Query 027850
Match_columns 218
No_of_seqs 208 out of 2103
Neff 9.7
Searched_HMMs 13730
Date Tue Mar 26 18:29:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027850.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2215-2219//hhsearch_scop/027850hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ogqa_ c.10.2.8 (A:) Polygala 100.0 3.7E-37 2.7E-41 177.7 14.5 157 25-183 3-167 (313)
2 d1p9ag_ c.10.2.7 (G:) von Will 99.9 1.3E-22 9.6E-27 113.5 12.9 138 71-209 79-216 (266)
3 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.9 7.3E-23 5.3E-27 114.7 11.6 124 56-179 6-140 (192)
4 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 7.3E-23 5.3E-27 114.7 8.4 140 69-208 105-245 (284)
5 d1xkua_ c.10.2.7 (A:) Decorin 99.9 1.8E-20 1.3E-24 104.1 15.5 75 56-130 8-92 (305)
6 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.8 1.4E-21 1E-25 109.0 6.9 142 61-209 4-147 (192)
7 d1p9ag_ c.10.2.7 (G:) von Will 99.8 1.4E-19 1E-23 100.2 13.9 132 68-203 30-186 (266)
8 d1ozna_ c.10.2.7 (A:) Reticulo 99.8 1E-18 7.4E-23 96.4 15.3 130 69-198 32-187 (284)
9 d1ogqa_ c.10.2.8 (A:) Polygala 99.7 3.4E-18 2.5E-22 94.1 6.9 138 69-206 76-309 (313)
10 d1xkua_ c.10.2.7 (A:) Decorin 99.7 5.5E-17 4E-21 88.8 12.3 128 69-200 150-284 (305)
11 d1dcea3 c.10.2.2 (A:444-567) R 99.7 4.5E-17 3.3E-21 89.1 11.2 104 72-180 1-105 (124)
12 d2ifga3 c.10.2.7 (A:36-191) Hi 99.7 2.8E-17 2E-21 90.1 9.6 102 75-178 14-116 (156)
13 d1a9na_ c.10.2.4 (A:) Spliceso 99.7 1.5E-17 1.1E-21 91.3 7.4 124 68-194 17-145 (162)
14 d1dcea3 c.10.2.2 (A:444-567) R 99.7 8.5E-17 6.2E-21 87.9 9.5 101 96-201 1-103 (124)
15 d1a9na_ c.10.2.4 (A:) Spliceso 99.7 5.7E-17 4.2E-21 88.7 7.4 111 87-200 12-124 (162)
16 d2omza2 c.10.2.1 (A:33-416) In 99.7 3.3E-16 2.4E-20 85.4 11.1 127 69-203 219-365 (384)
17 d2omxa2 c.10.2.1 (A:37-235) In 99.7 8.6E-16 6.2E-20 83.5 13.0 128 68-205 61-188 (199)
18 d2omxa2 c.10.2.1 (A:37-235) In 99.6 3.2E-15 2.4E-19 80.9 12.9 127 69-205 40-166 (199)
19 d1h6ta2 c.10.2.1 (A:31-240) In 99.6 3.1E-15 2.3E-19 81.0 12.5 127 68-204 67-193 (210)
20 d2omza2 c.10.2.1 (A:33-416) In 99.6 1E-14 7.6E-19 78.7 11.1 81 113-198 303-383 (384)
21 d2ifga3 c.10.2.7 (A:36-191) Hi 99.6 7.9E-15 5.8E-19 79.2 10.4 114 95-209 10-124 (156)
22 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.6 1.3E-14 9.4E-19 78.3 11.2 99 56-154 6-116 (242)
23 d1h6ta2 c.10.2.1 (A:31-240) In 99.6 2E-14 1.5E-18 77.4 11.9 120 70-198 47-166 (210)
24 d1h6ua2 c.10.2.1 (A:36-262) In 99.6 2.8E-14 2E-18 76.9 11.5 129 68-204 62-210 (227)
25 d1m9la_ c.10.3.1 (A:) Outer ar 99.5 2.7E-17 2E-21 90.1 -7.5 111 68-183 47-158 (198)
26 d1m9la_ c.10.3.1 (A:) Outer ar 99.4 1.5E-16 1.1E-20 86.9 -7.8 112 84-200 39-152 (198)
27 d1h6ua2 c.10.2.1 (A:36-262) In 99.4 1.1E-12 7.7E-17 69.9 11.0 126 70-203 42-187 (227)
28 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.4 2.6E-12 1.9E-16 68.2 11.2 132 69-202 53-214 (242)
29 d1jl5a_ c.10.2.6 (A:) Leucine 99.3 1E-10 7.4E-15 61.1 13.5 13 70-82 59-71 (353)
30 d1jl5a_ c.10.2.6 (A:) Leucine 99.2 2E-10 1.4E-14 59.9 12.3 51 142-199 285-335 (353)
31 d2astb2 c.10.1.3 (B:2136-2419) 99.1 4.2E-12 3.1E-16 67.2 1.8 59 69-127 71-131 (284)
32 d2astb2 c.10.1.3 (B:2136-2419) 99.1 2.7E-12 2E-16 68.0 -0.8 57 70-126 47-104 (284)
33 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.1 2.7E-12 2E-16 68.1 -1.8 107 92-198 311-436 (460)
34 d2ca6a1 c.10.1.2 (A:2-345) Rna 98.9 2.6E-11 1.9E-15 63.7 -1.4 110 90-199 183-313 (344)
35 d2ca6a1 c.10.1.2 (A:2-345) Rna 98.8 2.9E-10 2.1E-14 59.1 0.8 108 92-199 157-284 (344)
36 d1koha1 c.10.2.3 (A:201-362) m 98.8 4.9E-11 3.6E-15 62.5 -4.1 81 91-171 63-152 (162)
37 d1z7xw1 c.10.1.1 (W:1-460) Rib 98.7 3.2E-10 2.4E-14 58.9 -1.4 134 69-203 255-411 (460)
38 d1koha1 c.10.2.3 (A:201-362) m 98.7 2.3E-09 1.7E-13 55.1 1.7 105 89-194 38-152 (162)
39 d1pgva_ c.10.1.1 (A:) Tropomod 98.2 4.7E-07 3.5E-11 44.9 3.0 110 68-177 14-143 (167)
40 d1pgva_ c.10.1.1 (A:) Tropomod 97.7 7.3E-06 5.3E-10 39.7 2.4 109 90-198 12-141 (167)
41 d1io0a_ c.10.1.1 (A:) Tropomod 97.3 1.4E-05 1E-09 38.5 -0.3 109 69-177 17-144 (166)
42 d1io0a_ c.10.1.1 (A:) Tropomod 96.0 0.00079 5.8E-08 30.7 0.8 110 89-198 13-142 (166)
No 1
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=100.00 E-value=3.7e-37 Score=177.73 Aligned_cols=157 Identities=35% Similarity=0.606 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCEEEECCC---CCEEEEECCCCCCCC--CCCCCCCCCCCCCE
Q ss_conf 9802799999999955899999889999999998--7431573999---978999839999731--16845679999988
Q 027850 25 NANVEGDALFALRRAVKDPQGVLQSWDPTLVDPC--TWFHVTCDAD---NRVTRLDLGNGKLSG--NLVPELGKLERLQY 97 (218)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c--~~~gv~c~~~---~~l~~L~Ls~~~l~~--~~~~~~~~l~~L~~ 97 (218)
+.++|++||.+||+++.++. .+.+|... .++| .|.||+|+.. .+|+.|+++++.+.+ .+|..+..++.|++
T Consensus 3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~-~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~ 80 (313)
T d1ogqa_ 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCHHHHHHHHHHHHHCCCCC-CCCCCCCC-CCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 89899999999999779998-67788999-99988948896974899947988998989988888879847846753352
Q ss_pred EECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCC
Q ss_conf 97337-85787788000268889889733885789996137899999989811884888898110289999999814781
Q 027850 98 LELYM-NNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176 (218)
Q Consensus 98 L~L~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 176 (218)
|++++ |.+.+.+|..+..+++|++|++++|++.+..+..+..+..|+.++++.|.+.+.+|..+..++.++.+++++|.
