Query 027850
Match_columns 218
No_of_seqs 299 out of 2103
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 16:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 8.5E-25 1.8E-29 200.5 17.0 170 26-198 27-198 (968)
2 PLN03150 hypothetical protein; 99.8 8.9E-18 1.9E-22 147.0 14.7 153 26-183 370-533 (623)
3 PLN00113 leucine-rich repeat r 99.7 6.9E-17 1.5E-21 148.6 10.4 136 70-205 476-611 (968)
4 KOG0617 Ras suppressor protein 99.7 2.8E-19 6.1E-24 128.5 -5.5 128 68-198 32-160 (264)
5 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.7E-22 120.0 -5.2 128 69-199 56-184 (264)
6 PLN03150 hypothetical protein; 99.5 5.7E-14 1.2E-18 123.2 8.5 112 94-205 419-532 (623)
7 KOG4194 Membrane glycoprotein 99.4 5.7E-15 1.2E-19 123.6 -1.7 130 70-199 270-427 (873)
8 KOG4194 Membrane glycoprotein 99.4 5.8E-14 1.3E-18 117.7 0.1 110 89-198 241-351 (873)
9 KOG0472 Leucine-rich repeat pr 99.3 3.2E-14 6.8E-19 114.5 -3.4 128 71-200 390-540 (565)
10 KOG0472 Leucine-rich repeat pr 99.3 5.8E-14 1.3E-18 113.0 -3.6 123 71-199 185-308 (565)
11 KOG0444 Cytoskeletal regulator 99.3 1.8E-13 3.9E-18 115.9 -1.0 65 133-198 214-278 (1255)
12 KOG0618 Serine/threonine phosp 99.3 8.9E-14 1.9E-18 121.6 -3.3 127 70-200 360-488 (1081)
13 KOG4237 Extracellular matrix p 99.3 2.8E-13 6.2E-18 108.7 -1.8 142 67-208 65-208 (498)
14 KOG0444 Cytoskeletal regulator 99.3 1.4E-13 3E-18 116.6 -4.8 133 70-204 223-378 (1255)
15 PF14580 LRR_9: Leucine-rich r 99.2 4.4E-12 9.6E-17 93.5 3.2 121 70-196 20-148 (175)
16 PF14580 LRR_9: Leucine-rich r 99.2 6.5E-12 1.4E-16 92.6 3.5 108 89-201 15-126 (175)
17 KOG1259 Nischarin, modulator o 99.2 1.7E-12 3.6E-17 101.4 -1.4 125 70-200 285-411 (490)
18 PLN03210 Resistant to P. syrin 99.1 4.4E-10 9.6E-15 105.2 11.1 130 69-203 778-908 (1153)
19 PRK15370 E3 ubiquitin-protein 99.1 3.3E-10 7.1E-15 100.9 8.8 123 62-198 192-314 (754)
20 PLN03210 Resistant to P. syrin 99.1 1.5E-09 3.2E-14 101.7 12.0 126 70-199 590-715 (1153)
21 PF13855 LRR_8: Leucine rich r 99.0 1.1E-10 2.4E-15 71.2 2.5 58 119-176 3-60 (61)
22 PF13855 LRR_8: Leucine rich r 99.0 1.8E-10 3.9E-15 70.3 2.9 59 94-152 2-60 (61)
23 KOG0618 Serine/threonine phosp 99.0 1.1E-11 2.3E-16 108.9 -3.6 138 69-211 310-474 (1081)
24 PRK15370 E3 ubiquitin-protein 99.0 4.9E-10 1.1E-14 99.8 6.4 77 69-154 220-296 (754)
25 PRK15387 E3 ubiquitin-protein 99.0 8.2E-10 1.8E-14 98.2 7.7 34 166-199 423-456 (788)
26 cd00116 LRR_RI Leucine-rich re 99.0 5.6E-11 1.2E-15 96.2 -0.2 37 70-106 82-121 (319)
27 cd00116 LRR_RI Leucine-rich re 99.0 1.2E-10 2.5E-15 94.3 0.4 108 71-178 110-234 (319)
28 KOG0532 Leucine-rich repeat (L 98.9 7.8E-11 1.7E-15 98.9 -1.8 125 70-200 122-246 (722)
29 PRK15387 E3 ubiquitin-protein 98.9 1E-08 2.2E-13 91.4 9.7 111 69-198 222-332 (788)
30 KOG0532 Leucine-rich repeat (L 98.9 2.7E-11 6E-16 101.5 -6.3 119 75-199 104-222 (722)
31 COG4886 Leucine-rich repeat (L 98.8 2.6E-09 5.6E-14 89.3 2.0 102 70-175 117-219 (394)
32 KOG1859 Leucine-rich repeat pr 98.8 1.2E-10 2.6E-15 100.4 -6.3 129 70-204 165-295 (1096)
33 COG4886 Leucine-rich repeat (L 98.7 7.1E-09 1.5E-13 86.6 3.5 125 70-198 141-265 (394)
34 KOG4237 Extracellular matrix p 98.7 7.3E-10 1.6E-14 89.4 -2.3 114 84-199 60-175 (498)
35 KOG1259 Nischarin, modulator o 98.7 2.2E-09 4.8E-14 84.2 -0.7 102 93-199 284-385 (490)
36 PF08263 LRRNT_2: Leucine rich 98.6 5.9E-08 1.3E-12 54.6 3.9 40 27-66 2-43 (43)
37 KOG4658 Apoptotic ATPase [Sign 98.5 3E-08 6.6E-13 89.9 2.1 104 70-174 546-651 (889)
38 KOG4658 Apoptotic ATPase [Sign 98.5 7.7E-08 1.7E-12 87.3 3.8 127 69-198 523-652 (889)
39 KOG3207 Beta-tubulin folding c 98.4 5.6E-08 1.2E-12 79.6 0.1 83 116-199 221-312 (505)
40 KOG0531 Protein phosphatase 1, 98.4 7.2E-08 1.6E-12 81.2 0.1 123 71-199 74-197 (414)
41 PF12799 LRR_4: Leucine Rich r 98.3 5.4E-07 1.2E-11 50.8 3.1 36 142-178 2-37 (44)
42 KOG3207 Beta-tubulin folding c 98.3 1.7E-07 3.7E-12 76.9 1.0 141 58-199 186-337 (505)
43 KOG1644 U2-associated snRNP A' 98.2 2.2E-06 4.8E-11 63.7 5.3 102 70-174 43-149 (233)
44 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.7E-11 49.3 3.1 36 118-154 2-37 (44)
45 KOG4579 Leucine-rich repeat (L 98.2 1.9E-08 4.1E-13 70.3 -6.0 84 92-178 52-136 (177)
46 KOG4579 Leucine-rich repeat (L 98.2 7.6E-08 1.6E-12 67.3 -3.2 108 69-180 53-161 (177)
47 KOG0531 Protein phosphatase 1, 98.2 3.9E-07 8.5E-12 76.7 0.3 104 69-178 95-199 (414)
48 KOG1644 U2-associated snRNP A' 98.1 7.3E-06 1.6E-10 61.0 5.3 122 72-197 22-149 (233)
49 KOG1859 Leucine-rich repeat pr 98.0 1.5E-07 3.3E-12 81.7 -4.9 103 95-203 166-268 (1096)
50 KOG1909 Ran GTPase-activating 98.0 2.1E-06 4.6E-11 68.7 0.5 133 69-202 92-254 (382)
51 PRK15386 type III secretion pr 97.8 0.00019 4.1E-09 59.8 8.9 31 166-198 157-187 (426)
52 KOG1909 Ran GTPase-activating 97.7 6.7E-06 1.4E-10 65.9 -0.9 132 68-199 156-309 (382)
53 KOG3665 ZYG-1-like serine/thre 97.6 1.5E-05 3.3E-10 70.9 0.7 127 70-198 123-260 (699)
54 KOG2739 Leucine-rich acidic nu 97.5 6E-05 1.3E-09 58.2 2.6 66 89-154 61-129 (260)
55 KOG2739 Leucine-rich acidic nu 97.5 6.7E-05 1.5E-09 58.0 2.8 109 85-195 35-150 (260)
56 KOG3665 ZYG-1-like serine/thre 97.2 0.00012 2.7E-09 65.3 1.6 113 67-181 146-266 (699)
57 KOG2123 Uncharacterized conser 97.2 5.6E-06 1.2E-10 64.7 -6.0 100 68-171 18-123 (388)
58 PRK15386 type III secretion pr 97.2 0.0013 2.8E-08 54.9 7.2 107 57-176 61-188 (426)
59 KOG2982 Uncharacterized conser 97.2 6.8E-05 1.5E-09 59.3 -0.9 83 69-152 71-157 (418)
60 KOG2120 SCF ubiquitin ligase, 97.0 3.9E-05 8.5E-10 60.6 -3.3 58 139-198 311-373 (419)
61 PF13306 LRR_5: Leucine rich r 96.9 0.0032 6.9E-08 43.7 5.6 77 71-150 14-90 (129)
62 COG5238 RNA1 Ran GTPase-activa 96.8 0.0019 4.2E-08 50.7 4.0 129 69-198 92-252 (388)
63 KOG2982 Uncharacterized conser 96.8 0.00032 6.9E-09 55.6 -0.2 88 91-178 69-159 (418)
64 PF13306 LRR_5: Leucine rich r 96.7 0.0069 1.5E-07 42.0 6.1 108 86-198 5-113 (129)
65 KOG2120 SCF ubiquitin ligase, 96.4 2.2E-05 4.8E-10 62.0 -8.7 84 70-153 186-272 (419)
66 COG5238 RNA1 Ran GTPase-activa 96.2 0.0037 8E-08 49.2 2.6 114 88-202 87-227 (388)
67 PF00560 LRR_1: Leucine Rich R 96.0 0.0027 5.8E-08 29.8 0.5 10 121-130 4-13 (22)
68 PF00560 LRR_1: Leucine Rich R 95.7 0.004 8.7E-08 29.2 0.5 19 95-114 2-20 (22)
69 KOG2123 Uncharacterized conser 95.6 0.00026 5.7E-09 55.6 -6.0 99 92-194 18-123 (388)
70 KOG0473 Leucine-rich repeat pr 95.3 0.00031 6.8E-09 53.8 -6.3 84 68-154 41-124 (326)
71 KOG0473 Leucine-rich repeat pr 94.7 0.00031 6.8E-09 53.8 -7.7 89 88-179 37-125 (326)
72 smart00369 LRR_TYP Leucine-ric 90.9 0.25 5.4E-06 23.8 2.1 13 142-154 3-15 (26)
73 smart00370 LRR Leucine-rich re 90.9 0.25 5.4E-06 23.8 2.1 13 142-154 3-15 (26)
74 KOG3864 Uncharacterized conser 88.3 0.046 9.9E-07 41.2 -2.6 80 70-149 102-184 (221)
75 PF13516 LRR_6: Leucine Rich r 87.2 0.31 6.7E-06 23.0 0.8 15 165-179 2-16 (24)
76 KOG1947 Leucine rich repeat pr 86.9 0.15 3.2E-06 43.5 -0.7 61 116-176 242-306 (482)
77 smart00365 LRR_SD22 Leucine-ri 84.8 0.77 1.7E-05 22.4 1.5 14 165-178 2-15 (26)
78 PF07172 GRP: Glycine rich pro 81.9 0.71 1.5E-05 30.5 1.0 20 1-20 1-20 (95)
79 smart00364 LRR_BAC Leucine-ric 81.7 1.1 2.4E-05 21.9 1.4 13 118-130 3-15 (26)
80 KOG1947 Leucine rich repeat pr 81.0 0.38 8.1E-06 41.0 -0.7 61 92-152 242-306 (482)
81 KOG3864 Uncharacterized conser 80.7 0.15 3.2E-06 38.5 -2.8 81 94-174 102-185 (221)
82 smart00368 LRR_RI Leucine rich 79.9 1.4 3E-05 21.8 1.4 14 165-178 2-15 (28)
83 KOG3763 mRNA export factor TAP 74.6 1.6 3.5E-05 37.9 1.3 12 116-127 243-254 (585)
84 KOG3763 mRNA export factor TAP 71.8 2.2 4.7E-05 37.2 1.4 80 115-194 216-307 (585)
85 smart00367 LRR_CC Leucine-rich 68.7 3.3 7.1E-05 19.8 1.1 16 188-203 2-17 (26)
86 TIGR00864 PCC polycystin catio 45.3 17 0.00036 38.2 2.5 32 123-154 1-32 (2740)
87 TIGR00864 PCC polycystin catio 39.6 21 0.00046 37.5 2.2 32 99-130 1-32 (2740)
88 KOG4308 LRR-containing protein 33.1 0.97 2.1E-05 39.1 -7.0 129 71-199 146-301 (478)
89 PF10731 Anophelin: Thrombin i 21.4 1.3E+02 0.0028 17.9 2.5 6 1-6 1-6 (65)
90 PF09680 Tiny_TM_bacill: Prote 20.5 1.1E+02 0.0024 14.5 1.7 17 6-22 5-21 (24)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=8.5e-25 Score=200.53 Aligned_cols=170 Identities=32% Similarity=0.606 Sum_probs=131.6
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcceeEeCCCCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcC
Q 027850 26 ANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNL 105 (218)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~~~~v~c~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l 105 (218)
.+.|+.++++++..+.++...+.+|+.. .++|.|.||+|+..++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 4478899999999998777778999754 579999999998778999999999999999999999999999999999999
Q ss_pred CCCCCcccc-cCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCC
Q 027850 106 AGQIPKELG-QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184 (218)
