Query 027853
Match_columns 218
No_of_seqs 161 out of 425
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 6.3E-50 2.1E-54 326.2 5.2 129 70-198 2-130 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 4.1E-42 1.4E-46 276.8 7.7 124 67-197 4-130 (131)
3 2yqr_A KIAA0907 protein; struc 100.0 1.8E-30 6.3E-35 206.2 8.5 102 67-181 9-111 (119)
4 2opv_A KHSRP protein; KH domai 98.9 2.4E-09 8.3E-14 78.7 6.9 71 70-168 14-84 (85)
5 1dtj_A RNA-binding neurooncolo 98.8 6.1E-09 2.1E-13 74.5 6.7 73 69-168 2-74 (76)
6 1x4m_A FAR upstream element bi 98.7 1.5E-08 5E-13 76.0 5.9 74 68-169 13-86 (94)
7 1x4n_A FAR upstream element bi 98.7 1.6E-08 5.6E-13 75.5 4.7 70 69-168 14-83 (92)
8 2hh2_A KH-type splicing regula 98.6 3.1E-08 1.1E-12 76.0 5.7 72 71-169 8-79 (107)
9 1zzk_A Heterogeneous nuclear r 98.6 5E-08 1.7E-12 71.2 5.7 69 70-168 7-75 (82)
10 1ec6_A RNA-binding protein NOV 98.6 2.7E-08 9.2E-13 73.3 3.4 73 69-168 2-74 (87)
11 2p2r_A Poly(RC)-binding protei 98.6 2.9E-08 1E-12 71.2 3.4 70 69-168 4-73 (76)
12 1we8_A Tudor and KH domain con 98.5 8.1E-08 2.8E-12 73.2 5.5 72 69-168 14-85 (104)
13 1wvn_A Poly(RC)-binding protei 98.5 5E-08 1.7E-12 71.1 3.9 69 70-168 6-74 (82)
14 2dgr_A Ring finger and KH doma 98.5 1.1E-07 3.9E-12 70.3 5.3 66 70-168 10-75 (83)
15 2cte_A Vigilin; K homology typ 98.5 9.5E-08 3.3E-12 71.6 4.8 67 70-168 17-83 (94)
16 2hh3_A KH-type splicing regula 98.5 8.1E-08 2.8E-12 74.0 4.4 68 71-168 12-79 (106)
17 1vig_A Vigilin; RNA-binding pr 98.5 2.3E-07 7.8E-12 66.2 6.0 66 71-168 6-71 (71)
18 1j5k_A Heterogeneous nuclear r 98.5 7.3E-08 2.5E-12 71.4 3.4 70 69-168 13-82 (89)
19 2axy_A Poly(RC)-binding protei 98.4 1.3E-07 4.6E-12 67.7 3.6 67 70-168 5-71 (73)
20 2ctk_A Vigilin; K homology typ 98.4 2.5E-07 8.6E-12 70.8 4.5 67 70-168 17-83 (104)
21 2ctl_A Vigilin; K homology typ 98.3 8E-07 2.7E-11 67.2 6.0 70 70-168 17-86 (97)
22 2ctm_A Vigilin; K homology typ 98.3 6.6E-07 2.3E-11 67.5 4.9 67 71-168 18-84 (95)
23 3krm_A Insulin-like growth fac 98.2 8.6E-07 2.9E-11 71.0 4.8 73 69-169 84-156 (163)
24 1j4w_A FUSE binding protein; s 98.1 2.7E-06 9.2E-11 69.0 5.8 71 70-167 104-174 (174)
25 2jvz_A KH type-splicing, FAR u 98.1 7.4E-06 2.5E-10 65.2 7.1 72 71-170 3-74 (164)
26 2jvz_A KH type-splicing, FAR u 98.0 3.6E-06 1.2E-10 67.0 3.8 60 85-168 100-159 (164)
27 2jzx_A Poly(RC)-binding protei 97.9 3.5E-06 1.2E-10 67.2 2.9 70 70-168 89-158 (160)
28 2ctj_A Vigilin; K homology typ 97.9 7.6E-06 2.6E-10 61.8 4.1 66 71-168 18-84 (95)
29 1tua_A Hypothetical protein AP 97.9 1.8E-05 6.1E-10 67.0 6.1 54 85-169 107-160 (191)
30 1j4w_A FUSE binding protein; s 97.8 9.4E-06 3.2E-10 65.8 3.8 68 71-168 4-71 (174)
31 2jzx_A Poly(RC)-binding protei 97.8 1.1E-05 3.9E-10 64.2 3.9 68 68-167 3-70 (160)
32 2anr_A Neuro-oncological ventr 97.8 7.5E-06 2.6E-10 66.5 2.4 72 70-169 104-175 (178)
33 2anr_A Neuro-oncological ventr 97.8 1.9E-05 6.3E-10 64.1 4.6 74 70-170 6-79 (178)
34 2e3u_A PH-DIM2P, hypothetical 97.7 3.5E-05 1.2E-09 66.3 5.7 53 86-169 139-191 (219)
35 3krm_A Insulin-like growth fac 97.7 3.4E-05 1.2E-09 61.6 4.9 68 71-167 4-71 (163)
36 2cpq_A FragIle X mental retard 97.7 1.8E-05 6.3E-10 59.8 2.5 64 71-168 16-80 (91)
37 3u1k_A Polyribonucleotide nucl 97.3 0.00015 5.3E-09 70.8 4.1 64 70-168 567-630 (630)
38 2qnd_A FMR1 protein; KH domain 96.5 0.0016 5.4E-08 52.0 3.5 71 72-168 69-141 (144)
39 2e3u_A PH-DIM2P, hypothetical 96.2 0.0023 7.8E-08 54.9 3.2 68 71-168 35-102 (219)
40 2ctf_A Vigilin; K homology typ 95.8 0.012 4E-07 44.6 4.9 64 70-168 27-91 (102)
41 4aid_A Polyribonucleotide nucl 95.7 0.0018 6.2E-08 64.3 0.2 65 71-170 571-635 (726)
42 3n89_A Defective in GERM LINE 95.6 0.02 6.9E-07 52.9 6.5 73 69-166 29-103 (376)
43 2qnd_A FMR1 protein; KH domain 94.3 0.026 9E-07 44.8 3.1 30 71-106 5-34 (144)
44 3v69_A Protein filia; RNA-bind 92.2 0.033 1.1E-06 45.1 0.6 29 84-112 64-92 (140)
45 3cdi_A Polynucleotide phosphor 91.6 0.033 1.1E-06 55.2 0.0 41 71-117 561-601 (723)
46 3n89_A Defective in GERM LINE 88.1 0.38 1.3E-05 44.3 4.0 63 86-168 196-260 (376)
47 4fxw_B Splicing factor 1; UHM, 87.4 0.018 6.2E-07 45.7 -4.5 47 14-62 69-119 (124)
48 1e3p_A Guanosine pentaphosphat 86.0 0.042 1.4E-06 54.8 -3.8 36 73-114 601-636 (757)
49 1tua_A Hypothetical protein AP 85.1 0.18 6.2E-06 42.3 0.1 37 71-113 5-41 (191)
50 2z0s_A Probable exosome comple 71.1 14 0.00049 31.1 7.7 68 85-179 157-224 (235)
51 2cxc_A NUSA; transcription ter 66.0 1.6 5.6E-05 35.0 0.7 28 86-113 46-73 (144)
52 3iev_A GTP-binding protein ERA 42.2 9.4 0.00032 32.7 1.6 41 67-112 237-285 (308)
53 2ba0_A Archeal exosome RNA bin 39.6 48 0.0017 27.8 5.6 72 85-185 145-216 (229)
54 2asb_A Transcription elongatio 38.5 8.1 0.00028 33.7 0.6 34 80-113 121-155 (251)
55 2ijl_A AGR_C_4647P, molybdenum 38.3 56 0.0019 25.3 5.4 18 97-114 58-75 (135)
56 2pt7_G HP1451, hypothetical pr 36.4 6.3 0.00022 31.8 -0.4 20 87-106 44-63 (152)
57 1xao_A YDJ1, mitochondrial pro 35.1 57 0.002 24.5 4.9 49 104-168 47-97 (121)
58 1wjw_A Phosphoacetylglucosamin 34.6 1.3E+02 0.0045 22.2 6.8 52 96-167 45-97 (112)
59 1k0r_A NUSA; two component arr 34.6 11 0.00037 34.6 0.8 34 80-113 244-278 (366)
60 3k5i_A Phosphoribosyl-aminoimi 32.7 71 0.0024 28.2 5.8 50 99-164 350-399 (403)
61 2je6_I RRP4, exosome complex R 32.6 4.1 0.00014 35.1 -2.2 56 85-166 164-219 (251)
62 3isp_A HTH-type transcriptiona 26.4 29 0.001 28.0 2.0 19 97-115 40-58 (303)
63 2nn6_G Exosome complex exonucl 26.3 31 0.0011 30.3 2.3 54 85-164 219-272 (289)
64 2cxc_A NUSA; transcription ter 25.2 11 0.00039 30.0 -0.7 37 70-112 103-139 (144)
65 2ja9_A Exosome complex exonucl 23.0 62 0.0021 26.2 3.3 65 85-178 100-166 (175)
66 1hh2_P NUSA, N utilization sub 21.8 32 0.0011 31.1 1.4 34 80-113 240-274 (344)
67 3u42_A 50S ribosomal protein L 21.5 64 0.0022 27.3 3.2 62 86-167 127-201 (229)
68 2kie_A Inositol polyphosphate 21.3 25 0.00085 27.5 0.5 15 100-114 80-94 (124)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=6.3e-50 Score=326.23 Aligned_cols=129 Identities=45% Similarity=0.851 Sum_probs=124.8
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
.++|||||+++||+|||||+||||||+|+|+||++|||||.|||+||+|+.++|+.++|+|+|+|++|||||+|+|++++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 57899999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcCccCCCCCC
Q 027853 150 NIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPG 198 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~pv~e~~d~~K~~QL~ELA~lNGt~r~~~~~ 198 (218)
++|+++|++|+++|++||.|+++++|++|++||+|||+||||||++...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~ 130 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGS
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCccc
Confidence 9999999999999999999999999999999999999999999998653
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=4.1e-42 Score=276.79 Aligned_cols=124 Identities=39% Similarity=0.648 Sum_probs=108.2
Q ss_pred ceeeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 027853 67 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 146 (218)
Q Consensus 67 ~vk~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~ 146 (218)
..|.++||+||+++||+|||||+||||+|+|+|+||++|||||.|||+||+++.+++. .+...++|++|||||+|+|+
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~--~~~~~~~~~~e~lhV~I~a~ 81 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGR--KDGQMLPGEDEPLHALVTAN 81 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSS--CCCCCSCCSSCCEEEEEEES
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccc--cccccccccCCCeEEEEEEC
Confidence 4678999999999999999999999999999999999999999999999999976541 12234778999999999998
Q ss_pred CchhhHHHHHHHHHHHHHHhcCC---CCchhHHHHHHHHHHHHHhcCccCCCCC
Q 027853 147 LPANIVDIRLRQAQEIIEELLKP---VDESQDYIKRQQLRELAMLNSNFREDSP 197 (218)
Q Consensus 147 ~~~~~~~~rl~~A~e~Ie~LL~p---v~e~~d~~K~~QL~ELA~lNGt~r~~~~ 197 (218)
+++ ++++|+++|++||.. +++++|++|++||+|||+||||||++++
T Consensus 82 ~~e-----~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 82 TME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp SHH-----HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred CHH-----HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 865 689999999999975 7899999999999999999999999864
