Query 027851
Match_columns 218
No_of_seqs 117 out of 419
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 16:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02838 3-hydroxyacyl-CoA deh 100.0 3.4E-75 7.3E-80 499.0 16.1 211 1-212 1-218 (221)
2 KOG3187 Protein tyrosine phosp 100.0 5.2E-67 1.1E-71 445.3 15.5 212 6-217 7-223 (223)
3 PF04387 PTPLA: Protein tyrosi 100.0 4.4E-63 9.5E-68 408.1 10.3 159 55-213 1-164 (164)
4 COG5198 Ptpl Protein tyrosine 100.0 2.4E-52 5.2E-57 340.9 14.5 194 5-211 3-199 (209)
5 PF01151 ELO: GNS1/SUR4 family 94.4 2.7 5.9E-05 36.7 14.9 123 1-128 27-171 (250)
6 PTZ00251 fatty acid elongase; 74.8 20 0.00044 31.9 8.4 133 2-138 51-201 (272)
7 PF07297 DPM2: Dolichol phosph 63.6 6.3 0.00014 28.8 2.3 48 158-207 27-76 (78)
8 PF11044 TMEMspv1-c74-12: Plec 49.5 27 0.00058 23.0 3.2 14 178-191 8-21 (49)
9 COG3114 CcmD Heme exporter pro 29.9 1.1E+02 0.0024 21.7 4.0 17 194-210 30-46 (67)
10 PF14333 DUF4389: Domain of un 26.6 2.3E+02 0.005 20.3 5.5 41 10-50 14-54 (80)
11 PF12669 P12: Virus attachment 23.8 84 0.0018 21.4 2.5 17 192-208 11-27 (58)
12 PRK13454 F0F1 ATP synthase sub 21.9 1.5E+02 0.0032 24.6 4.2 41 171-211 21-69 (181)
13 KOG3071 Fatty acyl-CoA elongas 20.7 6.2E+02 0.014 22.7 10.0 133 1-137 51-202 (274)
No 1
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=100.00 E-value=3.4e-75 Score=499.04 Aligned_cols=211 Identities=30% Similarity=0.541 Sum_probs=194.8
Q ss_pred CCCC-CCcchhHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhhhhHHHHHHHHHHHHHHhHhhhccccCcccchhh
Q 027851 1 MAHQ-RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFM 79 (218)
Q Consensus 1 ~~~~-~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~~~~~Q~~A~lEi~H~~~GlvrS~~~tt~~ 79 (218)
||.+ .+++|.||++||++|++||++||++++.++...|+ .+.|+++++.++++|++|++||+|+++|+||||+.||++
T Consensus 1 ~~~~~~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~-~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~ 79 (221)
T PLN02838 1 MAGFGSLLRRLYLTVYNWVVFIGWAQVLYLAVTTLKESGH-EAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLP 79 (221)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHH
Confidence 4444 34789999999999999999999999999988774 446999999999999999999999999999999999999
Q ss_pred hhcceeeEEE--eeecccccCCchHHHHHHHHHhhhhhchhHHHHhh-cCCCCchhhhhhhccccccccchhhHHHHHHH
Q 027851 80 QWCGRTLFFL--VTACEIVQDHPSLFITFLAWCLIEVIRYPFYALNT-IGACPHWLTYLRYTMFIPLYPIGVLGEMLLLN 156 (218)
Q Consensus 80 QV~sR~~vvw--~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~l-~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i~ 156 (218)
||+||++++| +...||+++++.++.|++|||++|+||||||++++ .|.+|++|+|||||+|+||||+|+.||+.++|
T Consensus 80 QV~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~i~ 159 (221)
T PLN02838 80 QIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLIY 159 (221)
T ss_pred HHHHHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhccceecchHHHHHHHHHH
Confidence 9999999999 78899999999999999999999999999999974 59999999999999999999999999999999
Q ss_pred HhcchhhhhcccccccC---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHchhccch
Q 027851 157 QAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKR 212 (218)
Q Consensus 157 ~aLp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~l~~~ 212 (218)
+|+|++++++.|+.+|| |++|++.+++++++++|+||+|+||+||+|||||+++|+
T Consensus 160 ~al~~~~~~~~~s~~~Pn~~n~sf~~~~~l~~~l~~YiPg~~~ly~hM~~QRkK~l~~k 218 (221)
T PLN02838 160 IALPYMKASEKYCLRMPNKWNFSFDYFYASILVLAIYVPGSPHMYSYMLGQRKKALSKS 218 (221)
T ss_pred HhchhhhcccccchhcCcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999 445555566789999999999999999999999999754
No 2
>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=5.2e-67 Score=445.31 Aligned_cols=212 Identities=36% Similarity=0.659 Sum_probs=201.0