T Consensus 81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~ 160 (313)
T d1ogqa_ 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf 02026543330024311454200110203564344332222201110011112245555685122067400000023553
Q ss_pred CCCCCCC
Q ss_conf 4413899
Q 027850 177 LCGTIPT 183 (218)
Q Consensus 177 l~~~~~~ 183 (218)
+.+.+|.
T Consensus 161 l~~~ip~ 167 (313)
T d1ogqa_ 161 ISGAIPD 167 (313)
T ss_dssp CEEECCG
T ss_pred CCCCCCC
T ss_conf 3562031
No 2
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.89 E-value=1.3e-22 Score=113.54 Aligned_cols=138 Identities=27% Similarity=0.206 Sum_probs=85.0
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 89998399997311684567999998897337857877880002688898897338857899961378999999898118
Q 027850 71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150 (218)
Q Consensus 71 l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~ 150 (218)
++.|++++|.+.. .+..+..++.|+.|+++++.+....+..+..+..++.+++++|.+....+..+..++.++.+++++
T Consensus 79 L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~ 157 (266)
T d1p9ag_ 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (266)
T ss_dssp CCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCC
T ss_conf 2111112222211-111212222222222222311011001122221111221243421022123332211100000001
Q ss_pred CCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84888898110289999999814781441389999877778102347878889886676
Q 027850 151 NKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGF 209 (218)
Q Consensus 151 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~~~~~ 209 (218)
|++++..+..+..+++|++|++++|+++..++....+++|+.+++++||..|++++.++
T Consensus 158 N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l 216 (266)
T d1p9ag_ 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYF 216 (266)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 56522372001342124234301397855686677788899998369998788643799
No 3
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.89 E-value=7.3e-23 Score=114.67 Aligned_cols=124 Identities=25% Similarity=0.311 Sum_probs=69.7
Q ss_pred CCCCCCEEEECC----------CCCEEEEECCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 998743157399----------99789998399997311-6845679999988973378578778800026888988973
Q 027850 56 DPCTWFHVTCDA----------DNRVTRLDLGNGKLSGN-LVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDL 124 (218)
Q Consensus 56 ~~c~~~gv~c~~----------~~~l~~L~Ls~~~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 124 (218)
+.|.+..|.|.. +.+++.|++++|.+... .+..|..+++|+.|++++|.+....+..+..++.|++|++
T Consensus 6 C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L 85 (192)
T d1w8aa_ 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 89769999970899670298989787889848987755302002578762721301363221212122211222210100
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCC
Q ss_conf 3885789996137899999989811884888898110289999999814781441
Q 027850 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCG 179 (218)
Q Consensus 125 s~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 179 (218)
++|++....+..|.++++|++|++++|+++...+..|..+++|+++++++|.+..
T Consensus 86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 3553443497998079746552457745353597785687533420003644343
No 4
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=7.3e-23 Score=114.69 Aligned_cols=140 Identities=23% Similarity=0.210 Sum_probs=114.4
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 97899983999973116845679999988973378578778800026888988973388578999613789999998981
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148 (218)
Q Consensus 69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 148 (218)
.+++.++++++.+....+..+.....|+.+++++|.+.+..+..|..++.|+.+++++|.+....+..+..+++|+.+++
T Consensus 105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l 184 (284)
T d1ozna_ 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (284)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHH
T ss_conf 02778756885443201353320001211020014314458057404340502231417656625666546563413142
Q ss_pred CCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 188488889811028999999981478144138999-987777810234787888988667
Q 027850 149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNPRLEGPELMG 208 (218)
Q Consensus 149 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N~~l~~~~~~~ 208 (218)
++|++++..|..|..+++|+++++++|.+.+.++.. ..+.+|+.+++++||..|.++..+
T Consensus 185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~ 245 (284)
T d1ozna_ 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245 (284)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf 1143466281676653200023333352210000023554656889811998878756469
No 5
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.85 E-value=1.8e-20 Score=104.09 Aligned_cols=75 Identities=27% Similarity=0.316 Sum_probs=45.6
Q ss_pred CCCCCCEEEECC----------CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 998743157399----------9978999839999731168456799999889733785787788000268889889733
Q 027850 56 DPCTWFHVTCDA----------DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLY 125 (218)
Q Consensus 56 ~~c~~~gv~c~~----------~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 125 (218)
+.|.|.+|.|.. +..++.|++++|.++...+..|.+++.|+.|++++|.+....|..|..++.|+.++++
T Consensus 8 c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 8 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCC
T ss_conf 89559999855999885198889997989784991898696576046565231123443445235665279855783156
Q ss_pred CCCCC
Q ss_conf 88578
Q 027850 126 HNNLT 130 (218)
Q Consensus 126 ~n~l~ 130 (218)
+|+++
T Consensus 88 ~n~l~ 92 (305)
T d1xkua_ 88 KNQLK 92 (305)
T ss_dssp SSCCS
T ss_pred CCCCC
T ss_conf 87567
No 6
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.84 E-value=1.4e-21 Score=109.02 Aligned_cols=142 Identities=23% Similarity=0.308 Sum_probs=120.3
Q ss_pred CEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 31573999978999839999731168456799999889733785787-78800026888988973388578999613789
Q 027850 61 FHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLTGPIPPSLSR 139 (218)
Q Consensus 61 ~gv~c~~~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 139 (218)
.+..|. .+.++.++++++ .+|..+. +.+++|++++|.++. ..+..|..+++|+.|++++|.+....+..+..
T Consensus 4 ~~C~C~----~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~ 76 (192)
T d1w8aa_ 4 AMCHCE----GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TTSEEE----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CCCEEC----CCEEEEECCCCC-CCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 998976----999997089967-0298989--787889848987755302002578762721301363221212122211
Q ss_pred CCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998981188488889811028999999981478144138999-9877778102347878889886676
Q 027850 140 LSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNPRLEGPELMGF 209 (218)
Q Consensus 140 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N~~l~~~~~~~~ 209 (218)
++.|++|++++|+++...+..|..+++|++|+|++|++++..+.. ..+++|+.+++++|+..+.++..+.
