Query 027852
Match_columns 218
No_of_seqs 116 out of 424
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 18:12:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027852.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2220-2223//hhsearch_pdb/027852hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i3f_A Glycolipid transfer-lik 1.0 1 1 331.2 19.5 195 2-211 4-200 (224)
2 3rzn_A GLTP, glycolipid transf 1.0 1 1 324.5 17.9 186 25-212 12-208 (209)
3 3kv0_A HET-C2; GLTP, glycolipi 1.0 1 1 324.1 13.2 191 4-206 11-206 (209)
4 4a57_A Nucleoside-triphosphata 1.0 1 1 15.2 -4.2 30 28-60 431-460 (611)
5 3d1b_A RNA-induced transcripti 1.0 1 1 13.8 2.7 83 101-198 19-114 (124)
6 2jtt_C Calcyclin-binding prote 1.0 1 1 12.9 3.5 27 111-137 8-34 (35)
7 1lwu_A Fibrinogen alpha-1 chai 1.0 1 1 12.1 -0.0 49 53-101 19-81 (119)
8 1t3y_A Coactosin-like protein; 1.0 1 1 11.8 0.8 10 129-138 8-17 (141)
9 1z21_A YOP proteins translocat 1.0 1 1 11.7 3.2 45 41-86 60-104 (112)
10 2kfp_A Pspto_3016 protein; alp 1.0 1 1 11.6 0.4 21 122-142 101-121 (125)
No 1
>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A
Probab=1.00 E-value=1 Score=331.20 Aligned_cols=195 Identities=18% Similarity=0.293 Sum_probs=176.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-CCC-CCCCHH
Q ss_conf 998888745789999999896322689986638899999589778974303468979879982999997-421-241099
Q 027852 2 AGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAE-ASK-SILTLQ 79 (218)
Q Consensus 2 ~~~~~~~~l~~~~~~F~~~~~~~~~~~~~I~t~~FL~a~~~l~~~~d~LG~vFs~vk~Di~~kI~~l~~-~~~-~~~TL~ 79 (218)
+.-++.|+|++|..+|+++.. .++++|+|.+||+||++|++|||+||++|+||++||.+||++++. +|+ +|.||+
T Consensus 4 ~~~~~~f~l~~v~~~F~~~~~---~~~~~I~t~~FL~a~~~l~~~fd~LG~~F~~v~~Dv~gnI~kL~~~~p~~~~~TL~ 80 (224)
T 2i3f_A 4 KKNEEKEDFGIIVILWKQVTV---KEDGKVPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKLYRANQTVHAETLQ 80 (224)
T ss_dssp -------CTTHHHHHHHTSCC---CTTCCCBHHHHHHHHHHTHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTTCCSBHH
T ss_pred HHCCCCCCHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 001567789999999987124---68898669999999999999999821787999999999999998628651041299
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999873376456886205689997468999999999985289880079999998620226506789999997530899
Q 027852 80 SVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPT 159 (218)
Q Consensus 80 ~li~~E~~~g~~~~~~S~t~~LLwL~RaL~Fi~~fl~~l~~~~~~~l~~~~~~AY~~tL~~yHgw~vr~a~~~Al~a~P~ 159 (218)
+||.+|+ . +++||+++||||||||+|++.||+++.++++ +++.+|++||++||+|||||+||++|++||+++|+
T Consensus 81 ~mv~~E~-~----k~~S~tr~LLwL~RaL~Fi~~~l~~l~~~~~-~l~~~~~~AY~~tL~~yHgwivr~af~~Am~a~P~ 154 (224)
T 2i3f_A 81 ELIIAEN-S----PDGLATVALLWLKRAFQFIASFLRRLVVTDK-SLEQCVTEAYNCTLRPCHSAVIQKVFWGGVKLAPS 154 (224)
T ss_dssp HHHHHHC-S----TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHTTTGGGSCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHH-H----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999988-4----6885168899999999999999999864872-59999999999886258962999999999985998
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899999703899733558987553333001013578999999975555543
Q 027852 160 RAQLLRKLNEDGESYPMTYLFLLSNMILTFTFRFNFSFLLNNYILKKFHIFF 211 (218)
Q Consensus 160 R~~fl~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 211 (218)
|++|+++++++ ......+|.. ++..++..+..+..+|..++++..-
T Consensus 155 R~~fl~~L~~~----~~~~~~~l~~--~l~~l~~v~~~i~~ly~~~~L~d~~ 200 (224)
T 2i3f_A 155 RERFYRKLHPD----LNIAKAKIEE--FLIELHDPLCCIVQFFFQRELEDQC 200 (224)
