BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027850
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 70/121 (57%)
Query: 83 GNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSN 142
G+ P + +L++ N L+G IPKE+G + L L+L HN+++G IP + L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 143 LKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
L L L+ NKL G+IP+ ++ L L +D+SNN+L G IP G F F F+NNP L
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 738
Query: 203 G 203
G
Sbjct: 739 G 739
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 74/115 (64%)
Query: 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
+ + L L LSG + LG L +L+ L+L++N L G+IP+EL +K+L +L L N+
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
LTG IP LS +NL ++ L+ N+LTG+IP+ + +L NL IL +SNN G IP
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
N + L L N +G + P L L L L N L+G IP LG L L L L+ N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT-AGSF 187
L G IP L + L+ L L+ N LTG+IP L+ NL + +SNN L G IP G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 188 SKFSEESFMNNPRLEGPELMGFVRYDVGDCK 218
+ NN G + ++GDC+
Sbjct: 511 ENLAILKLSNN------SFSGNIPAELGDCR 535
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 86 VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKF 145
+P LG LQ+L++ N L+G + + L L++ N GPIPP L +L++
Sbjct: 213 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 270
Query: 146 LRLNGNKLTGKIPRELT-KLGNLKILDVSNNDLCGTIP 182
L L NK TG+IP L+ L LD+S N G +P
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 33/178 (18%)
Query: 64 TCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKEL---------- 113
CD +T LDL G + P G L+ L L NN +G++P +
Sbjct: 289 ACDT---LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 345
Query: 114 --------GQL--------KSLISLDLYHNNLTGPIPPSLSR--LSNLKFLRLNGNKLTG 155
G+L SL++LDL NN +GPI P+L + + L+ L L N TG
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 156 KIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSE-ESFMNNPRLEGPELMGFVR 211
KIP L+ L L +S N L GTIP++ GS SK + + ++N E P+ + +V+
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 92 LERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150
L+ LQYL L N G+IP L G +L LDL N+ G +PP S L+ L L+
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 151 NKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTA 184
N +G++P + L K+ LK+LD+S N+ G +P +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 74 LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
+ L N +L+G + +G+LE L L+L N+ +G IP ELG +SLI LDL N G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 134 PPSLSRLSNLKFLRLNGNKLTGK 156
P ++ + S ++ N + GK
Sbjct: 552 PAAMFKQSG----KIAANFIAGK 570
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 81 LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL 140
L+G + L L ++ L N L G+IPK +G+L++L L L +N+ +G IP L
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 141 SNLKFLRLNGNKLTGKIPRELTK 163
+L +L LN N G IP + K
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFK 557
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 29 EGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLS-GNLVP 87
E L + + + D + +L W +PCT+ VTC D++VT +DL + L+ G
Sbjct: 10 EIHQLISFKDVLPD-KNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAV 66
Query: 88 ELGKLERLQYLELYMNNLAGQIPKELGQLK---SLISLDLYHNNLTGPIP--PSLSRLSN 142
L L+++N I + K SL SLDL N+L+GP+ SL S
Sbjct: 67 SSSLLSLTGLESLFLSN--SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 124
Query: 143 LKFLRLNGNKLT--GKIPRELTKLGNLKILDVSNNDLCGT 180
LKFL ++ N L GK+ L KL +L++LD+S N + G
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA 163
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 94 RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKL 153
L++L + N ++G + ++ + +L LD+ NN + IP L S L+ L ++GNKL
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 232
Query: 154 TGKIPRELTKLGNLKILDVSNNDLCGTIP 182
+G R ++ LK+L++S+N G IP
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 65 CDADNRVTRLDLGNGKLSG--NLVPELGKLERLQYLELYMNNL--AGQIPKELGQLKSLI 120
C A +T LDL LSG + LG L++L + N L G++ L +L SL
Sbjct: 95 CSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLE 151
Query: 121 SLDLYHNNLTGP--IPPSLSR-LSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LDL N+++G + LS LK L ++GNK++G + ++++ NL+ LDVS+N+
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNF 209
Query: 178 CGTIPTAGSFSKFSE 192
IP G S
Sbjct: 210 STGIPFLGDCSALQH 224
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 70/121 (57%)
Query: 83 GNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSN 142
G+ P + +L++ N L+G IPKE+G + L L+L HN+++G IP + L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 143 LKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
L L L+ NKL G+IP+ ++ L L +D+SNN+L G IP G F F F+NNP L
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Query: 203 G 203
G
Sbjct: 742 G 742
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 74/115 (64%)
Query: 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
+ + L L LSG + LG L +L+ L+L++N L G+IP+EL +K+L +L L N+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
LTG IP LS +NL ++ L+ N+LTG+IP+ + +L NL IL +SNN G IP
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
N + L L N +G + P L L L L N L+G IP LG L L L L+ N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT-AGSF 187
L G IP L + L+ L L+ N LTG+IP L+ NL + +SNN L G IP G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 188 SKFSEESFMNNPRLEGPELMGFVRYDVGDCK 218
+ NN G + ++GDC+
Sbjct: 514 ENLAILKLSNN------SFSGNIPAELGDCR 538
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 86 VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKF 145
+P LG LQ+L++ N L+G + + L L++ N GPIPP L +L++