Q Consensus 106 ~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 184 (218)
.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 888886654 788888888888877765553 34566666666666666666666666666666666666666555544
Q ss_pred -CCCCCCCcccccCC
Q 027850 185 -GSFSKFSEESFMNN 198 (218)
Q Consensus 185 -~~l~~L~~L~l~~N 198 (218)
+.+++|++|++++|
T Consensus 184 ~~~l~~L~~L~L~~n 198 (968)
T PLN00113 184 LTNLTSLEFLTLASN 198 (968)
T ss_pred hhhCcCCCeeeccCC
Confidence 55666666666665
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.77 E-value=8.9e-18 Score=147.00 Aligned_cols=153 Identities=35% Similarity=0.554 Sum_probs=127.5
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-----CcceeEeCCC-----CCEEEEEcCCCCCccccCcccCCCCCC
Q 027850 26 ANVEGDALFALRRAVKDPQGVLQSWDPTLVDPC-----TWFHVTCDAD-----NRVTRLDLGNGKLSGNLVPELGKLERL 95 (218)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c-----~~~~v~c~~~-----~~l~~L~l~~~~l~~~~~~~~~~l~~L 95 (218)
...|..+|..+|..+..+.. .+|.. ++| .|.||.|... ..++.|+|++|.+.+.+|..+..+++|
T Consensus 370 ~~~~~~aL~~~k~~~~~~~~--~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 370 LLEEVSALQTLKSSLGLPLR--FGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred CchHHHHHHHHHHhcCCccc--CCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 44688999999998865432 47863 345 7999999532 248999999999999999999999999
Q ss_pred CEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCC-CCCCEEEeeC
Q 027850 96 QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKL-GNLKILDVSN 174 (218)
Q Consensus 96 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L~l~~ 174 (218)
+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++.+++|++|++++|++++.+|..+... .++..+++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999887653 4677888888
Q ss_pred CcccccCCC
Q 027850 175 NDLCGTIPT 183 (218)
Q Consensus 175 N~l~~~~~~ 183 (218)
|...+..|.
T Consensus 525 N~~lc~~p~ 533 (623)
T PLN03150 525 NAGLCGIPG 533 (623)
T ss_pred CccccCCCC
Confidence 865444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=6.9e-17 Score=148.57 Aligned_cols=136 Identities=39% Similarity=0.659 Sum_probs=89.6
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 149 (218)
+++.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCCCCCCC
Q 027850 150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPE 205 (218)
Q Consensus 150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~l~~~~ 205 (218)
+|++++.+|..+..+++|+++++++|.+.+.+|..+.+..+....+.+|+.+|+.+
T Consensus 556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 66666666666666666666666666666666665555556666666666666543
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=2.8e-19 Score=128.46 Aligned_cols=128 Identities=26% Similarity=0.433 Sum_probs=97.6
Q ss_pred CCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEE
Q 027850 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147 (218)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 147 (218)
..++++|.+++|+++ ..|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++.|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 457889999999988 66777888999999999999998 78888999999999999999988 7889999999999999
Q ss_pred ccCCcCC-CCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850 148 LNGNKLT-GKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN 198 (218)
Q Consensus 148 l~~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N 198 (218)
+.+|++. ..+|..|..+..|+.|++++|.+.-.+|..+.+++|+.|.+..|
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 9888775 24555555555555555555555544444455555555555555
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.2e-17 Score=120.04 Aligned_cols=128 Identities=29% Similarity=0.489 Sum_probs=116.8
Q ss_pred CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCC-CCcccCCCCCCCCEEE
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIPPSLSRLSNLKFLR 147 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ 147 (218)
.+++.|++.+|++. .+|.+++.++.|+.|+++-|++. ..|..|+.++.|+.||+.+|++.. .+|..|..+..|+.|+
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 47889999999998 78999999999999999999999 899999999999999999999863 4788888999999999
Q ss_pred ccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP 199 (218)
Q Consensus 148 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~ 199 (218)
++.|.+. .+|..++++++|+.|.+..|.+-..+-+.+.++.|++|.+.+|.
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 9999998 88999999999999999999988666667999999999999993
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=5.7e-14 Score=123.21 Aligned_cols=112 Identities=35% Similarity=0.590 Sum_probs=103.0
Q ss_pred CCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEee
Q 027850 94 RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVS 173 (218)
Q Consensus 94 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 173 (218)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.|.+|..+..+++|+.|++++|++++.+|..+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCC-CC-CCCCCcccccCCCCCCCCC
Q 027850 174 NNDLCGTIPTA-GS-FSKFSEESFMNNPRLEGPE 205 (218)
Q Consensus 174 ~N~l~~~~~~~-~~-l~~L~~L~l~~N~~l~~~~ 205 (218)
+|.++|.+|.. .. ..++..+++.+|+.+|+.+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999876 33 3567789999998888754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.45 E-value=5.7e-15 Score=123.65 Aligned_cols=130 Identities=24% Similarity=0.222 Sum_probs=70.0
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCC---------
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL--------- 140 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l--------- 140 (218)
+++.|+|+.|++...-...+.+++.|+.|++++|.|....++.+...++|+.|++++|+++...+..|..+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 45555666665554444455555566666666666555555555555566666666665554333444444
Q ss_pred ---------------CCCCEEEccCCcCCCCCC---hhccCCCCCCEEEeeCCcccccCCCC-CCCCCCCcccccCCC
Q 027850 141 ---------------SNLKFLRLNGNKLTGKIP---RELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNP 199 (218)
Q Consensus 141 ---------------~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N~ 199 (218)
++|++||+++|.+.+.+. ..|..+++|+.|++.+|++....... ..+++|++|++.+|+
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 445555555554443222 23445566666666666665333322 556666666666664
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.38 E-value=5.8e-14 Score=117.69 Aligned_cols=110 Identities=24% Similarity=0.191 Sum_probs=57.9
Q ss_pred cCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCC
Q 027850 89 LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLK 168 (218)
Q Consensus 89 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 168 (218)
|.++++|+.|.+..|.|.......|..+.++++|+++.|+++..-..++.++..|+.|++++|.|....++.|...++|+
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 34444444444444444433344455555555566666655533334555555666666666666555555555556666
Q ss_pred EEEeeCCcccccCCCC-CCCCCCCcccccCC
Q 027850 169 ILDVSNNDLCGTIPTA-GSFSKFSEESFMNN 198 (218)
Q Consensus 169 ~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N 198 (218)
+|+|++|+++...+.. ..+..|++|.+++|
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhccccc
Confidence 6666666665544433 34444455555544
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.35 E-value=3.2e-14 Score=114.52 Aligned_cols=128 Identities=30% Similarity=0.481 Sum_probs=103.2
Q ss_pred EEEEEcCCCCCc-----------------------cccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCC
Q 027850 71 VTRLDLGNGKLS-----------------------GNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127 (218)
Q Consensus 71 l~~L~l~~~~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 127 (218)
|+.++++.|++. +-.|..++.+++|..|++++|.+. .+|..+..+-.||.++++.|
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence 778888887764 122334566778888888888777 77877888888888888888
Q ss_pred cCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCC
Q 027850 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPR 200 (218)
Q Consensus 128 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~ 200 (218)
++. .+|..+..+..++++-.++|++....|+.+..+.+|.+||+.+|.+...+|..+++++|++|.+.|||+
T Consensus 469 rFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 469 RFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 887 778777777777777777788875666669999999999999999998888889999999999999964
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.31 E-value=5.8e-14 Score=113.01 Aligned_cols=123 Identities=33% Similarity=0.473 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccC-CCCCCCCEEEcc
Q 027850 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSL-SRLSNLKFLRLN 149 (218)
Q Consensus 71 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~ 149 (218)
+++||.-.|-+. .+|+.++.+.+|..|++..|++. .+| .|.++..|..++++.|.++ .+|... ++++++..||+.