T ss_dssp HHHHHHHHCSS----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHCCC----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999997778----9999999999--9999999999999999977999755
No 2
>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*
Probab=1.00 E-value=1 Score=324.53 Aligned_cols=186 Identities=22% Similarity=0.391 Sum_probs=169.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHH----CCCCCCCHHHHHHHHHHCCCCC-CCCCCH
Q ss_conf 2689986638899999589778974303-468979879982999997----4212410999999987337645-688620
Q 027852 25 NSQAADVELAAFSRACSYVSPLFGCLGI-AFKFAEMDYVAKVDDLAE----ASKSILTLQSVIDRDIEGNCVR-KAGSHT 98 (218)
Q Consensus 25 ~~~~~~I~t~~FL~a~~~l~~~~d~LG~-vFs~vk~Di~~kI~~l~~----~~~~~~TL~~li~~E~~~g~~~-~~~S~t 98 (218)
.+++++|+|.+||+||++|++|||+||+ +|+||++|+.+||+++++ +|++|.||++||++|++.|+.. .+.||+
T Consensus 12 ~~~~~~i~t~~fL~a~~~l~~~~d~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~~~~~~~~s~t 91 (209)
T 3rzn_A 12 LPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGAT 91 (209)
T ss_dssp CCTTCCCBHHHHHHHHTTSGGGGGGSSCGGGHHHHHHHHHHHHHHHHHHHHCTTTTSBHHHHHHHHHHHHGGGTTSSHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 79889957899999999999999872731344779889988999999985484243229999999997388655775188
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 56899974689999999999852898-----8007999999862022650678999999753089978999997038997
Q 027852 99 RNLLRVKRGLDMVRVLFEQILAAEGN-----SLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRKLNEDGES 173 (218)
Q Consensus 99 ~~LLwL~RaL~Fi~~fl~~l~~~~~~-----~l~~~~~~AY~~tL~~yHgw~vr~a~~~Al~a~P~R~~fl~~l~~~~~~ 173 (218)
++||||||||+|++.||+++.+++++ +++.+|++||++||+|||||+||++|++||+++|+|++|+++++++++.
T Consensus 92 r~LLwL~R~L~fi~~~l~~l~~~~~~~~~~~~l~~~~~~AY~~tL~~~H~w~vr~a~~~A~~a~P~R~~fl~~l~~g~~~ 171 (209)
T 3rzn_A 92 LALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNV 171 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTSTTCCHHHHHHHHHHHTGGGSCHHHHHHHHHHGGGCCCHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 89999998999999999987267433334057889999999988635897189999999998699899999998369997
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 335589875533330010135789999999755555431
Q 027852 174 YPMTYLFLLSNMILTFTFRFNFSFLLNNYILKKFHIFFR 212 (218)
Q Consensus 174 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 212 (218)
..+.+..+|.+ ++.+++..+..+..+|..++++..|+
T Consensus 172 ~ee~~~~~l~~--~l~~l~~iv~~i~~~~~~~~L~~~~k 208 (209)
T 3rzn_A 172 TEEECLEKIRL--FLVNYTATIDVIYEMYTQMNAELNYK 208 (209)
T ss_dssp CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 59999999999--99999999999999999869987677
No 3
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}
Probab=1.00 E-value=1 Score=324.11 Aligned_cols=191 Identities=19% Similarity=0.312 Sum_probs=163.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHH----CCCCCCCH
Q ss_conf 8888745789999999896322689986638899999589778974303-468979879982999997----42124109
Q 027852 4 TDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGI-AFKFAEMDYVAKVDDLAE----ASKSILTL 78 (218)
Q Consensus 4 ~~~~~~l~~~~~~F~~~~~~~~~~~~~I~t~~FL~a~~~l~~~~d~LG~-vFs~vk~Di~~kI~~l~~----~~~~~~TL 78 (218)
++|+..++.|...|.+|... .+++++|+|.+||+||++|++|||+||+ +|+||++|+.+||+++++ +|++|.||
T Consensus 11 p~~~tff~~~~~~F~~~~~~-~~~~~~I~t~~fL~a~~~l~~~fd~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL 89 (209)
T 3kv0_A 11 PAGATFLETFXXSFVDVPID-AEXGNAISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNI 89 (209)
T ss_dssp ----CGGGGCSSCGGGCCEE-GGGTSEEBHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSGGGCSBH