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 273
Query: 146 LRLNGNKLTGKIPRELT-KLGNLKILDVSNNDLCGTIP 182
L L NK TG+IP L+ L LD+S N G +P
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 33/178 (18%)
Query: 64 TCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKEL---------- 113
CD +T LDL G + P G L+ L L NN +G++P +
Sbjct: 292 ACDT---LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 114 --------GQL--------KSLISLDLYHNNLTGPIPPSLSR--LSNLKFLRLNGNKLTG 155
G+L SL++LDL NN +GPI P+L + + L+ L L N TG
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 156 KIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSE-ESFMNNPRLEGPELMGFVR 211
KIP L+ L L +S N L GTIP++ GS SK + + ++N E P+ + +V+
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 92 LERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150
L+ LQYL L N G+IP L G +L LDL N+ G +PP S L+ L L+
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 151 NKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTA 184
N +G++P + L K+ LK+LD+S N+ G +P +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 74 LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
+ L N +L+G + +G+LE L L+L N+ +G IP ELG +SLI LDL N G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 134 PPSLSRLSNLKFLRLNGNKLTGK 156
P ++ + S ++ N + GK
Sbjct: 555 PAAMFKQSG----KIAANFIAGK 573
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 81 LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL 140
L+G + L L ++ L N L G+IPK +G+L++L L L +N+ +G IP L
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 141 SNLKFLRLNGNKLTGKIPRELTK 163
+L +L LN N G IP + K
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFK 560
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 29 EGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLS-GNLVP 87
E L + + + D + +L W +PCT+ VTC D++VT +DL + L+ G
Sbjct: 13 EIHQLISFKDVLPD-KNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAV 69
Query: 88 ELGKLERLQYLELYMNNLAGQIPKELGQLK---SLISLDLYHNNLTGPIP--PSLSRLSN 142
L L+++N I + K SL SLDL N+L+GP+ SL S
Sbjct: 70 SSSLLSLTGLESLFLSN--SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127
Query: 143 LKFLRLNGNKLT--GKIPRELTKLGNLKILDVSNNDLCGT 180
LKFL ++ N L GK+ L KL +L++LD+S N + G
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA 166
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 94 RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKL 153
L++L + N ++G + ++ + +L LD+ NN + IP L S L+ L ++GNKL
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 154 TGKIPRELTKLGNLKILDVSNNDLCGTIP 182
+G R ++ LK+L++S+N G IP
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 65 CDADNRVTRLDLGNGKLSG--NLVPELGKLERLQYLELYMNNL--AGQIPKELGQLKSLI 120
C A +T LDL LSG + LG L++L + N L G++ L +L SL
Sbjct: 98 CSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLE 154
Query: 121 SLDLYHNNLTGP--IPPSLSR-LSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LDL N+++G + LS LK L ++GNK++G + ++++ NL+ LDVS+N+
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNF 212
Query: 178 CGTIPTAGSFS 188
IP G S
Sbjct: 213 STGIPFLGDCS 223
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 35/187 (18%)
Query: 29 EGDALFALRRAVKDPQGVLQSWDPTLVDPC--TWFHVTCDADN---RVTRLDL------- 76
+ AL +++ + +P L SW PT D C TW V CD D RV LDL
Sbjct: 7 DKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 77 --------------------GNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQL 116
G L G + P + KL +L YL + N++G IP L Q+
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 117 KSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNL-KILDVSNN 175
K+L++LD +N L+G +PPS+S L NL + +GN+++G IP L + +S N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 176 DLCGTIP 182
L G IP
Sbjct: 185 RLTGKIP 191
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 47/183 (25%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLI-SLDLYHNNL 129
+ LD LSG L P + L L + N ++G IP G L S+ + N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 130 TGPIPPSLSRLS----------------------------------------------NL 143
TG IPP+ + L+ NL
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 144 KFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEG 203
L L N++ G +P+ LT+L L L+VS N+LCG IP G+ +F ++ NN L G
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Query: 204 PEL 206
L
Sbjct: 307 SPL 309
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 99 ELYMN-NLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKI 157
ELY++ N +PKEL K L +DL +N ++ S S ++ L L L+ N+L
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 158 PRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFM 196
PR L +L++L + ND+ ++ G+F+ S S +
Sbjct: 95 PRTFDGLKSLRLLSLHGNDI--SVVPEGAFNDLSALSHL 131
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 74 LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
LDL N ++ N+ + K + L L L N+L ++P E+ L +L LDL HN LT +
Sbjct: 229 LDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 134 PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
P L LK+ N +T +P E L NL+ L V N L
Sbjct: 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELG---QLKSLISLDLYHN 127
+TRL L NG L E+ L L+ L+L N L +P ELG QLK D
Sbjct: 249 LTRLYL-NGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD---- 302
Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTK 163
N+ +P L NL+FL + GN L + + LT+
Sbjct: 303 NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 133 IPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
I ++ + L L LNGN LT ++P E+ L NL++LD+S+N L GS +
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 193 ESFMNN 198
F +N
Sbjct: 298 FYFFDN 303
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 116 LKSLISLDLYHNNLT--GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKI--LD 171
+ L+SL+L +N L + + + NLK L L+GN+L + REL K+ LK+ L