Q ss_pred CcchhHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhhhhHHHHHHHHHHHHHHhHhhhccccCcccchhhhhccee
Q 027851 6 QPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRT 85 (218)
Q Consensus 6 ~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~~~~~Q~~A~lEi~H~~~GlvrS~~~tt~~QV~sR~ 85 (218)
..++.||++||++|++||++++..+......+|+.+++||++++.++++|++|++|++|+.+|+|+|++.+|++||.||+
T Consensus 7 ~~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~sRl 86 (223)
T KOG3187|consen 7 MLKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQVSSRL 86 (223)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeeeecccc
Confidence 35799999999999999999999999998888888888999999999999999999999999999999999999999999
Q ss_pred eEEE--eeecccccCCchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhhhhhhccccccccchhhHHHHHHHHhcchhh
Q 027851 86 LFFL--VTACEIVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMK 163 (218)
Q Consensus 86 ~vvw--~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~l~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i~~aLp~~~ 163 (218)
+++| ++..|+++.++.+..+++||+++|+|||+||+++++|..|++++|||||+|++|||+|++||+.++++|+|+.+
T Consensus 87 ~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i~~al~~~~ 166 (223)
T KOG3187|consen 87 FILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGVLPKLLTWLRYTLFILLYPIGITSELLTLYAALPAAG 166 (223)
T ss_pred eehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHhhhhhheeeecceehhhHHHHHHHHHHhc
Confidence 9999 88889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccC---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHchhccchhhhhc
Q 027851 164 EKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 217 (218)
Q Consensus 164 ~~~~~s~~mP---~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~l~~~~~~~k 217 (218)
+++.||++|| |.+||+.+|+++++++|+||+|++|+||.+||||.+++++.|||
T Consensus 167 ~~~~~sv~~pn~~n~~f~~~~fL~i~ml~Yipgf~~l~~hm~~QRkk~l~~~r~~~~ 223 (223)
T KOG3187|consen 167 ETERFSVVMPNKLNISFDFFSFLWIVMLLYIPGFYQLYSHMLKQRKKILKKKRKKKK 223 (223)
T ss_pred ccceeEEEcCccccchhHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhcccccccCC
Confidence 9999999999 55666667788889999999999999999999999987766653
No 3
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=100.00 E-value=4.4e-63 Score=408.07 Aligned_cols=159 Identities=45% Similarity=0.816 Sum_probs=153.6
Q ss_pred HHHHHHHHhHhhhccccCcccchhhhhcceeeEEE--eeecccccCCchHHHHHHHHHhhhhhchhHHHHhhcCCCCchh
Q 027851 55 QTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFL--VTACEIVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWL 132 (218)
Q Consensus 55 Q~~A~lEi~H~~~GlvrS~~~tt~~QV~sR~~vvw--~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~l~~~~p~~L 132 (218)
|++|++||+|+++|+||||+.||++||+||++++| +...||+++++++++|++|||++|+|||+||+++++|.+|++|
T Consensus 1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p~~L 80 (164)
T PF04387_consen 1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVPYWL 80 (164)
T ss_pred CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCCchHH
Confidence 89999999999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccchhhHHHHHHHHhcchhhhhcccccccC---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHchhc
Q 027851 133 TYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKL 209 (218)
Q Consensus 133 ~WLRYs~FivLYPlGv~~E~~~i~~aLp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~l 209 (218)
+|||||+|+||||+|++||+.++++|+|++++++.|+.+|| |++|++++++.+++++|+||+|+||+||++||||++
T Consensus 81 ~WLRYs~FivLYPlG~~~E~~~~~~al~~~~~~~~~~~~~pn~~n~~~~~~~~~~~~l~~y~pg~~~ly~hM~~qRrK~l 160 (164)
T PF04387_consen 81 TWLRYSAFIVLYPLGILSELLLIYRALPYIKETKRYSVRMPNSWNFSFSYYYFLIFVLLLYIPGFPFLYSHMLKQRRKKL 160 (164)
T ss_pred HHHHHhhHhhccchHHHHHHHHHHHhCcccccCCeeeeecCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 666777888999999999999999999999999999