T Consensus 77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~ 147 (192)
T d1w8aa_ 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred CCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 22221010035534434979980797465524577453535977856875334200036443435302777
No 7
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=1.4e-19 Score=100.16 Aligned_cols=132 Identities=27% Similarity=0.253 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147 (218)
Q Consensus 68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 147 (218)
+..++.|+|++|.+....+..|..+++|+.|++++|.++. ++ .+..+++|+.|++++|++. ..+..+..++.|+.++
T Consensus 30 p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~ 106 (266)
T d1p9ag_ 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (266)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf 7688989884992898597786345655221356654444-31-1111223211111222221-1111212222222222
Q ss_pred CCC------------------------CCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 118------------------------8488889811028999999981478144138999-987777810234787888
Q 027850 148 LNG------------------------NKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNPRLE 202 (218)
Q Consensus 148 l~~------------------------n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N~~l~ 202 (218)
+++ |.+....+..+..++.++.+++++|++++..+.. ..+++|+.|++++| .++
T Consensus 107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~ 185 (266)
T d1p9ag_ 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLY 185 (266)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCC
T ss_conf 2223110110011222211112212434210221233322111000000015652237200134212423430139-785
Q ss_pred C
Q ss_conf 9
Q 027850 203 G 203 (218)
Q Consensus 203 ~ 203 (218)
.
T Consensus 186 ~ 186 (266)
T d1p9ag_ 186 T 186 (266)
T ss_dssp C
T ss_pred C
T ss_conf 5
No 8
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80 E-value=1e-18 Score=96.40 Aligned_cols=130 Identities=23% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-------------------------CCCCCCCCCCCEEE
Q ss_conf 97899983999973116845679999988973378578778-------------------------80002688898897
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQI-------------------------PKELGQLKSLISLD 123 (218)
Q Consensus 69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------------------p~~~~~l~~L~~L~ 123 (218)
..++.|++++|.++...+..|.+++.|+.+++++|.+.... +..+..+++|+.++
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf 99888977488179879778641421300001344543321112122222222222210223544620101010277875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 3388578999613789999998981188488889811028999999981478144138999-98777781023478
Q 027850 124 LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNN 198 (218)
Q Consensus 124 ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N 198 (218)
+++|.+....+..+....+|+.+++++|.++...+..+..++.|+.|++++|.+.+..+.. ..+++|+.+.+.+|
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N 187 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHC
T ss_conf 6885443201353320001211020014314458057404340502231417656625666546563413142114
No 9
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.72 E-value=3.4e-18 Score=94.09 Aligned_cols=138 Identities=34% Similarity=0.559 Sum_probs=96.5
Q ss_pred CCEEEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC------------------------CCCCCEEE
Q ss_conf 9789998399-9973116845679999988973378578778800026------------------------88898897
Q 027850 69 NRVTRLDLGN-GKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ------------------------LKSLISLD 123 (218)
Q Consensus 69 ~~l~~L~Ls~-~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------------------------l~~L~~L~ 123 (218)
.+++.+++++ |++.|.+|..+.++++|++|++++|.+.+..+..+.. ++.++.++
T Consensus 76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~ 155 (313)
T d1ogqa_ 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf 53352020265433300243114542001102035643443322222011100111122455556851220674000000
Q ss_pred CCCCCCCC-----------------------------------------------------------------------C
Q ss_conf 33885789-----------------------------------------------------------------------9
Q 027850 124 LYHNNLTG-----------------------------------------------------------------------P 132 (218)
Q Consensus 124 ls~n~l~~-----------------------------------------------------------------------~ 132 (218)
+++|.+.+ .
T Consensus 156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 235 (313)
T d1ogqa_ 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23553356203121443112323102246435332433222222233333343322222222222221112222222222
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96137899999989811884888898110289999999814781441389999877778102347878889886
Q 027850 133 IPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPEL 206 (218)
Q Consensus 133 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~~ 206 (218)
.+..+..+++++.+++++|++++.+|..+..+++|++|++++|+++|.+|..+.+++|+.+++.+|+.+||.++
T Consensus 236 ~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~pl 309 (313)
T d1ogqa_ 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf 22222245544444476570666087688479999989795883516689866679989788688950019898
No 10
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.72 E-value=5.5e-17 Score=88.77 Aligned_cols=128 Identities=22% Similarity=0.303 Sum_probs=95.3
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 97899983999973116845679999988973378578778800026888988973388578999613789999998981
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148 (218)
Q Consensus 69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 148 (218)
..++.++++++.+.. ++.. .+++++.|++++|......+..+..++.++.+++++|.+.+..+..+..+++|++|++
T Consensus 150 ~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L 226 (305)
T d1xkua_ 150 KKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226 (305)
T ss_dssp TTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCCCCCCCCCCCCCC-CCCC--CCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 656712034677451-6710--1776678989788677888267641341330154455332223454334433224302
Q ss_pred CCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-------CCCCCCCCCCCCCCCC
Q ss_conf 188488889811028999999981478144138999-------9877778102347878
Q 027850 149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-------GSFSKFSEESFMNNPR 200 (218)
Q Consensus 149 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~l~~L~~l~l~~N~~ 200 (218)
++|.++ .+|..+..+++|++|++++|+++...... ....+|+.+++++||.
T Consensus 227 ~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 227 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCHHCCCCCCCEEECCCCCC
T ss_conf 554002-4631103346789898989865763810026721002158889788989957
No 11
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.71 E-value=4.5e-17 Score=89.14 Aligned_cols=104 Identities=28% Similarity=0.388 Sum_probs=84.5
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 99983999973116845679999988973378578778800026888988973388578999613789999998981188
Q 027850 72 TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151 (218)
Q Consensus 72 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n 151 (218)
+.+++++|.++. ++ .+..++.|++|++++|.+. .+|..+..+++|+.+++++|.+.. .+ .+..+++|+.+++++|
T Consensus 1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEECCCCCCCC-CC-CCCCCCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCC-CC-CCCCCCCCCEEECCCC
T ss_conf 989868998988-71-0105898898979787168-652156554313545324321123-57-4123355576888898
Q ss_pred CCCCCC-CHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 488889-81102899999998147814413
Q 027850 152 KLTGKI-PRELTKLGNLKILDVSNNDLCGT 180 (218)
Q Consensus 152 ~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 180 (218)
++.... ...+..+++|+.+++++|.++..
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~ 105 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 658888825653799999998979968868
No 12
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.71 E-value=2.8e-17 Score=90.08 Aligned_cols=102 Identities=21% Similarity=0.135 Sum_probs=75.0
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 83999973116845679999988973378-57877880002688898897338857899961378999999898118848
Q 027850 75 DLGNGKLSGNLVPELGKLERLQYLELYMN-NLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKL 153 (218)
Q Consensus 75 ~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l 153 (218)
+.+++++. ..|..+..+++++.|++.++ .+....+..|..++.|+.|++++|+++...+..|..+++|++|++++|++
T Consensus 14 ~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l 92 (156)
T d2ifga3 14 RCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (156)
T ss_dssp ECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 85289976-58600257656574316898664436921225666667216202124774201112455433332267878
Q ss_pred CCCCCHHCCCCCCCCEEEEECCCCC
Q ss_conf 8889811028999999981478144
Q 027850 154 TGKIPRELTKLGNLKILDVSNNDLC 178 (218)
Q Consensus 154 ~~~~p~~~~~l~~L~~L~Ls~N~l~ 178 (218)
+ .++........|+.|++++|.+.