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELW 220
Query: 172 VSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDV 214
+ N LC T ++ E F RL+G EL + +DV
Sbjct: 221 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV 263
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 116 LKSLISLDLYHNNLT--GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKI--LD 171
+ L+SL+L +N L + + + NLK L L+GN+L + REL K+ LK+ L
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELW 220
Query: 172 VSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDV 214
+ N LC T ++ E F RL+G EL + +DV
Sbjct: 221 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV 263
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 116 LKSLISLDLYHNNLT--GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKI--LD 171
+ L+SL+L +N L + + + NLK L L+GN+L + REL K+ LK+ L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELW 226
Query: 172 VSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDV 214
+ N LC T ++ E F RL+G EL + +DV
Sbjct: 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV 269
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 95 LQYLELYMN-NLAGQIPKE--LGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
L EL +N N G+I + G+L L+ L+L N LTG P + S+++ L+L N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 152 KLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMN 197
K+ + L LK L++ +N + +P GSF + + +N
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLN 132
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 92 LERLQYLELYMNNLAGQIPKELG-QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150
LE+L++L+ +NL + L++LI LD+ H + + LS+L+ L++ G
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 151 NKLTGK-IPRELTKLGNLKILDVSNNDLCGTIPTA 184
N +P T+L NL LD+S L PTA
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 81 LSGNLVPELG-----KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIP 134
L+GN + L L LQ L NLA +G LK+L L++ HN + +P
Sbjct: 107 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 166
Query: 135 PSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNL 167
S L+NL+ L L+ NK+ +L L +
Sbjct: 167 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 92 LERLQYLELYMNNLAGQIPKELGQ------LKSLISLDLYHNNLTGPIPPSLSRLSNLKF 145
LE+L++L+ +NL K++ + L++LI LD+ H + + LS+L+
Sbjct: 100 LEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154
Query: 146 LRLNGNKLTGK-IPRELTKLGNLKILDVSNNDLCGTIPTA 184
L++ GN +P T+L NL LD+S L PTA
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 89 LGKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147
L L L+ L++ N ++ + +L L+SLI+ NN I P L L+NL L
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELS 223
Query: 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
LNGN+L K L L NL LD++NN + P +G +K +E
Sbjct: 224 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTE 265
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNL 129
+T L+L +L + + L+ L YL LY NN++ P L +L+ L + NN
Sbjct: 285 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFSNNK 338
Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIP----RELTKLG 165
+ SL+ L+N+ +L N+++ P +T+LG
Sbjct: 339 VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 377
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 92 LERLQYLELYMNNLAGQIPKELG-QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150
LE+L++L+ +NL + L++LI LD+ H + + LS+L+ L++ G
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 151 NKLTGK-IPRELTKLGNLKILDVSNNDLCGTIPTA 184
N +P T+L NL LD+S L PTA
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 81 LSGNLVPELG-----KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIP 134
L+GN + L L LQ L NLA +G LK+L L++ HN + +P
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 135 PSLSRLSNLKFLRLNGNKL 153
S L+NL+ L L+ NK+
Sbjct: 143 EYFSNLTNLEHLDLSSNKI 161
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 83 GNLVPEL---GKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLTGPIPPSLS 138
GN V +L L L+ L++ N ++ + +L L+SLI+ NN I P L
Sbjct: 159 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LG 213
Query: 139 RLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
L+NL L LNGN+L K L L NL LD++NN + P +G +K +E
Sbjct: 214 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTE 264
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNL 129
+T L+L +L + + L+ L YL LY NN++ P L +L+ L + NN
Sbjct: 284 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFSNNK 337
Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIP----RELTKLG 165
+ SL+ L+N+ +L N+++ P +T+LG
Sbjct: 338 VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 376
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 83 GNLVPEL---GKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLTGPIPPSLS 138
GN V +L L L+ L++ N ++ + +L L+SLI+ NN I P L
Sbjct: 163 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LG 217
Query: 139 RLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
L+NL L LNGN+L K L L NL LD++NN + P +G +K +E
Sbjct: 218 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTE 268
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNL 129
+T L+L +L + + L+ L YL LY NN++ P L +L+ L + NN
Sbjct: 288 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFANNK 341
Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIP----RELTKLG 165
+ SL+ L+N+ +L N+++ P +T+LG
Sbjct: 342 VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 380
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 83 GNLVPEL---GKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLTGPIPPSLS 138
GN V +L L L+ L++ N ++ + +L L+SLI+ NN I P L
Sbjct: 159 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LG 213
Query: 139 RLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