Q ss_pred cchh
Q 027851 210 GKRQ 213 (218)
Q Consensus 210 ~~~~ 213 (218)
+|+|
T Consensus 161 ~~~~ 164 (164)
T PF04387_consen 161 GKKK 164 (164)
T ss_pred ccCC
Confidence 8764
No 4
>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=2.4e-52 Score=340.86 Aligned_cols=194 Identities=27% Similarity=0.411 Sum_probs=169.7
Q ss_pred CCcchhHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhhhhHHHHHHHHHHHHHHhHhhhccccCcccchhhhhcce
Q 027851 5 RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGR 84 (218)
Q Consensus 5 ~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~~~~~Q~~A~lEi~H~~~GlvrS~~~tt~~QV~sR 84 (218)
+.++-.||-+||+++|.+|.+++.+....+...++++ .+++..+...++|++|++|+.|+..|.|+|++.||.+||.||
T Consensus 3 k~l~isyl~lYN~~s~f~w~~vlll~~lv~~kt~dpa-~f~et~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SR 81 (209)
T COG5198 3 KALPISYLRLYNTASCFIWCIVLLLASLVFYKTMDPA-VFHETLRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISR 81 (209)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHH
Confidence 3455689999999999999999998887777777766 488899999999999999999999999999999999999999
Q ss_pred eeEEE--eeecccccCCchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhhhhhhccccccccchhhHHHHHHHHhcchh
Q 027851 85 TLFFL--VTACEIVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYM 162 (218)
Q Consensus 85 ~~vvw--~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~l~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i~~aLp~~ 162 (218)
++++| +.+...+-++|.++++.+|||++|++||.||++++-| .|..|+|+|||+|.+|||+|+.+|+.|++.+..-.
T Consensus 82 l~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~lng-~p~~l~~lRYNlFlilyPiG~~sE~~~~~~~~naa 160 (209)
T COG5198 82 LFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRLNG-IPNTLRVLRYNLFLILYPIGFVSEMYCLRALYNAA 160 (209)
T ss_pred HHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 99999 4344444458999999999999999999999999966 79999999999999999999999999999987655
Q ss_pred hhhcccccccCCccchHH-HHHHHHHHHhhhhHHHHHHHHHHHHchhccc
Q 027851 163 KEKNIFANFFAGLPFSYY-NVVQVVFVMYPFAWIKLYSHMLKQRGSKLGK 211 (218)
Q Consensus 163 ~~~~~~s~~mP~~~f~~~-~~~~~~l~~yipg~~~ly~hM~~QRkK~l~~ 211 (218)
+. .| ++. -.+.+++++|+||||+||+||++||||..+.
T Consensus 161 ~~--~~---------Sllk~vl~~~ml~YiPGf~~lf~HMlaQRkk~~K~ 199 (209)
T COG5198 161 GK--IF---------SLLKVVLPIVMLLYIPGFIFLFSHMLAQRKKSRKV 199 (209)
T ss_pred HH--HH---------HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 44 22 222 2356788999999999999999999999863
No 5
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=94.36 E-value=2.7 Score=36.66 Aligned_cols=123 Identities=15% Similarity=0.264 Sum_probs=73.8
Q ss_pred CCCCCCc-chhHHhHHhHHHHHHHHHHHHHHHHHHHc----cCC----c------ccch--hhhhHHHHHHHHHHHHHHh
Q 027851 1 MAHQRQP-IKLYLFGYNSLQAAGWIVAIFMLLSNLLS----TKS----I------AGTF--ASAGEIIWILQTAAFLEVV 63 (218)
Q Consensus 1 ~~~~~~l-~~~YL~~YN~~~~~gW~~il~~~~~~~~~----~g~----~------~~~y--~~~~~~~~~~Q~~A~lEi~ 63 (218)
|++.++. -+.-+.+||+++++.=++.+..++..... .|- . .+.+ +.++....++=.-=+.|.+
T Consensus 27 m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~~~~fylSK~~Ell 106 (250)
T PF01151_consen 27 MKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVDFDPDSYSSGRVGFWYWLFYLSKYYELL 106 (250)
T ss_pred HhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 3444444 37789999999998888877777733211 110 1 1111 1122222233344478888
Q ss_pred HhhhccccCcccchhhhhcceee---EEE-eee-cccccCCchHHHHHHHHHhhhhhchhHHHHhhcCCC
Q 027851 64 HGAVGILPSGVWLPFMQWCGRTL---FFL-VTA-CEIVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 128 (218)
Q Consensus 64 H~~~GlvrS~~~tt~~QV~sR~~---vvw-~~~-~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~l~~~~ 128 (218)
-..+=+.|-+ ..+++||.==.. ..| ... .|.. ......+.=+..-++-|+||+...+|..