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=1.8e-30 Score=206.16 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=91.5
Q ss_pred ceeeEEEEecCCC-CCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 027853 67 TVKRILRLEIPVD-TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEA 145 (218)
Q Consensus 67 ~vk~~~ki~IPv~-~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a 145 (218)
++..++|||||++ .||+|||+|+||||+|+|+|+||++|||||.|||+||++.+.. .-++++|||||+|++
T Consensus 9 ~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~--------~~~e~~e~l~V~I~a 80 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPA--------SGREAFEPMYIYISH 80 (119)
T ss_dssp CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTT--------TSSCCSSBCEEEEEE
T ss_pred eeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccc--------cccccCCCcEEEEEe
Confidence 4678999999999 6999999999999999999999999999999999999985432 124689999999999
Q ss_pred cCchhhHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 027853 146 DLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 181 (218)
Q Consensus 146 ~~~~~~~~~rl~~A~e~Ie~LL~pv~e~~d~~K~~Q 181 (218)
.+++ .+++|+++|++||.++.+.++.||++|
T Consensus 81 ~~~e-----~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 81 PKPE-----GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp SSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHH-----HHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 9875 689999999999999999999999776
No 4
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.91 E-value=2.4e-09 Score=78.72 Aligned_cols=71 Identities=23% Similarity=0.429 Sum_probs=56.1
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
...++.||. +++|+|||++|.|+|.|+++|||+|.|...|+.. ...+-.|.|++ +++
T Consensus 14 ~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~----------------~~~er~v~I~G-~~~ 70 (85)
T 2opv_A 14 TVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DPY 70 (85)
T ss_dssp EEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS----------------TTSCEEEEEEE-CHH
T ss_pred EEEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC----------------CCCceEEEEEe-CHH
Confidence 456788885 4789999999999999999999999998654311 12345789998 654
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|++++.
T Consensus 71 -----~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 71 -----KVQQACEMVMDILR 84 (85)
T ss_dssp -----HHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHhc
Confidence 57899999999875
No 5
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.84 E-value=6.1e-09 Score=74.49 Aligned_cols=73 Identities=30% Similarity=0.518 Sum_probs=55.7
Q ss_pred eeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 027853 69 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~ 148 (218)
+.+.++.||. +++|+|||++|.|+|+|+++|||+|.|...+... + ....-.|.|++. +
T Consensus 2 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-----------~----~~~~~~v~I~G~-~ 59 (76)
T 1dtj_A 2 KELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-----------P----GTRNRRVTITGS-P 59 (76)
T ss_dssp CEEEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-----------T----TCCEEEEEEEES-H
T ss_pred ceEEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCCCCC-----------C----CCceeEEEEEeC-H
Confidence 4567788885 5789999999999999999999999998542111 1 122347888885 4
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 027853 149 ANIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~ 168 (218)
+ .+++|+++|+.++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 60 A-----ATQAAQYLISQRVT 74 (76)
T ss_dssp H-----HHHHHHHHHHHHCC
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 57899999999886
No 6
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.73 E-value=1.5e-08 Score=75.99 Aligned_cols=74 Identities=20% Similarity=0.413 Sum_probs=57.5
Q ss_pred eeeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecC
Q 027853 68 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 147 (218)
Q Consensus 68 vk~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~ 147 (218)
-..+.+|.||. +++|+|||++|.|+|+|+++|||+|.|-..+... ....-.|.|++ +
T Consensus 13 ~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~r~v~I~G-~ 69 (94)
T 1x4m_A 13 GNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN----------------TGADKPLRITG-D 69 (94)
T ss_dssp CCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS----------------SCSCEEEEEEE-C
T ss_pred CcEEEEEEECh------hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC----------------CCCceEEEEEe-C
Confidence 34567788885 4889999999999999999999999997543211 12345788998 5
Q ss_pred chhhHHHHHHHHHHHHHHhcCC
Q 027853 148 PANIVDIRLRQAQEIIEELLKP 169 (218)
Q Consensus 148 ~~~~~~~rl~~A~e~Ie~LL~p 169 (218)
++ .+++|+++|++++..
T Consensus 70 ~~-----~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 70 PY-----KVQQAKEMVLELIRD 86 (94)
T ss_dssp TT-----THHHHHHHHHHHHCC
T ss_pred HH-----HHHHHHHHHHHHHhc
Confidence 54 478999999999874
No 7
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.67 E-value=1.6e-08 Score=75.47 Aligned_cols=70 Identities=16% Similarity=0.445 Sum_probs=54.3
Q ss_pred eeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 027853 69 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~ 148 (218)
..+.++.||. +++|+|||++|.|+|+|+++|||+|.|..... ....-.|.|++. +
T Consensus 14 ~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~------------------g~~~r~v~I~G~-~ 68 (92)
T 1x4n_A 14 VMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPDSG------------------GLPERSCMLTGT-P 68 (92)
T ss_dssp CEEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT------------------TCSEEEEEEEEC-H
T ss_pred CEEEEEEECh------HHcceeECCCchHHHHHHHHhCCEEEEcCCCC------------------CCCccEEEEEeC-H
Confidence 3466788875 58999999999999999999999999985320 012236888885 4
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 027853 149 ANIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~ 168 (218)
+ .+++|+++|++++.
T Consensus 69 e-----~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 69 E-----SVQSAKRLLDQIVE 83 (92)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 57899999999876
No 8
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.65 E-value=3.1e-08 Score=76.00 Aligned_cols=72 Identities=24% Similarity=0.392 Sum_probs=54.1
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~ 150 (218)
+.+|.||. +++|+|||++|+|+|+|+++|||+|.|..... +. .....=.|.|++ +++
T Consensus 8 ~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-------------~~--~~~~~r~V~I~G-~~e- 64 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQLP-------------PN--GDPNFKLFIIRG-SPQ- 64 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-------------TT--CCTTEEEEEEES-CHH-
T ss_pred eEEEEECH------HHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-------------CC--CCCCceEEEEEC-CHH-
Confidence 56777874 47899999999999999999999999975321 00 011234678887 444
Q ss_pred hHHHHHHHHHHHHHHhcCC
Q 027853 151 IVDIRLRQAQEIIEELLKP 169 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~p 169 (218)
.+++|+++|++++.-
T Consensus 65 ----~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 65 ----QIDHAKQLIEEKIEG 79 (107)
T ss_dssp ----HHHHHHHHHHHHSCS
T ss_pred ----HHHHHHHHHHHHHhc
Confidence 578999999999873
No 9
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.61 E-value=5e-08 Score=71.16 Aligned_cols=69 Identities=20% Similarity=0.426 Sum_probs=53.1
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
.+.++.||. +++|+|||++|.++|+|+++|||+|.|... .++ ...-.|.|++. ++
T Consensus 7 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------------~~~----~~~~~v~I~G~-~~ 61 (82)
T 1zzk_A 7 ITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEP--------------LEG----SEDRIITITGT-QD 61 (82)
T ss_dssp EEEEEEEET------TTGGGGTCGGGHHHHHHHHHHCCEEEECCT--------------TSC----SSEEEEEEEEC-HH
T ss_pred EEEEEEECh------HhcCeeECCCchHHHHHHHHHCCEEEEcCC--------------CCC----CCceEEEEEeC-HH
Confidence 466788885 477999999999999999999999999631 011 12246888884 43
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|++++.
