Query 027854
Match_columns 218
No_of_seqs 139 out of 966
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 1.5E-65 3.3E-70 437.5 16.7 169 27-204 1-169 (188)
2 PRK00642 inorganic pyrophospha 100.0 4.1E-64 8.8E-69 433.6 16.6 170 31-206 5-193 (205)
3 PLN02707 Soluble inorganic pyr 100.0 4.2E-64 9.1E-69 447.6 16.9 190 9-206 32-244 (267)
4 PRK01250 inorganic pyrophospha 100.0 3.3E-60 7.1E-65 401.2 16.8 159 37-204 2-164 (176)
5 KOG1626 Inorganic pyrophosphat 100.0 4E-60 8.6E-65 418.3 9.2 195 10-211 4-225 (279)
6 cd00412 pyrophosphatase Inorga 100.0 5.1E-58 1.1E-62 381.1 14.4 143 60-204 6-148 (155)
7 PRK02230 inorganic pyrophospha 100.0 6.7E-57 1.5E-61 383.2 15.2 148 49-204 3-150 (184)
8 PF00719 Pyrophosphatase: Inor 100.0 4.5E-55 9.7E-60 363.3 11.2 142 59-203 2-144 (156)
9 COG0221 Ppa Inorganic pyrophos 100.0 9.5E-53 2.1E-57 354.4 15.1 159 36-203 1-159 (171)
10 KOG1626 Inorganic pyrophosphat 90.1 0.31 6.7E-06 44.6 3.4 55 13-73 16-71 (279)
11 PF07177 Neuralized: Neuralize 45.3 23 0.00049 25.8 2.7 22 111-132 30-51 (69)
12 cd05694 S1_Rrp5_repeat_hs2_sc2 40.4 24 0.00052 25.5 2.2 27 96-132 30-56 (74)
13 cd01460 vWA_midasin VWA_Midasi 32.3 21 0.00044 32.5 0.9 27 154-180 237-263 (266)
14 smart00588 NEUZ domain in neur 32.2 61 0.0013 26.0 3.5 45 108-156 28-72 (123)
15 PF08437 Glyco_transf_8C: Glyc 32.0 22 0.00047 25.1 0.8 14 32-45 10-23 (57)
16 PF06249 EutQ: Ethanolamine ut 26.7 48 0.001 28.0 2.1 29 60-96 122-150 (152)
17 KOG1110 Putative steroid membr 26.5 39 0.00084 29.5 1.5 38 144-182 108-145 (183)
18 cd05695 S1_Rrp5_repeat_hs3 S1_ 24.6 72 0.0016 22.2 2.4 32 96-133 25-56 (66)
19 KOG1439 RAB proteins geranylge 23.3 1.6E+02 0.0034 29.1 5.1 54 108-178 3-56 (440)
20 cd05706 S1_Rrp5_repeat_sc10 S1 22.8 93 0.002 21.4 2.7 14 119-132 47-60 (73)
21 PF11969 DcpS_C: Scavenger mRN 21.5 98 0.0021 24.1 2.8 26 146-175 37-62 (116)
22 COG4766 EutQ Ethanolamine util 21.1 83 0.0018 27.2 2.5 30 60-97 145-174 (176)
23 PF01230 HIT: HIT domain; Int 20.8 34 0.00073 25.3 0.1 68 142-215 25-93 (98)
24 PF05182 Fip1: Fip1 motif; In 20.8 28 0.0006 23.9 -0.4 10 94-103 24-33 (45)
25 PTZ00162 DNA-directed RNA poly 20.5 2.2E+02 0.0048 24.1 5.0 37 118-159 135-171 (176)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=1.5e-65 Score=437.52 Aligned_cols=169 Identities=80% Similarity=1.313 Sum_probs=160.5
Q ss_pred cccCCCcccCcCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEEeEecccCCCCcCcccccccccCCC
Q 027854 27 SMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 106 (218)
Q Consensus 27 ~~~~~~~~~spwHdipl~~~~p~~~n~~~~~~~VIEIPrgs~~KyEidk~~g~i~~DR~l~~~~~yP~NYGfIPqT~~gD 106 (218)
+|.++...+|||||||++++.|+++|| ||||||||++|||+|+++|.|++||++++++.||||||||||||+||
T Consensus 1 ~~~~~~~~~~~whdi~~~~~~~~~v~v------VIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~D 74 (188)
T PLN02373 1 SMSRRSVAAHPWHDLEIGPGAPAIFNC------VVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCED 74 (188)