T Consensus 107 DTvflvLrkK-~lsfLHvYHH~~~~~~~w~~~~~~~~~----~~~~~~~~N~~VH~iMY~YY~l~a~g~~ 171 (250)
T PF01151_consen 107 DTVFLVLRKK-QLSFLHVYHHASTLLYCWISYKYGPGG----QIWFIAALNSFVHVIMYSYYFLSALGIR 171 (250)
T ss_pred HHHHHHHhCC-CcchhHHhhhhhhhhhhhheeeecccc----chhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888 888999874444 444 222 1111 1222234447899999999999988865
No 6
>PTZ00251 fatty acid elongase; Provisional
Probab=74.80 E-value=20 Score=31.93 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=77.8
Q ss_pred CCCCCcc--hhHHhHHhHHHHHHHHHHHHHHHH----HHHccCC-------cccc-h-hhhhHHHHHHHHHHHHHHhHhh
Q 027851 2 AHQRQPI--KLYLFGYNSLQAAGWIVAIFMLLS----NLLSTKS-------IAGT-F-ASAGEIIWILQTAAFLEVVHGA 66 (218)
Q Consensus 2 ~~~~~l~--~~YL~~YN~~~~~gW~~il~~~~~----~~~~~g~-------~~~~-y-~~~~~~~~~~Q~~A~lEi~H~~ 66 (218)
+++++.. +.-+.+||++|++.=++.+...+. .....|- ..+. + ...+....++=.-=+.|.+-..
T Consensus 51 ~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTv 130 (272)
T PTZ00251 51 HGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLRKYGLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTF 130 (272)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHh
Confidence 4566776 899999999999888887777753 2222220 0111 1 1223333343344478888888
Q ss_pred hccccCcccchhhhhccee---eEEEeeecccccCCchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhhhhhhc
Q 027851 67 VGILPSGVWLPFMQWCGRT---LFFLVTACEIVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYT 138 (218)
Q Consensus 67 ~GlvrS~~~tt~~QV~sR~---~vvw~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~l~~~~p~~L~WLRYs 138 (218)
+=+.|-+ ..++++|.==. ..+|....+ ...........=+...++=|+||.+..+|..+..=.|.||-
T Consensus 131 F~VLRKK-qvsFLHvYHH~~~~~~~w~~~~~---g~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~~~~~~kk~I 201 (272)
T PTZ00251 131 FLIMGGK-KLPFLSWFHHVTIFLYAWMSYQQ---GSSIWICAAAMNYFVHSIMYFYFALSEAGFKKLVKPFAMYI 201 (272)
T ss_pred hhhhcCC-CchHHHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Confidence 8777877 67778776333 333421111 11122122344467999999999999888652211266653
No 7
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=63.58 E-value=6.3 Score=28.83 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=27.7
Q ss_pred hcchhhhhcc-cccccC-CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHch
Q 027851 158 AFPYMKEKNI-FANFFA-GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGS 207 (218)
Q Consensus 158 aLp~~~~~~~-~s~~mP-~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK 207 (218)
-+|++++++. ++...| .+++..+-++.......+ |. ++-..|+|++||
T Consensus 27 llPFvd~d~~i~~~F~Pr~yAi~lP~~lll~~~~~v-g~-f~g~vmik~~~k 76 (78)
T PF07297_consen 27 LLPFVDEDHPIHSFFPPREYAIILPIFLLLLGLSGV-GT-FLGYVMIKSKKK 76 (78)
T ss_pred HhcccCCCchHHHcCCCHHHHHHHHHHHHHHHHHHH-HH-HHHHHHhhcccc
Confidence 4577777654 555666 666666665433333222 33 345688888775
No 8
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=49.51 E-value=27 Score=22.98 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHhh
Q 027851 178 SYYNVVQVVFVMYP 191 (218)
Q Consensus 178 ~~~~~~~~~l~~yi 191 (218)
.|+-+.++.+..|+
T Consensus 8 iFsvvIil~If~~i 21 (49)
T PF11044_consen 8 IFSVVIILGIFAWI 21 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 9
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=29.87 E-value=1.1e+02 Score=21.69 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHchhcc
Q 027851 194 WIKLYSHMLKQRGSKLG 210 (218)
Q Consensus 194 ~~~ly~hM~~QRkK~l~ 210 (218)
...+-.|-.+|||+.|+
T Consensus 30 l~~l~v~sv~qrr~iL~ 46 (67)
T COG3114 30 LAVLVVHSVLQRRAILR 46 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567899999999994
No 10
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=26.64 E-value=2.3e+02 Score=20.34 Aligned_cols=41 Identities=5% Similarity=0.035 Sum_probs=30.3
Q ss_pred hHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhhhhHH
Q 027851 10 LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEI 50 (218)
Q Consensus 10 ~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~ 50 (218)
.+.++++.++++.|..+++..+..+..+..+...++.....