T Consensus 62 -----~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 62 -----QIQNAQYLLQNSVK 75 (82)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 57899999999875
No 10
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=2.7e-08 Score=73.27 Aligned_cols=73 Identities=32% Similarity=0.568 Sum_probs=54.6
Q ss_pred eeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 027853 69 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~ 148 (218)
|.+.++.||. +++|+|||++|.|+|.|+++|||+|.|-..+... |+ ...=.|.|++. +
T Consensus 2 k~t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-----------~g----~~~r~v~I~G~-~ 59 (87)
T 1ec6_A 2 KELVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS-P 59 (87)
T ss_dssp CSEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-----------TT----SCEEEEEEESS-H
T ss_pred ceEEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-----------CC----CCceEEEEEcC-H
Confidence 3456777874 5789999999999999999999999997532111 11 12346788875 4
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 027853 149 ANIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~ 168 (218)
+ .++.|+++|+.++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 60 A-----ATQAAQYLISQRVT 74 (87)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 57899999999986
No 11
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.57 E-value=2.9e-08 Score=71.23 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=54.6
Q ss_pred eeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 027853 69 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~ 148 (218)
..+.++.||. +++|.|||++|.++|+|+++|||+|.|-.. . + ....=.|.|++. +
T Consensus 4 ~~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~----------~----~~~~~~v~I~G~-~ 58 (76)
T 2p2r_A 4 TTSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIANP----V----------E----GSTDRQVTITGS-A 58 (76)
T ss_dssp CEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCC----C----------T----TCSEEEEEEEEC-H
T ss_pred ceEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcCC----C----------C----CCCeEEEEEEeC-H
Confidence 3466778874 588999999999999999999999999741 0 1 122347888885 4
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 027853 149 ANIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~ 168 (218)
+ .+++|+++|+++|.
T Consensus 59 ~-----~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 59 A-----SISLAQYLINVRLS 73 (76)
T ss_dssp H-----HHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 4 57899999999886
No 12
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.55 E-value=8.1e-08 Score=73.17 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=55.3
Q ss_pred eeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 027853 69 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~ 148 (218)
..+.+|.||. +++|+|||++|.|+|+|+++|||+|.|-...... ..+.=.|.|++...
T Consensus 14 p~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~~~V~I~G~~~ 71 (104)
T 1we8_A 14 PVFEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEGT----------------LLLSRLIKISGTQK 71 (104)
T ss_dssp EEEEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS----------------SSSEEEEEEEEEHH
T ss_pred CEEEEEEECh------hheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC----------------CCCcceEEEEcCHH
Confidence 3567788884 4789999999999999999999999997532100 12334788888532
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 027853 149 ANIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.++.
T Consensus 72 ------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 72 ------EVAAAKHLILEKVS 85 (104)
T ss_dssp ------HHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHh
Confidence 47899999999986
No 13
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.54 E-value=5e-08 Score=71.08 Aligned_cols=69 Identities=22% Similarity=0.371 Sum_probs=53.8
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
.+.++.||. +++|.|||++|.++|+|+++|||+|.|-... + ....=.|.|++.. +
T Consensus 6 ~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~--------------~----~~~~r~v~I~G~~-~ 60 (82)
T 1wvn_A 6 TTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANPV--------------E----GSSGRQVTITGSA-A 60 (82)
T ss_dssp EEEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEECCCC--------------T----TCSEEEEEEEECH-H
T ss_pred EEEEEEEch------HhccceeCCCchhHHHHHHHhCCEEEEecCC--------------C----CCCceEEEEEcCH-H
Confidence 456777874 5889999999999999999999999997420 1 1223478888853 3
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|++++.
T Consensus 61 -----~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 61 -----SISLAQYLINARLS 74 (82)
T ss_dssp -----HHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHH
Confidence 57899999999987
No 14
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=1.1e-07 Score=70.27 Aligned_cols=66 Identities=23% Similarity=0.503 Sum_probs=50.3
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
....+.||. +++|.|||++|.|+|+||++|||+|.|-.++ +++ .|.|++.. +
T Consensus 10 ~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------------------~~~-~v~ItG~~-e 61 (83)
T 2dgr_A 10 TTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------------------KEP-VFAVTGMP-E 61 (83)
T ss_dssp EEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------------------SCC-EEEEEECT-T
T ss_pred eEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC--------------------CCC-eEEEEcCH-H
Confidence 456677763 7899999999999999999999999995321 122 47777753 4
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|++++.
T Consensus 62 -----~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 62 -----NVDRAREEIEAHIT 75 (83)
T ss_dssp -----THHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 37889999998754
No 15
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.51 E-value=9.5e-08 Score=71.63 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=52.0
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
....+.||.+ ++|.||||+|.|+|+|+++|||+|.|-..+ ++.=.|.|++. ++
T Consensus 17 ~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~--------------------~~~~~V~I~G~-~e 69 (94)
T 2cte_A 17 ASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPD--------------------DPSNQIKITGT-KE 69 (94)
T ss_dssp EEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTT--------------------SSCCEEEEEEC-HH
T ss_pred eEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCC--------------------CCCCeEEEEEC-HH
Confidence 4567788854 669999999999999999999999995321 01127889886 44
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.++.
T Consensus 70 -----~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 70 -----GIEKARHEVLLISA 83 (94)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhh
Confidence 57889999998875
No 16
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.50 E-value=8.1e-08 Score=73.99 Aligned_cols=68 Identities=24% Similarity=0.439 Sum_probs=52.3
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~ 150 (218)
+.+|.||. +++|+|||+.|+|+|+|+++|||+|.|.-... ...+-.|.|++. ++
T Consensus 12 ~~~i~Ip~------~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~------------------~~~er~V~I~G~-~e- 65 (106)
T 2hh3_A 12 GIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD- 65 (106)
T ss_dssp CEEEEEET------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS------------------SSSEEEEEEESS-HH-
T ss_pred EEEEEECH------HHcCccCCCCcHHHHHHHHHHCcEEEEecCCC------------------CCceeEEEEEeC-HH-
Confidence 56777874 46799999999999999999999999974210 122346888875 33
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 027853 151 IVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|++++.
T Consensus 66 ----~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 66 ----RCEHAARIINDLLQ 79 (106)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHh
Confidence 57899999999876
No 17
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.48 E-value=2.3e-07 Score=66.20 Aligned_cols=66 Identities=26% Similarity=0.386 Sum_probs=50.4
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~ 150 (218)
...+.||. .++|+||||+|.++++|+++|||+|.|--.|+ .+=-|.|++. ++
T Consensus 6 ~~~i~I~~------~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~--------------------~~~~V~I~G~-~~- 57 (71)
T 1vig_A 6 YVEINIDH------KFHRHLIGKSGANINRIKDQYKVSVRIPPDSE--------------------KSNLIRIEGD-PQ- 57 (71)
T ss_dssp EEEEEECS------SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS--------------------SSEEEEEEES-SH-
T ss_pred EEEEEECH------HHhhhhcCCCCccHHHHHHHHCCEEEECCCCC--------------------cccEEEEEcC-HH-
Confidence 45566663 57799999999999999999999999964332 1116888886 33
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 027853 151 IVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.|+.
T Consensus 58 ----~v~~A~~~I~~i~~ 71 (71)
T 1vig_A 58 ----GVQQAKRELLELAS 71 (71)
T ss_dssp ----HHHHHHHHHHHTCC
T ss_pred ----HHHHHHHHHHHHhC
Confidence 47899999998863
No 18
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.48 E-value=7.3e-08 Score=71.40 Aligned_cols=70 Identities=20% Similarity=0.402 Sum_probs=53.3
Q ss_pred eeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 027853 69 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~ 148 (218)
+.+.++.||. +++|+|||++|.|+|+|+++|||+|.|... . ++ ...=.|.|++. +
T Consensus 13 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~----~----------~~----~~~~~v~I~G~-~ 67 (89)
T 1j5k_A 13 IITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEP----L----------EG----SEDRIITITGT-Q 67 (89)
T ss_dssp EEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHTCCEEEECSC----C----------SS----SSEEEEEEEEE-H
T ss_pred eEEEEEEECh------hhcceeECCCCHhHHHHHHHhCCeEEecCC----C----------CC----CCccEEEEEcC-H
Confidence 4566778874 588999999999999999999999999631 0 10 12236788885 4
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 027853 149 ANIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~ 168 (218)
+ .+++|+++|++++.
T Consensus 68 e-----~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 68 D-----QIQNAQYLLQNSVK 82 (89)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 57899999999876
No 19
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.42 E-value=1.3e-07 Score=67.65 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=52.4
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
...++.||. +.+|.|||++|.++|+|+++|||+|.|-..|+ ..=-|.|++. ++
T Consensus 5 ~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~--------------------~er~v~I~G~-~~ 57 (73)
T 2axy_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP-TN 57 (73)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC--------------------SEEEEEEEEC-HH
T ss_pred EEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC--------------------CcEEEEEEeC-HH
Confidence 466777873 57899999999999999999999999975321 1125788886 44
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+.+|+++|.++|.
