Query 027851
Match_columns 218
No_of_seqs 114 out of 419
Neff 6.3
Searched_HMMs 13730
Date Tue Mar 26 18:08:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027851.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2220-2223//hhsearch_scop/027851hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s99a_ d.58.48.2 (A:) Putativ 26.6 11 0.00079 14.8 1.2 32 139-170 109-140 (189)
2 d2a1ia1 c.52.1.20 (A:99-227) D 14.0 3.5 0.00026 17.4 -3.6 26 102-128 95-120 (129)
3 d1k1va_ a.37.1.1 (A:) Mafg {Mo 10.0 38 0.0028 11.8 0.6 12 201-212 28-39 (41)
4 d2db7a1 a.273.1.1 (A:3-57) Hai 5.4 69 0.0051 10.4 0.5 13 106-118 16-28 (55)
5 d2d81a1 c.69.1.37 (A:21-338) P 5.3 70 0.0051 10.4 0.5 21 129-149 245-265 (318)
6 d2e74h1 f.23.27.1 (H:3-29) Pet 4.3 86 0.0062 9.9 1.7 13 102-114 8-20 (27)
7 d1zt2b1 a.262.1.1 (B:3-209) DN 2.4 1.7E+02 0.012 8.2 -0.0 14 105-118 80-93 (207)
8 d1qyra_ c.66.1.24 (A:) High le 2.2 1.9E+02 0.014 8.0 1.0 19 194-212 194-212 (252)
9 d2dlqa4 g.37.1.1 (A:8-34) GLI- 2.2 1.9E+02 0.014 8.0 1.6 14 3-16 7-20 (27)
10 d1zq9a1 c.66.1.24 (A:36-313) P 2.2 2E+02 0.014 7.9 0.4 22 194-215 188-209 (278)
No 1
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=26.65 E-value=11 Score=14.78 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=26.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCC
Q ss_conf 45322230246779999973200132023111
Q 027851 139 MFIPLYPIGVLGEMLLLNQAFPYMKEKNIFAN 170 (218)
Q Consensus 139 ~FivLYPlGv~~E~~~i~~alp~~~~~~~~s~ 170 (218)
.=+-|||+|.---|-.||..+...++.+.|.-
T Consensus 109 ~qfsLYpmg~~d~m~~Iy~~id~~k~~G~~~~ 140 (189)
T d1s99a_ 109 CQFALYPMNEPDYMGLIMEAVDIAKAQGTFVQ 140 (189)
T ss_dssp EEEEEEETTCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 36998856885289999999999997087755
No 2
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.01 E-value=3.5 Score=17.43 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHCCCC
Q ss_conf 778899987663201257887630898
Q 027851 102 LFITFLAWCLIEVIRYPFYALNTIGAC 128 (218)
Q Consensus 102 ~~~l~~aWsi~EiiRY~yY~~~l~g~~ 128 (218)
-+++++|||.-|..||-= .++.....
T Consensus 95 ~~TLilaws~eEaa~YlE-~~k~~e~~ 120 (129)
T d2a1ia1 95 DCTLILAWSPEEAGRYLE-TYKAYEQK 120 (129)
T ss_dssp TCEEEEESSHHHHHHHHH-HHHTCCSS
T ss_pred CCEEEEECCHHHHHHHHH-HHHHHCCC
T ss_conf 978999868999999999-99875589
No 3
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.01 E-value=38 Score=11.81 Aligned_cols=12 Identities=50% Similarity=0.581 Sum_probs=7.4
Q ss_pred HHHHHCHHCCCH
Q ss_conf 999980010201
Q 027851 201 MLKQRGSKLGKR 212 (218)
Q Consensus 201 M~~QRkk~l~~~ 212 (218)
=+|||++.++.+
T Consensus 28 ~lKqrRRTLKNR 39 (41)
T d1k1va_ 28 QLKQRRRTLKNR 39 (41)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHCC
T ss_conf 999999866117
No 4
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.42 E-value=69 Score=10.39 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=7.6
Q ss_pred HHHHHHHHHHCHH
Q ss_conf 9998766320125
Q 027851 106 FLAWCLIEVIRYP 118 (218)
Q Consensus 106 ~~aWsi~EiiRY~ 118 (218)
-+.=|..||.||.
