Query 027849
Match_columns 218
No_of_seqs 122 out of 138
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 18:22:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027849.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2215-2219//hhsearch_pdb/027849hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 1.0 1 1 33.0 7.6 103 93-207 6-112 (528)
2 1lw3_A Myotubularin-related pr 1.0 1 1 32.8 7.5 121 73-206 59-183 (657)
3 2hth_B Vacuolar protein sortin 1.0 1 1 22.8 4.5 84 114-209 35-132 (140)
4 2cay_A VPS36 PH domain, vacuol 1.0 1 1 19.2 3.8 83 114-208 48-135 (145)
5 1t77_A Lipopolysaccharide-resp 1.0 1 1 18.4 -0.4 82 105-195 6-96 (414)
6 2yf0_A Myotubularin-related pr 1.0 1 1 18.0 10.3 69 111-196 19-87 (512)
7 1w7p_D VPS36P, YLR417W; ESCRT- 1.0 1 1 17.6 0.0 43 172-217 390-436 (566)
8 2d9z_A Protein kinase C, NU ty 1.0 1 1 17.0 3.4 44 145-191 43-90 (129)
9 1vcb_B Protein (elongin C); tu 1.0 1 1 16.7 1.4 17 171-187 14-30 (112)
10 3op0_A Signal transduction pro 1.0 1 1 16.1 0.3 34 55-91 68-105 (323)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=1.00 E-value=1 Score=33.00 Aligned_cols=103 Identities=20% Similarity=0.201 Sum_probs=62.6
Q ss_pred CCCCCCCCHHHHHHC--CEEECCCCCCEEEEEEECCEEEEEECCCCEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 035784301322110--000037876023588650427775179702338999744488799885456450037778789
Q 027849 93 EFHKLAGEKLLKAYA--CYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWN 170 (218)
Q Consensus 93 ~F~v~~~EkLlKa~~--CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~~~ 170 (218)
-|...|||.++..-. =|+..-.|++.|+|||++.|+.|.+...- . ...+-|||..|..|........
T Consensus 6 ~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~--------~---~~~~~iPL~~I~~vek~~~~s~ 74 (528)
T 1zsq_A 6 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD--------P---PFVLDASLGVINRVEKIGGASS 74 (528)
T ss_dssp CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS--------S---CEEEEEEGGGEEEEEEECCTTC
T ss_pred CCCCCCCCEEEEECCCEEEECCCCCCEEEEEEEECCEEEEECCCCC--------C---CEEEEEECCCEEEEEECCCCCC
T ss_conf 8964899727886387799578888543899998889999706898--------6---3799950010589997478776
Q ss_pred C--CCCEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHC
Q ss_conf 9--787289998439523553300099999999999833
Q 027849 171 P--SEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRR 207 (218)
Q Consensus 171 P--~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~ai~~ 207 (218)
. .-..|+|..-| +..+=.+|-.-+...+.+-++|.+
T Consensus 75 ~~~~~~~l~I~CKD-fr~~~f~f~~~~~~~~~v~~~L~~ 112 (528)
T 1zsq_A 75 RGENSYGLETVCKD-IRNLRFAHKPEGRTRRSIFENLMK 112 (528)
T ss_dssp CSTTCSEEEEEETT-TEEEEEECCGGGCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCC-CEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 78877528999158-818999956850789999999999
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=1.00 E-value=1 Score=32.81 Aligned_cols=121 Identities=20% Similarity=0.188 Sum_probs=69.1
Q ss_pred HHHHCEEEEECCCCCEEEEECCCCCCCCHHHHHHC--CEEECCCCCCEEEEEEECCEEEEEECCCCEEECCCCCEEEEEE
Q ss_conf 75302032111773201100035784301322110--0000378760235886504277751797023389997444887
Q 027849 73 KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYA--CYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYF 150 (218)
Q Consensus 73 klslGakil~~GG~ekiFkQ~F~v~~~EkLlKa~~--CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~Y 150 (218)
.+.+.-++++++-.. .=.--|...|||.++..-. =|+..-.|++.|+|||++.|+.|.+...- . .+
T Consensus 59 ~~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~--------~---~~ 126 (657)
T 1lw3_A 59 NFSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD--------P---PF 126 (657)
T ss_dssp -------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS--------S---CE
T ss_pred CHHHHHHHHHCCCCC-CCCCCCCCCCCEEEEEEECCEEEECCCCCCEEEEEEEECCEEEEEECCCC--------C---CE
T ss_conf 111225655312111-46898860788458997278799468888566899997788999706898--------6---26
Q ss_pred EEEEECCCCCCCCCCCCCCCCCC--CEEEEEEECCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 99885456450037778789978--728999843952355330009999999999983
Q 027849 151 KVVVDLDQLRTVNPSANRWNPSE--KYIHVVTRDGYEFWFMGFISYDKALKTLTEALR 206 (218)
Q Consensus 151 KVvIPL~kik~Vnps~n~~~P~e--KYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~ai~ 206 (218)
.+-|||..|..|..........+ -.|+|..-| +..+-.+|-.-+...+.+-++|.