T Consensus 58 -----~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 58 -----AIFKAFAMIIDKLE 71 (73)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 57899999998875
No 20
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.38 E-value=2.5e-07 Score=70.85 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=53.2
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
....+.||. .++|+||||+|.|+|+|+++|||+|.|--.|+ ++=.|.|++.. +
T Consensus 17 ~~~~i~Ip~------~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--------------------~~~~V~I~G~~-e 69 (104)
T 2ctk_A 17 VTIEVEVPF------DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--------------------QSDIIAITGLA-A 69 (104)
T ss_dssp EEEEEECCH------HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--------------------TCCEEEEEECH-H
T ss_pred EEEEEEECh------HHccceeCCCchHHHHHHHHHCCEEEecCCCC--------------------CcceEEEEcCH-H
Confidence 677778873 56799999999999999999999999964332 11178898863 3
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.++.
T Consensus 70 -----~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 70 -----NLDRAKAGLLERVK 83 (104)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 57899999999876
No 21
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.32 E-value=8e-07 Score=67.17 Aligned_cols=70 Identities=11% Similarity=0.211 Sum_probs=51.8
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
....+.||. .++|+|||++|.++|+|+++|||+|.|--.|... ...-.|.|++. .+
T Consensus 17 ~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~-----------------~~~~~V~I~G~-~e 72 (97)
T 2ctl_A 17 FKLSVTVDP------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN-----------------QPQDQITITGY-EK 72 (97)
T ss_dssp CEEEEECCT------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS-----------------SCSSEEEEESC-HH
T ss_pred eeEEEEECH------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC-----------------CCccEEEEEeC-HH
Confidence 356677774 4679999999999999999999999997543200 12236888875 33
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.++.
T Consensus 73 -----~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 73 -----NTEAARDAILRIVG 86 (97)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 46789999988764
No 22
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.29 E-value=6.6e-07 Score=67.46 Aligned_cols=67 Identities=16% Similarity=0.313 Sum_probs=50.5
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~ 150 (218)
+..+.||.+ ++|+||||+|.|+|+|+++|||+|.|-..|+. .+=.|.|++. ++
T Consensus 18 t~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~-------------------~~~~V~I~G~-~e- 70 (95)
T 2ctm_A 18 SEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-------------------DPNCVTVTGL-PE- 70 (95)
T ss_dssp CEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTCS-------------------CTTEEEEESC-HH-
T ss_pred EEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCCC-------------------CCcEEEEEcC-HH-
Confidence 456778754 56999999999999999999999999654321 1226888885 33
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 027853 151 IVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.|+.
T Consensus 71 ----~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 71 ----NVEEAIDHILNLEE 84 (95)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 46788888888754
No 23
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.24 E-value=8.6e-07 Score=71.00 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=56.2
Q ss_pred eeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 027853 69 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~ 148 (218)
....++.||. +++|+|||++|.++|+|+++|||+|.|-..+. | ..++.-.|.|++ ++
T Consensus 84 ~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~-------------~---~~~~~~~v~I~G-~~ 140 (163)
T 3krm_A 84 KLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT-------------P---DENDQVIVKIIG-HF 140 (163)
T ss_dssp CEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC-------------C---CTTSEEEEEEEE-CH
T ss_pred ceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCC-------------C---CCCCceEEEEEe-CH
Confidence 4456788873 67899999999999999999999999975432 1 123344688988 44
Q ss_pred hhhHHHHHHHHHHHHHHhcCC
Q 027853 149 ANIVDIRLRQAQEIIEELLKP 169 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~p 169 (218)
+ .+++|.++|+++|.-
T Consensus 141 ~-----~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 141 Y-----ASQMAQRKIRDILAQ 156 (163)
T ss_dssp H-----HHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHH
Confidence 4 578999999999873
No 24
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.14 E-value=2.7e-06 Score=69.02 Aligned_cols=71 Identities=20% Similarity=0.415 Sum_probs=52.1
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
...++.||. +++|+|||++|.|+|+|+++|||+|.|-.... + .. ....=.|.|++ +++
T Consensus 104 ~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~-------------~-~~-~~~~~~v~I~G-~~~ 161 (174)
T 1j4w_A 104 QEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPP-------------P-NA-DPNMKLFTIRG-TPQ 161 (174)
T ss_dssp CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCT-------------T-TS-CTTEEEEEEEC-CHH
T ss_pred EEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCC-------------C-CC-CCCceEEEEEC-CHH
Confidence 356778873 57899999999999999999999999985321 0 00 11122577877 443
Q ss_pred hhHHHHHHHHHHHHHHhc
Q 027853 150 NIVDIRLRQAQEIIEELL 167 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL 167 (218)
.+++|+++|+++|
T Consensus 162 -----~v~~A~~~I~~~i 174 (174)
T 1j4w_A 162 -----QIDYARQLIEEKI 174 (174)
T ss_dssp -----HHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHhC
Confidence 5789999999875
No 25
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.08 E-value=7.4e-06 Score=65.21 Aligned_cols=72 Identities=22% Similarity=0.404 Sum_probs=53.2
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~ 150 (218)
+.++.||.+ ++|+|||++|.|+|+|+++|||+|.|--.+.. + ...+-.|.|++ +++
T Consensus 3 ~~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~------------~----~~~~r~v~I~G-~~~- 58 (164)
T 2jvz_A 3 VQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ------------N----TNVDKPLRIIG-DPY- 58 (164)
T ss_dssp EEEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS------------S----SSSCEEEEEEE-CHH-
T ss_pred EEEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCC------------C----CCCceEEEEEc-CHH-
Confidence 567888754 68999999999999999999999999532210 0 12233677887 333
Q ss_pred hHHHHHHHHHHHHHHhcCCC
Q 027853 151 IVDIRLRQAQEIIEELLKPV 170 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~pv 170 (218)
.+++|+++|.+++...
T Consensus 59 ----~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 59 ----KVQQACEMVMDILRER 74 (164)
T ss_dssp ----HHHHHHHHHHHHTTCS
T ss_pred ----HHHHHHHHHHHHHHhc
Confidence 5789999999998843
No 26
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.00 E-value=3.6e-06 Score=67.02 Aligned_cols=60 Identities=25% Similarity=0.453 Sum_probs=47.0
Q ss_pred CeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 027853 85 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 164 (218)
Q Consensus 85 NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 164 (218)
+++|+|||++|.++|+|+++|||+|.|-.... ...+=.|.|++. ++ .+++|+++|+
T Consensus 100 ~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~------------------~~~~~~v~I~G~-~~-----~v~~A~~~I~ 155 (164)
T 2jvz_A 100 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD-----RCEHAARIIN 155 (164)
T ss_dssp TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT------------------TSSEEEEEEESC-HH-----HHHHHHHHHH
T ss_pred hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC------------------CCCcEEEEEEcC-HH-----HHHHHHHHHH
Confidence 58999999999999999999999999974311 011236778775 43 5789999999
Q ss_pred HhcC
Q 027853 165 ELLK 168 (218)
Q Consensus 165 ~LL~ 168 (218)
++|.
T Consensus 156 ~~i~ 159 (164)
T 2jvz_A 156 DLLQ 159 (164)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 27
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.95 E-value=3.5e-06 Score=67.20 Aligned_cols=70 Identities=26% Similarity=0.444 Sum_probs=52.7
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
...++.||. +++|+|||++|.++|+|+++|||+|.|.+.. .|+ ..+=.|.|++ +++
T Consensus 89 ~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~-------------~~~----~~~~~v~I~G-~~~ 144 (160)
T 2jzx_A 89 VTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-------------LPN----STERAITIAG-IPQ 144 (160)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC-------------STT----CCEEEEEEEE-CHH
T ss_pred EEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC-------------CCC----CCceEEEEEc-CHH
Confidence 467778873 6899999999999999999999999997521 011 1233678888 444
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|.+++.
T Consensus 145 -----~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 145 -----SIIECVKQICVVML 158 (160)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 57889999888764
No 28
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.92 E-value=7.6e-06 Score=61.78 Aligned_cols=66 Identities=17% Similarity=0.334 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHh-CCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eT-gckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
+..+.||. .+++.||||+|.++++|+++| ||+|.|--.|+. .-.|.|.+.+.
T Consensus 18 t~~i~Ip~------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~--------------------~~~V~I~G~~~- 70 (95)
T 2ctj_A 18 EVEVSIPA------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG--------------------SDTVVIRGPSS- 70 (95)
T ss_dssp CEEEECCH------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT--------------------CCEEEEESCHH-
T ss_pred EEEEEECH------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC--------------------cceEEEEcCHH-
Confidence 34455764 466899999999999999999 999988643321 11588887532
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.|+.
T Consensus 71 -----~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 71 -----DVEKAKKQLLHLAE 84 (95)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 57899999998865
No 29
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.87 E-value=1.8e-05 Score=66.96 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=44.0
Q ss_pred CeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 027853 85 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 164 (218)
Q Consensus 85 NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 164 (218)
..+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+. ++ .++.|...|+
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-------------------------~v~i~G~-~~-----~i~~Ar~~i~ 155 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGEY-------------------------EVAIIGD-YE-----RAMAAKQAIE 155 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECSS-------------------------EEEEEEE-HH-----HHHHHHHHHH
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcCC-------------------------EEEEEeC-hH-----HHHHHHHHHH
Confidence 368999999999999999999999999752 3555553 33 4688999999
Q ss_pred HhcCC
Q 027853 165 ELLKP 169 (218)
Q Consensus 165 ~LL~p 169 (218)
+|+.-
T Consensus 156 ~li~g 160 (191)
T 1tua_A 156 MLAEG 160 (191)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 99874
No 30
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.85 E-value=9.4e-06 Score=65.78 Aligned_cols=68 Identities=28% Similarity=0.503 Sum_probs=50.8
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~ 150 (218)
..++.||. +++|+|||++|.++|+|+++|||+|.|-.. + + ....-.|.|++. ++
T Consensus 4 ~~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~----------~----~~~~r~v~I~G~-~~- 57 (174)
T 1j4w_A 4 MIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD----D----------G----TTPERIAQITGP-PD- 57 (174)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECC----T----------T----SCSEEEEEEEEC-HH-
T ss_pred EEEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecC----C----------C----CCCccEEEEEeC-HH-
Confidence 45667764 578999999999999999999999999631 1 0 112236778775 33
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 027853 151 IVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~ 168 (218)
.+.+|+++|++++.