T ss_pred CCCCCCHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHH
T ss_conf 99995098887508747786-55689833999999999999999864820532689888882999998862383643429
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999987337645688620568999746899999999998528988007999999862022650678999999753089
Q 027852 79 QSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALP 158 (218)
Q Consensus 79 ~~li~~E~~~g~~~~~~S~t~~LLwL~RaL~Fi~~fl~~l~~~~~~~l~~~~~~AY~~tL~~yHgw~vr~a~~~Al~a~P 158 (218)
++||++|++. +++||+++||||||||+|++.||+++. .++.+++.+|++||++||+|||||+||++|++||+++|
T Consensus 90 ~~mv~~E~~~----~~~S~tr~LLwL~RaL~fi~~~l~~l~-~~~~~l~~~~~~AY~~tL~~yHgw~vr~af~~A~~a~P 164 (209)
T 3kv0_A 90 QDLVRNELXT----XSHTATEGLLWLVRGLEFTCIALSXNI-GSTEELADSFRGSYRVTLXPHHSFLVXPIFSAAMSACP 164 (209)
T ss_dssp HHHHHHHTCC-----CCHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHTTGGGSCTTTHHHHHHHHHTCC
T ss_pred HHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999872----566058899999999999999999880-89973789999999998744453279999999998599
Q ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 978999997038997335589875533330010135789999999755
Q 027852 159 TRAQLLRKLNEDGESYPMTYLFLLSNMILTFTFRFNFSFLLNNYILKK 206 (218)
Q Consensus 159 ~R~~fl~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~ 206 (218)
+|++|+++++++++++. ..|.. .+..++-.+..+..+|..++
T Consensus 165 ~R~~fl~~l~~~~~~~~----~~L~~--~l~al~~v~~~i~~~~~~~~ 206 (209)
T 3kv0_A 165 YRXDFYAXLGDDEQXVQ----EELRE--YLVALDXIVNILXRFLESXE 206 (209)
T ss_dssp CHHHHHHHHCSCHHHHH----HHHHH--HHHHHHHHHHHHHHHHHSGG
T ss_pred CHHHHHHHHCCCHHHHH----HHHHH--HHHHHHHHHHHHHHHHHHCC
T ss_conf 68999999679889999----99999--99999999999999998438
No 4
>4a57_A Nucleoside-triphosphatase 1; hydrolase; 2.00A {Toxoplasma gondii} PDB: 4a59_A* 4a5a_A* 4a5b_A 3agr_A
Probab=1.00 E-value=1 Score=15.17 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=13.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 998663889999958977897430346897987
Q 027852 28 AADVELAAFSRACSYVSPLFGCLGIAFKFAEMD 60 (218)
Q Consensus 28 ~~~I~t~~FL~a~~~l~~~~d~LG~vFs~vk~D 60 (218)
+++++++.=+||.. .=||.+|.||.|+.++
T Consensus 431 ~p~~plpan~ea~s---~gf~~~~qvf~~~s~~ 460 (611)
T 4a57_A 431 APKLPLPANIEAAS---SGFESVDQVFRFASST 460 (611)
T ss_dssp SCSSCCCCCCCTTC---CCCCCHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHC---CCCCCHHHHHHHHCCC
T ss_conf 89999986510110---4777777877432268
No 5
>3d1b_A RNA-induced transcriptional silencing complex protein TAS3; all alpha motif, RITS complex, immunoglobulin fold, cell cycle; 1.70A {Schizosaccharomyces pombe} PDB: 3d1d_A
Probab=1.00 E-value=1 Score=13.80 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHC-----------CCHHHHHHHH
Q ss_conf 8999746899999999998528988007999999862022650678--99999975308-----------9978999997
Q 027852 101 LLRVKRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAI--RKAVAAGMYAL-----------PTRAQLLRKL 167 (218)
Q Consensus 101 LLwL~RaL~Fi~~fl~~l~~~~~~~l~~~~~~AY~~tL~~yHgw~v--r~a~~~Al~a~-----------P~R~~fl~~l 167 (218)
+-||+ .|.|++ ...+|.+||.+++..||+-++ .+.-.+.+.+. |+.-.|+..+
T Consensus 19 i~wl~-~lsf~q-------------~~~sc~~~~~~~iphy~~~lid~sq~~qlvfsas~~fp~~~nqp~~~ql~fls~l 84 (124)
T 3d1b_A 19 INWLK-SLSFFQ-------------TNSSCAEALVKVIPHYHNKLIDFSQVLQLVFSASEKFPIQENQPLPEQLMFLSNL 84 (124)
T ss_dssp HHHHH-TSHHHH-------------TCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTCCCCCBCSSCCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHH-------------CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99998-647872-------------6878999999866488987713999999999987517754589673999999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 0389973355898755333300101357899