T ss_pred CcccccccCCccccCCCCCCCCCEEEE------EEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCC
Confidence 467788999999999999998999999 99999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEecCcccCCcceEEEEEeeeEEeEeCCCCceEEEEEecCCccccCCCCCCCCChhHHHHHHHHHHHhhccCCC
Q 027854 107 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVF 186 (218)
Q Consensus 107 gDPLDVlvL~~~p~~~G~vv~vrviG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~~ 186 (218)
|||||||||++.|+.||++++|||||+|+|+|+||+|||||||+++||+|++|+|++|||++++++|+|||++||.++||
T Consensus 75 gDPLDvlvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK 154 (188)
T PLN02373 75 NDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENK 154 (188)
T ss_pred CCccEEEEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cceeehhhhhccccceee
Q 027854 187 IILSYSLIDYLSQHSAVS 204 (218)
Q Consensus 187 ~~~~~~~~~y~~~~~a~~ 204 (218)
.+. ...+.++.+|..
T Consensus 155 ~v~---v~g~~~~~~A~~ 169 (188)
T PLN02373 155 EVA---VNDFLPAEAAIE 169 (188)
T ss_pred eEE---eCCccCHHHHHH
Confidence 864 456777776654
No 2
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=4.1e-64 Score=433.60 Aligned_cols=170 Identities=41% Similarity=0.655 Sum_probs=161.8
Q ss_pred CCcccCcCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEEeEecccCCCCcCcccccccccC------
Q 027854 31 RSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC------ 104 (218)
Q Consensus 31 ~~~~~spwHdipl~~~~p~~~n~~~~~~~VIEIPrgs~~KyEidk~~g~i~~DR~l~~~~~yP~NYGfIPqT~~------ 104 (218)
.+..+|||||||++++.|+++|| ||||||||++|||+|+++|.+++||++++++.||||||||||||+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~------VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~ 78 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCC------YIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGK 78 (205)
T ss_pred cccccCccccCCCCCCCCCEEEE------EEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCccccc
Confidence 56778999999999988999999 999999999999999999999999999999999999999999995
Q ss_pred ------------CCCCcceEEEecCcccCCcce-EEEEEeeeEEeEeCCCCceEEEEEecCCccccCCCCCCCCChhHHH
Q 027854 105 ------------EDSDPMDVLVLMQEPVLPGSF-LRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLA 171 (218)
Q Consensus 105 ------------gDgDPLDVlvL~~~p~~~G~v-v~vrviG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~ 171 (218)
|||||||||||++.|+++|++ ++|||||+|+|+|+||+|||||||+++||+|++|+|++|||+++++
T Consensus 79 ~~~~~~~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~ 158 (205)
T PRK00642 79 LSGEQSGREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLD 158 (205)
T ss_pred ccccccccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHH
Confidence 799999999999999999995 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceeehhhhhccccceeecc
Q 027854 172 EIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVSTT 206 (218)
Q Consensus 172 ~i~~fF~~YK~le~~~~~~~~~~~y~~~~~a~~~~ 206 (218)
+|+|||++||.++||+.+.+.+....++.+|....
