Query 027848
Match_columns 218
No_of_seqs 105 out of 484
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 18:16:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027848.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2215-2219//hhsearch_pdb/027848hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 1.0 1 1 182.5 6.0 103 32-135 2-105 (107)
2 2cxy_A BAF250B subunit, HBAF25 1.0 1 1 172.7 10.5 102 31-133 19-121 (125)
3 2eqy_A RBP2 like, jumonji, at 1.0 1 1 172.0 10.0 103 25-129 5-107 (122)
4 2rq5_A Protein jumonji; develo 1.0 1 1 171.6 9.4 90 33-122 12-102 (121)
5 2jrz_A Histone demethylase jar 1.0 1 1 170.4 10.1 99 28-128 6-104 (117)
6 1c20_A DEAD ringer protein; DN 1.0 1 1 169.5 9.1 92 31-122 20-112 (128)
7 2kk0_A AT-rich interactive dom 1.0 1 1 169.1 8.7 90 32-121 33-123 (145)
8 2lm1_A Lysine-specific demethy 1.0 1 1 167.4 7.9 95 26-121 8-102 (107)
9 2jxj_A Histone demethylase jar 1.0 1 1 166.6 7.6 91 30-121 4-94 (96)
10 1kkx_A Transcription regulator 1.0 1 1 166.2 8.4 93 25-122 10-103 (123)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=1.00 E-value=1 Score=182.45 Aligned_cols=103 Identities=27% Similarity=0.457 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 784689999999996319988-8871499450444369998732861220236776888866178999873789999999
Q 027848 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (218)
Q Consensus 32 ~er~~Fl~~L~~F~~~rG~pl-k~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas~~LK~~Y 110 (218)
++++.|+++|.+||+.+|+|+ ++|.++|++||||+||.+|+++|||++||++++|.+|++.||+++++++++++||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEECCEEECHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 25999999999999984998876960899851099999999881589871354719999998399978785999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9824887855652015999999997
Q 027848 111 LTLLYHYEQVHFFKMQGPPCVPSGK 135 (218)
Q Consensus 111 ~kyLlpYE~~~~~ge~d~~~~p~~~ 135 (218)
++||++||+ +..++++++.||+.|
T Consensus 82 ~k~L~~yE~-~~~~~~~~~~p~~~~ 105 (107)
T 1ig6_A 82 ERLILPYER-FIKGEEDKPLPPIKP 105 (107)
T ss_dssp HHHTTTTHH-HHHHHTSSSSCTTCS
T ss_pred HHHHHHHHH-HHCCCCCCCCCCCCC
T ss_conf 999899999-980799999999999
No 2
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=1.00 E-value=1 Score=172.73 Aligned_cols=102 Identities=30% Similarity=0.461 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 6784689999999996319988-887149945044436999873286122023677688886617899987378999999
Q 027848 31 SKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKH 109 (218)
Q Consensus 31 ~~er~~Fl~~L~~F~~~rG~pl-k~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas~~LK~~ 109 (218)
..+++.|+++|.+||+.+|+|+ ++|.++|++||||+||.+|+++|||++||++++|.+|++.+|++. ++++++.||++
T Consensus 19 ~~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~ 97 (125)
T 2cxy_A 19 EPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQ 97 (125)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEECHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCC-CCCHHHHHHHH
T ss_conf 61699999999999998499877780499996229999999998378998645274899999859998-88299999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 998248878556520159999999
Q 027848 110 YLTLLYHYEQVHFFKMQGPPCVPS 133 (218)
Q Consensus 110 Y~kyLlpYE~~~~~ge~d~~~~p~ 133 (218)
|++||++||+++..|+++++.-++
T Consensus 98 Y~k~L~~yE~~~~~g~~~p~~i~~ 121 (125)
T 2cxy_A 98 YIQYLFAFECKIERGEEPPPEVFS 121 (125)
T ss_dssp HHHHTHHHHHHHHHCCCCCCSCC-
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHC
T ss_conf 999989999999828999766732
No 3
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=171.97 Aligned_cols=103 Identities=24% Similarity=0.403 Sum_probs=91.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHH
Q ss_conf 99875567846899999999963199888871499450444369998732861220236776888866178999873789
Q 027848 25 SSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASF 104 (218)
Q Consensus 25 ~~~e~~~~er~~Fl~~L~~F~~~rG~plk~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas~ 104 (218)
.+.++.+++++.|+++|.+||+.+|+|+++|.++|++||||+||.+|+++|||++||++++|.+|++.||++++ ++++.