L+NL L LNGN+L K L L NL LD++NN + P +G +K +E
Sbjct: 214 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTE 264
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNL 129
+T L+L +L + + L+ L YL LY NN++ P L +L+ L ++NN
Sbjct: 284 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFYNNK 337
Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIP----RELTKLG 165
+ SL+ L+N+ +L N+++ P +T+LG
Sbjct: 338 VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 376
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 83 GNLVPEL---GKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLTGPIPPSLS 138
GN V +L L L+ L++ N ++ + +L L+SLI+ NN I P L
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LG 218
Query: 139 RLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
L+NL L LNGN+L K L L NL LD++NN + P +G +K +E
Sbjct: 219 ILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTE 269
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNL 129
+T L+L +L + + L+ L YL LY NN++ P L +L+ L ++NN
Sbjct: 289 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFYNNK 342
Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIP----RELTKLG 165
+ SL+ L+N+ +L N+++ P +T+LG
Sbjct: 343 VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 381
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 89 LGKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147
L L L+ L++ N ++ + +L L+SLI+ NN I P L L+NL L
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELS 223
Query: 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
LNGN+L K L L NL LD++NN + P +G +K +E
Sbjct: 224 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTE 265
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNL 129
+T L+L +L + + L+ L YL LY NN++ P L +L+ L ++NN
Sbjct: 285 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFYNNK 338
Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIP----RELTKLG 165
+ SL+ L+N+ +L N+++ P +T+LG
Sbjct: 339 VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 377
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 89 LGKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147
L L L+ L++ N ++ + +L L+SLI+ NN I P L L+NL L
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITP-LGILTNLDELS 223
Query: 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
LNGN+L K L L NL LD++NN + P +G +K +E
Sbjct: 224 LNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTE 265
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNL 129
+T L+L +L + + L+ L YL LY NN++ P L +L+ L ++NN
Sbjct: 285 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFYNNK 338
Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIP----RELTKLG 165
+ SL+ L+N+ +L N+++ P +T+LG
Sbjct: 339 VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 377
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 92 LERLQYLELYMNNLAGQIPKELG-QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150
LE+L++L+ +NL + L++LI LD+ H + + LS+L+ L++ G
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 151 NKLTGK-IPRELTKLGNLKILDVSNNDLCGTIPTA 184
N +P T+L NL LD+S L PTA
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 81 LSGNLVPELG-----KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIP 134
L+GN + L L LQ L NLA +G LK+L L++ HN + +P
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 135 PSLSRLSNLKFLRLNGNKL 153
S L+NL+ L L+ NK+
Sbjct: 143 EYFSNLTNLEHLDLSSNKI 161
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
DN++T+L+ G L L+ L L N L L L LDL N
Sbjct: 49 DNQITKLEPG----------VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98
Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSF 187
LT RL +LK L + NKLT ++PR + +L +L L + N L +IP G+F
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIP-HGAF 155
Query: 188 SKFSE 192
+ S
Sbjct: 156 DRLSS 160
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 66 DADNRVTRLDLGNGKLSGNLVPELGKLERLQYL-ELYMN-NLAGQIPKELGQLKSLISLD 123
D+ ++T LDLG +L+ ++P +RL +L EL+M N ++P+ + +L L L
Sbjct: 85 DSLTQLTVLDLGTNQLT--VLPS-AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLA 141
Query: 124 LYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
L N L + RLS+L L GN
Sbjct: 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 116 LKSLISLDLYHNNLT--GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKI--LD 171
+ L+SL+L +N L + + + NLK L L+GN+L K REL K+ LK+ L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL--KSERELDKIKGLKLEELW 226
Query: 172 VSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPEL 206
+ N LC T ++ E F RL+G EL
Sbjct: 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%)
Query: 74 LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
LDLG ++ E L+ LEL N ++ P L +L +L L N L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 134 PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
+ LSNL L ++ NK+ + L NLK L+V +NDL
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
+T+LD+ K+ L L L+ LE+ N+L + L SL L L NLT
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165
Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSN 174
+LS L L LRL + +L LK+L++S+
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 71 VTRLDLGNGKLSGNLVPELG--KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
+T L + + L+ VP L L L++L L N ++ L +L L + L
Sbjct: 226 LTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
L P + L+ L+ L ++GN+LT +GNL+ L + +N L
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 71 VTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
+T L L ++S VPE L L L L+ N +A P L L++L L+ NN
Sbjct: 155 LTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 129 LTGPIPPSLSRLSNLKFLRLNGN 151
L+ +L+ L L++LRLN N
Sbjct: 213 LSALPTEALAPLRALQYLRLNDN 235
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 116 LKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