T Consensus 127 ~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKD-fR~~~f~f~~~~~~~~~v~~~L~ 183 (657)
T 1lw3_A 127 VLDASLGVINRVEKIGGASSRGENSYGLETVCKD-IRNLRFAHKPEGRTRRSIFENLM 183 (657)
T ss_dssp EEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT-TEEEEEECCGGGCCHHHHHHHHH
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCEEEEEECC-CCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9984010038999637876668877418999048-81899995786426899999999
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=1.00 E-value=1 Score=22.77 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=52.0
Q ss_pred CCCCEEEEEEECCEEEEEECCCCEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE------------
Q ss_conf 87602358865042777517970233899974448879988545645003777878997872899984------------
Q 027849 114 NGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTR------------ 181 (218)
Q Consensus 114 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTv------------ 181 (218)
+.--.|+||+++.|+.|-.+.. . ..-+.|||..|+.+...+-....+-|++--...
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~-~-----------~~s~~lpl~~v~~~e~~~~~f~~s~Ki~l~l~~~~~~~~~gp~~~ 102 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKN-H-----------ECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQS 102 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTC-C-----------SCCEEEEGGGEEEEEEECCTTSSCCEEEEEECCCCCCSSSCCCST
T ss_pred CCCCCCEEEEECCEEEEECCCC-C-----------CEEEEEEHHHEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 7773888998637799955998-7-----------548997858802311215622458608998368876678887666
Q ss_pred CCCEEEEEEECC--HHHHHHHHHHHHHCCC
Q ss_conf 395235533000--9999999999983399
Q 027849 182 DGYEFWFMGFIS--YDKALKTLTEALRRFP 209 (218)
Q Consensus 182 D~~eFWFMGFvn--Y~kA~k~Lq~ai~~~~ 209 (218)
++..+.=.-|-+ =+.=.+.|.+|+.+..
T Consensus 103 s~~~~~kLsFr~Gg~~eF~~~L~~al~~k~ 132 (140)
T 2hth_B 103 SKNSYIKLSFKEHGQIEFYRRLSEEMTQRR 132 (140)
T ss_dssp TSCCEEEEEETTSCHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 667689999828997699999999999722
No 4
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=1.00 E-value=1 Score=19.19 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=46.3
Q ss_pred CCCCEEEEEEECCEEEEEECCCCEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE---CCCEEEEEE
Q ss_conf 87602358865042777517970233899974448879988545645003777878997872899984---395235533
Q 027849 114 NGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTR---DGYEFWFMG 190 (218)
Q Consensus 114 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTv---D~~eFWFMG 190 (218)
.+--.|+||+++.|+.|-.+.+-. -.-+.+||..|+.+...+-...++-|-+ +.-. .+..++=+-
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~~~~-----------~~SfslPL~~v~~~e~~~~~fg~s~Ki~-l~~~p~~~~~~~~KLs 115 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDAKPT-----------QNSLGLELDDLAYVNYSSGFLTRSPRLI-LFFKDPSSSTEFVQLS 115 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESSCHH-----------HHCEEEEGGGEEEEEEECSSSSSSCEEE-EEESSCSSTTCCEEEE
T ss_pred CCCCCCEEEEECCEEEEECCCCCC-----------CEEEEEEHHHEEEEEEECCCCCCCCEEE-EEECCCCCCCEEEEEE
T ss_conf 677763899876869983599976-----------4599967586035167767445685189-9856788886089999
Q ss_pred ECC--HHHHHHHHHHHHHCC
Q ss_conf 000--999999999998339
Q 027849 191 FIS--YDKALKTLTEALRRF 208 (218)
Q Consensus 191 Fvn--Y~kA~k~Lq~ai~~~ 208 (218)
|-+ -+-=.+.|++|+.+.