T Consensus 93 ~-~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 93 E-SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp S-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred C-CCCHHHHCCCCCCCCCCCCCCCC
T ss_conf 5-15745633532124335798633
No 13
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.70 E-value=1.5e-17 Score=91.27 Aligned_cols=124 Identities=18% Similarity=0.103 Sum_probs=93.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147 (218)
Q Consensus 68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 147 (218)
...+++|++++|.+.. ++..+..+++|+.|++++|.+... + .+..++.|+.|++++|++....+..+..++++++|+
T Consensus 17 ~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 93 (162)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCC-C-CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 5748489788997886-576200414599898979978764-7-744576130643102134577763223345344342
Q ss_pred CCCCCCCCCCC-HHCCCCCCCCEEEEECCCCCCCCC---C-CCCCCCCCCCC
Q ss_conf 11884888898-110289999999814781441389---9-99877778102
Q 027850 148 LNGNKLTGKIP-RELTKLGNLKILDVSNNDLCGTIP---T-AGSFSKFSEES 194 (218)
Q Consensus 148 l~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~---~-~~~l~~L~~l~ 194 (218)
+++|.+..... ..+..+++|+++++++|.++.... . ...+++|+.|+
T Consensus 94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCEEC
T ss_conf 0300016654211001365320664079963456106999998789958337
No 14
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.68 E-value=8.5e-17 Score=87.93 Aligned_cols=101 Identities=28% Similarity=0.354 Sum_probs=85.4
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECC
Q ss_conf 88973378578778800026888988973388578999613789999998981188488889811028999999981478
Q 027850 96 QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175 (218)
Q Consensus 96 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N 175 (218)
+.|++++|.++ .++ .+..++.|+++++++|+++ .+|+.+..+++|+.+++++|.++ .++ .+..+++|+.+++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred CEEECCCCCCC-CCC-CCCCCCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCC-CCC-CCCCCCCCCEEECCCC
T ss_conf 98986899898-871-0105898898979787168-65215655431354532432112-357-4123355576888898
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 1441389--9998777781023478788
Q 027850 176 DLCGTIP--TAGSFSKFSEESFMNNPRL 201 (218)
Q Consensus 176 ~l~~~~~--~~~~l~~L~~l~l~~N~~l 201 (218)
++..... ....+++|+.+++++|+.-
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf 6588888256537999999989799688
No 15
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=5.7e-17 Score=88.68 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=91.7
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCC
Q ss_conf 45679999988973378578778800026888988973388578999613789999998981188488889811028999
Q 027850 87 PELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGN 166 (218)
Q Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 166 (218)
+.+.+...++.|++++|.+.. ++..+..++.|+.+++++|.+. .+ +.+..+++|++|++++|.++...+..+..+++
T Consensus 12 ~~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~ 88 (162)
T d1a9na_ 12 AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88 (162)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HHCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCC-CC-CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 751685748489788997886-5762004145998989799787-64-77445761306431021345777632233453
Q ss_pred CCEEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 9999814781441389--999877778102347878
Q 027850 167 LKILDVSNNDLCGTIP--TAGSFSKFSEESFMNNPR 200 (218)
Q Consensus 167 L~~L~Ls~N~l~~~~~--~~~~l~~L~~l~l~~N~~ 200 (218)
|+.|++++|.+..... ....+++|+.+++++|+.
T Consensus 89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 443420300016654211001365320664079963
No 16
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.67 E-value=3.3e-16 Score=85.36 Aligned_cols=127 Identities=24% Similarity=0.334 Sum_probs=74.6
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC---------------
Q ss_conf 97899983999973116845679999988973378578778800026888988973388578999---------------
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI--------------- 133 (218)
Q Consensus 69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~--------------- 133 (218)
.+++.++++++.+.. .+.+..++.++.+++++|.+.+..+ +..++.|+.++++++++.+..
T Consensus 219 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~ 294 (384)
T d2omza2 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294 (384)
T ss_dssp TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred CCCCEEECCCCCCCC--CCHHHCCCCCCHHCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 778788887777789--6134325653410044674478775--355466877545674457877323565222233232
Q ss_pred -----CCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----6137899999989811884888898110289999999814781441389999877778102347878889
Q 027850 134 -----PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEG 203 (218)
Q Consensus 134 -----p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~ 203 (218)
...+..+++++.+++++|++++. + .+..+++|+.|++++|++++. +....+++|+.+++++| .+++
T Consensus 295 n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l-~~l~~l~~L~~L~l~~N-~l~~ 365 (384)
T d2omza2 295 NQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHN-QISD 365 (384)
T ss_dssp SCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSS-CCCB
T ss_pred CCCCCCCCCCHHCCCCEEECCCCCCCCC-C-CCCCCCCCCEEECCCCCCCCC-HHHCCCCCCCEEECCCC-CCCC
T ss_conf 3333322100002467677778877898-4-536689889898989989997-46708999998989799-5899
No 17
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.66 E-value=8.6e-16 Score=83.50 Aligned_cols=128 Identities=25% Similarity=0.396 Sum_probs=103.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147 (218)
Q Consensus 68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 147 (218)
..+++.|++++|.+.+.. .+..+++|+.|++++|.+.. ++ .+..++.|+.++++++..... ..+..+++|+.++
T Consensus 61 l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~ 134 (199)
T d2omxa2 61 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLE 134 (199)
T ss_dssp CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHH
T ss_conf 788675754565566764--01677522311112222222-21-111122322211122222232--1000122367764
Q ss_pred CCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1188488889811028999999981478144138999987777810234787888988
Q 027850 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPE 205 (218)
Q Consensus 148 l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~ 205 (218)
+++|.+. .+ ..+..+++++.+++.+|++++. +....+++|+.|++++| .++..+
T Consensus 135 l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N-~i~~i~ 188 (199)
T d2omxa2 135 LSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSN-KVSDIS 188 (199)
T ss_dssp CCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSS-CCCCCG
T ss_pred HHHHHHC-CC-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEECCCC-CCCCCC
T ss_conf 3111100-23-4333211111122345555677-01167998999978799-799881
No 18
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.63 E-value=3.2e-15 Score=80.95 Aligned_cols=127 Identities=24% Similarity=0.366 Sum_probs=101.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 97899983999973116845679999988973378578778800026888988973388578999613789999998981
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148 (218)
Q Consensus 69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 148 (218)
.+++.++++++.+... ..+..+++|++|++++|.+.+..+ +..+++|+++++++|.+. ..+ .+..++.|+.+++
T Consensus 40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCC
T ss_conf 6878998999999775--202137886757545655667640--167752231111222222-221-1111223222111
Q ss_pred CCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 188488889811028999999981478144138999987777810234787888988
Q 027850 149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPE 205 (218)
Q Consensus 149 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~ 205 (218)
+++.... ...+..+++|+.+++++|.+.. ++....+++++.+.+.+| .+++.+
T Consensus 114 ~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n-~l~~l~ 166 (199)
T d2omxa2 114 FNNQITD--IDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSN-QVTDLK 166 (199)
T ss_dssp CSSCCCC--CGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSS-CCCCCG
T ss_pred CCCCCCC--CCCCCHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf 2222223--2100012236776431111002-343332111111223455-556770
No 19
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.63 E-value=3.1e-15 Score=81.02 Aligned_cols=127 Identities=29% Similarity=0.381 Sum_probs=99.7
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147 (218)
Q Consensus 68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 147 (218)
..+++.|++++|.+.+. + .+..+++|+.|++++|.+.+ ++ .+..++.|+.+++++|.+. .. ..+..++.++.++
T Consensus 67 l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~ 140 (210)
T d1h6ta2 67 LPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY 140 (210)
T ss_dssp CTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCC
T ss_conf 89989876989602586-0-11358621201433333212-22-1212221112234565322-11-2201111122211
Q ss_pred CCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 118848888981102899999998147814413899998777781023478788898
Q 027850 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGP 204 (218)
Q Consensus 148 l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~ 204 (218)
+++|.++. +..+..+++|+.+++++|++++. +....+++|+.|++++| .++..