L L L L HN L P S L+ L+ L LN N+LT +L NL+ILD+S N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 176 DLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRY 212
L P F S +N + EL F+ +
Sbjct: 537 QLLA--PNPDVFVSLSVLDITHNKFICECELSTFINW 571
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 71 VTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
+T L L ++S VPE L L L L+ N +A P L L++L L+ NN
Sbjct: 154 LTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 211
Query: 129 LTGPIPPSLSRLSNLKFLRLNGN 151
L+ +L+ L L++LRLN N
Sbjct: 212 LSALPTEALAPLRALQYLRLNDN 234
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 75 DLGNGK---LSGNLVPELGK-----LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126
DLGN L GN +P + + L L L L+ N++A P L L++L L+
Sbjct: 150 DLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 127 NNLTGPIPPSLSRLSNLKFLRLNGN 151
NNL+ L L +L++LRLN N
Sbjct: 210 NNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 11/127 (8%)
Query: 54 LVDPCTWF---HVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP 110
+VDP T+ H+ +R +LG G G L LQYL L NNL
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRG--------LAALQYLYLQDNNLQALPD 145
Query: 111 KELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKIL 170
L +L L L+ N + + L +L L L+ N + P LG L L
Sbjct: 146 NTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTL 205
Query: 171 DVSNNDL 177
+ N+L
Sbjct: 206 YLFANNL 212
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
V L LG KL + L +L L YL L N L +L +L L L N L
Sbjct: 65 VRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
+L+NL +L L N+L KL NL LD+ NN L ++P G F K
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLP-EGVFDKL 180
Query: 191 SE 192
++
Sbjct: 181 TQ 182
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 81 LSGNLVPEL-----GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP 135
L+GN + L KL L+ L L N L +L +L L LYHN L
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKG 151
Query: 136 SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEES- 194
+L+NL L L+ N+L KL LK L +++N L ++P G F + + +
Sbjct: 152 VFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL-KSVPD-GVFDRLTSLTH 209
Query: 195 --FMNNP 199
+NNP
Sbjct: 210 IWLLNNP 216
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
V LDL N +++ +L + LQ L L N + L SL LDL +N L+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 131 GPIPPSLSRLSNLKFLRLNGN--KLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
LS+L FL L GN K G+ + L L+IL V N D +F+
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKLQILRVGNMD---------TFT 163
Query: 189 KFSEESFMNNPRLEGPEL 206
K + F LE E+
Sbjct: 164 KIQRKDFAGLTFLEELEI 181
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 114 GQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVS 173
G +++ SLDL +N +T L R NL+ L L N + + LG+L+ LD+S
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 174 NNDLCGTIPTAGSFSKFSEESFMN 197
N L ++ F S +F+N
Sbjct: 109 YNYLSNL--SSSWFKPLSSLTFLN 130
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 116 LKSLISLDLYHNNLT--GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKI--LD 171
+ L+SL+L +N L + + + NLK L L+GN+L + REL K+ LK+ L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELW 226
Query: 172 VSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDV 214
+ N L T ++ E F RL+G EL + +DV
Sbjct: 227 LDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV 269
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
V L LG KL + L +L L YL L N L +L +L L L N L
Sbjct: 65 VRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
+L+NL +L L N+L KL NL LD+S N L ++P G F K
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLP-EGVFDKL 180
Query: 191 SE 192
++
Sbjct: 181 TQ 182
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%)
Query: 91 KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150
KL L YL L N L +L +L LDL +N L +L+ LK LRL
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 151 NKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
N+L +L +L+ + + +N T P S++
Sbjct: 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 81 LSGNLVPEL-----GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP 135
L+GN + L KL L+ L L N L +L +L L+L HN L
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Query: 136 SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESF 195
+L+NL L L+ N+L KL LK L + N L ++P G F + + +
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPD-GVFDRLTSLQY 209
Query: 196 M 196
+
Sbjct: 210 I 210
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
V LDL N +++ +L + LQ L L N + L SL LDL +N L+
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 131 GPIPPSLSRLSNLKFLRLNGN--KLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
LS+L FL L GN K G+ + L L+IL V N D +F+
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKLQILRVGNMD---------TFT 137
Query: 189 KFSEESFMNNPRLEGPEL 206
K + F LE E+
Sbjct: 138 KIQRKDFAGLTFLEELEI 155
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 114 GQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVS 173
G +++ SLDL +N +T L R NL+ L L N + + LG+L+ LD+S
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 174 NNDLCGTIPTAGSFSKFSEESFMN 197
N L ++ F S +F+N
Sbjct: 83 YNYLSNL--SSSWFKPLSSLTFLN 104
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 92 LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
L +L YL L N L +L SL L LY+N L + +L+ LK L+L+ N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 152 KLTGKIPRELTKLGNLKILDVSNN 175
+L L LK+L + N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Query: 91 KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150
+L L L L N L P+ L L L L +N L +L++LK LRL
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 151 NKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAG--SFSKFSEESFMNNP 199
