (218)
..+-+.+++.+ ..++++=+=|. .......++..++++.+++.+ .+ + =+|+-+.+.+.+++.++.
T Consensus 248 ~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~ 326 (449)
T PRK14332 248 DHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAV 326 (449)
T ss_pred HHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHH
Confidence 33444455544 34444432222 123345677888888888762 12 1 247777777766665544
No 388
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=20.16 E-value=5.1e+02 Score=21.55 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHCCCCeeeccCCcCCCcHHHH--HHHHhcCCCCCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 027845 38 PDMIALIHHAINSGITLLDTSDIYGPYTNEIL--VGKALKGGMRERVELATKFGISFADGGKIRGDPAYVRACCEASLKR 115 (218)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~g~se~~--lg~~l~~~~r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (218)
+...+.++.-.+.+..|+..+..-+.+..+.. +...+++ +-.+-....+... +.....+...+... ..
T Consensus 16 ~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~--~~g~~~i~Hltcr-------~~~~~~l~~~L~~~-~~ 85 (281)
T TIGR00677 16 QNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQN--VVGVETCMHLTCT-------NMPIEMIDDALERA-YS 85 (281)
T ss_pred HHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHH--hcCCCeeEEeccC-------CCCHHHHHHHHHHH-HH
Confidence 34566666667788899988854332222332 2333332 1122222233222 24455666666555 77
Q ss_pred cCCCccceEeeecCCC---------CCCHHHHHHHHHHHHHh-CCcCEEecCccc--------HH-HHHHHhcC----CC
Q 027845 116 LDIDCIDLYYQHRVDT---------KIPIEVTIGELKKLVEE-GKIKYIGLSEAC--------AA-TIRRAHAV----HP 172 (218)
Q Consensus 116 Lg~~~lDl~~lh~~d~---------~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~--------~~-~l~~~~~~----~~ 172 (218)
+|++ +++.+-...+ ...++.+.+-++.+++. |.--.||+..++ .+ .+..+.+. ..
T Consensus 86 ~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~ 163 (281)
T TIGR00677 86 NGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAGAD 163 (281)
T ss_pred CCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 7865 3444433211 11233355555555554 443588988763 21 23444333 45
Q ss_pred eeEEcccCCcccccchhchHHHHHhcC
Q 027845 173 ITAVQLEWSLWSRDVEAEIVPTCSACR 199 (218)
Q Consensus 173 ~~~~q~~~n~~~~~~~~~l~~~~~~~g 199 (218)
+-+-|.-|++ +.-..+++.|++.|
T Consensus 164 f~iTQ~~Fd~---~~~~~f~~~~~~~g 187 (281)
T TIGR00677 164 FIITQLFYDV---DNFLKFVNDCRAIG 187 (281)
T ss_pred EeeccceecH---HHHHHHHHHHHHcC
Confidence 7888887665 33247888899887
No 389
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=20.13 E-value=6.4e+02 Score=22.66 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=62.2
Q ss_pred eccCCcCCCcHHHHHHHHhcC----CC-CCCEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC----ccceEee
Q 027845 56 DTSDIYGPYTNEILVGKALKG----GM-RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID----CIDLYYQ 126 (218)
Q Consensus 56 Dta~~Yg~g~se~~lg~~l~~----~~-r~~~~I~tK~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~----~lDl~~l 126 (218)
+..-.|| .|+.|-+++++ .+ .+-++|.|-.... .--+++..-+++.-+++.-+ .+.++.+
T Consensus 66 E~dvVfG---G~~kL~~aI~~~~~~~~~p~~I~V~ttC~~e--------iIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v 134 (457)
T TIGR02932 66 EESAVFG---GAKRIEEGVLTLARRYPNLRVIPIITTCSTE--------TIGDDIEGSIRKVNRALKKEFPDRKIKLVPV 134 (457)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhCCCCCEEEEECCchHH--------hhcCCHHHHHHHHHhhhhhhcCCCCCeEEEe
Confidence 3334577 67777788877 22 3446677765432 22334444444432222111 3688999
Q ss_pred ecCCCCCCH----HHHHHHHHHHH-H-----hCCcCEEecCc--ccHHHHHHHhcCCCeeEEcc
Q 027845 127 HRVDTKIPI----EVTIGELKKLV-E-----EGKIKYIGLSE--ACAATIRRAHAVHPITAVQL 178 (218)
Q Consensus 127 h~~d~~~~~----~~~~~~l~~l~-~-----~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~q~ 178 (218)
+.|+..... +.+++++-+.. + +++|--||-.+ -+.++++++++...+.++-+
T Consensus 135 ~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 135 HTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred eCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 999877543 34555444332 2 35566665333 35568888888866555543
Done!