T Consensus 116 Fk~GGa~eF~~~l~~al~~~ 135 (145)
T 2cay_A 116 FRKSDGVLFSQATERALENI 135 (145)
T ss_dssp ESSSCCHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHH
T ss_conf 84799069999999999999
No 5
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=1.00 E-value=1 Score=18.39 Aligned_cols=82 Identities=11% Similarity=0.121 Sum_probs=57.4
Q ss_pred HHCCEEECCCCCCEEEEEEECCEEEEEECCCCE-EEC--------CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 110000037876023588650427775179702-338--------99974448879988545645003777878997872
Q 027849 105 AYACYISTSNGPVIGTLYISTQRMAFCSDYPLS-HYS--------SSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKY 175 (218)
Q Consensus 105 a~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~-~~s--------p~g~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKY 175 (218)
...|.+-|-.+-+.|.|.|++.++-|..|..-. |.. ..|.. ..+++..|+.|-...-.. .+.-
T Consensus 6 ~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~I~~i~~Rryll--~~~a 77 (414)
T 1t77_A 6 STPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLH------GKWLFTEIRSIFSRRYLL--QNTA 77 (414)
T ss_dssp EEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTT------CEEEGGGEEEEEEEEETT--EEEE
T ss_pred EEEEEEEEEECCEEEEEEEECCEEEEEECCCCCCCCCCCCCHHCCCCCCC------EEECCHHEEEEEEEECCC--CCEE
T ss_conf 98779985405163699996888999857876331235500210256753------176013503244230037--6636
Q ss_pred EEEEEECCCEEEEEEECCHH
Q ss_conf 89998439523553300099
Q 027849 176 IHVVTRDGYEFWFMGFISYD 195 (218)
Q Consensus 176 IqIvTvD~~eFWFMGFvnY~ 195 (218)
|||.+.||--+ |..|-+-+
T Consensus 78 lEif~~~g~s~-~l~F~~~~ 96 (414)
T 1t77_A 78 LEIFMANRVAV-MFNFPDPA 96 (414)
T ss_dssp EEEEETTSCEE-EEECSSHH
T ss_pred EEEEECCCCEE-EEECCCHH
T ss_conf 99997489479-99808889
No 6
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=17.97 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=40.5
Q ss_pred ECCCCCCEEEEEEECCEEEEEECCCCEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEE
Q ss_conf 03787602358865042777517970233899974448879988545645003777878997872899984395235533
Q 027849 111 STSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 190 (218)
Q Consensus 111 STtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMG 190 (218)
+...+++.|+|||++.|+.|.++.. +. .-||+..|.+|...... .....|+|..-|---+-| .
T Consensus 19 ~~~~~~~~GtL~lTn~~LiF~~~~~--------~e------~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr~~~f-~ 81 (512)
T 2yf0_A 19 STSNKSLTGTLYLTATHLLFIDSHQ--------KE------TWILHHHIASVEKLALT--TSGCPLVIQCKNFRTVHF-I 81 (512)
T ss_dssp -----CCEEEEEECSSEEEEEESSS--------CE------EEEEGGGEEEEEECCCB--TTBEEEEEEETTSCEEEE-E
T ss_pred CCCCCCEEEEEEEECCEEEEECCCC--------CC------EEECCCCEEEEEEECCC--CCCCEEEEEECCCCEEEE-E
T ss_conf 7888851489999778999967999--------84------07645555689981688--887649999158818999-9
Q ss_pred ECCHHH
Q ss_conf 000999
Q 027849 191 FISYDK 196 (218)
Q Consensus 191 FvnY~k 196 (218)
|-.-+.
