Query 027851
Match_columns 218
No_of_seqs 114 out of 419
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 18:07:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027851.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2220-2223//hhsearch_pdb/027851hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a1i_A DNA excision repair pro 1.0 1 1 17.8 -3.6 20 102-121 112-131 (146)
2 2xc8_A Gene 22 product; siphov 1.0 1 1 14.4 -6.8 11 138-148 91-101 (146)
3 1s99_A YKOF; thiamin-binding p 1.0 1 1 12.3 1.2 32 141-172 119-150 (200)
4 2kpa_A ARNO(375-400); hydrolas 1.0 1 1 11.4 -0.2 15 198-212 6-20 (26)
5 2yf0_A Myotubularin-related pr 1.0 1 1 9.7 -1.8 20 63-82 334-353 (512)
6 2i1y_A Receptor-type tyrosine- 1.0 1 1 9.6 -3.1 16 194-209 260-275 (301)
7 3fap_B FRAP, FKBP12-rapamycin 1.0 1 1 9.6 1.4 54 55-111 28-85 (94)
8 1zsq_A Myotubularin-related pr 1.0 1 1 9.4 -2.2 20 63-82 346-365 (528)
9 2r0b_A Serine/threonine/tyrosi 1.0 1 1 9.3 -2.4 12 195-206 121-132 (154)
10 3sci_E Spike glycoprotein; bet 1.0 1 1 9.2 -0.4 28 111-139 5-40 (228)
No 1
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=1.00 E-value=1 Score=17.84 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHCHHHHH
Q ss_conf 77889998766320125788
Q 027851 102 LFITFLAWCLIEVIRYPFYA 121 (218)
Q Consensus 102 ~~~l~~aWsi~EiiRY~yY~ 121 (218)
-+++++|||.-|..||-=..
T Consensus 112 ~~TLiLawS~eEaa~Yle~~ 131 (146)
T 2a1i_A 112 DCTLILAWSPEEAGRYLETY 131 (146)
T ss_dssp TCEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHH
T ss_conf 98899987879999999998
No 2
>2xc8_A Gene 22 product; siphoviridae, GRAM-positive phage, viral protein; 2.35A {Bacillus phage SPP1}
Probab=1.00 E-value=1 Score=14.44 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=5.5
Q ss_pred CCCCCCCCCHH
Q ss_conf 14532223024
Q 027851 138 TMFIPLYPIGV 148 (218)
Q Consensus 138 t~FivLYPlGv 148 (218)
|--++.||+.+
T Consensus 91 nerlimypvsv 101 (146)
T 2xc8_A 91 NERLIMYPVSV 101 (146)
T ss_dssp SSEEEEEEEEE
T ss_pred CEEEEEEEEEE
T ss_conf 70799976689
No 3
>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB: 1sbr_A* 1s7h_A
Probab=1.00 E-value=1 Score=12.27 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCC
Q ss_conf 32223024677999997320013202311125
Q 027851 141 IPLYPIGVLGEMLLLNQAFPYMKEKNIFANFF 172 (218)
Q Consensus 141 ivLYPlGv~~E~~~i~~alp~~~~~~~~s~~l 172 (218)
+-|||+|----|-.|+..+...++.+.+.-+.
T Consensus 119 fslYpmg~~~ym~~I~~~i~~a~~~g~~~~s~ 150 (200)
T 1s99_A 119 FALYPMNEPDYMGLIMEAVDIAKAQGTFVQGV 150 (200)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99874799338999999999999728666884
No 4
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=1.00 E-value=1 Score=11.38 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=10.6
Q ss_pred HHHHHHHHCHHCCCH
Q ss_conf 999999980010201
Q 027851 198 YSHMLKQRGSKLGKR 212 (218)
Q Consensus 198 y~hM~~QRkk~l~~~ 212 (218)
+-+|++.|||+....
T Consensus 6 FYdml~~RKkKi~~~ 20 (26)
T 2kpa_A 6 FYEMLAARKKRISVK 20 (26)
T ss_dssp HHHHHTCTHHHHHCH
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 899999999882346
No 5
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=9.71 Aligned_cols=20 Identities=15% Similarity=-0.019 Sum_probs=9.9
Q ss_pred HHHHHCCCCCCCCCHHHHHC
Q ss_conf 67452244676530245320
Q 027851 63 VHGAVGILPSGVWLPFMQWC 82 (218)
Q Consensus 63 ~H~~~GlvrS~~~~t~~QV~ 82 (218)
+|+--|+-|++.++++.|+.