T Consensus 141 ~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N-~i~~l 193 (210)
T d1h6ta2 141 LGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKN-HISDL 193 (210)
T ss_dssp CCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSS-CCCBC
T ss_pred CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEECCCC-CCCCC
T ss_conf 22233345--43100013321001346430256-45367898999989799-89987
No 20
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.58 E-value=1e-14 Score=78.72 Aligned_cols=81 Identities=25% Similarity=0.468 Sum_probs=43.0
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 02688898897338857899961378999999898118848888981102899999998147814413899998777781
Q 027850 113 LGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE 192 (218)
Q Consensus 113 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~ 192 (218)
+..+..++.+++++|++.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++.+| ...+++|+.
T Consensus 303 ~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~ 377 (384)
T d2omza2 303 ISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQ 377 (384)
T ss_dssp GGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSE
T ss_pred CCHHCCCCEEECCCCCCCCC-C-CCCCCCCCCEEECCCCCCC-CCH-HHCCCCCCCEEECCCCCCCCCHH-HCCCCCCCE
T ss_conf 00002467677778877898-4-5366898898989899899-974-67089999989897995899800-003999999
Q ss_pred CCCCCC
Q ss_conf 023478
Q 027850 193 ESFMNN 198 (218)
Q Consensus 193 l~l~~N 198 (218)
|++++|
T Consensus 378 L~L~~N 383 (384)
T d2omza2 378 LGLNDQ 383 (384)
T ss_dssp EECCCE
T ss_pred EECCCC
T ss_conf 639789
No 21
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.58 E-value=7.9e-15 Score=79.24 Aligned_cols=114 Identities=18% Similarity=0.036 Sum_probs=64.8
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEE
Q ss_conf 988973378578778800026888988973388-5789996137899999989811884888898110289999999814
Q 027850 95 LQYLELYMNNLAGQIPKELGQLKSLISLDLYHN-NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVS 173 (218)
Q Consensus 95 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 173 (218)
.+.++.+++.+. ..|..+..+++++.+++.+| .++...+..|..+++|+.|++++|+++...+..|..+++|++|+|+
T Consensus 10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECC
T ss_conf 996985289976-5860025765657431689866443692122566666721620212477420111245543333226
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 781441389999877778102347878889886676
Q 027850 174 NNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGF 209 (218)
Q Consensus 174 ~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~~~~~ 209 (218)
+|+++...+......+++.+++++||.-|++++.++
T Consensus 89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l 124 (156)
T d2ifga3 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124 (156)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHH
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 787851574563353212433579863388117999
No 22
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.57 E-value=1.3e-14 Score=78.31 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCCCCEEEECC----------CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEEC
Q ss_conf 998743157399----------997899983999973116845679999988973378578778-800026888988973
Q 027850 56 DPCTWFHVTCDA----------DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQI-PKELGQLKSLISLDL 124 (218)
Q Consensus 56 ~~c~~~gv~c~~----------~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~l 124 (218)
+.|....|.|.. +..++.|++++|.+....+..|.++++|++|++++|.+...+ +..|..++.++++.+
T Consensus 6 C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~ 85 (242)
T d1xwdc1 6 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 85 (242)
T ss_dssp EEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 88739999981899887688889988999876991896496686146432321102211242010011222222222111
Q ss_pred CC-CCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 38-8578999613789999998981188488
Q 027850 125 YH-NNLTGPIPPSLSRLSNLKFLRLNGNKLT 154 (218)
Q Consensus 125 s~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 154 (218)
.. |.+....+..+..+++|+.+++++|.+.
T Consensus 86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 86 EKANNLLYINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp ECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 1123432222221222222222234211112
No 23
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.57 E-value=2e-14 Score=77.43 Aligned_cols=120 Identities=25% Similarity=0.277 Sum_probs=54.4
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 78999839999731168456799999889733785787788000268889889733885789996137899999989811
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149 (218)
Q Consensus 70 ~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 149 (218)
.++.++++++.+... ..+..+++|+.|++++|.+.+.. .+..+++|+++++++|+++ .++ .+..+++|+.++++
T Consensus 47 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLE 120 (210)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCC--HHHHHCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCC
T ss_conf 845897827988874--44764899898769896025860--1135862120143333321-222-12122211122345
Q ss_pred CCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8848888981102899999998147814413899998777781023478
Q 027850 150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN 198 (218)
Q Consensus 150 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N 198 (218)
+|.+. . ...+..++.++.++++.|.+.+. +....+++|+.+++++|
T Consensus 121 ~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~~-~~~~~l~~L~~l~l~~n 166 (210)
T d1h6ta2 121 HNGIS-D-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN 166 (210)
T ss_dssp TSCCC-C-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS
T ss_pred CCCCC-C-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
T ss_conf 65322-1-12201111122211222333454-31000133210013464
No 24
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.55 E-value=2.8e-14 Score=76.85 Aligned_cols=129 Identities=23% Similarity=0.376 Sum_probs=91.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--------------
Q ss_conf 997899983999973116845679999988973378578778800026888988973388578999--------------
Q 027850 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI-------------- 133 (218)
Q Consensus 68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-------------- 133 (218)
..+++.+++++|.+.+.. .+..++.++.+++++|.+.. ++ .+..++.|+.++++++...+..
T Consensus 62 l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~ 137 (227)
T d1h6ua2 62 LNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137 (227)
T ss_dssp CTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC
T ss_pred CCCCCEEECCCCEEECCC--CCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCH
T ss_conf 888837635785320254--31123343201211122222-22-222222221221222443311000002301222000
Q ss_pred ------CCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------61378999999898118848888981102899999998147814413899998777781023478788898
Q 027850 134 ------PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGP 204 (218)
Q Consensus 134 ------p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~ 204 (218)
...+...++++.+++++|.+... ..+..+++|+.|++++|++.+. +....+++|++|++++| .++..
T Consensus 138 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~~l~~l~~L~~L~Ls~N-~lt~i 210 (227)
T d1h6ua2 138 LNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNN-QISDV 210 (227)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECTTS-CCCBC
T ss_pred HHHHCHHHHHCCCCCCCCCCCCCCCCCCC--HHHCCCCCCEECCCCCCCCCCC-HHHCCCCCCCEEECCCC-CCCCC
T ss_conf 00000000001021110023333333310--0105646335644588841778-53447999998979599-68998
No 25
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.50 E-value=2.7e-17 Score=90.11 Aligned_cols=111 Identities=23% Similarity=0.279 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850 68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147 (218)
Q Consensus 68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 147 (218)
..+++.|++++|.+.. + +.+..+++|+.|++++|.+. .+|.....++.|+.+++++|.+.. + +.+..+++|+.|+
T Consensus 47 L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~ 121 (198)
T d1m9la_ 47 LKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLY 121 (198)
T ss_dssp TTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCCC-C-CCCCCCCCCCCHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCC
T ss_conf 6046151994468998-6-44247825357341353432-100003322123333333322222-2-2222222341112
Q ss_pred CCCCCCCCCCC-HHCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 11884888898-1102899999998147814413899
Q 027850 148 LNGNKLTGKIP-RELTKLGNLKILDVSNNDLCGTIPT 183 (218)
Q Consensus 148 l~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~ 183 (218)
+++|.++.... ..+..+++|+.|++++|.+....+.