T Consensus 82 f~~~~~ 87 (512)
T 2yf0_A 82 VPRERD 87 (512)
T ss_dssp ESCHHH
T ss_pred ECCHHH
T ss_conf 488079
No 7
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=1.00 E-value=1 Score=17.59 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=21.1
Q ss_pred CCCEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHCCC---CC-CCCCCC
Q ss_conf 78728999843952355330009999999999983399---99-999525
Q 027849 172 SEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP---DT-SGGLVP 217 (218)
Q Consensus 172 ~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~ai~~~~---~~-~~~~~~ 217 (218)
..-|+ +||-|.+. =.|-.-||-|.+-.+=.+.... .. .||+++
T Consensus 390 ~~s~L-~Vtrd~~~--s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmIt 436 (566)
T 1w7p_D 390 RRPLL-ILDREKFL--NKELFLDEIAREIYEFTLSEFKDLNSDTNYMIIT 436 (566)
T ss_dssp -------CCSSCCC--CHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEE
T ss_pred HHHHC-CCCHHHCC--CHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEE
T ss_conf 67526-40265527--7138999999999999974320210013768078
No 8
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=17.04 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=30.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCC--CCC--CEEEEEEECCCEEEEEEE
Q ss_conf 44488799885456450037778789--978--728999843952355330
Q 027849 145 QEWVYFKVVVDLDQLRTVNPSANRWN--PSE--KYIHVVTRDGYEFWFMGF 191 (218)
Q Consensus 145 ~~~~~YKVvIPL~kik~Vnps~n~~~--P~e--KYIqIvTvD~~eFWFMGF 191 (218)
...-|||. |||..|-.|.|..+-.. +.. -..+|+| .+-.| |+|=
T Consensus 43 ~~~k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y-~Vge 90 (129)
T 2d9z_A 43 SGSKYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVY-FVGE 90 (129)
T ss_dssp SCCSCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEE-EECB
T ss_pred CCCCEECE-EEHHHHCCCCCCCCCCCCCCCCCCCEEEEEE-CCEEE-EECC
T ss_conf 88721110-2278804012135765567788884487887-78779-9735
No 9
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=1.00 E-value=1 Score=16.72 Aligned_cols=17 Identities=35% Similarity=0.829 Sum_probs=9.6
Q ss_pred CCCCEEEEEEECCCEEE
Q ss_conf 97872899984395235
Q 027849 171 PSEKYIHVVTRDGYEFW 187 (218)
Q Consensus 171 P~eKYIqIvTvD~~eFW 187 (218)
|..+||.++|-||++|.
T Consensus 14 ~~~~~v~L~SsDG~~F~ 30 (112)
T 1vcb_B 14 PDAMYVKLISSDGHEFI 30 (112)
T ss_dssp ---CEEEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCEEE
T ss_conf 98887999868999899
No 10
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=1.00 E-value=1 Score=16.15 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=19.9
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHCEEEEE----CCCCCEEEE
Q ss_conf 1111201383725899987530203211----177320110
Q 027849 55 NVWHHLRISPRLSDAAMAKIAQGTKVFT----EGGYEKVFQ 91 (218)
Q Consensus 55 ~i~~hlk~gp~~set~~gklslGakil~----~GG~ekiFk 91 (218)
+-++.+++ .-+..+.|-.+-++.+. .++-|++|.
T Consensus 68 ~~~~yl~i---~l~nl~~K~kq~~~Lf~~~~~k~~~e~~f~ 105 (323)
T 3op0_A 68 GSGDFLLI---YLANLEAKSRQVAALLPPRGRRSANDELFR 105 (323)
T ss_dssp SHHHHHHH---HHHHHHHHHHHHHHHSCSSSCSSCCGGGGS
T ss_pred CCCCHHHH---HHHHHHHHHHHHHHHCCCCCCCCHHHHHHC
T ss_conf 64109999---999999999999985476666423666651
Done!