T Consensus 159 ~I~~fF~~YK~legk~~k~~~~~g~~~~~~A~~vI 193 (205)
T PRK00642 159 RLQHYFLTYKATPGELIKGVEIVGIYGKEEAQKVI 193 (205)
T ss_pred HHHHHHHHHcCcccCCCCeEEECCCcCHHHHHHHH
Confidence 99999999999999998888888888888887543
No 3
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=4.2e-64 Score=447.59 Aligned_cols=190 Identities=29% Similarity=0.432 Sum_probs=173.7
Q ss_pred CccCCCCCCCCcceeeeecccCCCcccCcCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecC--CCCeEEeEec
Q 027854 9 GSNNSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKA--SGLIKVDRVL 86 (218)
Q Consensus 9 ~~~~~~g~~~~~~~r~~~~~~~~~~~~spwHdipl~~~~p~~~n~~~~~~~VIEIPrgs~~KyEidk~--~g~i~~DR~l 86 (218)
.+..++|+++|.+||+|+. ...|+.+|||||||++ ..+++||| ||||||||++|||+|++ .+.|+|||.+
T Consensus 32 ~~~~~~G~~~t~~~r~~~~-~~~g~~~spwHdIpl~-~~~~~vn~------VVEIPrgs~~KyEidk~~~~npi~qD~~~ 103 (267)
T PLN02707 32 YAVEEEGEAETLDYRVFFS-DGSGKKVSPWHDIPLH-AGDGTFNF------VVEIPKETSAKMEVATDEPFTPIKQDTKK 103 (267)
T ss_pred eeEEeecCCCCcceEEEEE-CCCCCccCchhcCCCC-CCCCEEEE------EEEECCCCceeEEECccCCCCCEEEeeec
Confidence 4558899999999999964 3468889999999999 55799999 99999999999999976 5689999988
Q ss_pred ccCCCCcC----ccccccccc-------------CCCCCcceEEEecCcccCCcceEEEEEeeeEEeEeCCCCceEEEEE
Q 027854 87 YSSVVYPH----NYGFIPRTI-------------CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV 149 (218)
Q Consensus 87 ~~~~~yP~----NYGfIPqT~-------------~gDgDPLDVlvL~~~p~~~G~vv~vrviG~L~miD~gE~D~KIIaV 149 (218)
...+.||+ ||||||||| +|||||||||||++.|+.||++++|||||+|+|+|+||+|||||||
T Consensus 104 g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV 183 (267)
T PLN02707 104 GKLRDYPYNINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAI 183 (267)
T ss_pred CceEECCCcCccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEE
Confidence 77777776 999999998 4899999999999999999999999999999999999999999999
Q ss_pred ecCCccccCCCCCCCCChhH---HHHHHHHHHHhhccCCCcceeehhh-hhccccceeecc
Q 027854 150 CADDPEFRHYKDIKELPPHR---LAEIRRFFEDCIHSFVFIILSYSLI-DYLSQHSAVSTT 206 (218)
Q Consensus 150 ~~~Dp~~~~i~di~Dl~~~~---l~~i~~fF~~YK~le~~~~~~~~~~-~y~~~~~a~~~~ 206 (218)
+++||+|++|+||+||+++. +++|+|||++||.++||++|.|++. ++.++..|+..-
T Consensus 184 ~~~Dp~~~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI 244 (267)
T PLN02707 184 SADDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVI 244 (267)
T ss_pred ECCCCcccccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHH
Confidence 99999999999999998665 8999999999999999999999876 888888887653
No 4
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=3.3e-60 Score=401.19 Aligned_cols=159 Identities=40% Similarity=0.690 Sum_probs=148.8
Q ss_pred cCCCCCCCCCCCceeeccCCCceEEEECCCCC-ceEEEecCCCCeEEeEecccCCCCcCcccccccccCCCCCcceEEEe
Q 027854 37 PWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVL 115 (218)
Q Consensus 37 pwHdipl~~~~p~~~n~~~~~~~VIEIPrgs~-~KyEidk~~g~i~~DR~l~~~~~yP~NYGfIPqT~~gDgDPLDVlvL 115 (218)
+||++|.+.+.|+.||| ||||||||+ +|||+|+++|.+++||++++++.||||||||||||+|||||||||||
T Consensus 2 ~~~~l~~~~~~~~~v~v------vvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl 75 (176)
T PRK01250 2 SLNKIPAGKDLPEDINV------IIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVV 75 (176)