T Consensus 5 nele~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~-~~~~~ 83 (122)
T 2eqy_A 5 SSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPG-KAVGS 83 (122)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSS-SHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCC-CCHHH
T ss_conf 32555303899999999999998199898970999852399999999983587987377837999998399988-86999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999824887855652015999
Q 027848 105 VLRKHYLTLLYHYEQVHFFKMQGPP 129 (218)
Q Consensus 105 ~LK~~Y~kyLlpYE~~~~~ge~d~~ 129 (218)
+||++|++||+|||++. .+.....
T Consensus 84 ~Lr~~Y~k~L~~yE~~~-~~~~~~~ 107 (122)
T 2eqy_A 84 HIRGHYERILNPYNLFL-SGDSLRC 107 (122)
T ss_dssp HHHHHHHHTHHHHHHHH-HCCTTCC
T ss_pred HHHHHHHHHHHHHHHHH-HCCCCCC
T ss_conf 99999999949999998-1388533
No 4
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=171.62 Aligned_cols=90 Identities=22% Similarity=0.418 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 84689999999996319988-88714994504443699987328612202367768888661789998737899999999
Q 027848 33 DPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYL 111 (218)
Q Consensus 33 er~~Fl~~L~~F~~~rG~pl-k~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas~~LK~~Y~ 111 (218)
....|+++|.+||+.+|+|+ ++|.++|++||||+||..|+++|||++||++++|.+|++.||+|+++++++++||++|+
T Consensus 12 ~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~ 91 (121)
T 2rq5_A 12 PNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYC 91 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 80999999999999849989878718998464999999999757588843657379999984999776759999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 82488785565
Q 027848 112 TLLYHYEQVHF 122 (218)
Q Consensus 112 kyLlpYE~~~~ 122 (218)
+||++||++..
T Consensus 92 k~L~~YE~~~~ 102 (121)
T 2rq5_A 92 QYLLSYDSLSP 102 (121)
T ss_dssp TTHHHHHHCCH
T ss_pred HHHHHHHCCCH
T ss_conf 98399878599
No 5
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=1.00 E-value=1 Score=170.42 Aligned_cols=99 Identities=25% Similarity=0.492 Sum_probs=90.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 75567846899999999963199888871499450444369998732861220236776888866178999873789999
Q 027848 28 EDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLR 107 (218)
Q Consensus 28 e~~~~er~~Fl~~L~~F~~~rG~plk~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas~~LK 107 (218)
++.++++..|+++|.+||+.+|+|+++|.++|++||||+||.+|+++|||++||++++|.+|++.||+|++ +++++.||
T Consensus 6 e~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~Lk 84 (117)
T 2jrz_A 6 EAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLR 84 (117)
T ss_dssp HTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCEEECHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCC-CCHHHHHH
T ss_conf 32056999999999999998299898870899861399999999984588873564738999998499998-86999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999982488785565201599
Q 027848 108 KHYLTLLYHYEQVHFFKMQGP 128 (218)
Q Consensus 108 ~~Y~kyLlpYE~~~~~ge~d~ 128 (218)
++|++||+|||++.. +....
T Consensus 85 ~~Y~k~L~~yE~~~~-~~~~~ 104 (117)
T 2jrz_A 85 SHYERIVYPYEMYQS-GANLV 104 (117)
T ss_dssp HHHHHTTHHHHHHHH-HHHCC
T ss_pred HHHHHHHHHHHHHHH-CCCCC
T ss_conf 999999799999984-58864
No 6
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=1.00 E-value=1 Score=169.47 Aligned_cols=92 Identities=33% Similarity=0.507 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 6784689999999996319988-887149945044436999873286122023677688886617899987378999999
Q 027848 31 SKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKH 109 (218)
Q Consensus 31 ~~er~~Fl~~L~~F~~~rG~pl-k~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas~~LK~~ 109 (218)
.++++.|+++|.+||+.+|+|+ ++|.++|++||||+||.+|+++|||++||++++|.+|++.||+++++++++++||++
T Consensus 20 ~~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~ 99 (128)
T 1c20_A 20 DPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ 99 (128)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEECHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 35899999999999998299975451289996139999999987067887175375899999848998877599999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9982488785565
Q 027848 110 YLTLLYHYEQVHF 122 (218)
Q Consensus 110 Y~kyLlpYE~~~~ 122 (218)
|++||+|||++..