T Consensus 16 GF~ECa~EV~RyL 28 (55)
T d2db7a1 16 GFRECLAEVARYL 28 (55)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 5999999999996
No 5
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]}
Probab=5.33 E-value=70 Score=10.35 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=16.2
Q ss_pred CCHHHHHHHCCCCCCCCCHHH
Q ss_conf 821343010145322230246
Q 027851 129 PHWLTYLRYTMFIPLYPIGVL 149 (218)
Q Consensus 129 p~~L~WLRYt~FivLYPlGv~ 149 (218)
..+-.|..-|-||||||=+..
T Consensus 245 tg~~~~ad~~~~ivlyPq~~~ 265 (318)
T d2d81a1 245 TGYNKWADTNNMIILYPQAIP 265 (318)
T ss_dssp SCHHHHHTTTTEEEEECCBCC
T ss_pred CCHHHHHHHCCEEEEECCCCC
T ss_conf 877899986891999577646
No 6
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.27 E-value=86 Score=9.89 Aligned_cols=13 Identities=15% Similarity=0.616 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7788999876632
Q 027851 102 LFITFLAWCLIEV 114 (218)
Q Consensus 102 ~~~l~~aWsi~Ei 114 (218)
..+.++.||++-+
T Consensus 8 ~llvvftwsiamv 20 (27)
T d2e74h1 8 ALLVVFTWSIAMV 20 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHEEEEE
T ss_conf 8888763223468
No 7
>d1zt2b1 a.262.1.1 (B:3-209) DNA primase large subunit PriB, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=2.37 E-value=1.7e+02 Score=8.24 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHCHH
Q ss_conf 89998766320125
Q 027851 105 TFLAWCLIEVIRYP 118 (218)
Q Consensus 105 l~~aWsi~EiiRY~ 118 (218)
++--|+.+|-=|--
T Consensus 80 li~R~a~aEA~ra~ 93 (207)
T d1zt2b1 80 LIRRYAYAEAKQFR 93 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 8
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}
Probab=2.25 E-value=1.9e+02 Score=8.04 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCHHCCCH
Q ss_conf 9999999999980010201
Q 027851 194 WIKLYSHMLKQRGSKLGKR 212 (218)
Q Consensus 194 ~~~ly~hM~~QRkk~l~~~ 212 (218)
+-.+-..++.||||.+++.
T Consensus 194 ~~~~~~~~F~~rRK~l~~~ 212 (252)
T d1qyra_ 194 LSRITTEAFNQRRKTIRNS 212 (252)
T ss_dssp HHHHHHHHHHTTTSBHHHH
T ss_pred HHHHHHHHHCCCHHHHHHH
T ss_conf 9999999871453889998
No 9
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.25 E-value=1.9e+02 Score=8.04 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 87885026785985
Q 027851 3 HQRQPIKLYLFGYN 16 (218)
Q Consensus 3 ~~~~l~~~YL~~YN 16 (218)
|+.-+++-||-.-|
T Consensus 7 ~k~f~skyylkvhn 20 (27)
T d2dlqa4 7 HKKFLSKYYLKVHN 20 (27)
T ss_dssp CCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
T ss_conf 78888767553103
No 10
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.15 E-value=2e+02 Score=7.92 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCHHCCCHHHH
Q ss_conf 9999999999980010201442
Q 027851 194 WIKLYSHMLKQRGSKLGKRQEK 215 (218)
Q Consensus 194 ~~~ly~hM~~QRkk~l~~~~~~ 215 (218)
+..+-.+.+.||||.+++.-++
T Consensus 188 ~~~~vr~~F~~RRK~l~n~Lk~ 209 (278)
T d1zq9a1 188 WDGLVRITFVRKNKTLSAAFKS 209 (278)
T ss_dssp HHHHHHHHHTTTTSBHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999998867407769998744
Done!