T Consensus 185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 344444444333 45555666666666666666666 555 4666666666666666666 444433 367777777888
Q ss_pred CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850 150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP 199 (218)
Q Consensus 150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~ 199 (218)
.|+++ ++|+.+..+++|.+||+++|.+++.+++.+++ .|+.|.+.|||
T Consensus 261 dNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 261 DNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 88877 77777777777888888888887777666777 77777777776
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.31 E-value=1.8e-13 Score=115.93 Aligned_cols=65 Identities=34% Similarity=0.479 Sum_probs=39.8
Q ss_pred CcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850 133 IPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN 198 (218)
Q Consensus 133 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N 198 (218)
+|.++-.+.+|..+|++.|.+. .+|+.+.++++|+.|+|++|+|+..-...+.+.+|+.|+++.|
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 3444445555566666666665 5666666777777777777776654433355556666666666
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.30 E-value=8.9e-14 Score=121.61 Aligned_cols=127 Identities=33% Similarity=0.492 Sum_probs=111.9
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCC-cccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 148 (218)
.++.|.+.+|.+++...+.+.++.+|+.|+|++|++. .+| ..+.++..|+.|++++|+++ .+|+.+..++.|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 5788899999999998899999999999999999999 555 55778999999999999999 88999999999999999
Q ss_pred cCCcCCCCCChhccCCCCCCEEEeeCCcccccC-CCCCCCCCCCcccccCCCC
Q 027850 149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTI-PTAGSFSKFSEESFMNNPR 200 (218)
Q Consensus 149 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-~~~~~l~~L~~L~l~~N~~ 200 (218)
.+|++. .+| .+..++.|+.+|++.|+++... +.....++|++|+++||++
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999998 777 7999999999999999998664 3333338999999999964
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=2.8e-13 Score=108.75 Aligned_cols=142 Identities=24% Similarity=0.278 Sum_probs=123.2
Q ss_pred CCCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccC-CcCCCCCcccCCCCCCCCE
Q 027850 67 ADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH-NNLTGPIPPSLSRLSNLKF 145 (218)
Q Consensus 67 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~ 145 (218)
.+...+.|+|..|+|+...+..|..+++|+.|||++|.|+.+-|++|.+++++..|.+.+ |+|+......|.++..++.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 356789999999999988888999999999999999999988999999999988887666 9999555568999999999
Q ss_pred EEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCC-CCCCCCCcccccCCCCCCCCCccC
Q 027850 146 LRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNPRLEGPELMG 208 (218)
Q Consensus 146 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N~~l~~~~~~~ 208 (218)
|.+.-|++.-...+.|..+++|..|.+-+|.+....... ..+.+++.+.+..||..+.+.+-+
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 999999998777888999999999999999988554433 778899999999999888776543
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.25 E-value=1.4e-13 Score=116.56 Aligned_cols=133 Identities=26% Similarity=0.340 Sum_probs=82.4
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCC----------------------CCCcccccCCCCCEEEccCC
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG----------------------QIPKELGQLKSLISLDLYHN 127 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~p~~~~~l~~L~~L~l~~n 127 (218)
++..+|++.|.+. ..|+.+.++++|+.|+|++|.|+. .+|+.++.++.|+.|.+.+|
T Consensus 223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred hhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC
Confidence 4555555555555 445555555555555555555441 45556666666666666666
Q ss_pred cCCC-CCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCCCCCC
Q 027850 128 NLTG-PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGP 204 (218)
Q Consensus 128 ~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~l~~~ 204 (218)
++.. .+|..++.+..|+.+..++|.+. .+|+.+..+..|+.|.|+.|.+-..+..+.-++.|+.|++..||.+--+
T Consensus 302 kL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCC
Confidence 5542 25666666666666666666666 6677777777777777777777644444466777788888887766544
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=4.4e-12 Score=93.47 Aligned_cols=121 Identities=26% Similarity=0.409 Sum_probs=49.3
Q ss_pred CEEEEEcCCCCCccccCcccC-CCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccC-CCCCCCCEEE
Q 027850 70 RVTRLDLGNGKLSGNLVPELG-KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSL-SRLSNLKFLR 147 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ 147 (218)
++++|+|.+|.|+.. +.+. .+.+|+.|++++|.|. .++ .+..++.|+.|++++|+++ .+.+.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 578899999988742 2344 5788999999999998 444 4778899999999999998 444434 3578999999
Q ss_pred ccCCcCCCC-CChhccCCCCCCEEEeeCCcccccCCCC-----CCCCCCCccccc
Q 027850 148 LNGNKLTGK-IPRELTKLGNLKILDVSNNDLCGTIPTA-----GSFSKFSEESFM 196 (218)
Q Consensus 148 l~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~l~~L~~L~l~ 196 (218)
+++|++... .-..+..+++|++|++.+|.++.. +.. ..+++|+.||..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 999998732 224577889999999999988754 321 567888887743
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=6.5e-12 Score=92.57 Aligned_cols=108 Identities=32% Similarity=0.418 Sum_probs=41.2
Q ss_pred cCCCCCCCEEEccCCcCCCCCCcccc-cCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhc-cCCCC
Q 027850 89 LGKLERLQYLELYMNNLAGQIPKELG-QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPREL-TKLGN 166 (218)
Q Consensus 89 ~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~ 166 (218)
+.+...+++|+|.+|.|+ .+. .+. .+.+|+.|++++|.++. + +.+..+++|++|++++|+++ .+.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 445567899999999999 443 355 57899999999999994 4 45888999999999999999 455444 46899
Q ss_pred CCEEEeeCCcccccCC--CCCCCCCCCcccccCCCCC
Q 027850 167 LKILDVSNNDLCGTIP--TAGSFSKFSEESFMNNPRL 201 (218)
Q Consensus 167 L~~L~l~~N~l~~~~~--~~~~l~~L~~L~l~~N~~l 201 (218)
|++|++++|+|...-. ....+++|+.|++.+||.-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999999999986432 2277899999999999854
No 17
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=1.7e-12 Score=101.38 Aligned_cols=125 Identities=27% Similarity=0.308 Sum_probs=103.2
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 149 (218)
.++.+||++|.|+ .+.++..-.|.++.|++++|.+. .+. .+..+++|+.||+++|.++ .+-.+--.+.++++|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4678999999988 67788888899999999999998 443 3788999999999999988 555555677889999999
Q ss_pred CCcCCCCCChhccCCCCCCEEEeeCCcccccC--CCCCCCCCCCcccccCCCC
Q 027850 150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTI--PTAGSFSKFSEESFMNNPR 200 (218)
Q Consensus 150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~--~~~~~l~~L~~L~l~~N~~ 200 (218)
+|.+. . -..+.++.+|.+||+++|+|...- -.+++++.|+++.+.+||.
T Consensus 361 ~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 99986 2 235788899999999999988543 3348999999999999974
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.12 E-value=4.4e-10 Score=105.24 Aligned_cols=130 Identities=24% Similarity=0.279 Sum_probs=106.9
Q ss_pred CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 148 (218)
.+++.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|++|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 478899999998777889999999999999999986555777665 7899999999997654455543 368999999
Q ss_pred cCCcCCCCCChhccCCCCCCEEEeeC-CcccccCCCCCCCCCCCcccccCCCCCCC
Q 027850 149 NGNKLTGKIPRELTKLGNLKILDVSN-NDLCGTIPTAGSFSKFSEESFMNNPRLEG 203 (218)
Q Consensus 149 ~~n~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~~~~~~l~~L~~L~l~~N~~l~~ 203 (218)
++|.++ .+|..+..+++|++|++++ +++.+.++....+++|+.+++++|+.+..
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 999998 7899999999999999998 56665544457889999999999876654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=3.3e-10 Score=100.86 Aligned_cols=123 Identities=26% Similarity=0.353 Sum_probs=78.9
Q ss_pred eeEeCCCCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCC
Q 027850 62 HVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLS 141 (218)
Q Consensus 62 ~v~c~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 141 (218)
.++...+.+++.|++++|+++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .
T Consensus 192 sLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s 262 (754)
T PRK15370 192 TIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--S 262 (754)
T ss_pred cCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--C
Confidence 334333457888888888888 4555443 57888888888887 5665443 46788888888777 5665543 4
Q ss_pred CCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850 142 NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN 198 (218)
Q Consensus 142 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N 198 (218)
+|++|++++|+++ .+|..+. ++|++|++++|++++.+.... ++|+.|++++|
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence 6778888887777 4565443 467777777777775432211 23444444444
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.06 E-value=1.5e-09 Score=101.75 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=70.7
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 149 (218)
+++.|++.++.+. .+|..+ ...+|+.|++.+|.+. .++..+..+++|+.++++++.....+|. +..+++|++|+++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 3555555555544 344444 3456666666666665 4555555666666666666543334443 5556666666666
Q ss_pred CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850 150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP 199 (218)
Q Consensus 150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~ 199 (218)
+|.....+|..+..+++|+.|++++|...+.+|....+++|+.|++++|.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 66544456666666666666666665433344433345556666665553
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=1.1e-10 Score=71.23 Aligned_cols=58 Identities=48% Similarity=0.618 Sum_probs=24.4
Q ss_pred CCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCc
Q 027850 119 LISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176 (218)
Q Consensus 119 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 176 (218)
|++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444442222334444444444444444443333344444444444444443
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=1.8e-10 Score=70.28 Aligned_cols=59 Identities=39% Similarity=0.568 Sum_probs=30.7
Q ss_pred CCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCc
Q 027850 94 RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNK 152 (218)
Q Consensus 94 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 152 (218)
+|++|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333445555555555555555553334455555555555555554
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.02 E-value=1.1e-11 Score=108.86 Aligned_cols=138 Identities=29% Similarity=0.374 Sum_probs=110.4
Q ss_pred CCEEEEEcCCCCCccccCccc--------------------------CCCCCCCEEEccCCcCCCCCCcccccCCCCCEE
Q 027850 69 NRVTRLDLGNGKLSGNLVPEL--------------------------GKLERLQYLELYMNNLAGQIPKELGQLKSLISL 122 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~~--------------------------~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 122 (218)
..++.|+|..|++. .+|+.+ ..++.|+.|.+.+|.++...=+.+.++++|+.|
T Consensus 310 ~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL 388 (1081)
T ss_pred ceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence 46899999999886 333221 123456777888998887665568899999999
Q ss_pred EccCCcCCCCCc-ccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCCC
Q 027850 123 DLYHNNLTGPIP-PSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRL 201 (218)
Q Consensus 123 ~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~l 201 (218)
++++|++. .+| ..+.++..|++|++++|+++ .+|..+..++.|++|...+|++..+ |+...++.|+.+|++.| .+
T Consensus 389 hLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~~~l~qL~~lDlS~N-~L 464 (1081)
T KOG0618|consen 389 HLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-PELAQLPQLKVLDLSCN-NL 464 (1081)
T ss_pred eecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-hhhhhcCcceEEecccc-hh
Confidence 99999999 566 46788999999999999999 8899999999999999999999854 58889999999999999 55
Q ss_pred CCCCccCccc
Q 027850 202 EGPELMGFVR 211 (218)
Q Consensus 202 ~~~~~~~~~~ 211 (218)
+-..+....|
T Consensus 465 ~~~~l~~~~p 474 (1081)
T KOG0618|consen 465 SEVTLPEALP 474 (1081)
T ss_pred hhhhhhhhCC
Confidence 5444444444
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.02 E-value=4.9e-10 Score=99.75 Aligned_cols=77 Identities=27% Similarity=0.567 Sum_probs=37.9
Q ss_pred CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 148 (218)
.+++.|++++|+++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|++|++
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence 46777777777766 3444332 34555555555555 3443332 34555555555544 3343332 24444444
Q ss_pred cCCcCC
Q 027850 149 NGNKLT 154 (218)
Q Consensus 149 ~~n~l~ 154 (218)
++|+++
T Consensus 291 s~N~Lt 296 (754)
T PRK15370 291 YDNSIR 296 (754)
T ss_pred CCCccc
Confidence 444444
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.01 E-value=8.2e-10 Score=98.21 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=19.4
Q ss_pred CCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850 166 NLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP 199 (218)
Q Consensus 166 ~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~ 199 (218)
+|+.|++++|+++..+.....+++|+.+++++|+
T Consensus 423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 3445555555555322223567777778888774
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=5.6e-11 Score=96.20 Aligned_cols=37 Identities=35% Similarity=0.372 Sum_probs=16.3
Q ss_pred CEEEEEcCCCCCccccCcccCCCCC---CCEEEccCCcCC
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLER---LQYLELYMNNLA 106 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~---L~~L~l~~n~l~ 106 (218)
+++.|++++|.+.+..+..+..+.. |+.|++++|.+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 4555555555544332322222222 555555555444
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=1.2e-10 Score=94.32 Aligned_cols=108 Identities=31% Similarity=0.450 Sum_probs=44.7
Q ss_pred EEEEEcCCCCCcc----ccCcccCCC-CCCCEEEccCCcCCCC----CCcccccCCCCCEEEccCCcCCCC----CcccC
Q 027850 71 VTRLDLGNGKLSG----NLVPELGKL-ERLQYLELYMNNLAGQ----IPKELGQLKSLISLDLYHNNLTGP----IPPSL 137 (218)
Q Consensus 71 l~~L~l~~~~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~ 137 (218)
++.|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 5555555555441 111223333 4555555555554421 112233344455555555544421 11222
Q ss_pred CCCCCCCEEEccCCcCCCC----CChhccCCCCCCEEEeeCCccc
Q 027850 138 SRLSNLKFLRLNGNKLTGK----IPRELTKLGNLKILDVSNNDLC 178 (218)
Q Consensus 138 ~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 178 (218)
..+++|++|++++|.+++. +...+..+++|++|++++|.++
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 3334455555555544321 1122333444555555544444
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=7.8e-11 Score=98.87 Aligned_cols=125 Identities=32% Similarity=0.440 Sum_probs=93.7
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 149 (218)
.++.+|++.|++. .+|..++.++ |+.|-+++|+++ .+|..++.+.+|..||.+.|.+. .+|..++.+.+|+.|.+.
T Consensus 122 ~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 122 ALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred HHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence 4566788888777 5566565554 778888888887 77777777788888888888887 677777788888888888
Q ss_pred CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCC
Q 027850 150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPR 200 (218)
Q Consensus 150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~ 200 (218)
.|++. .+|+.+..+ .|..||++.|+++..+-.+..|+.|++|-+.+||.
T Consensus 198 Rn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 198 RNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 88877 666666644 47778888888885555557788888888888863
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.88 E-value=1e-08 Score=91.39 Aligned_cols=111 Identities=30% Similarity=0.347 Sum_probs=75.1
Q ss_pred CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 148 (218)
.+++.|++.+|+++. +|. ..++|++|++++|.++ .+|.. .++|+.|++++|.++ .+|... .+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence 467888888888773 443 2477888888888888 45542 357788888888877 455432 46778888
Q ss_pred cCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850 149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN 198 (218)
Q Consensus 149 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N 198 (218)
++|+++ .+|. ..++|+.|++++|++++.+. . ..+|+.|++++|
T Consensus 290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N 332 (788)
T PRK15387 290 FGNQLT-SLPV---LPPGLQELSVSDNQLASLPA-L--PSELCKLWAYNN 332 (788)
T ss_pred cCCccc-cccc---cccccceeECCCCccccCCC-C--cccccccccccC
Confidence 888887 4554 24678999999998886432 1 123444555554
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=2.7e-11 Score=101.51 Aligned_cols=119 Identities=27% Similarity=0.374 Sum_probs=68.0
Q ss_pred EcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCC
Q 027850 75 DLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT 154 (218)
Q Consensus 75 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 154 (218)
.+.+|.+. .+|..+.++..|++++++.|+++ .+|..++.++ |+.|-+++|+++ .+|+.++....|..|+.+.|.+.
T Consensus 104 iLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 104 ILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred HHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh
Confidence 33334443 34555555566666666666665 5555554442 555566666665 55555665566666666666665
Q ss_pred CCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850 155 GKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP 199 (218)
Q Consensus 155 ~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~ 199 (218)
.+|..++.+.+|+.|.+..|++...+++...+ .|..||++.|+
T Consensus 180 -slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 180 -SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred -hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc
Confidence 55555666666666666666666555554422 46666776663
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=2.6e-09 Score=89.29 Aligned_cols=102 Identities=41% Similarity=0.652 Sum_probs=54.6
Q ss_pred CEEEEEcCCCCCccccCcccCCCC-CCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLE-RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 148 (218)
.++.+++.++.+. .+++....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|......+.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 4666666666665 3444444443 6666666666666 44444556666666666666666 44444335555555555
Q ss_pred cCCcCCCCCChhccCCCCCCEEEeeCC
Q 027850 149 NGNKLTGKIPRELTKLGNLKILDVSNN 175 (218)
Q Consensus 149 ~~n~l~~~~p~~~~~l~~L~~L~l~~N 175 (218)
++|++. .+|........|+++.+++|
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 555555 33433333333444444444
No 32
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.76 E-value=1.2e-10 Score=100.35 Aligned_cols=129 Identities=27% Similarity=0.249 Sum_probs=101.6
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 149 (218)
.+...+.++|.+. ....++.-++.++.|+|++|++.... .+..+++|.+||+++|.++ .+|..-..-.+|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4666788888877 56677888899999999999998433 6888999999999999998 666422222359999999
Q ss_pred CCcCCCCCChhccCCCCCCEEEeeCCcccccCC--CCCCCCCCCcccccCCCCCCCC
Q 027850 150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP--TAGSFSKFSEESFMNNPRLEGP 204 (218)
Q Consensus 150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~--~~~~l~~L~~L~l~~N~~l~~~ 204 (218)
+|.++.. ..+.++++|+.||+++|-+.+... ..+.+..|+.|.+.|||.-|.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9998722 347899999999999998886533 2378889999999999865543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=7.1e-09 Score=86.65 Aligned_cols=125 Identities=34% Similarity=0.519 Sum_probs=68.3
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 149 (218)
+++.|++++|.+. .++..+..+++|+.|++++|.+. .+|......+.|+.|++++|+++ .+|........|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 4566666666655 33344555666666666666666 44444445566666666666666 445444344446666666
Q ss_pred CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850 150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN 198 (218)
Q Consensus 150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N 198 (218)
+|.+. ..+..+..+.++..+.+.+|++...+.....+++++.|++++|
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 66433 3444455555666666656655533222255555666666666
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=7.3e-10 Score=89.45 Aligned_cols=114 Identities=25% Similarity=0.262 Sum_probs=97.0
Q ss_pred ccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccC-CcCCCCCChhcc
Q 027850 84 NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG-NKLTGKIPRELT 162 (218)
Q Consensus 84 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~ 162 (218)
++|..+. +.-..++|..|+|+...|.+|+.+++|+.||+++|.|+..-|+.|.+++.+.+|-+.+ |+|+......|+
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 4444432 3567899999999977778899999999999999999988899999999988877766 899966667899
Q ss_pred CCCCCCEEEeeCCcccccCCCC-CCCCCCCcccccCCC
Q 027850 163 KLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNP 199 (218)
Q Consensus 163 ~l~~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N~ 199 (218)
++.+|+.|.+.-|++....... ..++++..|.+..|.
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh
Confidence 9999999999999998777666 889999999999984
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.2e-09 Score=84.16 Aligned_cols=102 Identities=26% Similarity=0.345 Sum_probs=84.5
Q ss_pred CCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEe
Q 027850 93 ERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDV 172 (218)
Q Consensus 93 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 172 (218)
..|+.+|+++|.|+ .+.....-.+.++.|++++|.+. .+ +.+..+++|++||+++|.++ .+..+-.++.+.++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 45889999999999 67777888899999999999988 33 34888899999999999988 66666678889999999
Q ss_pred eCCcccccCCCCCCCCCCCcccccCCC
Q 027850 173 SNNDLCGTIPTAGSFSKFSEESFMNNP 199 (218)
Q Consensus 173 ~~N~l~~~~~~~~~l~~L~~L~l~~N~ 199 (218)
++|.+. .....+.+.+|..|++++|.