T ss_pred ChhhCCCCCCCCCEEEE------EEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEEe
Confidence 69999999998999999 999999999 89999999999999999999999999999999999999999999999
Q ss_pred cCcccCCcceEEEEEeeeEEeEeCCCCceEEEEEecC--CccccCCCCCCCCChhHHHHHHHHHHHhhccC-CCcceeeh
Q 027854 116 MQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDCIHSF-VFIILSYS 192 (218)
Q Consensus 116 ~~~p~~~G~vv~vrviG~L~miD~gE~D~KIIaV~~~--Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-~~~~~~~~ 192 (218)
++.|+.||++++|||||+|+|+|+||+|||||||+++ ||+|++|+|++|||++++++|+|||++||.++ +|.++-.+
T Consensus 76 ~~~~~~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le~gk~~~v~g 155 (176)
T PRK01250 76 TPYPLVPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLEKGKWVKVEG 155 (176)
T ss_pred cCCCCCCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCCCCCCEEecC
Confidence 9999999999999999999999999999999999998 69999999999999999999999999999998 77655544
Q ss_pred hhhhccccceee
Q 027854 193 LIDYLSQHSAVS 204 (218)
Q Consensus 193 ~~~y~~~~~a~~ 204 (218)
+.++.+|..
T Consensus 156 ---~~~~~~A~~ 164 (176)
T PRK01250 156 ---WGGAEEAKA 164 (176)
T ss_pred ---ccCHHHHHH
Confidence 445555543
No 5
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=4e-60 Score=418.32 Aligned_cols=195 Identities=33% Similarity=0.502 Sum_probs=176.0
Q ss_pred ccCCCCCCCCcceeeeecccCCCcccCcCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecC-----------CC
Q 027854 10 SNNSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKA-----------SG 78 (218)
Q Consensus 10 ~~~~~g~~~~~~~r~~~~~~~~~~~~spwHdipl~~~~p~~~n~~~~~~~VIEIPrgs~~KyEidk~-----------~g 78 (218)
+..+.|+.++++||+++. ...+..+|||||||+.++...++|| |+|||||+++|||++++ +|
T Consensus 4 ~t~e~g~~~s~~~rvy~~-~~~~~~iS~fhdipl~a~~~~~~nm------vvEiPrwtnak~EIs~k~~~~pikqD~KkG 76 (279)
T KOG1626|consen 4 ETVETGKKYSLDYRVYFP-KLNGRIISPFHDIPLAAHPWHDLNM------VVEIPRWTNAKMEISKKEPFNPIKQDKKKG 76 (279)
T ss_pred eeeeccccCCccceeeec-CCCCccccccccCccccCccccEee------cccccceeeeEEEEeccCCCCcceeeccCC
Confidence 456889999999999963 3456699999999999997789999 99999999999999864 46
Q ss_pred CeEEeEecccCCCCcCcccccccccC------------CCCCcceEEEecCcccCCcceEEEEEeeeEEeEeCCCCceEE
Q 027854 79 LIKVDRVLYSSVVYPHNYGFIPRTIC------------EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKI 146 (218)
Q Consensus 79 ~i~~DR~l~~~~~yP~NYGfIPqT~~------------gDgDPLDVlvL~~~p~~~G~vv~vrviG~L~miD~gE~D~KI 146 (218)
.+|++|.+|++..||||||||||||+ |||||||||+||+++..+|++++||+||+|+||||||+||||
T Consensus 77 klR~v~n~fp~~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKi 156 (279)
T KOG1626|consen 77 KLRFVRNLFPYKGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKI 156 (279)
T ss_pred ceEEEEecccccccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceE
Confidence 78888999999999999999999997 588999999999999999999999999999999999999999
Q ss_pred EEEecCCccccCCCCCCCC---ChhHHHHHHHHHHHhhccCCCcceeehhh-hhccccceeecccccce
Q 027854 147 IAVCADDPEFRHYKDIKEL---PPHRLAEIRRFFEDCIHSFVFIILSYSLI-DYLSQHSAVSTTPNMHK 211 (218)
Q Consensus 147 IaV~~~Dp~~~~i~di~Dl---~~~~l~~i~~fF~~YK~le~~~~~~~~~~-~y~~~~~a~~~~~~~~~ 211 (218)
|||+++||.++.++||+|+ +|++|+++++|||.||.+.||+.|+|++. +|+++.+|++.--.-|.