N+L KL LK L + NN L +P S K NP
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQENP 216
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 122 LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LDL N L+ + RL+ L+ L LN NKL +L NL+ L V++N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 57 PCTWFHVTCDADNRVTRLDL---GNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKEL 113
P FH R+T+L L + KL +L+ L+ L + N L
Sbjct: 53 PSKAFH-------RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF 105
Query: 114 GQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVS 173
QL +L L L N L P L+ L +L L N+L KL +LK L +
Sbjct: 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165
Query: 174 NNDLCGTIPTAGSFSKFSE 192
NN L +P G+F K +E
Sbjct: 166 NNQL-KRVP-EGAFDKLTE 182
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 111
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NNDL
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 66 DADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLY 125
D +T L+L + +L + +L L++ N ++ P+ +L L L+L
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
HN L+ + + +NL L L N + K NL LD+S+N L T
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 116 LKSLISLDLYHNNLT---------GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTK-LG 165
L+ L LDL HNNL GPI L LS+L L L N +IP E+ K L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPI-YFLKGLSHLHILNLESNGF-DEIPVEVFKDLF 560
Query: 166 NLKILDVSNNDLCGTIPTA 184
LKI+D+ N+L T+P +
Sbjct: 561 ELKIIDLGLNNL-NTLPAS 578
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 66 DADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLY 125
D +T L+L + +L + +L L++ N ++ P+ +L L L+L
Sbjct: 27 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 86
Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
HN L+ + + +NL L L N + K NL LD+S+N L T
Sbjct: 87 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 116 LKSLISLDLYHNNLT---------GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTK-LG 165
L+ L LDL HNNL GPI L LS+L L L N +IP E+ K L
Sbjct: 508 LEKLEILDLQHNNLARLWKHANPGGPI-YFLKGLSHLHILNLESNGF-DEIPVEVFKDLF 565
Query: 166 NLKILDVSNNDLCGTIPTA 184
LKI+D+ N+L T+P +
Sbjct: 566 ELKIIDLGLNNL-NTLPAS 583
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 66 DADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLY 125
D +T L+L + +L + +L L++ N ++ P+ +L L L+L
Sbjct: 32 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 91
Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
HN L+ + + +NL L L N + K NL LD+S+N L T
Sbjct: 92 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 116 LKSLISLDLYHNNLT---------GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTK-LG 165
L+ L LDL HNNL GPI L LS+L L L N +IP E+ K L
Sbjct: 513 LEKLEILDLQHNNLARLWKHANPGGPI-YFLKGLSHLHILNLESNGF-DEIPVEVFKDLF 570
Query: 166 NLKILDVSNNDLCGTIPTA 184
LKI+D+ N+L T+P +
Sbjct: 571 ELKIIDLGLNNL-NTLPAS 588
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 56 RLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 111
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NN+L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 56 RLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 111
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NN+L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 84 NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNL 143
NL+ +G LE L + ++ Q LG++ + DL HN+LT SLS L +
Sbjct: 467 NLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHV---DLSHNSLTCDSIDSLSHLKGI 523
Query: 144 KFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEG 203
+L L N + PR L L +++S+N L T + + E N +LEG
Sbjct: 524 -YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKE----NLHKLEG 578
Query: 204 PE 205
E
Sbjct: 579 SE 580
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
V L+L + S +LQ L+L +L G +P + L L L L N+
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD 311
Query: 131 GPIPPSLSRLSNLKFLRLNGN--KLTGKIPRELTKLGNLKILDVSNNDL 177
S + +L L + GN KL + L KLGNL+ LD+S+ND+
Sbjct: 312 QLCQISAANFPSLTHLYIRGNVKKLHLGVGC-LEKLGNLQTLDLSHNDI 359
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 56 RLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 111
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NN+L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 109 IPKELGQLKSLISLDLYHNNLT---GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLG 165
+P+ L +L LDL HNNL+ P+ RL+NL L L+ N L +
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVPVP 88
Query: 166 NLKILDVSNNDL 177
NL+ LD+S+N L
Sbjct: 89 NLRYLDLSSNHL 100
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 103 NNLAGQIPKELGQLKSLISLD---LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPR 159
NN +P LG L LD L N L RL+ LK LRLN N+L
Sbjct: 92 NNQLASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149
Query: 160 ELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
KL NL+ L +S N L ++P G+F + +
Sbjct: 150 AFDKLTNLQTLSLSTNQL-QSVP-HGAFDRLGK 180
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 84 NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNL 143
NL+ +G LE L L NL + L+++ LDL HN+LTG +LS L L
Sbjct: 469 NLLQMVGSLE---ILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL 525
Query: 144 KFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL---CGTIPTAGSFSKF------SEES 194
+L + N + P L L I+++S+N L C I + + SEE+
Sbjct: 526 -YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITWYKENLHKLEDSEET 584
Query: 195 FMNNPRLEGPELMGFVRYDV 214
NP P L G DV
Sbjct: 585 TCANP----PSLRGVKLSDV 600
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 103 NNLAGQIPKELGQLKSLISLD---LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPR 159