T Consensus 334 VhcsDGwDrT~ql~SLaqll 353 (512)
T 2yf0_A 334 VHCSDGWDRTSQVCSLGSLL 353 (512)
T ss_dssp ECTTTSSSHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHH
T ss_conf 98888866418899999998
No 6
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein tyrosine phosphatase precursor, phosph structural genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Probab=1.00 E-value=1 Score=9.58 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHCHHC
Q ss_conf 9999999999980010
Q 027851 194 WIKLYSHMLKQRGSKL 209 (218)
Q Consensus 194 ~~~ly~hM~~QRkk~l 209 (218)
.+....+|.+||....
T Consensus 260 v~~~v~~lR~qR~~~V 275 (301)
T 2i1y_A 260 IAATLEHVRDQRPGLV 275 (301)
T ss_dssp HHHHHHHHHTTSTTCS
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999997475216
No 7
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=1.00 E-value=1 Score=9.57 Aligned_cols=54 Identities=22% Similarity=0.143 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCCCC-CCHHHHHCCEEEEEE---EEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999998674522446765-302453203015788---5203433588447788999876
Q 027851 55 QTAAFLEVVHGAVGILPSGV-WLPFMQWCGRTLFFL---VTACEIVQDHPSLFITFLAWCL 111 (218)
Q Consensus 55 Q~~a~lEi~H~~~GlvrS~~-~~t~~QV~sRl~iv~---~~~~p~~~~~~~~~~l~~aWsi 111 (218)
..+++||-+|..+.--+... =.+|.|..||..--- +..+.+.+ -..-+--||.+
T Consensus 28 ~m~~~L~pLh~~l~~~peT~~E~sF~~~fG~~L~~A~~~~~~y~~t~---~~~~l~qAWdi 85 (94)
T 3fap_B 28 GMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSG---NVKDLTQAWDL 85 (94)
T ss_dssp HHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHH
T ss_conf 99999999999773799978799999998799999999999998869---83469999999
No 8
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=1.00 E-value=1 Score=9.37 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=9.8
Q ss_pred HHHHHCCCCCCCCCHHHHHC
Q ss_conf 67452244676530245320
Q 027851 63 VHGAVGILPSGVWLPFMQWC 82 (218)
Q Consensus 63 ~H~~~GlvrS~~~~t~~QV~ 82 (218)
+|+--|+-|+..++++.|+.
T Consensus 346 vhcsdGwDrT~ql~SLaqll 365 (528)
T 1zsq_A 346 VHSSDGWDRTAQLTSLAMLM 365 (528)
T ss_dssp EECSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHH
T ss_conf 97888865148999999998
No 9
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=9.25 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999980
Q 027851 195 IKLYSHMLKQRG 206 (218)
Q Consensus 195 ~~ly~hM~~QRk 206 (218)
-..+.++.++|.
T Consensus 121 ~~a~~~v~~~R~ 132 (154)
T 2r0b_A 121 RDAFAYVQERRF 132 (154)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999799
No 10
>3sci_E Spike glycoprotein; beta sheet, hydrolase-viral protein complex; 2.90A {Sars coronavirus}
Probab=1.00 E-value=1 Score=9.18 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHCHHHHHHHHCCCC--------CCHHHHHHHCC
Q ss_conf 663201257887630898--------82134301014
Q 027851 111 LIEVIRYPFYALNTIGAC--------PHWLTYLRYTM 139 (218)
Q Consensus 111 i~EiiRY~yY~~~l~g~~--------p~~L~WLRYt~ 139 (218)
..|++|+| -.-+.++.+ |..+.|=|+..
T Consensus 5 ~g~V~R~P-nl~~~C~~e~~Lna~~pPsP~~WeR~~f 40 (228)
T 3sci_E 5 SGDVVRFP-NITNLCPFGEVFNATKFPSVYAWERKKI 40 (228)
T ss_dssp --------------CGGGGTTTCSCCCBSTTCEEEEC
T ss_pred CEEEEECC-CCCCCCCHHHHHCCCCCCCCCEEEEEEE
T ss_conf 13689768-9856698678754799998722556776
Done!