T Consensus 58 ----~v~~A~~~I~~~~~ 71 (174)
T 1j4w_A 58 ----RAQHAAEIITDLLR 71 (174)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 57889999988876
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.82 E-value=1.1e-05 Score=64.21 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=49.7
Q ss_pred eeeEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecC
Q 027853 68 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 147 (218)
Q Consensus 68 vk~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~ 147 (218)
+....++.||. .++|+|||++|.++|+|+++|||+|.|-..|+ ..-.|.|++.
T Consensus 3 ~~~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~--------------------~~r~v~I~G~- 55 (160)
T 2jzx_A 3 VTLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP- 55 (160)
T ss_dssp CEEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT--------------------TEEEEEEEEE-
T ss_pred ccEEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCCC--------------------CceEEEEEeC-
Confidence 34577788874 57899999999999999999999999975321 1225777775
Q ss_pred chhhHHHHHHHHHHHHHHhc
Q 027853 148 PANIVDIRLRQAQEIIEELL 167 (218)
Q Consensus 148 ~~~~~~~rl~~A~e~Ie~LL 167 (218)
++ .+.+|..+|.+++
T Consensus 56 ~~-----~v~~A~~~I~~~i 70 (160)
T 2jzx_A 56 TN-----AIFKAFAMIIDKL 70 (160)
T ss_dssp HH-----HHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHH
Confidence 22 4567777776554
No 32
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.80 E-value=7.5e-06 Score=66.49 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=52.8
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
...++.||. +++|+|||++|.++|+|+++|||+|.|-..... + ....=.|.|++.. +
T Consensus 104 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~------------~----~~~~~~v~I~G~~-~ 160 (178)
T 2anr_A 104 NQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG------------I----NLQNRVVTVSGEP-E 160 (178)
T ss_dssp GEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC--------------------CCEEEEEEESSH-H
T ss_pred eEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC------------C----CCCceEEEEEcCH-H
Confidence 466788873 688999999999999999999999999753210 0 0112357777752 2
Q ss_pred hhHHHHHHHHHHHHHHhcCC
Q 027853 150 NIVDIRLRQAQEIIEELLKP 169 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~p 169 (218)
.+++|+++|.++|.-
T Consensus 161 -----~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 161 -----QNRKAVELIIQKIQE 175 (178)
T ss_dssp -----HHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHHHh
Confidence 578999999998863
No 33
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.78 E-value=1.9e-05 Score=64.13 Aligned_cols=74 Identities=20% Similarity=0.388 Sum_probs=52.4
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
.+.++.||. .++|+|||++|.++|+|+++|||+|.|--.+... ++ .. .=.|.|++. ++
T Consensus 6 ~~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-----------~~---~~-er~v~I~G~-~~ 63 (178)
T 2anr_A 6 YFLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-----------PG---TT-ERVCLIQGT-IE 63 (178)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-----------TT---SS-EEEEEEEEC-HH
T ss_pred EEEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-----------CC---CC-CceEEEEeC-HH
Confidence 356777774 5789999999999999999999999996432100 11 11 124667774 32
Q ss_pred hhHHHHHHHHHHHHHHhcCCC
Q 027853 150 NIVDIRLRQAQEIIEELLKPV 170 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~pv 170 (218)
.+.+|+++|.+++.-.
T Consensus 64 -----~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 64 -----ALNAVHGFIAEKIREM 79 (178)
T ss_dssp -----HHHHHHHHHHHHHTCC
T ss_pred -----HHHHHHHHHHHHHhcc
Confidence 5788999999888743
No 34
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.73 E-value=3.5e-05 Score=66.25 Aligned_cols=53 Identities=28% Similarity=0.546 Sum_probs=44.3
Q ss_pred eeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHHH
Q 027853 86 FVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEE 165 (218)
Q Consensus 86 fvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~Ie~ 165 (218)
.+|||||+.|.|+|.||..|||+|.|-++ .|.|.+. ++ .++.|...|++
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~-------------------------~v~i~G~-~~-----~i~~A~~~i~~ 187 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK-------------------------TVAIIGN-PI-----QIEIAKTAIEK 187 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT-------------------------EEEEEEC-HH-----HHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe-------------------------EEEEEeC-HH-----HHHHHHHHHHH
Confidence 58999999999999999999999999641 3666764 33 57899999999
Q ss_pred hcCC
Q 027853 166 LLKP 169 (218)
Q Consensus 166 LL~p 169 (218)
|+.-
T Consensus 188 li~g 191 (219)
T 2e3u_A 188 LARG 191 (219)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9974
No 35
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.70 E-value=3.4e-05 Score=61.59 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=47.3
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~ 150 (218)
+.++.||. .++|.|||++|.++|+|+++|||+|.|--.+. + ....--|.|++ +++
T Consensus 4 ~~~~~ip~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~-------------~----~~~~r~v~I~G-~~e- 58 (163)
T 3krm_A 4 MVQVFIPA------QAVGAIIGKKGQHIKQLSRFASASIKIAPPET-------------P----DSKVRMVIITG-PPE- 58 (163)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCEEEECCCSS-------------T----TCSEEEEEEEE-CHH-
T ss_pred EEEEEech------hhcceeECCCcHHHHHHHHHHCCeEEEcCCCC-------------C----CCCceEEEEEc-CHH-
Confidence 56677773 47899999999999999999999999975321 1 11222477777 443
Q ss_pred hHHHHHHHHHHHHHHhc
Q 027853 151 IVDIRLRQAQEIIEELL 167 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL 167 (218)
.+.+|..+|.+++
T Consensus 59 ----~v~~A~~~I~~~~ 71 (163)
T 3krm_A 59 ----AQFKAQGRIYGKL 71 (163)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 3556666665544
No 36
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.66 E-value=1.8e-05 Score=59.81 Aligned_cols=64 Identities=13% Similarity=0.265 Sum_probs=50.0
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCe-EEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCR-VYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgck-I~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
+..+.||. .++|.+|||+|.|+|+|+++|||+ |.|-- ++=.|.|.+.+.+
T Consensus 16 i~~i~I~~------dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----------------------ddG~V~I~g~~~e 66 (91)
T 2cpq_A 16 HEEFVVRE------DLMGLAIGTHGSNIQQARKVPGVTAIELDE-----------------------DTGTFRIYGESAD 66 (91)
T ss_dssp EEEEECCH------HHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----------------------TTTEEEEEESSHH
T ss_pred EEEEEECh------HHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----------------------CCCEEEEEECCHH
Confidence 45556763 468999999999999999999998 99941 0126889997755
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.+-.
T Consensus 67 -----a~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 67 -----AVKKARGFLEFVED 80 (91)
T ss_dssp -----HHHHHHHHHSCCCC
T ss_pred -----HHHHHHHHHHhhhe
Confidence 57899999987654
No 37
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.27 E-value=0.00015 Score=70.78 Aligned_cols=64 Identities=23% Similarity=0.456 Sum_probs=49.4
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~ 149 (218)
++..+.||. ..+|.||||+|.|+|.|+++|||+|.|--. =.|.|.+.+.+
T Consensus 567 ~~~~~~I~~------~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~------------------------G~V~I~~~~~~ 616 (630)
T 3u1k_A 567 VVETVQVPL------SKRAKFVGPGGYNLKKLQAETGVTISQVDE------------------------ETFSVFAPTPS 616 (630)
T ss_dssp EEEEEECCH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSS------------------------SEEEEEESSHH
T ss_pred eEEEEEeCh------hHhheeECCCChhHHHHHHHHCCEEEEcCC------------------------cEEEEEeCCHH
Confidence 356667774 467999999999999999999999988521 16889997754
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.|++
T Consensus 617 -----~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 617 -----AMHEARDFITEICK 630 (630)
T ss_dssp -----HHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHHhC
Confidence 57899999988763
No 38
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.52 E-value=0.0016 Score=51.95 Aligned_cols=71 Identities=18% Similarity=0.409 Sum_probs=50.2
Q ss_pred EEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCC-eEEEecccCCCCCCcccccCCCCCCCCCCCCc-eEEEEecCch
Q 027853 72 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGC-RVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPL-HILIEADLPA 149 (218)
Q Consensus 72 ~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgc-kI~IRGrGS~kd~~~e~~l~g~p~~e~~~epL-HVlI~a~~~~ 149 (218)
..+.||- +.+|++||-+|.|+|.+++.||| +|.|.+..... .+ .++.+ -|.|++.- +
T Consensus 69 ~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~----------~~----~~~~~~~vtI~G~~-~ 127 (144)
T 2qnd_A 69 DVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN----------VP----QEEGMVPFVFVGTK-D 127 (144)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----------CC----CCTTEEEEEEEEEH-H
T ss_pred EEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----------cc----ccCCeeEEEEEeCH-H
Confidence 5566663 46799999999999999999998 99998642210 01 12222 35677742 2
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 027853 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.++.|+++|+.+|.