T Consensus 157 IAIdvnDP~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d 225 (279)
T KOG1626|consen 157 IAIDVNDPLASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHD 225 (279)
T ss_pred EEEECCCcchhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHHH
Confidence 9999999966666666665 79999999999999999999999999998 99999999987654443
No 6
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=5.1e-58 Score=381.07 Aligned_cols=143 Identities=49% Similarity=0.847 Sum_probs=137.4
Q ss_pred EEEECCCCCceEEEecCCCCeEEeEecccCCCCcCcccccccccCCCCCcceEEEecCcccCCcceEEEEEeeeEEeEeC
Q 027854 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 139 (218)
Q Consensus 60 VIEIPrgs~~KyEidk~~g~i~~DR~l~~~~~yP~NYGfIPqT~~gDgDPLDVlvL~~~p~~~G~vv~vrviG~L~miD~ 139 (218)
||||||||++|||+|+++|.|++||.+++++.||+|||||||||++||||||||||++.|++||++++||+||+|+|+|+
T Consensus 6 vIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l~m~D~ 85 (155)
T cd00412 6 VIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVLKMIDE 85 (155)
T ss_pred EEEECCCCceeEEEccCCCceeeccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCccccCCCCCCCCChhHHHHHHHHHHHhhccCCCcceeehhhhhccccceee
Q 027854 140 GEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVS 204 (218)
Q Consensus 140 gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~~~~~~~~~~~y~~~~~a~~ 204 (218)
||+|||||||+.+||+|++|+|++|||++++++|+|||++||.+++++.+++. .+.++..|.+
T Consensus 86 ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le~~k~~~~~--g~~~~~~A~~ 148 (155)
T cd00412 86 GETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEHYKDLEGKKEVKVA--GWKDKEEALK 148 (155)
T ss_pred CCccceEEEeeCCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCCceEEC--cCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999998877765 6777777654
No 7
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=6.7e-57 Score=383.24 Aligned_cols=148 Identities=40% Similarity=0.627 Sum_probs=140.1
Q ss_pred ceeeccCCCceEEEECCCCCceEEEecCCCCeEEeEecccCCCCcCcccccccccCCCCCcceEEEecCcccCCcceEEE
Q 027854 49 AVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRC 128 (218)
Q Consensus 49 ~~~n~~~~~~~VIEIPrgs~~KyEidk~~g~i~~DR~l~~~~~yP~NYGfIPqT~~gDgDPLDVlvL~~~p~~~G~vv~v 128 (218)
..||+ ||||||||++|||+|+++|.|++||++++++.||+|||||||||+|||||||||||++.|+.||++++|
T Consensus 3 ~~vnv------vIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~ 76 (184)
T PRK02230 3 KIIEV------TIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNA 76 (184)
T ss_pred cEEEE------EEEECCCCCeeEEEecCCCCEEEEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEE
Confidence 34677 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeEEeEeCCCCceEEEEEecCCccccCCCCCCCCChhHHHHHHHHHHHhhccCCCcceeehhhhhccccceee
Q 027854 129 RAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVS 204 (218)
Q Consensus 129 rviG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~~~~~~~~~~~y~~~~~a~~ 204 (218)
||||+|+|+|+||.|||||||+.+||+|++|++++|||++++++|+|||++||.+++|+++++ +.+.++..|..