T Consensus 122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 158 (198)
T d1m9la_ 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred CCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 3410212554221236777630234279843467632
No 26
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.43 E-value=1.5e-16 Score=86.90 Aligned_cols=112 Identities=24% Similarity=0.293 Sum_probs=91.0
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCC
Q ss_conf 16845679999988973378578778800026888988973388578999613789999998981188488889811028
Q 027850 84 NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTK 163 (218)
Q Consensus 84 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 163 (218)
..+.++..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++.....++.|+.|++++|.++. + ..+..
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~ 113 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK 113 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred HHHHHHHCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCC
T ss_conf 024677626046151994468998-64-4247825357341353432-100003322123333333322222-2-22222
Q ss_pred CCCCCEEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 9999999814781441389--999877778102347878
Q 027850 164 LGNLKILDVSNNDLCGTIP--TAGSFSKFSEESFMNNPR 200 (218)
Q Consensus 164 l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~l~l~~N~~ 200 (218)
+++|+.|++++|.++.... ....+++|+.+++++||.
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 223411123410212554221236777630234279843
No 27
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.42 E-value=1.1e-12 Score=69.88 Aligned_cols=126 Identities=23% Similarity=0.310 Sum_probs=63.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 78999839999731168456799999889733785787788000268889889733885789996137899999989811
Q 027850 70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149 (218)
Q Consensus 70 ~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 149 (218)
.++.+++.++++.. + +.+..+++|+.+++++|.+.+..| +..++.++++++++|.++ .+ ..+..+++|+.+.++
T Consensus 42 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 42 GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NV-SAIAGLQSIKTLDLT 115 (227)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCC-C-HHHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCC
T ss_conf 86899777999976-6-457448888376357853202543--112334320121112222-22-222222222122122
Q ss_pred CCCCCCC--------------------CCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8848888--------------------98110289999999814781441389999877778102347878889
Q 027850 150 GNKLTGK--------------------IPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEG 203 (218)
Q Consensus 150 ~n~l~~~--------------------~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~ 203 (218)
.+...+. ....+...++|+.+++++|.+.+.. ....+++|+.+++++| .+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n-~l~~ 187 (227)
T d1h6ua2 116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KISD 187 (227)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCC
T ss_pred CCCCCCCCHHCCCCCHHHHHCHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCH-HHCCCCCCEECCCCCC-CCCC
T ss_conf 2443311000002301222000000000000010211100233333333100-1056463356445888-4177
No 28
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.38 E-value=2.6e-12 Score=68.16 Aligned_cols=132 Identities=17% Similarity=0.118 Sum_probs=67.5
Q ss_pred CCEEEEECCCCCCCCCC-CCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC------------
Q ss_conf 97899983999973116-84567999998897337-85787788000268889889733885789996------------
Q 027850 69 NRVTRLDLGNGKLSGNL-VPELGKLERLQYLELYM-NNLAGQIPKELGQLKSLISLDLYHNNLTGPIP------------ 134 (218)
Q Consensus 69 ~~l~~L~Ls~~~l~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p------------ 134 (218)
.+++.+++++|.+...+ +..|..++.++.+.+.. |.+....+..+..++.|+.+++++|.+....+
T Consensus 53 ~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~ 132 (242)
T d1xwdc1 53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132 (242)
T ss_dssp TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEE
T ss_pred CHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf 43232110221124201001122222222211111234322222212222222222342111125543332221111222
Q ss_pred -------------CCCCCC-CCCCEEECCCCCCCCCCCHHCCCCCCCCEE-EEECCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf -------------137899-999989811884888898110289999999-81478144138999-98777781023478
Q 027850 135 -------------PSLSRL-SNLKFLRLNGNKLTGKIPRELTKLGNLKIL-DVSNNDLCGTIPTA-GSFSKFSEESFMNN 198 (218)
Q Consensus 135 -------------~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N 198 (218)
..+..+ ..++.+++++|+++. ++.......++..+ ++++|.++...+.. ..+++|+.|++++|
T Consensus 133 ~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N 211 (242)
T d1xwdc1 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 211 (242)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 22221211122222222223310012200123333-22222220111012123543246424788668999998989799
Q ss_pred CCCC
Q ss_conf 7888
Q 027850 199 PRLE 202 (218)
Q Consensus 199 ~~l~ 202 (218)
+ ++
T Consensus 212 ~-l~ 214 (242)
T d1xwdc1 212 R-IH 214 (242)
T ss_dssp C-CC
T ss_pred C-CC
T ss_conf 2-89
No 29
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.26 E-value=1e-10 Score=61.12 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=5.3
Q ss_pred CEEEEECCCCCCC
Q ss_conf 7899983999973
Q 027850 70 RVTRLDLGNGKLS 82 (218)
Q Consensus 70 ~l~~L~Ls~~~l~ 82 (218)
+++.|++++|.++
T Consensus 59 ~L~~L~Ls~N~l~ 71 (353)
T d1jl5a_ 59 HLESLVASCNSLT 71 (353)
T ss_dssp TCSEEECCSSCCS
T ss_pred CCCEEECCCCCCC
T ss_conf 9888989999796
No 30
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.19 E-value=2e-10 Score=59.86 Aligned_cols=51 Identities=27% Similarity=0.328 Sum_probs=20.2
Q ss_pred CCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998981188488889811028999999981478144138999987777810234787
Q 027850 142 NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP 199 (218)
Q Consensus 142 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~ 199 (218)
+|++|++++|+++ .+|. .+++|+.|++++|+++. +|. .+.+|+.|++++|+
T Consensus 285 ~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~--~~~~L~~L~L~~N~ 335 (353)
T d1jl5a_ 285 SLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPE--LPQNLKQLHVEYNP 335 (353)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCC-CCCC---CCCCCCEEECCCCCCCC-CCC--CCCCCCEEECCCCC
T ss_conf 8898979799168-3566---54879989899996875-453--22888989876991
No 31
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.14 E-value=4.2e-12 Score=67.22 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=29.4
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCC-CCCCCCCCCCCCEEECCCC
Q ss_conf 97899983999973116845679999988973378-57877-8800026888988973388
Q 027850 69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMN-NLAGQ-IPKELGQLKSLISLDLYHN 127 (218)
Q Consensus 69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~ls~n 127 (218)
.+++.++++++.+.+.....+..+++|+.|+++++ .++.. .......++.|++++++++
T Consensus 71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c 131 (284)
T d2astb2 71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131 (284)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 7765145234679867899985189975715100134123554036578874356522453
No 32
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.10 E-value=2.7e-12 Score=68.05 Aligned_cols=57 Identities=28% Similarity=0.315 Sum_probs=26.3
Q ss_pred CEEEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 7899983999973116-84567999998897337857877880002688898897338
Q 027850 70 RVTRLDLGNGKLSGNL-VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126 (218)
Q Consensus 70 ~l~~L~Ls~~~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 126 (218)
+++.+|++++.+.... ...+..+++|++|++.++.+.+..+..+..+++|++|++++
T Consensus 47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~ 104 (284)
T d2astb2 47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104 (284)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred CCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 7887889898457779999997487765145234679867899985189975715100
No 33
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.07 E-value=2.7e-12 Score=68.07 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCCCCEEECCCCCCCCCCCCC----CCCCCCCCEEECCCCCCCCC----CCCCC-CCCCCCCEEECCCCCCCCC----CC
Q ss_conf 999988973378578778800----02688898897338857899----96137-8999999898118848888----98
Q 027850 92 LERLQYLELYMNNLAGQIPKE----LGQLKSLISLDLYHNNLTGP----IPPSL-SRLSNLKFLRLNGNKLTGK----IP 158 (218)
Q Consensus 92 l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~ls~n~l~~~----~p~~~-~~l~~L~~L~l~~n~l~~~----~p 158 (218)
...|+.++++++.+....... +....+|++|++++|.+... +...+ .....|++|++++|.++.. +.