T Consensus 128 -----~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 128 -----SIANATVLLDYHLN 141 (144)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 57899999998875
No 39
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.25 E-value=0.0023 Score=54.88 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=49.2
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~ 150 (218)
+.++.||. +.+|.||||.|.|++.|+++|||+|.|--. + =.|.|.+.+...
T Consensus 35 i~~i~IP~------~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~----~-------------------g~V~I~~~~~t~ 85 (219)
T 2e3u_A 35 EEYVKIPK------DRIAVLIGKKGQTKKEIEKRTKTKITIDSE----T-------------------GEVWITSTKETE 85 (219)
T ss_dssp EEEEECCH------HHHHHHHCGGGHHHHHHHHHHTEEEEECTT----T-------------------CEEEEEECTTCC
T ss_pred EEEEEeCH------HHhhhhhcccHHHHHHHHHHHCcEEEEEcC----C-------------------CEEEEecCCCCC
Confidence 55777874 457999999999999999999999999521 0 146666643000
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 027853 151 IVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~ 168 (218)
- ...+++|+++|+.+..
T Consensus 86 d-~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 86 D-PLAVWKARDIVLAIGR 102 (219)
T ss_dssp S-HHHHHHHHHHHHHHHT
T ss_pred C-HHHHHHHHHHHHHHhc
Confidence 0 1258899999999884
No 40
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.78 E-value=0.012 Score=44.61 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=45.7
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHH-hCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEAT-TGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~e-TgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~ 148 (218)
.+..|.||.+- -+.|||++|.|+|+|+.+ +++.|.+=. ++. -|.|++. +
T Consensus 27 ~t~~i~vp~~~------h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------------------~~~-~ItI~G~-~ 76 (102)
T 2ctf_A 27 TVSSVAAPSWL------HRFIIGKKGQNLAKITQQMPKVHIEFTE----------------------GED-KITLEGP-T 76 (102)
T ss_dssp EEEEEECCSTT------HHHHHTTTTCHHHHHHHHCSSSEEEECS----------------------SSC-EEEEEEC-H
T ss_pred EEEEEEeCHHH------HhhhcCCCCccHHHHHHHcCCcEEEeCC----------------------CCC-EEEEECC-H
Confidence 56778888554 478999999999999996 588876542 011 4777775 2
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 027853 149 ANIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~ 168 (218)
+ .+++|++.|+.++.
T Consensus 77 ~-----~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 77 E-----DVSVAQEQIEGMVK 91 (102)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 2 46778888877765
No 41
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=95.74 E-value=0.0018 Score=64.27 Aligned_cols=65 Identities=26% Similarity=0.473 Sum_probs=10.1
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~ 150 (218)
+..+-||.+ .+|.+|||+|.|+|.|+++||++|.|--.| .|.|.+.+.+
T Consensus 571 ~~~~~i~~~------ki~~vig~gg~~i~~i~~~tg~~idi~ddG------------------------~v~I~~~~~~- 619 (726)
T 4aid_A 571 IETINIPTD------KIREVIGSGGKVIREIVATTGAKVDINDDG------------------------VVKVSASDGA- 619 (726)
T ss_dssp -------------------------------------------------------------------------CCSCHH-
T ss_pred EEEEeCCHH------HHHhhcCCCchhHHHHHHHHCCceeEECCc------------------------eEEEEeCCHH-
Confidence 445556644 568999999999999999999999876322 4566665543
Q ss_pred hHHHHHHHHHHHHHHhcCCC
Q 027853 151 IVDIRLRQAQEIIEELLKPV 170 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~pv 170 (218)
.+++|++.|+.++...
T Consensus 620 ----~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 620 ----KIKAAIDWIKSITDEA 635 (726)
T ss_dssp ----HHHHHHHC--------
T ss_pred ----HHHHHHHHHHHHhhhh
Confidence 6788999999888643
No 42
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=95.56 E-value=0.02 Score=52.86 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=50.4
Q ss_pred eeEEEEecCCCCCCCCCeeeeEeCCCc--chHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 027853 69 KRILRLEIPVDTYPNFNFVGRLLGPRG--NSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 146 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrIlGPrG--~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~ 146 (218)
+.+.++.||. .|.+.|||.+| +++++|.++|||+|.+=-.++-.. .+ ...-=-|.|++.
T Consensus 29 ~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~---------~~----~~ks~~VtItG~ 89 (376)
T 3n89_A 29 RVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGT---------TP----DPFAQQVTITGY 89 (376)
T ss_dssp EEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSS---------SC----CTTTTEEEEEEE
T ss_pred EEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCccccc---------CC----cCCCCeEEEEcC
Confidence 4567777773 56678999999 999999999999999954321000 00 001114788885
Q ss_pred CchhhHHHHHHHHHHHHHHh
Q 027853 147 LPANIVDIRLRQAQEIIEEL 166 (218)
Q Consensus 147 ~~~~~~~~rl~~A~e~Ie~L 166 (218)
++ .+++|.+.|.++
T Consensus 90 -~e-----nVE~AR~~I~~l 103 (376)
T 3n89_A 90 -FG-----DVDRARMLMRRN 103 (376)
T ss_dssp -HH-----HHHHHHHHHHHS
T ss_pred -HH-----HHHHHHHHHHhc
Confidence 22 578999999886
No 43
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=94.29 E-value=0.026 Score=44.80 Aligned_cols=30 Identities=13% Similarity=0.390 Sum_probs=26.0
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhC
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTG 106 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTg 106 (218)
++++.||. .++|.+||++|.++|+|++++|
T Consensus 5 ~~~~~Vp~------~~vG~~IG~~G~~I~~i~~e~g 34 (144)
T 2qnd_A 5 HEQFIVRE------DLMGLAIGTHGANIQQARKVPG 34 (144)
T ss_dssp EEEEECCG------GGHHHHHCGGGHHHHHHHTSTT
T ss_pred EEEEEECC------cceeeEECCChhHHHHHHHHHC
Confidence 56677763 5789999999999999999999
No 44
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=92.24 E-value=0.033 Score=45.10 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=27.5
Q ss_pred CCeeeeEeCCCcchHHHHHHHhCCeEEEe
Q 027853 84 FNFVGRLLGPRGNSLKRVEATTGCRVYIR 112 (218)
Q Consensus 84 ~NfvGrIlGPrG~TlKrIE~eTgckI~IR 112 (218)
-..++.||||+|+.++.||..|++.|.|-
T Consensus 64 ~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 64 PRLLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp GGGHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred hhhhhcccCCCcCccchHHhhcceeEEEe
Confidence 46899999999999999999999999997
No 45
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.63 E-value=0.033 Score=55.22 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=0.0
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecccCC
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSI 117 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~ 117 (218)
...+-||.+ .+|.+|||+|.|++.|.++||++|-|...|.+
T Consensus 561 ~~~~~i~~~------ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v 601 (723)
T 3cdi_A 561 IHTIKINPD------KIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 601 (723)
T ss_dssp -----------------------------------------------
T ss_pred EEEEEECHH------HhcccccccceeeeeeehhhCceEEecCCccE
Confidence 344446544 46789999999999999999999999865543
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=88.09 E-value=0.38 Score=44.32 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=41.0
Q ss_pred eeeeEeCCCc--chHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHH
Q 027853 86 FVGRLLGPRG--NSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEII 163 (218)
Q Consensus 86 fvGrIlGPrG--~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~I 163 (218)
++..|||-+| .++++|.++|||+|..=..++..+. ..+.-.|.|++. . ..+.+|.+.|
T Consensus 196 ~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~--------------~~~~~~ItItGs--~----e~V~~Ark~I 255 (376)
T 3n89_A 196 YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET--------------RGNIYEIKVVGN--I----DNVLKARRYI 255 (376)
T ss_dssp GHHHHTCCTTSCCHHHHHHHHHTCEEECC-----------------------CCEEEEEEESC--H----HHHHHHHHHH
T ss_pred HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc--------------cCCceEEEEEeC--H----HHHHHHHHHH
Confidence 4678999999 5569999999999997654432110 011235677763 2 2578999999
Q ss_pred HHhcC
Q 027853 164 EELLK 168 (218)
Q Consensus 164 e~LL~ 168 (218)
+.||=
T Consensus 256 ~~lLP 260 (376)
T 3n89_A 256 MDLLP 260 (376)
T ss_dssp HHTSE
T ss_pred HhhCC
Confidence 99873
No 47
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=87.41 E-value=0.018 Score=45.74 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=35.8
Q ss_pred CCCCCCCCCC---CCCCCCCCCCCCCCCCCCcccccCC-CCCCCCCCCCCCCC
Q 027853 14 RHRSPSPMAS---SNLMSNVAGTGLGGWNGLPQERLGG-PPGMTMDWQSAPAS 62 (218)
Q Consensus 14 ~~~sp~~~~~---~~~~~n~~~~~~~~w~~~~~er~~~-~~~~~~~~~~~p~~ 62 (218)
+.|||||++. .|.+.||+ .+.-...|..||+.+ .+.+.+++.+.||.