T Consensus 77 r~IGvl~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~legk~~~~v--~g~~~~~~A~~ 150 (184)
T PRK02230 77 RIIGAMKMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNYKNWKRKGITKV--KGFEDEKWALK 150 (184)
T ss_pred EEEEEEEeccCCCcCcEEEEEECCCCChhhcCChHHCCHHHHHHHHHHHHHhcCCCCCCeEEe--CCccCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998764 45777766654
No 8
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=4.5e-55 Score=363.27 Aligned_cols=142 Identities=50% Similarity=0.839 Sum_probs=125.1
Q ss_pred eEEEECCCCCceEEEecCCCCeEEeEecccCCCCcCcccccccccCCCCCcceEEEecCcccCCcceEEEEEeeeEEeEe
Q 027854 59 QVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMID 138 (218)
Q Consensus 59 ~VIEIPrgs~~KyEidk~~g~i~~DR~l~~~~~yP~NYGfIPqT~~gDgDPLDVlvL~~~p~~~G~vv~vrviG~L~miD 138 (218)
+||||||||++|||+|+++|.+++||++++++.||+|||||||||+||||||||+|||+.|+.||++++||+||+|+|+|
T Consensus 2 ~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~D 81 (156)
T PF00719_consen 2 VVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMID 81 (156)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEEE
T ss_pred EEEEECCCCCeeEEECCCCCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEee
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEecCCccccCCCCCCCCChhHHHHHHHHHHHhhccC-CCcceeehhhhhcccccee
Q 027854 139 QGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSF-VFIILSYSLIDYLSQHSAV 203 (218)
Q Consensus 139 ~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-~~~~~~~~~~~y~~~~~a~ 203 (218)
+||+|||||||+.+||+|++|++++|++++++++|++||++||.++ ++.+ ..+.+.++..|.
T Consensus 82 ~ge~D~KiiaV~~~dp~~~~i~dl~dl~~~~~~~i~~fF~~YK~l~~~k~~---~~~~~~~~~~A~ 144 (156)
T PF00719_consen 82 DGERDDKIIAVPVDDPRYDDIKDLEDLPPHLLDEIEHFFRNYKDLEENKWV---EVGGWEDAEEAL 144 (156)
T ss_dssp TTEEEEEEEEEETTCGGGTTHHSGGGSSHHHHHHHHHHHHHTTTTSTTEEE---EEEEEEEHHHHH
T ss_pred CCCCceEEEEeccCCcccCCcCcHHHhChhHHHHHHHHHHHhcCcCCCCeE---EeCCCcCHHHHH
Confidence 9999999999999999999999999999999999999999999996 3322 223444554444
No 9
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=9.5e-53 Score=354.36 Aligned_cols=159 Identities=44% Similarity=0.735 Sum_probs=147.7
Q ss_pred CcCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEEeEecccCCCCcCcccccccccCCCCCcceEEEe
Q 027854 36 HPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVL 115 (218)
Q Consensus 36 spwHdipl~~~~p~~~n~~~~~~~VIEIPrgs~~KyEidk~~g~i~~DR~l~~~~~yP~NYGfIPqT~~gDgDPLDVlvL 115 (218)
|+||+||++++. ..+|| +||||+||++|||+|++++.+.+||.+++++.||+|||||||||++|||||||||+
T Consensus 1 ~~~~~~~~~~~~-~~i~v------viEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi 73 (171)
T COG0221 1 MDLHKIPAGPDD-EDINV------VIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVI 73 (171)
T ss_pred CCccccCCCCCc-ceEEE------EEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEE
Confidence 589999999987 79999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCcceEEEEEeeeEEeEeCCCCceEEEEEecCCccccCCCCCCCCChhHHHHHHHHHHHhhccCCCcceeehhhh
Q 027854 116 MQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLID 195 (218)
Q Consensus 116 ~~~p~~~G~vv~vrviG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~~~~~~~~~~~ 195 (218)
+++|+.||++++||+||+|+|+|+||.|||||||+..||+|++|++++|+|.+++++|+|||.+||.+|..+..+ ...