T Consensus 360 a~N~iE-~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 360 AQNKIE-TLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhhhHh-hhhhhHhhhhheeccccccc
Confidence 999876 33444778899999999993
No 36
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.62 E-value=5.9e-08 Score=54.59 Aligned_cols=40 Identities=50% Similarity=1.128 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHhcC-CCCCCCCCCCCCC-CCCCCcceeEeC
Q 027850 27 NVEGDALFALRRAVK-DPQGVLQSWDPTL-VDPCTWFHVTCD 66 (218)
Q Consensus 27 ~~~~~~l~~~~~~~~-~~~~~l~~w~~~~-~~~c~~~~v~c~ 66 (218)
+.|+++|++||.++. ++...+.+|+... .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 468999999999998 4667899998764 799999999995
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=3e-08 Score=89.87 Aligned_cols=104 Identities=26% Similarity=0.358 Sum_probs=58.3
Q ss_pred CEEEEEcCCCC--CccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEE
Q 027850 70 RVTRLDLGNGK--LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147 (218)
Q Consensus 70 ~l~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 147 (218)
.++.|-+..|. +.......|..++.|+.||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 35555555543 33222233555666666666665554556666666666666666666666 5666666666666666
Q ss_pred ccCCcCCCCCChhccCCCCCCEEEeeC
Q 027850 148 LNGNKLTGKIPRELTKLGNLKILDVSN 174 (218)
Q Consensus 148 l~~n~l~~~~p~~~~~l~~L~~L~l~~ 174 (218)
+..+.....+|.....+.+|++|.+-.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhcccccEEEeec
Confidence 665554434444445566666666544
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.51 E-value=7.7e-08 Score=87.31 Aligned_cols=127 Identities=24% Similarity=0.309 Sum_probs=102.5
Q ss_pred CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCc--CCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEE
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNN--LAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFL 146 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 146 (218)
..++++.+-+|.+. .++... ..+.|++|-+..|. +.......|..++.|+.||+++|.--+.+|+.++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 35677777777765 333332 34479999999986 553444558889999999999988767899999999999999
Q ss_pred EccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCC-CCCCCCCcccccCC
Q 027850 147 RLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNN 198 (218)
Q Consensus 147 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N 198 (218)
+++++.+. .+|..+.+++.|.+|++..+.-...++.. ..+++|++|.+...
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 99999999 89999999999999999988766566666 66999999988654
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.6e-08 Score=79.59 Aligned_cols=83 Identities=24% Similarity=0.258 Sum_probs=42.3
Q ss_pred CCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCC--hhccCCCCCCEEEeeCCccccc-CCCC------CC
Q 027850 116 LKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIP--RELTKLGNLKILDVSNNDLCGT-IPTA------GS 186 (218)
Q Consensus 116 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~-~~~~------~~ 186 (218)
+++|+.|++..|...........-+..|++|++++|++. ..+ ...+.++.|+.|+++.+.+... .|.. ..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 445555555555321121222233445666666666654 222 3345666666666666665543 1211 34
Q ss_pred CCCCCcccccCCC
Q 027850 187 FSKFSEESFMNNP 199 (218)
Q Consensus 187 l~~L~~L~l~~N~ 199 (218)
+++|+.|++..|+
T Consensus 300 f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 300 FPKLEYLNISENN 312 (505)
T ss_pred cccceeeecccCc
Confidence 5667777776663
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.37 E-value=7.2e-08 Score=81.18 Aligned_cols=123 Identities=32% Similarity=0.437 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccC
Q 027850 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150 (218)
Q Consensus 71 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 150 (218)
+..+++..|.+.. +-..+..+.+|+.+++.+|.|. .+...+..+++|++|++++|.|+.. ..+..++.|+.|++.+
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence 3444455555442 2233555666666667666666 3333255566667777777766633 2344555566667777
Q ss_pred CcCCCCCChhccCCCCCCEEEeeCCcccccCCC-CCCCCCCCcccccCCC
Q 027850 151 NKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT-AGSFSKFSEESFMNNP 199 (218)
Q Consensus 151 n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~l~~L~~L~l~~N~ 199 (218)
|.++ .+. .+..++.|+.+++++|.+...-+. ...+.+++.+.+.+|.
T Consensus 150 N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 150 NLIS-DIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred Ccch-hcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 7665 222 244466666666666666643331 3445566666666663
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.33 E-value=5.4e-07 Score=50.84 Aligned_cols=36 Identities=44% Similarity=0.698 Sum_probs=17.5
Q ss_pred CCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCccc
Q 027850 142 NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLC 178 (218)
Q Consensus 142 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 178 (218)
+|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 34444555555555555555544
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.7e-07 Score=76.87 Aligned_cols=141 Identities=20% Similarity=0.121 Sum_probs=93.8
Q ss_pred CCcceeEeCCCCCEEEEEcCCCCCcccc-CcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCc--
Q 027850 58 CTWFHVTCDADNRVTRLDLGNGKLSGNL-VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIP-- 134 (218)
Q Consensus 58 c~~~~v~c~~~~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-- 134 (218)
|.|....-....+++.|.++.|+++..- ......+|+|+.|++..|...........-+..|+.||+++|.+.. .+
T Consensus 186 ~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~ 264 (505)
T KOG3207|consen 186 NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQG 264 (505)
T ss_pred CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccc
Confidence 3444444444456777777777765321 1223456788888888884322333334457889999999999873 33
Q ss_pred ccCCCCCCCCEEEccCCcCCCC-CChh-----ccCCCCCCEEEeeCCcccccC--CCCCCCCCCCcccccCCC
Q 027850 135 PSLSRLSNLKFLRLNGNKLTGK-IPRE-----LTKLGNLKILDVSNNDLCGTI--PTAGSFSKFSEESFMNNP 199 (218)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~l~~~-~p~~-----~~~l~~L~~L~l~~N~l~~~~--~~~~~l~~L~~L~l~~N~ 199 (218)
...+.++.|..|+++.+.+... .|+. ...+++|++|++..|++.... -....+.+|++|.+..|+
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 4567889999999999988742 2222 356889999999999986332 223567788888888873
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.24 E-value=2.2e-06 Score=63.73 Aligned_cols=102 Identities=28% Similarity=0.335 Sum_probs=73.7
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCc--ccCCCCCCCCEEE
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIP--PSLSRLSNLKFLR 147 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~ 147 (218)
....+||++|.+.. .+.|..++.|++|.+.+|.|+.+.|.--..+++|..|.+.+|.+. .+. +.+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 45678888888763 345777888889999999988666655556778888888888876 332 3466778888888
Q ss_pred ccCCcCCCCC---ChhccCCCCCCEEEeeC
Q 027850 148 LNGNKLTGKI---PRELTKLGNLKILDVSN 174 (218)
Q Consensus 148 l~~n~l~~~~---p~~~~~l~~L~~L~l~~ 174 (218)
+-+|.++..- -..+..+++|+.||.+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8888876221 12356788888888764
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.3e-06 Score=49.31 Aligned_cols=36 Identities=44% Similarity=0.708 Sum_probs=17.5
Q ss_pred CCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCC
Q 027850 118 SLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT 154 (218)
Q Consensus 118 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 154 (218)
+|++|++++|+++ .+|+.+..+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 34444555555555555555554
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=1.9e-08 Score=70.27 Aligned_cols=84 Identities=26% Similarity=0.402 Sum_probs=45.6
Q ss_pred CCCCCEEEccCCcCCCCCCcccc-cCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEE
Q 027850 92 LERLQYLELYMNNLAGQIPKELG-QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKIL 170 (218)
Q Consensus 92 l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 170 (218)
...|+..++++|.+. ..|+.|. .++.++.+++++|.+. .+|..+..++.|+.++++.|.+. ..|+.+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 344455555555555 3343333 2345555666666655 45555556666666666666655 445555555556666
Q ss_pred EeeCCccc
Q 027850 171 DVSNNDLC 178 (218)
Q Consensus 171 ~l~~N~l~ 178 (218)
+..+|...
T Consensus 129 ds~~na~~ 136 (177)
T KOG4579|consen 129 DSPENARA 136 (177)
T ss_pred cCCCCccc
Confidence 65555544
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=7.6e-08 Score=67.29 Aligned_cols=108 Identities=22% Similarity=0.331 Sum_probs=83.6
Q ss_pred CCEEEEEcCCCCCccccCcccC-CCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEE
Q 027850 69 NRVTRLDLGNGKLSGNLVPELG-KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 147 (218)
-+++.+++++|.+. .+|+.|. +++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 47899999999998 5565554 5678999999999999 88988999999999999999999 7788788899999999
Q ss_pred ccCCcCCCCCChhccCCCCCCEEEeeCCccccc
Q 027850 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180 (218)
Q Consensus 148 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 180 (218)
..+|.+. .+|..+-.-...-..++.++.+.+.