Q 027852 168 NEDGESYPMTYLFLLSNMILTFTFRFNFSFL 198 (218)
Q Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 198 (218)
.....-++ -.=.++-|.|--.||-.|.++-
T Consensus 85 ek~~pf~k-avgssiyklvt~kn~sl~~as~ 114 (124)
T 3d1b_A 85 EKQTPFAK-AVGSSIYKLVTGKNLSLDFASQ 114 (124)
T ss_dssp TTSCHHHH-HHHHHHHHHHHHHCBCHHHHHH
T ss_pred HHCCCHHH-HHHHHHHHHHHCCCCCHHHHHH
T ss_conf 76386688-9988999998257667789999
No 6
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=12.87 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 999999998528988007999999862
Q 027852 111 VRVLFEQILAAEGNSLKDPASKAYTQV 137 (218)
Q Consensus 111 i~~fl~~l~~~~~~~l~~~~~~AY~~t 137 (218)
+..||+.|+.+.+++.+.+..+||.++
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~eS 34 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWVES 34 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999998559999999999997652
No 7
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=1.00 E-value=1 Score=12.07 Aligned_cols=49 Identities=10% Similarity=0.149 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHC------------CCCCCCHHHHHHHHHHCCCC--CCCCCCHHHH
Q ss_conf 4689798799829999974------------21241099999998733764--5688620568
Q 027852 53 AFKFAEMDYVAKVDDLAEA------------SKSILTLQSVIDRDIEGNCV--RKAGSHTRNL 101 (218)
Q Consensus 53 vFs~vk~Di~~kI~~l~~~------------~~~~~TL~~li~~E~~~g~~--~~~~S~t~~L 101 (218)
.|+-|..|+..+|..|... ..--.-+-+|-.-|+..... .=+|||+|.+
T Consensus 19 ~y~qvsedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDIDIKiRsCKGSCar~~ 81 (119)
T 1lwu_A 19 RYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRACKGSCARYL 81 (119)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 799999999999999999999999999999998999999999984121211220543577889
No 8
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=1.00 E-value=1 Score=11.78 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998620
Q 027852 129 PASKAYTQVF 138 (218)
Q Consensus 129 ~~~~AY~~tL 138 (218)
.|.+||+...
T Consensus 8 ~~~~a~~~v~ 17 (141)
T 1t3y_A 8 ACRAAYNLVR 17 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 9
>1z21_A YOP proteins translocation protein H; plague, type III secretion, YOPR, cell invasion; 1.50A {Yersinia pestis} SCOP: a.243.1.2
Probab=1.00 E-value=1 Score=11.73 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 5897789743034689798799829999974212410999999987
Q 027852 41 SYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDI 86 (218)
Q Consensus 41 ~~l~~~~d~LG~vFs~vk~Di~~kI~~l~~~~~~~~TL~~li~~E~ 86 (218)
+.+++=|+.+|+--.-|--++-++|+. ...+..-.+|.+++..|.
T Consensus 60 Ra~~ReFdPlg~r~EtvLL~vL~~ik~-~~~~~g~eyL~~LaRrEL 104 (112)
T 1z21_A 60 RSVLQQFDSFGKRWEAILLQVLEGIKP-NESQVGLPYLSELINKEL 104 (112)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHTC---------CHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHH
T ss_conf 999998675115899999999987166-788875489999999999
No 10
>2kfp_A Pspto_3016 protein; alpha, beta, double-WING, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae} PDB: 3h9x_A
Probab=1.00 E-value=1 Score=11.59 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 898800799999986202265
Q 027852 122 EGNSLKDPASKAYTQVFAPHH 142 (218)
Q Consensus 122 ~~~~l~~~~~~AY~~tL~~yH 142 (218)
+++.+......||+-+..+||
T Consensus 101 ~d~~i~~lI~~Sy~Lv~~~~~ 121 (125)
T 2kfp_A 101 GAKEIHSLIEDSFQLTRLEHH 121 (125)
T ss_dssp CHHHHHHHHHHHHHHTCSCSC
T ss_pred CHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999998743013
Done!