T Consensus 311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 390 (460)
T d1z7xw1 311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 390 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHH
T ss_conf 44433332333410233443213322110111132012101357664001112204567778898979979759999999
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCC----C--CCCCCCCCCCCCCC
Q ss_conf 1102899999998147814413899----9--98777781023478
Q 027850 159 RELTKLGNLKILDVSNNDLCGTIPT----A--GSFSKFSEESFMNN 198 (218)
Q Consensus 159 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~--~~l~~L~~l~l~~N 198 (218)
..+...++|++|++++|.++..... . .....|+.+.+.+|
T Consensus 391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~ 436 (460)
T d1z7xw1 391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436 (460)
T ss_dssp HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 9996299889898999969879999999999747886678989898
No 34
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=98.93 E-value=2.6e-11 Score=63.74 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=56.8
Q ss_pred CCCCCCCEEECCCCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 7999998897337857877-----880002688898897338857899----9613789999998981188488889811
Q 027850 90 GKLERLQYLELYMNNLAGQ-----IPKELGQLKSLISLDLYHNNLTGP----IPPSLSRLSNLKFLRLNGNKLTGKIPRE 160 (218)
Q Consensus 90 ~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 160 (218)
.....++.+++++|.+... +...+...+.|+.|++++|.+... +...+...++|++|++++|.+.......
T Consensus 183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~ 262 (344)
T d2ca6a1 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262 (344)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHH
T ss_conf 23332133543332222222320024332110121122233332222222234443323221111030047567156678
Q ss_pred ----CC--CCCCCCEEEEECCCCCCCC----CCC--CCCCCCCCCCCCCCC
Q ss_conf ----02--8999999981478144138----999--987777810234787
Q 027850 161 ----LT--KLGNLKILDVSNNDLCGTI----PTA--GSFSKFSEESFMNNP 199 (218)
Q Consensus 161 ----~~--~l~~L~~L~Ls~N~l~~~~----~~~--~~l~~L~~l~l~~N~ 199 (218)
+. ....|+.|++++|.+.... ... ...++|+.+++++|.
T Consensus 263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 887763156888898989898698089999999997038999989787980
No 35
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=98.82 E-value=2.9e-10 Score=59.12 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCC----CC
Q ss_conf 99998897337857877----880002688898897338857899-----961378999999898118848888----98
Q 027850 92 LERLQYLELYMNNLAGQ----IPKELGQLKSLISLDLYHNNLTGP-----IPPSLSRLSNLKFLRLNGNKLTGK----IP 158 (218)
Q Consensus 92 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p 158 (218)
.+.++.+.+++|.+... +...+.....++.+++++|.+... +...+...++|+.|++++|.++.. +.
T Consensus 157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~ 236 (344)
T d2ca6a1 157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 236 (344)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 76421110136501355433221111233321335433322222223200243321101211222333322222222344
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCC----C---CCCCCCCCCCCCCCC
Q ss_conf 1102899999998147814413899----9---987777810234787
Q 027850 159 RELTKLGNLKILDVSNNDLCGTIPT----A---GSFSKFSEESFMNNP 199 (218)
Q Consensus 159 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~---~~l~~L~~l~l~~N~ 199 (218)
..+...+.|+.|++++|.+.+.... . .....|+.|++++|.
T Consensus 237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~ 284 (344)
T d2ca6a1 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 284 (344)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 433232211110300475671566788877631568888989898986
No 36
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.78 E-value=4.9e-11 Score=62.50 Aligned_cols=81 Identities=23% Similarity=0.185 Sum_probs=35.2
Q ss_pred CCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-------HC
Q ss_conf 9999988973378578778--80002688898897338857899961378999999898118848888981-------10
Q 027850 91 KLERLQYLELYMNNLAGQI--PKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPR-------EL 161 (218)
Q Consensus 91 ~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-------~~ 161 (218)
.++.|+.|++++|.++... +..+..+++|+.|++++|.+....+-.......++.+++.+|.+...... .+
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~ 142 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR 142 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred HCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 48787886377766667731588986588561000435721342344222033104266489976767666156999999
Q ss_pred CCCCCCCEEE
Q ss_conf 2899999998
Q 027850 162 TKLGNLKILD 171 (218)
Q Consensus 162 ~~l~~L~~L~ 171 (218)
..+++|+.||
T Consensus 143 ~~~P~L~~LD 152 (162)
T d1koha1 143 ERFPKLLRLD 152 (162)
T ss_dssp TTSTTCCEET
T ss_pred HHCCCCCEEC
T ss_conf 9889978799
No 37
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.72 E-value=3.2e-10 Score=58.91 Aligned_cols=134 Identities=20% Similarity=0.149 Sum_probs=83.4
Q ss_pred CCEEEEECCCCCCCCCC----CCCCCCCCCCCEEECCCCCCCCCCCCCC-----CCCCCCCEEECCCCCCCCCCCC----
Q ss_conf 97899983999973116----8456799999889733785787788000-----2688898897338857899961----
Q 027850 69 NRVTRLDLGNGKLSGNL----VPELGKLERLQYLELYMNNLAGQIPKEL-----GQLKSLISLDLYHNNLTGPIPP---- 135 (218)
Q Consensus 69 ~~l~~L~Ls~~~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~ls~n~l~~~~p~---- 135 (218)
..++.++++++.+.... ...+...+.++.+++++|.+.......+ .....|+.++++++.+......
T Consensus 255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~ 334 (460)
T d1z7xw1 255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 334 (460)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 11000013454332123343322111234333444443332245642111012333444333323334102334432133
Q ss_pred CCCCCCCCCEEECCCCCCCCC----CCHHCC-CCCCCCEEEEECCCCCCC----CCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 378999999898118848888----981102-899999998147814413----8999-9877778102347878889
Q 027850 136 SLSRLSNLKFLRLNGNKLTGK----IPRELT-KLGNLKILDVSNNDLCGT----IPTA-GSFSKFSEESFMNNPRLEG 203 (218)
Q Consensus 136 ~~~~l~~L~~L~l~~n~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~~~~-~~l~~L~~l~l~~N~~l~~ 203 (218)
.+....+|++|++++|.+... +...+. ..+.|+.|++++|.++.. +... ...++|++|++++| .++.