T Consensus 69 ~~RSPSPpP~Yd~~G~R~NTR--E~R~r~~LE~ER~~lIe~~~k~~P~fkpP~ 119 (124)
T 4fxw_B 69 EDRSPSPEPIYNSEGKRLNTR--EFRTRKKLEEERHNLITEMVALNPDFKPPA 119 (124)
T ss_dssp TSSCCCCCCCBCTTSCBSSCH--HHHHHHHHHHHHHHHHHHGGGTCSSCCCCC
T ss_pred ccCCCCCCCccCccccccchH--HHHHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 5799999984 48899997 444577888899964 56778888887554
No 48
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=85.99 E-value=0.042 Score=54.76 Aligned_cols=36 Identities=28% Similarity=0.728 Sum_probs=11.7
Q ss_pred EEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEecc
Q 027853 73 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 114 (218)
Q Consensus 73 ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRGr 114 (218)
.+-||.+. +|.+|||+|.++|.|+++||++|.|-..
T Consensus 601 ~~~I~~~k------i~~vIG~gGk~Ik~I~~~~G~~IdI~~d 636 (757)
T 1e3p_A 601 TVKIPVDK------IGEVIGPKRQMINQIQEDTGAEITIEDD 636 (757)
T ss_dssp CC------------------------CTTCCCCCSCC-----
T ss_pred EEEEChHH------eehcccccceeeehhhHhhCCEEEecCC
Confidence 34577555 4889999999999999999999988753
No 49
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=85.06 E-value=0.18 Score=42.32 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=31.1
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEec
Q 027853 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 113 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IRG 113 (218)
..++.||- +-+|.|+|-.|.+.|.|++.+||+|.|-.
T Consensus 5 ~~~i~VP~------~rvg~liGk~g~~~k~i~e~~g~~i~id~ 41 (191)
T 1tua_A 5 RIYVKVKP------ERLGAVIGPRGEVKAEIMRRTGTVITVDT 41 (191)
T ss_dssp CEEEECCG------GGHHHHHCGGGHHHHHHHHHHTEEEEEET
T ss_pred ceEEECCH------HHhhHHHhcCHhHHHHHHHHHCcEEEEEc
Confidence 44666663 45699999999999999999999999964
No 50
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=71.05 E-value=14 Score=31.12 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=49.7
Q ss_pred CeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 027853 85 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 164 (218)
Q Consensus 85 NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 164 (218)
+.+.|++||+|+-+..|.+.++|+|.| |. + | .|+|.+.++... ..+..|+..||
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~v-G~----N-----------G--------~IWi~~~~~~~~--~~~~~ai~~~e 210 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFV-AR----N-----------G--------RIHLECPNEDLE--AIAVMAIKIID 210 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEE-ET----T-----------T--------EEEEECSCHHHH--HHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-eC----C-----------C--------EEEEecCCHHHH--HHHHHHHHHHH
Confidence 578899999999999999899999988 42 1 1 688998776543 35777888887
Q ss_pred HhcCCCCchhHHHHH
Q 027853 165 ELLKPVDESQDYIKR 179 (218)
Q Consensus 165 ~LL~pv~e~~d~~K~ 179 (218)
.--. +.+-.|.+|+
T Consensus 211 ~~~~-~~~l~~~v~~ 224 (235)
T 2z0s_A 211 EEAY-TSGLTKRIIK 224 (235)
T ss_dssp HCSC-CTTCHHHHHH
T ss_pred hhhh-hhhHHHHHHH
Confidence 7544 4445555553
No 51
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=65.96 E-value=1.6 Score=34.97 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.9
Q ss_pred eeeeEeCCCcchHHHHHHHhCCeEEEec
Q 027853 86 FVGRLLGPRGNSLKRVEATTGCRVYIRG 113 (218)
Q Consensus 86 fvGrIlGPrG~TlKrIE~eTgckI~IRG 113 (218)
-+|..+|++|+.++.|+++.|-||-|--
T Consensus 46 ~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 46 EAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp CHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CccccCccCchHHHHHHHHhCCeeEEEE
Confidence 3899999999999999999999998875
No 52
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=42.24 E-value=9.4 Score=32.75 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=31.7
Q ss_pred ceeeEEEEecCCCCCCCCCeeeeEeCCCcchHHHH--------HHHhCCeEEEe
Q 027853 67 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRV--------EATTGCRVYIR 112 (218)
Q Consensus 67 ~vk~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrI--------E~eTgckI~IR 112 (218)
.++....|++.-+.. .|-|||-+|..+|+| |+..||||.+.
T Consensus 237 ~~~i~a~i~ve~~~~-----k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 237 MLVIKGEIIVDRENL-----KPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp SEEEEEEEEESSGGG-----HHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred eEEEEEEEEEccCCc-----ceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 456667777766654 388999999999987 66789998876
No 53
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=39.64 E-value=48 Score=27.81 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=47.2
Q ss_pred CeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 027853 85 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 164 (218)
Q Consensus 85 NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 164 (218)
+.+.|++|++++-++.|.+.++|.|.| |. .| .|+|.+.+. . ...+..|...+|
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~---------------NG--------~IWi~~~~~-~--~~~~~~ai~~~e 197 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ---------------NG--------LIWVNGDRR-K--VSIAEEAIYLIE 197 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT---------------TS--------EEEEESCHH-H--HHHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC---------------Cc--------EEEEeCCch-h--HHHHHHHHHHHH
Confidence 466799999999999999999999988 32 11 688886433 1 235667777777
Q ss_pred HhcCCCCchhHHHHHHHHHHH
Q 027853 165 ELLKPVDESQDYIKRQQLREL 185 (218)
Q Consensus 165 ~LL~pv~e~~d~~K~~QL~EL 185 (218)
.--. ..+-.|.+| +-|++.
T Consensus 198 ~~~~-~~~l~~~v~-~~l~~~ 216 (229)
T 2ba0_A 198 QEAH-TEGLTDRVA-EFIKRR 216 (229)
T ss_dssp HCSC-CSSHHHHHH-HHHHHH
T ss_pred hhhh-hhhHHHHHH-HHHHHh
Confidence 5433 233344444 335553
No 54
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=38.54 E-value=8.1 Score=33.72 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=30.7
Q ss_pred CCCCCCeeeeEeCCCcchHHHH-HHHhCCeEEEec
Q 027853 80 TYPNFNFVGRLLGPRGNSLKRV-EATTGCRVYIRG 113 (218)
Q Consensus 80 ~yP~~NfvGrIlGPrG~TlKrI-E~eTgckI~IRG 113 (218)
..|+++-+|..+|++|+.++.| ++..|=||-|--
T Consensus 121 ~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 121 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 4588999999999999999999 788899998874
No 55
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=38.29 E-value=56 Score=25.32 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=15.9
Q ss_pred hHHHHHHHhCCeEEEecc
Q 027853 97 SLKRVEATTGCRVYIRGK 114 (218)
Q Consensus 97 TlKrIE~eTgckI~IRGr 114 (218)
.+++||++.|++++.|..
T Consensus 58 ~I~~LE~~lG~~Lf~R~~ 75 (135)
T 2ijl_A 58 LVDALNHMFRQPVICSQR 75 (135)
T ss_dssp HHHHHHHHBSSCSEEECC
T ss_pred HHHHHHHHHCCeeEEecC
Confidence 468899999999999975
No 56
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=36.41 E-value=6.3 Score=31.77 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=18.3
Q ss_pred eeeEeCCCcchHHHHHHHhC
Q 027853 87 VGRLLGPRGNSLKRVEATTG 106 (218)
Q Consensus 87 vGrIlGPrG~TlKrIE~eTg 106 (218)
.|+|||-+|.|++.||-.+.
T Consensus 44 ~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 44 SALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp GTTTTCGGGHHHHHHHHHHH
T ss_pred cceEECCCCcchHHHHHHHH
Confidence 59999999999999999874
No 57
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=35.08 E-value=57 Score=24.51 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=30.4
Q ss_pred HhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh--hHHHHHHHHHHHHHHhcC
Q 027853 104 TTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN--IVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 104 eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~--~~~~rl~~A~e~Ie~LL~ 168 (218)
..|.++.|+|+|--.... + ...+|+|.+....|.+ .- ....+++++|+.