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence 9999887 5554433222233334455555443
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=3.9e-07 Score=76.74 Aligned_cols=104 Identities=29% Similarity=0.338 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 148 (218)
.+++.+++.+|.|... ...+..+++|++|++++|.|+...+ +..++.|+.|++++|.+... ..+..+..|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 5789999999999843 3336778999999999999994433 66778899999999999843 45666889999999
Q ss_pred cCCcCCCCCC-hhccCCCCCCEEEeeCCccc
Q 027850 149 NGNKLTGKIP-RELTKLGNLKILDVSNNDLC 178 (218)
Q Consensus 149 ~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~ 178 (218)
++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 9999884433 1 467778888888888765
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=7.3e-06 Score=61.04 Aligned_cols=122 Identities=25% Similarity=0.227 Sum_probs=84.0
Q ss_pred EEEEcCCCCCccccCcccC-CCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccC
Q 027850 72 TRLDLGNGKLSGNLVPELG-KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150 (218)
Q Consensus 72 ~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 150 (218)
+++++.+.++..... ++ .+.+...+|+++|.+. .++ .|..++.|..|.+.+|+|+..-|..-.-+++|..|.+.+
T Consensus 22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhh--ccccccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 456666665542111 11 2356778899999887 333 477888999999999999866665555667899999999
Q ss_pred CcCCCCC-ChhccCCCCCCEEEeeCCcccccCCC----CCCCCCCCcccccC
Q 027850 151 NKLTGKI-PRELTKLGNLKILDVSNNDLCGTIPT----AGSFSKFSEESFMN 197 (218)
Q Consensus 151 n~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~~~----~~~l~~L~~L~l~~ 197 (218)
|++.... -..+..+++|++|.+-+|.++...-- ...+++|+.||+++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9886211 13367788999999988887643221 15678888888765
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.04 E-value=1.5e-07 Score=81.74 Aligned_cols=103 Identities=28% Similarity=0.326 Sum_probs=80.0
Q ss_pred CCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeC
Q 027850 95 LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSN 174 (218)
Q Consensus 95 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 174 (218)
|...+.++|.+. .....+.-++.++.|++++|+++.. +.+..+++|++||+++|.+. .+|..-..--.|..|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 556677777777 5666777889999999999999844 47889999999999999998 5564322223499999999
Q ss_pred CcccccCCCCCCCCCCCcccccCCCCCCC
Q 027850 175 NDLCGTIPTAGSFSKFSEESFMNNPRLEG 203 (218)
Q Consensus 175 N~l~~~~~~~~~l~~L~~L~l~~N~~l~~ 203 (218)
|.++. .-.+.++.+|+.||+++| .+.+
T Consensus 242 N~l~t-L~gie~LksL~~LDlsyN-ll~~ 268 (1096)
T KOG1859|consen 242 NALTT-LRGIENLKSLYGLDLSYN-LLSE 268 (1096)
T ss_pred cHHHh-hhhHHhhhhhhccchhHh-hhhc
Confidence 99873 344577889999999999 5544
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.95 E-value=2.1e-06 Score=68.65 Aligned_cols=133 Identities=19% Similarity=0.226 Sum_probs=87.0
Q ss_pred CCEEEEEcCCCCCccccCcc----cCCCCCCCEEEccCCcCCCCCC-------------cccccCCCCCEEEccCCcCCC
Q 027850 69 NRVTRLDLGNGKLSGNLVPE----LGKLERLQYLELYMNNLAGQIP-------------KELGQLKSLISLDLYHNNLTG 131 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~p-------------~~~~~l~~L~~L~l~~n~l~~ 131 (218)
++++.||||.|.+....++. +.....|+.|.|.+|.+...-- .....-+.|+.+..++|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 48999999999886443332 3456788888898888762111 113345778888888888763
Q ss_pred C----CcccCCCCCCCCEEEccCCcCCCC----CChhccCCCCCCEEEeeCCcccccCC-----CCCCCCCCCcccccCC
Q 027850 132 P----IPPSLSRLSNLKFLRLNGNKLTGK----IPRELTKLGNLKILDVSNNDLCGTIP-----TAGSFSKFSEESFMNN 198 (218)
Q Consensus 132 ~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~l~~L~~L~l~~N 198 (218)
. +...|...+.|+.+.+..|.+... +-..+..+++|+.|||.+|-++.... ....++.|++|+++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3 123456667888888888877521 12346677888888888887763321 1155667777877777
Q ss_pred CCCC
Q 027850 199 PRLE 202 (218)
Q Consensus 199 ~~l~ 202 (218)
.+.
T Consensus 252 -ll~ 254 (382)
T KOG1909|consen 252 -LLE 254 (382)
T ss_pred -ccc
Confidence 443
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.00019 Score=59.77 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=14.2
Q ss_pred CCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850 166 NLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN 198 (218)
Q Consensus 166 ~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N 198 (218)
+|++|++++|.....++.. ..+|+.|+++.|
T Consensus 157 SLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNIILPEKL--PESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence 5666666665543211111 135555555443
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.67 E-value=6.7e-06 Score=65.88 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=96.2
Q ss_pred CCCEEEEEcCCCCCccc----cCcccCCCCCCCEEEccCCcCCCC----CCcccccCCCCCEEEccCCcCCCC----Ccc
Q 027850 68 DNRVTRLDLGNGKLSGN----LVPELGKLERLQYLELYMNNLAGQ----IPKELGQLKSLISLDLYHNNLTGP----IPP 135 (218)
Q Consensus 68 ~~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~ 135 (218)
...++++....|++... +-..|...+.|+.+.++.|.|... +-..+..+++|+.||+.+|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 35789999999987532 223456668899999999988621 223467789999999999988743 335
Q ss_pred cCCCCCCCCEEEccCCcCCCCCChhc-----cCCCCCCEEEeeCCcccccCC-----CCCCCCCCCcccccCCC
Q 027850 136 SLSRLSNLKFLRLNGNKLTGKIPREL-----TKLGNLKILDVSNNDLCGTIP-----TAGSFSKFSEESFMNNP 199 (218)
Q Consensus 136 ~~~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~~~-----~~~~l~~L~~L~l~~N~ 199 (218)
.++.+++|+.++++++.+...-...+ ...++|+.+.+.+|.++..-. .....+.|..|.+++|.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 67788899999999998875433222 357899999999999874311 11457889999999993
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=1.5e-05 Score=70.94 Aligned_cols=127 Identities=18% Similarity=0.249 Sum_probs=67.0
Q ss_pred CEEEEEcCCCCCc-cccCccc-CCCCCCCEEEccCCcCCCC-CCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEE
Q 027850 70 RVTRLDLGNGKLS-GNLVPEL-GKLERLQYLELYMNNLAGQ-IPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFL 146 (218)
Q Consensus 70 ~l~~L~l~~~~l~-~~~~~~~-~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 146 (218)
+++.||+++...- ...+..+ ..+|+|+.|.+.+-.+... .-....++++|..||++++.++.. ..++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5666666664321 1111112 2357777777766555421 122234567777777777776632 556666777766
Q ss_pred EccCCcCCC-CCChhccCCCCCCEEEeeCCcccccC--C----CC-CCCCCCCcccccCC
Q 027850 147 RLNGNKLTG-KIPRELTKLGNLKILDVSNNDLCGTI--P----TA-GSFSKFSEESFMNN 198 (218)
Q Consensus 147 ~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~--~----~~-~~l~~L~~L~l~~N 198 (218)
.+.+=.+.. ..-..+..+++|+.||+|........ . +. ..+++|+.||.++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 666555442 11233556677777777654332211 1 11 34666666666655
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=6e-05 Score=58.23 Aligned_cols=66 Identities=30% Similarity=0.320 Sum_probs=29.2
Q ss_pred cCCCCCCCEEEccCC--cCCCCCCcccccCCCCCEEEccCCcCCCC-CcccCCCCCCCCEEEccCCcCC
Q 027850 89 LGKLERLQYLELYMN--NLAGQIPKELGQLKSLISLDLYHNNLTGP-IPPSLSRLSNLKFLRLNGNKLT 154 (218)
Q Consensus 89 ~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~ 154 (218)
|..+++|+.|.++.| ++.+..+.-...+++|+++++++|+++.. --..+..+.+|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 334455555555555 33333333333345555555555555421 0012233344445555554433
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=6.7e-05 Score=57.99 Aligned_cols=109 Identities=25% Similarity=0.270 Sum_probs=72.5
Q ss_pred cCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCC--cCCCCCcccCCCCCCCCEEEccCCcCCC-CCChhc
Q 027850 85 LVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN--NLTGPIPPSLSRLSNLKFLRLNGNKLTG-KIPREL 161 (218)
Q Consensus 85 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~ 161 (218)
+....-.+..|+.+.+.+..++. + ..+..+++|+.|.++.| ++.+.++.....+++|+++++++|+++- .--..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 33334455667777777777762 2 24667889999999999 6666666666677999999999999872 111235
Q ss_pred cCCCCCCEEEeeCCcccccCCC---C-CCCCCCCcccc
Q 027850 162 TKLGNLKILDVSNNDLCGTIPT---A-GSFSKFSEESF 195 (218)
Q Consensus 162 ~~l~~L~~L~l~~N~l~~~~~~---~-~~l~~L~~L~l 195 (218)
..+.+|..|++.+|..+..--. . .-+++|+.|+-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 5677788899988876652111 1 34566666653
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00012 Score=65.27 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCCCcc-ccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCC-CcccCCCCCCCC
Q 027850 67 ADNRVTRLDLGNGKLSG-NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGP-IPPSLSRLSNLK 144 (218)
Q Consensus 67 ~~~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~ 144 (218)
..+.+++|.+++-.+.. .+.....++++|..||+++..++.. ..++.+++|+.|.+.+=.+... .-..+..+++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 34689999999877643 2334456789999999999999843 5688899999998888766631 123567899999
Q ss_pred EEEccCCcCCCCC--C----hhccCCCCCCEEEeeCCcccccC
Q 027850 145 FLRLNGNKLTGKI--P----RELTKLGNLKILDVSNNDLCGTI 181 (218)
Q Consensus 145 ~L~l~~n~l~~~~--p----~~~~~l~~L~~L~l~~N~l~~~~ 181 (218)
.||+|..+..... . +.-..+|+|+.||.+++.+....
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9999988755221 1 12245899999999998776543
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=5.6e-06 Score=64.66 Aligned_cols=100 Identities=28% Similarity=0.275 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCC-cccCCCCCCCCEE
Q 027850 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI-PPSLSRLSNLKFL 146 (218)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L 146 (218)
..+|+.|++-++.+.++ ....+|+.|+.|.|+-|+|+..-| +..++.|+.|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34677788888877643 224578889999999999884433 778889999999999887431 1467788899999
Q ss_pred EccCCcCCCCCCh-----hccCCCCCCEEE
Q 027850 147 RLNGNKLTGKIPR-----ELTKLGNLKILD 171 (218)
Q Consensus 147 ~l~~n~l~~~~p~-----~~~~l~~L~~L~ 171 (218)
.+..|.-.+.-+. .+..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998887665553 356778888876
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.0013 Score=54.90 Aligned_cols=107 Identities=21% Similarity=0.317 Sum_probs=61.7
Q ss_pred CCCcceeEeCCCCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCC-cCCCCCCcccccCCCCCEEEccCCcCC--CCC
Q 027850 57 PCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMN-NLAGQIPKELGQLKSLISLDLYHNNLT--GPI 133 (218)
Q Consensus 57 ~c~~~~v~c~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~ 133 (218)
.|.+..++ ..+.+++.|.++++.--..+|..+ .++|+.|++++| .+. .+|. +|+.|++..+... +.+
T Consensus 61 ~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~L 130 (426)
T PRK15386 61 DCDIESLP-VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNV 130 (426)
T ss_pred CCCCcccC-CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccC
Confidence 45555554 345568888887644323445433 257788888877 443 4443 3455555544321 134
Q ss_pred cccCCCC------------------CCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCc
Q 027850 134 PPSLSRL------------------SNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176 (218)
Q Consensus 134 p~~~~~l------------------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 176 (218)
|..+..+ ++|++|+++++... ..|..+. .+|++|+++.+.