NN +P LG L LD L N L RL+ LK LRLN N+L
Sbjct: 92 NNQLASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149
Query: 160 ELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192
KL NL+ L +S N L ++P G+F + +
Sbjct: 150 AFDKLTNLQTLSLSTNQL-QSVP-HGAFDRLGK 180
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 78 NGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLK--SLISLDLYHNNLTGPIPP 135
N L+ L EL +Q L L N L LK +L LDL +NNL
Sbjct: 208 NPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNG 266
Query: 136 SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDV 172
S S L +L++L L N + PR L NL+ L +
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 62 HVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLIS 121
H+ D + +T L+L + +L + +L L+ N+++ P EL Q+ L+
Sbjct: 18 HIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP-ELCQILPLLK 76
Query: 122 -LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
L+L HN L+ + +NL L L N + NL LD+S+N L T
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 111
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NN+L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 61 FHVTCDADNRVTRLDLGNGKLSGNLVPE--------LGKLERLQYLELYMNNL-----AG 107
F V C + L+ + LS NL+ E G LQ L L N+L G
Sbjct: 349 FLVPCSFSQHLKSLEFLD--LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 406
Query: 108 QIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNL 167
+I L LK+L SLD+ N P+P S ++FL L+ TG + L
Sbjct: 407 EI---LLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSS---TGIRVVKTCIPQTL 459
Query: 168 KILDVSNNDL 177
++LDVSNN+L
Sbjct: 460 EVLDVSNNNL 469
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 57 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 112
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NN+L
Sbjct: 113 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 81 LSGNLVPELG-----KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIP 134
L+GN + L L LQ L NLA +G LK+L L++ HN + +P
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 135 PSLSRLSNLKFLRLNGNKLTG 155
S L+NL+ L L+ NK+
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 81 LSGNLVPELG-----KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIP 134
L+GN + L L LQ L NLA +G LK+L L++ HN + +P
Sbjct: 84 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 143
Query: 135 PSLSRLSNLKFLRLNGNKL 153
S L+NL+ L L+ NK+
Sbjct: 144 EYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 81 LSGNLVPELG-----KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIP 134
L+GN + L L LQ L NLA +G LK+L L++ HN + +P
Sbjct: 85 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 144
Query: 135 PSLSRLSNLKFLRLNGNKL 153
S L+NL+ L L+ NK+
Sbjct: 145 EYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 81 LSGNLVPELG-----KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIP 134
L+GN + L L LQ L NLA +G LK+L L++ HN + +P
Sbjct: 84 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 143
Query: 135 PSLSRLSNLKFLRLNGNKL 153
S L+NL+ L L+ NK+
Sbjct: 144 EYFSNLTNLEHLDLSSNKI 162
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 111
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NN L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 111
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NN L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 76 LGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIP 134
L G SG L L++L LE NLA +G LK+L L++ HN + +P
Sbjct: 93 LALGAFSG-----LSSLQKLVALE---TNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 144
Query: 135 PSLSRLSNLKFLRLNGNKL 153
S L+NL+ L L+ NK+
Sbjct: 145 EYFSNLTNLEHLDLSSNKI 163
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 61 FHVTCDADNRVTRLDLGNGKLSGNLVPE--------LGKLERLQYLELYMNNL-----AG 107
F V C + L+ + LS NL+ E G LQ L L N+L G
Sbjct: 323 FLVPCSFSQHLKSLEFLD--LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380
Query: 108 QIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNL 167
+I L LK+L SLD+ N P+P S ++FL L+ TG + L
Sbjct: 381 EI---LLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSS---TGIRVVKTCIPQTL 433
Query: 168 KILDVSNNDL 177
++LDVSNN+L
Sbjct: 434 EVLDVSNNNL 443
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 111
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NN L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 96 QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTG 155
Q L LY N + P +L L LDL +N LT +L+ L L LN N+L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 99
Query: 156 KIPRELTKLGNLKIL 170
IPR NLK L
Sbjct: 100 SIPRG--AFDNLKSL 112
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 122 LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTI 181
L LY N +T P RL+ L L L+ N+LT KL L L +++N L +I
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSI 101
Query: 182 PTAGSFSKFSEES---FMNNP 199
P G+F + +NNP
Sbjct: 102 P-RGAFDNLKSLTHIWLLNNP 121
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHNN 128
R+T+L+L +L+ V G L L L+L N L Q LGQ L +L LD+ N
Sbjct: 56 RLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNR 111
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
LT +L L L+ L L GN+L P LT L+ L ++NN L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 96 QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTG 155
Q L LY N + P +L L LDL +N LT +L+ L L LN N+L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-K 91
Query: 156 KIPR 159
IPR
Sbjct: 92 SIPR 95
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 122 LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTI 181
L LY N +T P RL+ L L L+ N+LT KL L L +++N L +I
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSI 93
Query: 182 PTAGSFSKFSEES---FMNNP 199
P G+F + +NNP
Sbjct: 94 P-RGAFDNLKSLTHIWLLNNP 113