T Consensus 47 ~~G~~~rl~G~Gmp~~~~--------~----~~GDL~V~~~V~~P~~~~ls----~~q~~~l~~l~~ 97 (121)
T 1xao_A 47 APGMRKVIEGKGMPIPKY--------G----GYGNLIIKFTIKFPENHFTS----EENLKKLEEILP 97 (121)
T ss_dssp CTTCEEEETTCSCC------------------CCCEEEEEEEECCCTTCSC----HHHHHHHHHHSC
T ss_pred CCCcEEEECCCCCCCCCC--------C----CCCCEEEEEEEECCCCCCCC----HHHHHHHHHHcc
Confidence 458899999988532110 0 2468999999988764 21 234566777765
No 58
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=34.62 E-value=1.3e+02 Score=22.24 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=30.2
Q ss_pred chHHHHHHHh-CCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHHHhc
Q 027853 96 NSLKRVEATT-GCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELL 167 (218)
Q Consensus 96 ~TlKrIE~eT-gckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~Ie~LL 167 (218)
.++..|+... +..|.||--|. ..-++|++++.+.+ .++..++..++.|++++
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT-------------------EP~irvy~Ea~~~~-~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT-------------------EDIVRVYAEANSQE-SADRLAYEVSLLVFQLA 97 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS-------------------SSSEEEEEEESSHH-HHHHHHHHHHHHHHHHT
T ss_pred hhhhcEEEEcCCcEEEEEeCCC-------------------ccEEEEEEEECCHH-HHHHHHHHHHHHHHHHH
Confidence 4555565554 56889996443 23479999998643 33444444444444443
No 59
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=34.59 E-value=11 Score=34.57 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=31.3
Q ss_pred CCCCCCeeeeEeCCCcchHHHHHHHh-CCeEEEec
Q 027853 80 TYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRG 113 (218)
Q Consensus 80 ~yP~~NfvGrIlGPrG~TlKrIE~eT-gckI~IRG 113 (218)
..|+++-||..||++|+.++.|.++. |=||-|--
T Consensus 244 ~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 244 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 56889999999999999999999999 99998885
No 60
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=32.70 E-value=71 Score=28.23 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 027853 99 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 164 (218)
Q Consensus 99 KrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 164 (218)
..+-+.-|+++.+-||...+...|- =||.+.+++.+ .+..+..++.+.++
T Consensus 350 ~~~~~~p~~~~~~ygk~~~~~~rkm---------------Ghv~~~~~~~~-~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 350 ECALSIPNASIHLYSKGAAKPGRKM---------------GHITVTAPTMH-EAETHIQPLIDVVD 399 (403)
T ss_dssp HHHTTSTTEEEEECCCCSCCTTCEE---------------EEEEEECSSHH-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEECCCCCCCCCCee---------------EEEEEEcCCHH-HHHHHHHHHHhhhh
Confidence 3344567899999998654443221 29999998754 33445555555544
No 61
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=32.62 E-value=4.1 Score=35.08 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=32.9
Q ss_pred CeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 027853 85 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 164 (218)
Q Consensus 85 NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 164 (218)
+.+.|+||++++-+..|.+.++|.|.| |. .| .|+|.+.++...+ .+..|+..||
T Consensus 164 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~---------------NG--------~IWi~~~~~~~~~--~~~~aI~~~e 217 (251)
T 2je6_I 164 VKVPRVIGKNKSMYETLTSKSGCSIFV-AN---------------NG--------RIWATCPSRFSEE--ILIEAIRKIE 217 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEE-CT---------------TS--------EEEC-----CTTC--CTHHHHTTTT
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-EC---------------Cc--------EEEEeCCCHHHHH--HHHHHHHHHH
Confidence 467789999999999999999999988 32 11 5788876654321 3455666665
Q ss_pred Hh
Q 027853 165 EL 166 (218)
Q Consensus 165 ~L 166 (218)
.-
T Consensus 218 ~~ 219 (251)
T 2je6_I 218 NE 219 (251)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 62
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=26.40 E-value=29 Score=27.96 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=17.1
Q ss_pred hHHHHHHHhCCeEEEeccc
Q 027853 97 SLKRVEATTGCRVYIRGKG 115 (218)
Q Consensus 97 TlKrIE~eTgckI~IRGrG 115 (218)
.+|+||++.|++++.|++|
T Consensus 40 ~i~~LE~~lg~~Lf~R~~~ 58 (303)
T 3isp_A 40 RIKSLEQQVGQVLVVREKP 58 (303)
T ss_dssp HHHHHHHHHTSCCEECSSS
T ss_pred HHHHHHHHhCCeeEEcCCC
Confidence 5899999999999999864
No 63
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=26.28 E-value=31 Score=30.34 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=38.3
Q ss_pred CeeeeEeCCCcchHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 027853 85 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 164 (218)
Q Consensus 85 NfvGrIlGPrG~TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 164 (218)
+++-|++|+++.-++.|.+.++|.|.|== .| .|+|.+.++... ..+..|...+|
T Consensus 219 ~lvrrl~~~~~~~l~~L~~~~~~eI~vG~----------------NG--------~IWI~~~~~~~~--~~i~~aI~~~e 272 (289)
T 2nn6_G 219 GLIRKLLAPDCEIIQEVGKLYPLEIVFGM----------------NG--------RIWVKAKTIQQT--LILANILEACE 272 (289)
T ss_dssp HHHHHHHCTTCSHHHHTTCSSSCCCEEET----------------TT--------EEEECCSSHHHH--HHHHHHHHHTT
T ss_pred HHhhhhhcCchhHHHHhcccCCeEEEEEC----------------Cc--------EEEEecCChhHH--HHHHHHHHHhh
Confidence 46778899999999999888999997641 11 688888766432 24556666663
No 64
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=25.21 E-value=11 Score=29.96 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=30.3
Q ss_pred eEEEEecCCCCCCCCCeeeeEeCCCcchHHHHHHHhCCeEEEe
Q 027853 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR 112 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrIlGPrG~TlKrIE~eTgckI~IR 112 (218)
+...+.||-++. ++.||-+|.+++...+.||++|-|.
T Consensus 103 ~~~~V~V~~~q~------slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 103 KQVVIKVSEDDK------GAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEECTTTH------HHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EEEEEEEChHHh------hhccCCCCHHHHHHHHHhCCeeCce
Confidence 355667775554 7899999999999999999988775
No 65
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=23.01 E-value=62 Score=26.23 Aligned_cols=65 Identities=22% Similarity=0.158 Sum_probs=42.4
Q ss_pred CeeeeEeCCCcc-hHHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHH-
Q 027853 85 NFVGRLLGPRGN-SLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEI- 162 (218)
Q Consensus 85 NfvGrIlGPrG~-TlKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~~~~~~rl~~A~e~- 162 (218)
+++-|++|-+|+ .++.|.+.++|.|.|= . .| .|+|.+.++.+. ..+..|...
T Consensus 100 ~~v~rl~~~~~~~~l~~l~~~~~~ei~vG-~---------------NG--------~IWi~~~~~~~~--~~v~~aI~~~ 153 (175)
T 2ja9_A 100 NFARQLLFNNDFPLLKVLAAHTKFEVAIG-L---------------NG--------KIWVKCEELSNT--LACYRTIMEC 153 (175)
T ss_dssp HHHHHHHHCTTCCHHHHHHTTCCCEEEEE-T---------------TT--------EEEEECSSHHHH--HHHHHHHHHH
T ss_pred HHhhHHhcCCCcchHHhhhccCCeEEEEE-C---------------Cc--------EEEEecCCHHHH--HHHHHHHHHH
Confidence 577788885555 8999999999999763 1 11 689998776433 245566666
Q ss_pred HHHhcCCCCchhHHHH
Q 027853 163 IEELLKPVDESQDYIK 178 (218)
Q Consensus 163 Ie~LL~pv~e~~d~~K 178 (218)
++. |. .++++.+-
T Consensus 154 ~~~-~~--~~~~~~~~ 166 (175)
T 2ja9_A 154 CQK-ND--TAAFKDIA 166 (175)
T ss_dssp HHH-CC--GGGHHHHH
T ss_pred hcc-CC--HHHHHHHH
Confidence 543 44 33444443
No 66
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=21.80 E-value=32 Score=31.12 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=29.6
Q ss_pred CCCCCCeeeeEeCCCcchHHHHHHHh-CCeEEEec
Q 027853 80 TYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRG 113 (218)
Q Consensus 80 ~yP~~NfvGrIlGPrG~TlKrIE~eT-gckI~IRG 113 (218)
..|+++-+|..+|++|+.++.+..+. |=+|-|=-
T Consensus 240 ~d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii~ 274 (344)
T 1hh2_P 240 NDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLK 274 (344)
T ss_dssp SSTTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEE
T ss_pred cCCCccccceeeccCCcEeHHHHHHhCCCeeeEEe
Confidence 45789999999999999999999998 77777653
No 67
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=21.46 E-value=64 Score=27.34 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=35.6
Q ss_pred eeeeEeCCCcc-------h-----HHHHHHHhCCeEEEecccCCCCCCcccccCCCCCCCCCCCCceEEEEecCch-hhH
Q 027853 86 FVGRLLGPRGN-------S-----LKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA-NIV 152 (218)
Q Consensus 86 fvGrIlGPrG~-------T-----lKrIE~eTgckI~IRGrGS~kd~~~e~~l~g~p~~e~~~epLHVlI~a~~~~-~~~ 152 (218)
.+|+||||||. | .+.|+..-..+|..|-+ -..-+|+-|--.+.. +.+
T Consensus 127 ~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~r~d--------------------k~g~i~~~IGk~~f~~e~L 186 (229)
T 3u42_A 127 KLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRND--------------------KTGAIHAPVGKASFPPEKL 186 (229)
T ss_dssp HHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEEECC--------------------TTSEEEEEEEETTSCHHHH
T ss_pred hhccccccccccccCCCCCCCCCHHHHHHHHhCceEEEEeC--------------------CCCeecccccCCCCCHHHH
Confidence 57999999975 2 35555544446777742 123478888765433 333
Q ss_pred HHHHHHHHHHHHHhc
Q 027853 153 DIRLRQAQEIIEELL 167 (218)
Q Consensus 153 ~~rl~~A~e~Ie~LL 167 (218)
.+-+...++.|..++
T Consensus 187 ~eNi~a~i~~i~~~k 201 (229)
T 3u42_A 187 ADNIRAFIRALEAHK 201 (229)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 344555555555443
No 68
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=21.31 E-value=25 Score=27.49 Aligned_cols=15 Identities=20% Similarity=0.882 Sum_probs=12.3
Q ss_pred HHHHHhCCeEEEecc
Q 027853 100 RVEATTGCRVYIRGK 114 (218)
Q Consensus 100 rIE~eTgckI~IRGr 114 (218)
-|-..|||||.|+|.
T Consensus 80 DIasntgcKIRvqgd 94 (124)
T 2kie_A 80 DIASNSGCKIRVQGD 94 (124)
T ss_dssp CGGGCSSEEEEEESS
T ss_pred eccCCCCcEEEEecc
Confidence 456678999999994
Done!