T Consensus 100 Y~k~L~~yE~~~~ 112 (128)
T 1c20_A 100 YMKYLYPYECEKK 112 (128)
T ss_dssp HHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999899999987
No 7
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=169.05 Aligned_cols=90 Identities=37% Similarity=0.605 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 784689999999996319988-8871499450444369998732861220236776888866178999873789999999
Q 027848 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (218)
Q Consensus 32 ~er~~Fl~~L~~F~~~rG~pl-k~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas~~LK~~Y 110 (218)
.+++.|+++|.+||+.+|+|+ ++|.++|++||||+||.+|+++|||++||++++|.+|++.||++++++++++.||++|
T Consensus 33 ~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y 112 (145)
T 2kk0_A 33 PKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQY 112 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEECCEEECHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 46899999999999984998754545999971199999999871788870565748999998399977673899999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 98248878556
Q 027848 111 LTLLYHYEQVH 121 (218)
Q Consensus 111 ~kyLlpYE~~~ 121 (218)
++||+|||+..
T Consensus 113 ~k~L~~yE~~~ 123 (145)
T 2kk0_A 113 MKYLYPYECEK 123 (145)
T ss_dssp HHHSSHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99989999997
No 8
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=167.40 Aligned_cols=95 Identities=25% Similarity=0.477 Sum_probs=88.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHH
Q ss_conf 98755678468999999999631998888714994504443699987328612202367768888661789998737899
Q 027848 26 SHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFV 105 (218)
Q Consensus 26 ~~e~~~~er~~Fl~~L~~F~~~rG~plk~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas~~ 105 (218)
+.+..+++++.|+++|.+||+.+|+|++.|.++|++||||+||.+|+++|||++||++++|.+|++.+|+|++ ++++..
T Consensus 8 el~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~ 86 (107)
T 2lm1_A 8 ELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGAT 86 (107)
T ss_dssp SSCCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCEEECHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCC-CCHHHH
T ss_conf 2368734799999999999998299998982999862299999999982489870556857999998599999-869999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999998248878556
Q 027848 106 LRKHYLTLLYHYEQVH 121 (218)
Q Consensus 106 LK~~Y~kyLlpYE~~~ 121 (218)
+|++|++||+|||++.
T Consensus 87 lk~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 87 LKAHYERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999969999998
No 9
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=166.61 Aligned_cols=91 Identities=35% Similarity=0.618 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 56784689999999996319988887149945044436999873286122023677688886617899987378999999
Q 027848 30 VSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKH 109 (218)
Q Consensus 30 ~~~er~~Fl~~L~~F~~~rG~plk~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas~~LK~~ 109 (218)
.+++++.|+++|.+||+++|+|+++|.++|++||||+||.+|+++|||++||++++|.+|++.+|+++++ +++..||++
T Consensus 4 ~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~~ 82 (96)
T 2jxj_A 4 GSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKSH 82 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCCC-CHHHHHHHH
T ss_conf 2279999999999999984998988819998413999999999827889873678679999986899757-699999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 998248878556
Q 027848 110 YLTLLYHYEQVH 121 (218)
Q Consensus 110 Y~kyLlpYE~~~ 121 (218)
|++||++||++.
T Consensus 83 Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 83 YERILYPYELFQ 94 (96)
T ss_dssp HTTTTHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999979999786
No 10
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=1.00 E-value=1 Score=166.21 Aligned_cols=93 Identities=24% Similarity=0.378 Sum_probs=87.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCHH
Q ss_conf 9987556784689999999996319988-887149945044436999873286122023677688886617899987378
Q 027848 25 SSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (218)
Q Consensus 25 ~~~e~~~~er~~Fl~~L~~F~~~rG~pl-k~P~i~Gk~VDLy~Ly~~V~~~GGy~kVt~~k~W~eVa~~LGlp~~~tsas 103 (218)
.-+++.+++++.|+++|.+||+++|+|+ ++|.++|++||||+||.+|+++|||++||++++|.+|++.||+|+ +
T Consensus 10 ~~~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~ 84 (123)
T 1kkx_A 10 HHHGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----Y 84 (123)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----H
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCEEECHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCH-----H
T ss_conf 11477630699999999999998399887685089985049999999988158775262361899999978986-----9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999982488785565
Q 027848 104 FVLRKHYLTLLYHYEQVHF 122 (218)
Q Consensus 104 ~~LK~~Y~kyLlpYE~~~~ 122 (218)
..||++|++||+|||++..
T Consensus 85 ~~Lr~~Y~k~L~~yE~~~~ 103 (123)
T 1kkx_A 85 QQLESIYFRILLPYERHMI 103 (123)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999799999986
Done!