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 96 QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTG 155
Q L LY N + P +L L LDL +N LT +L+ L L LN N+L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-K 91
Query: 156 KIPR 159
IPR
Sbjct: 92 SIPR 95
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 122 LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTI 181
L LY N +T P RL+ L L L+ N+LT KL L L +++N L +I
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSI 93
Query: 182 PTAGSFS---KFSEESFMNNP 199
P G+F + +NNP
Sbjct: 94 P-RGAFDNLRSLTHIWLLNNP 113
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 81 LSGNLVPE--------LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGP 132
L GN P+ L L RL+ L L +L+ LK + +DL HN LT
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Query: 133 IPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
+LS L + +L L N ++ +P L L + +++ N L
Sbjct: 516 SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 124 LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
L +N +T P L NL+ L N NKLT KL L LD+++N L +IP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIP- 97
Query: 184 AGSFSKFSEESFM---NNP-RLEGPELMGFVRYDVGD 216
G+F + + NNP E ++M ++R V D
Sbjct: 98 RGAFDNLKSLTHIYLYNNPWDCECRDIM-YLRNWVAD 133
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 137 LSRLSNLKFLRLNGNKLTGKIP-RELTKLGNL-----KILDVS 173
+ L+NL++L LNGN++T P L KL NL KI D+S
Sbjct: 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS 104
>pdb|1GFU|A Chain A, Crystal Structure Of Mutant Human Lysozyme Substituted At
The Surface Positions
Length = 130
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 9/43 (20%)
Query: 10 HLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDP 52
HL + +L + IA DA+ +R V+DPQG+ ++WD
Sbjct: 78 HLSCSALLQDNIA--------DAVACAKRVVRDPQGI-RAWDA 111
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%)
Query: 66 DADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLY 125
D +T+L LG KL KL L YL L N L +L L L L
Sbjct: 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108
Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAG 185
N L +L+ LK LRL N+L +L +L+ + + +N T P
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 168
Query: 186 SFSKF 190
S++
Sbjct: 169 YLSEW 173
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 123 DLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSN 174
+L N ++G + + NLK L L+GNK+ E L KL NLK LD+ N
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 127
>pdb|2BQB|A Chain A, Contribution Of Hydrophobic Effect To The Conformational
Stability Of Human Lysozyme
Length = 130
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 9/41 (21%)
Query: 10 HLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSW 50
HL + +L + IA DA+ A +R V+DPQGV ++W
Sbjct: 78 HLSCSALLQDNIA--------DAVAAAKRVVRDPQGV-RAW 109
>pdb|1BB3|A Chain A, Human Lysozyme Mutant A96l
pdb|1BB3|B Chain B, Human Lysozyme Mutant A96l
pdb|1BB5|A Chain A, Human Lysozyme Mutant A96l Complexed With Chitotriose
pdb|1BB5|B Chain B, Human Lysozyme Mutant A96l Complexed With Chitotriose
Length = 130
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 9/41 (21%)
Query: 10 HLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSW 50
HL + +L + IA DA+ L+R V+DPQG+ ++W
Sbjct: 78 HLSCSALLQDNIA--------DAVACLKRVVRDPQGI-RAW 109
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 93 ERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNK 152
E + + L N + P K L +DL +N ++ P + L +L L L GNK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 153 LTGKIPREL 161
+T ++P+ L
Sbjct: 92 IT-ELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 93 ERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNK 152
E + + L N + P K L +DL +N ++ P + L +L L L GNK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 153 LTGKIPREL 161
+T ++P+ L
Sbjct: 92 IT-ELPKSL 99
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 121 SLDLYHNNLTGPIPPSLSRL---SNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
SLDL HN+L + PS R S L L L+ L ++P+ L L++LD+S+N L
Sbjct: 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL 284
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 86 VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKF 145
+P L L RL+ LEL N L P L SL L L H + + L +L+
Sbjct: 171 IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 146 LRLNGNKLTGKIPREL-TKLGNLKILDVSNN 175
L L+ N L +P +L T L L+ + +++N
Sbjct: 231 LNLSHNNLMS-LPHDLFTPLHRLERVHLNHN 260
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 93 ERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNK 152
E L L L N + ++L + L L L HN + SLS L L+ L L+ NK
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 153 LTGKIPRELTKLGNLKILDVSNNDL 177
L+ ++P L L L+++ + N++
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNI 276
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 86 VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKF 145
+P L L RL+ LEL N L P L SL L L H + + L +L+
Sbjct: 171 IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 146 LRLNGNKLTGKIPREL-TKLGNLKILDVSNN 175
L L+ N L +P +L T L L+ + +++N
Sbjct: 231 LNLSHNNLMS-LPHDLFTPLHRLERVHLNHN 260
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 96 QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKL 153
Q L LY+N + P L L L+L N LT +L+ L L L+ N+L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 116 LKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLK 168
L +L SL+L +N +T P + L N+ L LNGNKLT P L NLK
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP-----LANLK 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,551,991
Number of Sequences: 62578
Number of extensions: 269346
Number of successful extensions: 1064
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 246
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)