T Consensus 74 ~~~p~~pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~k~~~--~~g 151 (171)
T COG0221 74 GEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVK--VEG 151 (171)
T ss_pred cCcCCCceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCCcEEE--ecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863332 224
Q ss_pred hcccccee
Q 027854 196 YLSQHSAV 203 (218)
Q Consensus 196 y~~~~~a~ 203 (218)
|.++..|.
T Consensus 152 w~~~~~A~ 159 (171)
T COG0221 152 WEDAEEAK 159 (171)
T ss_pred ccCHHHHH
Confidence 45555444
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=90.10 E-value=0.31 Score=44.56 Aligned_cols=55 Identities=33% Similarity=0.372 Sum_probs=48.2
Q ss_pred CCCCCCCcceeeeecccCCCcccCcCCCCCCCCCCCceeeccCCCceEEEEC-CCCCceEEE
Q 027854 13 SGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIG-KGGKVKYEL 73 (218)
Q Consensus 13 ~~g~~~~~~~r~~~~~~~~~~~~spwHdipl~~~~p~~~n~~~~~~~VIEIP-rgs~~KyEi 73 (218)
.+-....++-|++++|.+....+++||++....+.|-.+|+ .+||. +++.++++.
T Consensus 16 ~rvy~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtna------k~EIs~k~~~~pikq 71 (279)
T KOG1626|consen 16 YRVYFPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNA------KMEISKKEPFNPIKQ 71 (279)
T ss_pred ceeeecCCCCccccccccCccccCccccEeecccccceeee------EEEEeccCCCCccee
Confidence 33445788899999999999999999999999999999999 99999 888887764
No 11
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=45.33 E-value=23 Score=25.77 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=15.6
Q ss_pred eEEEecCcccCCcceEEEEEee
Q 027854 111 DVLVLMQEPVLPGSFLRCRAIG 132 (218)
Q Consensus 111 DVlvL~~~p~~~G~vv~vrviG 132 (218)
..||++++|+.+|+.+++|+.-
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEe
Confidence 4688999999999999999853
No 12
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=40.37 E-value=24 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=21.0
Q ss_pred ccccccccCCCCCcceEEEecCcccCCcceEEEEEee
Q 027854 96 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIG 132 (218)
Q Consensus 96 YGfIPqT~~gDgDPLDVlvL~~~p~~~G~vv~vrviG 132 (218)
=||||.+--.+. ..+.+|+.+.|+++.
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~ 56 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEK 56 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEE
Confidence 488887754443 468999999999986
No 13
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=32.32 E-value=21 Score=32.50 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.0
Q ss_pred ccccCCCCCCCCChhHHHHHHHHHHHh
Q 027854 154 PEFRHYKDIKELPPHRLAEIRRFFEDC 180 (218)
Q Consensus 154 p~~~~i~di~Dl~~~~l~~i~~fF~~Y 180 (218)
|-|--++|+++||.-+-+.+++||+.-
T Consensus 237 pYy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 237 PYYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred CeEEEecChhHhHHHHHHHHHHHHHHH
Confidence 456667899999999999999999853
No 14
>smart00588 NEUZ domain in neuralized proteins.
Probab=32.19 E-value=61 Score=25.96 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=30.2
Q ss_pred CcceEEEecCcccCCcceEEEEEeeeEEeEeCCCCceEEEEEecCCccc
Q 027854 108 DPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEF 156 (218)
Q Consensus 108 DPLDVlvL~~~p~~~G~vv~vrviG~L~miD~gE~D~KIIaV~~~Dp~~ 156 (218)
+.=+.+|++++|+.+|+.+.+|+.-.-..- .--=-+++-..||..