T Consensus 335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~ 411 (460)
T d1z7xw1 335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGD 411 (460)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCH
T ss_pred CCCCCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCC-CCCH
T ss_conf 2211011113201210135766400111220456777889897997975999999999962998898989999-6987
No 38
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.67 E-value=2.3e-09 Score=55.12 Aligned_cols=105 Identities=24% Similarity=0.187 Sum_probs=68.4
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCC
Q ss_conf 679999988973378578778800026888988973388578999--613789999998981188488889811028999
Q 027850 89 LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI--PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGN 166 (218)
Q Consensus 89 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 166 (218)
+..+..+..++...+... .++.....++.|+.|++++|+++... +..+..+++|+.|++++|.++...+-.......
T Consensus 38 l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~ 116 (162)
T d1koha1 38 LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116 (162)
T ss_dssp TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCC
T ss_pred HHHCCCHHHCCHHHHHHH-HHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 554664011225556766-6078897487878863777666677315889865885610004357213423442220331
Q ss_pred CCEEEEECCCCCCCCCCC--------CCCCCCCCCC
Q ss_conf 999981478144138999--------9877778102
Q 027850 167 LKILDVSNNDLCGTIPTA--------GSFSKFSEES 194 (218)
Q Consensus 167 L~~L~Ls~N~l~~~~~~~--------~~l~~L~~l~ 194 (218)
|+.+++++|.+....... ..+++|+.|+
T Consensus 117 L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp CSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEC
T ss_conf 042664899767676661569999999889978799
No 39
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=98.15 E-value=4.7e-07 Score=44.94 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=67.8
Q ss_pred CCCEEEEECCCC-CCCCC----CCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCC----CC
Q ss_conf 997899983999-97311----684567999998897337857877----880002688898897338857899----96
Q 027850 68 DNRVTRLDLGNG-KLSGN----LVPELGKLERLQYLELYMNNLAGQ----IPKELGQLKSLISLDLYHNNLTGP----IP 134 (218)
Q Consensus 68 ~~~l~~L~Ls~~-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p 134 (218)
..+++.++++++ .+... +-..+...+.|+.|++++|.+... +...+...+.|+.|++++|.+... +-
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHHH
T ss_conf 99981978279999898999999999763776454012015621567988753100023433003301021459999999
Q ss_pred CCCCCCCCCCEEECCCCCCCCC-------CCHHCCCCCCCCEEEEECCCC
Q ss_conf 1378999999898118848888-------981102899999998147814
Q 027850 135 PSLSRLSNLKFLRLNGNKLTGK-------IPRELTKLGNLKILDVSNNDL 177 (218)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~l~~~-------~p~~~~~l~~L~~L~Ls~N~l 177 (218)
..+...++|++|++++|..... +...+..-++|+.++++.+..
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 99984893898778877688865799999999997299853864868886
No 40
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.69 E-value=7.3e-06 Score=39.70 Aligned_cols=109 Identities=10% Similarity=0.058 Sum_probs=67.4
Q ss_pred CCCCCCCEEECCCC-CCCCC----CCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCC---
Q ss_conf 79999988973378-57877----880002688898897338857899----9613789999998981188488889---
Q 027850 90 GKLERLQYLELYMN-NLAGQ----IPKELGQLKSLISLDLYHNNLTGP----IPPSLSRLSNLKFLRLNGNKLTGKI--- 157 (218)
Q Consensus 90 ~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~--- 157 (218)
.+.+.|+.|+++++ .+... +-..+...+.|+.|++++|.+... +...+...+.|++|++++|.+....
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHH
T ss_conf 28999819782799998989999999997637764540120156215679887531000234330033010214599999
Q ss_pred -CHHCCCCCCCCEEEEECCCCCCCC-------CCC-CCCCCCCCCCCCCC
Q ss_conf -811028999999981478144138-------999-98777781023478
Q 027850 158 -PRELTKLGNLKILDVSNNDLCGTI-------PTA-GSFSKFSEESFMNN 198 (218)
Q Consensus 158 -p~~~~~l~~L~~L~Ls~N~l~~~~-------~~~-~~l~~L~~l~l~~N 198 (218)
-..+..-++|++|++++|.+.... ... ..-++|+.++++.+
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 99999848938987788776888657999999999972998538648688
No 41
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.31 E-value=1.4e-05 Score=38.50 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=65.4
Q ss_pred CCEEEEECCC-CCCCCC----CCCCCCCCCCCCEEECCCCCCCCCC----CCCCCCCCCCCEEECCCCCCCCC----CCC
Q ss_conf 9789998399-997311----6845679999988973378578778----80002688898897338857899----961
Q 027850 69 NRVTRLDLGN-GKLSGN----LVPELGKLERLQYLELYMNNLAGQI----PKELGQLKSLISLDLYHNNLTGP----IPP 135 (218)
Q Consensus 69 ~~l~~L~Ls~-~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~ls~n~l~~~----~p~ 135 (218)
..++.+++++ +.+... +-..+...++|+.|++++|.+.... -..+...+.++.++++++.+... +..
T Consensus 17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~ 96 (166)
T d1io0a_ 17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 96 (166)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHH
T ss_conf 99868876899998989999999888419825743015896117789999987752122101210254322014788999
Q ss_pred CCCCCCCCCEEECC--CCCCCC----CCCHHCCCCCCCCEEEEECCCC
Q ss_conf 37899999989811--884888----8981102899999998147814
Q 027850 136 SLSRLSNLKFLRLN--GNKLTG----KIPRELTKLGNLKILDVSNNDL 177 (218)
Q Consensus 136 ~~~~l~~L~~L~l~--~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l 177 (218)
.+...++++.+++. .|.+.. .+...+...+.|+.|+++.+..
T Consensus 97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 998486524773216778676799999999998499847885818987
No 42
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=95.98 E-value=0.00079 Score=30.73 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=66.0
Q ss_pred CCCCCCCCEEECCC-CCCCCC----CCCCCCCCCCCCEEECCCCCCCCCC----CCCCCCCCCCCEEECCCCCCCCC---
Q ss_conf 67999998897337-857877----8800026888988973388578999----61378999999898118848888---
Q 027850 89 LGKLERLQYLELYM-NNLAGQ----IPKELGQLKSLISLDLYHNNLTGPI----PPSLSRLSNLKFLRLNGNKLTGK--- 156 (218)
Q Consensus 89 ~~~l~~L~~L~L~~-n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~--- 156 (218)
..+.+.|+.|++++ +.++.. +-.++...+.|+.|++++|.+.... ...+.....++.++++++.+...
T Consensus 13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~ 92 (166)
T d1io0a_ 13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 92 (166)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHH
T ss_conf 95599986887689999898999999988841982574301589611778999998775212210121025432201478
Q ss_pred -CCHHCCCCCCCCEEEEE--CCCCCCCC----CCC-CCCCCCCCCCCCCC
Q ss_conf -98110289999999814--78144138----999-98777781023478
Q 027850 157 -IPRELTKLGNLKILDVS--NNDLCGTI----PTA-GSFSKFSEESFMNN 198 (218)
Q Consensus 157 -~p~~~~~l~~L~~L~Ls--~N~l~~~~----~~~-~~l~~L~~l~l~~N 198 (218)
+...+...++|+.++++ .|.+.... ... ...+.|+.+++..+
T Consensus 93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 89999984865247732167786767999999999984998478858189
Done!