T Consensus 14 ~~~ivl~~~~~~~~~~~~~q~~~~L~tg~~p~~L~~f~~~l 54 (80)
T PF14333_consen 14 PFAIVLSLASIVLGVLVLIQWFAILFTGRYPEPLFDFGAGL 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHH
Confidence 46778899999999999999998888855555444444443
No 11
>PF12669 P12: Virus attachment protein p12 family
Probab=23.77 E-value=84 Score=21.42 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHchh
Q 027851 192 FAWIKLYSHMLKQRGSK 208 (218)
Q Consensus 192 pg~~~ly~hM~~QRkK~ 208 (218)
..++.+..+++|++|+-
T Consensus 11 ~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 11 AVAYVAIRKFIKDKKKG 27 (58)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 34455678999998873
No 12
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=21.90 E-value=1.5e+02 Score=24.55 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=22.2
Q ss_pred ccCCccch-----HHHHHHHHHHHhhhhHHH---HHHHHHHHHchhccc
Q 027851 171 FFAGLPFS-----YYNVVQVVFVMYPFAWIK---LYSHMLKQRGSKLGK 211 (218)
Q Consensus 171 ~mP~~~f~-----~~~~~~~~l~~yipg~~~---ly~hM~~QRkK~l~~ 211 (218)
.||.++++ +-++++.++++|+....+ =...++.+|++...+
T Consensus 21 gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~ 69 (181)
T PRK13454 21 GMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITN 69 (181)
T ss_pred CCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47744442 223344444444443222 256889999988843
No 13
>KOG3071 consensus Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme [Lipid transport and metabolism]
Probab=20.70 E-value=6.2e+02 Score=22.72 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=75.8
Q ss_pred CCCCCCcc-hhHHhHHhHHHHHHHHHHHHHHHHHHHccCC-------cc-cchhhhhHHHHHHHHH---HHHHHhHhhhc
Q 027851 1 MAHQRQPI-KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKS-------IA-GTFASAGEIIWILQTA---AFLEVVHGAVG 68 (218)
Q Consensus 1 ~~~~~~l~-~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~-------~~-~~y~~~~~~~~~~Q~~---A~lEi~H~~~G 68 (218)
|++.++++ +.=+.+||+.|.+.=++++..........+. .. ...+.-+....+++.. =++|.+-..+=
T Consensus 51 m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFf 130 (274)
T KOG3071|consen 51 MRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLRCQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFF 130 (274)
T ss_pred hccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceEEEecCCCCCCcceeehHHHHHHHHHHHHHHHhheee
Confidence 44445554 6778899999987766655444443333321 01 1123333444454432 47787777776
Q ss_pred cccC-cccchhhhhcceeeEE---E--eeecccccCCchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhh-hhhh
Q 027851 69 ILPS-GVWLPFMQWCGRTLFF---L--VTACEIVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLT-YLRY 137 (218)
Q Consensus 69 lvrS-~~~tt~~QV~sR~~vv---w--~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~l~~~~p~~L~-WLRY 137 (218)
+.|. .=-.|+.||.==..++ | ....|..+ .+.. .+-=+...+|=|.||..+..|....+-. |-.|
T Consensus 131 VLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~-~~~~---~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky 202 (274)
T KOG3071|consen 131 VLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGH-GFFA---ILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKY 202 (274)
T ss_pred EEEccCCceEEEEEEecchHHHhhhheeEEeCCce-eeee---eehhhhHHHHHHHHHHHHhhCcCccccchHHHH
Confidence 6666 3346788887443333 3 33333211 1111 1122578999999999999998776666 5555
Done!