T Consensus 131 PssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 131 PNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 4333222 37889999888765 3444333 589999998763
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=6.8e-05 Score=59.30 Aligned_cols=83 Identities=30% Similarity=0.329 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCCCcc--ccCcccCCCCCCCEEEccCCcCCCCCCccc-ccCCCCCEEEccCCcCCCCCc-ccCCCCCCCC
Q 027850 69 NRVTRLDLGNGKLSG--NLVPELGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNLTGPIP-PSLSRLSNLK 144 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~ 144 (218)
.+|+.+||.+|.|+. ++...+.++|.|+.|+++.|.+...+. .+ ....+|+.|.+.+..+.+... ..+..++.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 368888888888863 223345678888889998888873332 22 356788888888887765432 3456677777
Q ss_pred EEEccCCc
Q 027850 145 FLRLNGNK 152 (218)
Q Consensus 145 ~L~l~~n~ 152 (218)
.|.++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 77777774
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=3.9e-05 Score=60.63 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=34.4
Q ss_pred CCCCCCEEEccCCc-CCCCCChhccCCCCCCEEEeeCCcccccCCC----CCCCCCCCcccccCC
Q 027850 139 RLSNLKFLRLNGNK-LTGKIPRELTKLGNLKILDVSNNDLCGTIPT----AGSFSKFSEESFMNN 198 (218)
Q Consensus 139 ~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~----~~~l~~L~~L~l~~N 198 (218)
.+++|.+||++.+. ++...-..+.+++.|++|.++.|+. .+|+ ....++|.+|++-+.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 45666777776654 3333334456667777777776653 3333 256677777776665
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.0032 Score=43.74 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccC
Q 027850 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150 (218)
Q Consensus 71 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 150 (218)
++.+.+.. .+.......|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+.+.+..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 44444442 233333344444545555555443 3322233344444455555543 22111122334444455444433
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.75 E-value=0.0019 Score=50.70 Aligned_cols=129 Identities=18% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCCccccCcc----cCCCCCCCEEEccCCcCCCCCCccc-------------ccCCCCCEEEccCCcCCC
Q 027850 69 NRVTRLDLGNGKLSGNLVPE----LGKLERLQYLELYMNNLAGQIPKEL-------------GQLKSLISLDLYHNNLTG 131 (218)
Q Consensus 69 ~~l~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~p~~~-------------~~l~~L~~L~l~~n~l~~ 131 (218)
++++.++|+.|.+....|+. ++.-..|..|.+++|.+...--..+ .+-+.|+......|++..
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 46777777777766555543 3445667777777776652211111 233667777777777652
Q ss_pred CCc-----ccCCCCCCCCEEEccCCcCCCCCC-----hhccCCCCCCEEEeeCCcccccCCC-----CCCCCCCCccccc
Q 027850 132 PIP-----PSLSRLSNLKFLRLNGNKLTGKIP-----RELTKLGNLKILDVSNNDLCGTIPT-----AGSFSKFSEESFM 196 (218)
Q Consensus 132 ~~p-----~~~~~l~~L~~L~l~~n~l~~~~p-----~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~l~~L~~L~l~ 196 (218)
.| ..+....+|+++.+..|.|.-.-. ..+..+.+|+.||+++|.++-.... ...++.|++|.+.
T Consensus 172 -gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 172 -GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred -CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 22 123333567777777777652110 1234567788888888876632221 1345556777766
Q ss_pred CC
Q 027850 197 NN 198 (218)
Q Consensus 197 ~N 198 (218)
.|
T Consensus 251 DC 252 (388)
T COG5238 251 DC 252 (388)
T ss_pred ch
Confidence 66
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00032 Score=55.61 Aligned_cols=88 Identities=31% Similarity=0.347 Sum_probs=61.4
Q ss_pred CCCCCCEEEccCCcCCCC--CCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCC-CChhccCCCCC
Q 027850 91 KLERLQYLELYMNNLAGQ--IPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGK-IPRELTKLGNL 167 (218)
Q Consensus 91 ~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L 167 (218)
..+.++.+||.+|.|+.. +-..+.+++.|+.|+++.|.+...+...-....+|+++-+.++.+... ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 356788999999999842 223356789999999999988743322113567899999988877532 22345677788
Q ss_pred CEEEeeCCccc
Q 027850 168 KILDVSNNDLC 178 (218)
Q Consensus 168 ~~L~l~~N~l~ 178 (218)
+.|+++.|.+.
T Consensus 149 telHmS~N~~r 159 (418)
T KOG2982|consen 149 TELHMSDNSLR 159 (418)
T ss_pred hhhhhccchhh
Confidence 88888888544
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.65 E-value=0.0069 Score=42.02 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=64.1
Q ss_pred CcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCC
Q 027850 86 VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLG 165 (218)
Q Consensus 86 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 165 (218)
...|.+..+|+.+.+.. .+.......|..+++|+.+.+..+ +...-...|.++++++.+.+.. .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34577888999999885 566455677888999999999886 6533345788888999999976 44434455677899
Q ss_pred CCCEEEeeCCcccccCCCC-CCCCCCCcccccCC
Q 027850 166 NLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNN 198 (218)
Q Consensus 166 ~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N 198 (218)
+|+.+++..+ +....... ... +++.+.+..+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECCC
Confidence 9999999765 44343333 444 7887777654
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=2.2e-05 Score=61.97 Aligned_cols=84 Identities=26% Similarity=0.250 Sum_probs=45.6
Q ss_pred CEEEEEcCCCCCcccc-CcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCc-CCCC-CcccCCCCCCCCEE
Q 027850 70 RVTRLDLGNGKLSGNL-VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN-LTGP-IPPSLSRLSNLKFL 146 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L 146 (218)
+++.+||++..|+... ...+..+.+|+.|.+.++++...+-..+..-..|+.++++++. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677777777665221 1223445666666666666665544455555666666666643 2211 01123455566666
Q ss_pred EccCCcC
Q 027850 147 RLNGNKL 153 (218)
Q Consensus 147 ~l~~n~l 153 (218)
+++++.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 6666544
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.21 E-value=0.0037 Score=49.16 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=66.9
Q ss_pred ccCCCCCCCEEEccCCcCCCCCCcc----cccCCCCCEEEccCCcCCCCCcc-------------cCCCCCCCCEEEccC
Q 027850 88 ELGKLERLQYLELYMNNLAGQIPKE----LGQLKSLISLDLYHNNLTGPIPP-------------SLSRLSNLKFLRLNG 150 (218)
Q Consensus 88 ~~~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~~p~-------------~~~~l~~L~~L~l~~ 150 (218)
.+.+++.|+..+|+.|.+....|.. ++.-+.|.+|.+++|.+.-.-.. ...+-+.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3456777777777777776555543 34556777777777765411111 122346677777777
Q ss_pred CcCCCCCCh----hccCCCCCCEEEeeCCcccccCCC------CCCCCCCCcccccCCCCCC
Q 027850 151 NKLTGKIPR----ELTKLGNLKILDVSNNDLCGTIPT------AGSFSKFSEESFMNNPRLE 202 (218)
Q Consensus 151 n~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~~~------~~~l~~L~~L~l~~N~~l~ 202 (218)
|++..-... .+..-..|+.+.+..|.|.-..-. ...+.+|+.|+++.| .++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft 227 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFT 227 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chh
Confidence 776522111 122224677888888866522110 145678999999999 443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.95 E-value=0.0027 Score=29.85 Aligned_cols=10 Identities=70% Similarity=0.720 Sum_probs=3.7
Q ss_pred EEEccCCcCC
Q 027850 121 SLDLYHNNLT 130 (218)
Q Consensus 121 ~L~l~~n~l~ 130 (218)
+||+++|+++
T Consensus 4 ~Ldls~n~l~ 13 (22)
T PF00560_consen 4 YLDLSGNNLT 13 (22)
T ss_dssp EEEETSSEES
T ss_pred EEECCCCcCE
Confidence 3333333333
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.004 Score=29.23 Aligned_cols=19 Identities=47% Similarity=0.798 Sum_probs=11.0
Q ss_pred CCEEEccCCcCCCCCCcccc
Q 027850 95 LQYLELYMNNLAGQIPKELG 114 (218)
Q Consensus 95 L~~L~l~~n~l~~~~p~~~~ 114 (218)
|++|++++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666666 5554443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.00026 Score=55.58 Aligned_cols=99 Identities=22% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCC-ChhccCCCCCCEE
Q 027850 92 LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKI-PRELTKLGNLKIL 170 (218)
Q Consensus 92 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L 170 (218)
+.+.+.|+.=++.+..+ .....++.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45667778778887732 2345789999999999999954 44788999999999999987321 1346789999999
Q ss_pred EeeCCcccccCCCC------CCCCCCCccc
Q 027850 171 DVSNNDLCGTIPTA------GSFSKFSEES 194 (218)
Q Consensus 171 ~l~~N~l~~~~~~~------~~l~~L~~L~ 194 (218)
.|..|.=.|..+.. .-+++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999877654432 4567777766
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.29 E-value=0.00031 Score=53.78 Aligned_cols=84 Identities=27% Similarity=0.301 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEE
Q 027850 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147 (218)
Q Consensus 68 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 147 (218)
..+++.||++.|++. .....|..++.+..++++.|.+. ..|..+..+..++.+++..|..+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 357888888888775 34455666777888888888887 77888888888888888888877 7788888888888888
Q ss_pred ccCCcCC
Q 027850 148 LNGNKLT 154 (218)
Q Consensus 148 l~~n~l~ 154 (218)
..+|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8887764
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.69 E-value=0.00031 Score=53.78 Aligned_cols=89 Identities=20% Similarity=0.292 Sum_probs=75.5
Q ss_pred ccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCC
Q 027850 88 ELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNL 167 (218)
Q Consensus 88 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 167 (218)
.+..+...+.||++.|++- .+-..|+.++.+..++++.|.+. ..|..++....+..+++..|..+ ..|..+...+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4556678889999999887 45556788889999999999998 78888888888899999999887 788899999999
Q ss_pred CEEEeeCCcccc
Q 027850 168 KILDVSNNDLCG 179 (218)
Q Consensus 168 ~~L~l~~N~l~~ 179 (218)
+++++-.|.+..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 999999888654
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.92 E-value=0.25 Score=23.84 Aligned_cols=13 Identities=46% Similarity=0.677 Sum_probs=5.6
Q ss_pred CCCEEEccCCcCC
Q 027850 142 NLKFLRLNGNKLT 154 (218)
Q Consensus 142 ~L~~L~l~~n~l~ 154 (218)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.92 E-value=0.25 Score=23.84 Aligned_cols=13 Identities=46% Similarity=0.677 Sum_probs=5.6
Q ss_pred CCCEEEccCCcCC
Q 027850 142 NLKFLRLNGNKLT 154 (218)
Q Consensus 142 ~L~~L~l~~n~l~ 154 (218)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.32 E-value=0.046 Score=41.17 Aligned_cols=80 Identities=24% Similarity=0.244 Sum_probs=42.1
Q ss_pred CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCC-CCcccc-cCCCCCEEEccCCc-CCCCCcccCCCCCCCCEE
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQ-IPKELG-QLKSLISLDLYHNN-LTGPIPPSLSRLSNLKFL 146 (218)
Q Consensus 70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~-~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L 146 (218)
.|+.+|-++..|..+-.+.+..++.++.|.+.++.--+. --+.+. -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 477788888877766666677777777777766643210 000111 23556666666443 332212233444445444
Q ss_pred Ecc
Q 027850 147 RLN 149 (218)
Q Consensus 147 ~l~ 149 (218)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.19 E-value=0.31 Score=23.01 Aligned_cols=15 Identities=47% Similarity=0.676 Sum_probs=7.9
Q ss_pred CCCCEEEeeCCcccc
Q 027850 165 GNLKILDVSNNDLCG 179 (218)
Q Consensus 165 ~~L~~L~l~~N~l~~ 179 (218)
++|++|++++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456666666666553
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.86 E-value=0.15 Score=43.47 Aligned_cols=61 Identities=31% Similarity=0.300 Sum_probs=25.0
Q ss_pred CCCCCEEEccCCc-CCCCCcccC-CCCCCCCEEEccCCc-CCCC-CChhccCCCCCCEEEeeCCc
Q 027850 116 LKSLISLDLYHNN-LTGPIPPSL-SRLSNLKFLRLNGNK-LTGK-IPRELTKLGNLKILDVSNND 176 (218)
Q Consensus 116 l~~L~~L~l~~n~-l~~~~p~~~-~~l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L~l~~N~ 176 (218)
+++|+.++++++. ++...-..+ ..+++|++|.+.++. ++.. +-.....+++|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555555555544 332211111 124455555544443 2211 11122344555555555443
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.82 E-value=0.77 Score=22.43 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=8.7
Q ss_pred CCCCEEEeeCCccc
Q 027850 165 GNLKILDVSNNDLC 178 (218)
Q Consensus 165 ~~L~~L~l~~N~l~ 178 (218)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666654
No 78
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.86 E-value=0.71 Score=30.46 Aligned_cols=20 Identities=35% Similarity=0.207 Sum_probs=8.7
Q ss_pred CchhhhHHHHHHHHHHHHhh
Q 027850 1 MAICRSGLFHLLVALVLSNT 20 (218)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (218)
||++...++-+++++++.++
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 88444333333333333333
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.74 E-value=1.1 Score=21.89 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=6.7
Q ss_pred CCCEEEccCCcCC
Q 027850 118 SLISLDLYHNNLT 130 (218)
Q Consensus 118 ~L~~L~l~~n~l~ 130 (218)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=81.02 E-value=0.38 Score=41.00 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=26.6
Q ss_pred CCCCCEEEccCCc-CCCCCCcccc-cCCCCCEEEccCCc-CCCC-CcccCCCCCCCCEEEccCCc
Q 027850 92 LERLQYLELYMNN-LAGQIPKELG-QLKSLISLDLYHNN-LTGP-IPPSLSRLSNLKFLRLNGNK 152 (218)
Q Consensus 92 l~~L~~L~l~~n~-l~~~~p~~~~-~l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L~l~~n~ 152 (218)
+++|+.++++.+. ++...-..+. .+++|+.|.+.++. ++.. +-.....++.|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3555555555554 3321111111 24556666544444 2321 11222344556666665554
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.65 E-value=0.15 Score=38.48 Aligned_cols=81 Identities=22% Similarity=0.201 Sum_probs=46.6
Q ss_pred CCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCC-CcccC-CCCCCCCEEEccCCc-CCCCCChhccCCCCCCEE
Q 027850 94 RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGP-IPPSL-SRLSNLKFLRLNGNK-LTGKIPRELTKLGNLKIL 170 (218)
Q Consensus 94 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~-~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L 170 (218)
.++.++-+++.|...--+.+..++.++.|.+.++.--+. .-+.+ +-.++|+.|++++|. |+..--..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 356677777777644444566667777777666642211 00111 133577888888663 554444556667777777
Q ss_pred EeeC
Q 027850 171 DVSN 174 (218)
Q Consensus 171 ~l~~ 174 (218)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.92 E-value=1.4 Score=21.79 Aligned_cols=14 Identities=50% Similarity=0.622 Sum_probs=9.5
Q ss_pred CCCCEEEeeCCccc
Q 027850 165 GNLKILDVSNNDLC 178 (218)
Q Consensus 165 ~~L~~L~l~~N~l~ 178 (218)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777664
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.58 E-value=1.6 Score=37.94 Aligned_cols=12 Identities=50% Similarity=0.620 Sum_probs=6.2
Q ss_pred CCCCCEEEccCC
Q 027850 116 LKSLISLDLYHN 127 (218)
Q Consensus 116 l~~L~~L~l~~n 127 (218)
.++|..|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 345555555555
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.76 E-value=2.2 Score=37.18 Aligned_cols=80 Identities=26% Similarity=0.247 Sum_probs=44.8
Q ss_pred cCCCCCEEEccCCcCCCC--CcccCCCCCCCCEEEccCCcCCCCCChhcc--CCCCCCEEEeeCCcccccCCCC------
Q 027850 115 QLKSLISLDLYHNNLTGP--IPPSLSRLSNLKFLRLNGNKLTGKIPRELT--KLGNLKILDVSNNDLCGTIPTA------ 184 (218)
Q Consensus 115 ~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~~~~------ 184 (218)
+.+.+..+++++|++... +...-...++|.+|+|++|...-....++. +...|++|-+.+|.++.....-
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 456677778888887622 112223456788888888822111112222 2345677888888776543321
Q ss_pred --CCCCCCCccc
Q 027850 185 --GSFSKFSEES 194 (218)
Q Consensus 185 --~~l~~L~~L~ 194 (218)
..+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 2466666555
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.73 E-value=3.3 Score=19.84 Aligned_cols=16 Identities=6% Similarity=0.142 Sum_probs=10.5
Q ss_pred CCCCcccccCCCCCCC
Q 027850 188 SKFSEESFMNNPRLEG 203 (218)
Q Consensus 188 ~~L~~L~l~~N~~l~~ 203 (218)
++|++|++++++.+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5677777777765553
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=45.30 E-value=17 Score=38.16 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.6
Q ss_pred EccCCcCCCCCcccCCCCCCCCEEEccCCcCC
Q 027850 123 DLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT 154 (218)
Q Consensus 123 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 154 (218)
||++|+|+...+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899998555567888999999999999875
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.57 E-value=21 Score=37.46 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=28.0
Q ss_pred EccCCcCCCCCCcccccCCCCCEEEccCCcCC
Q 027850 99 ELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130 (218)
Q Consensus 99 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 130 (218)
||++|+|....+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999666778889999999999999876
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=33.12 E-value=0.97 Score=39.06 Aligned_cols=129 Identities=30% Similarity=0.347 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCccc----cCcccCCCCCCCEEEccCCcCCC----CCCcccc----cCCCCCEEEccCCcCCCCC----c
Q 027850 71 VTRLDLGNGKLSGN----LVPELGKLERLQYLELYMNNLAG----QIPKELG----QLKSLISLDLYHNNLTGPI----P 134 (218)
Q Consensus 71 l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~----~l~~L~~L~l~~n~l~~~~----p 134 (218)
++.|++..+.++.. +...+.....++.++++.|.+.. .++..+. ...++++|.+.++.++... -
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 44455555554422 23334445666677777766631 1222222 3566777777777665210 1
Q ss_pred ccCCCCCC-CCEEEccCCcCCCC----CChhccCC-CCCCEEEeeCCcccccCCC----C-CCCCCCCcccccCCC
Q 027850 135 PSLSRLSN-LKFLRLNGNKLTGK----IPRELTKL-GNLKILDVSNNDLCGTIPT----A-GSFSKFSEESFMNNP 199 (218)
Q Consensus 135 ~~~~~l~~-L~~L~l~~n~l~~~----~p~~~~~l-~~L~~L~l~~N~l~~~~~~----~-~~l~~L~~L~l~~N~ 199 (218)
..+...+. +..+++..|.+... ..+.+..+ ..+++++++.|.++..-.. . ..++.++.+.++.|+
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 12233333 55567777766522 12223334 5567777777776643322 1 344566677777664
No 89
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=21.41 E-value=1.3e+02 Score=17.91 Aligned_cols=6 Identities=33% Similarity=-0.103 Sum_probs=3.2
Q ss_pred Cchhhh
Q 027850 1 MAICRS 6 (218)
Q Consensus 1 m~~~~~ 6 (218)
||++..
T Consensus 1 MA~Kl~ 6 (65)
T PF10731_consen 1 MASKLI 6 (65)
T ss_pred Ccchhh
Confidence 775433
No 90
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.47 E-value=1.1e+02 Score=14.52 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHhhhc
Q 027850 6 SGLFHLLVALVLSNTIA 22 (218)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (218)
.+.+.+++++++...++
T Consensus 5 ~FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 5 GFALIVVLFILLIIVGA 21 (24)
T ss_pred cchhHHHHHHHHHHhcc
Confidence 44556666666655544
Done!