T Consensus 28 ~f~~givFS~rPl~~~E~~~v~i~~~~~~w----~G~l~~G~Ts~dP~~ 72 (123)
T smart00588 28 DFCNALVFSARPLRINELFEVKIEKVVRKW----SGALRFGVTTCDPAT 72 (123)
T ss_pred CcCceEEecCCCCcCCCEEEEEEEEecCCc----cCceEEEEecCCccc
Confidence 345789999999999999999987432111 001235677778853
No 15
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=32.03 E-value=22 Score=25.10 Aligned_cols=14 Identities=21% Similarity=0.627 Sum_probs=10.9
Q ss_pred CcccCcCCCCCCCC
Q 027854 32 SVAAHPWHDLEIGP 45 (218)
Q Consensus 32 ~~~~spwHdipl~~ 45 (218)
-...|||.|+|+-+
T Consensus 10 a~~~SPWk~~pl~~ 23 (57)
T PF08437_consen 10 AYKNSPWKDIPLLK 23 (57)
T ss_pred HHHcCCCCCCCCcC
Confidence 34679999999953
No 16
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=26.75 E-value=48 Score=27.99 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=16.7
Q ss_pred EEEECCCCCceEEEecCCCCeEEeEecccCCCCcCcc
Q 027854 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNY 96 (218)
Q Consensus 60 VIEIPrgs~~KyEidk~~g~i~~DR~l~~~~~yP~NY 96 (218)
|+=||+||+..|.-. +..++-...||+||
T Consensus 122 vi~iPkGs~I~fst~--------~~a~~~Yv~yPa~W 150 (152)
T PF06249_consen 122 VIFIPKGSTITFSTP--------DYARFFYVTYPANW 150 (152)
T ss_dssp EEEE-TT-EEEEEEE--------EEEEEEEEEESTT-
T ss_pred EEEECCCCEEEEecC--------CCEEEEEEECCCcc
Confidence 566899998888753 22233345789886
No 17
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=26.50 E-value=39 Score=29.54 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=28.7
Q ss_pred eEEEEEecCCccccCCCCCCCCChhHHHHHHHHHHHhhc
Q 027854 144 DKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIH 182 (218)
Q Consensus 144 ~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~ 182 (218)
-+.||...-|. ...+.|++||.+..++.+.+|...||.
T Consensus 108 SR~La~~s~d~-~d~~ddlsdL~a~e~eal~eWE~~fk~ 145 (183)
T KOG1110|consen 108 SRGLAKMSFDL-SDETDDLSDLTAEELEALNEWETKFKA 145 (183)
T ss_pred HHHHHhcccch-hhccccccccCHHHHHHHHHHHHHHhh
Confidence 34455444443 566789999999999999999999875
No 18
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=24.58 E-value=72 Score=22.19 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=21.3
Q ss_pred ccccccccCCCCCcceEEEecCcccCCcceEEEEEeee
Q 027854 96 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 133 (218)
Q Consensus 96 YGfIPqT~~gDgDPLDVlvL~~~p~~~G~vv~vrviG~ 133 (218)
=||+|.+.-.+. ... ...+..|+.++||++++
T Consensus 25 ~g~v~~~~l~~~-~~~-----~~~~~~G~~i~~kVi~i 56 (66)
T cd05695 25 TGTVDFLHLDPE-KSS-----KSTYKEGQKVRARILYV 56 (66)
T ss_pred eEEEEHHHcCCc-cCc-----ccCcCCCCEEEEEEEEE
Confidence 477777765321 111 44589999999999973
No 19
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.32 E-value=1.6e+02 Score=29.06 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=39.1
Q ss_pred CcceEEEecCcccCCcceEEEEEeeeEEeEeCCCCceEEEEEecCCccccCCCCCCCCChhHHHHHHHHHH
Q 027854 108 DPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFE 178 (218)
Q Consensus 108 DPLDVlvL~~~p~~~G~vv~vrviG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~ 178 (218)
++-||+|||. -..+|++=|+|..- .-|+|-++.+|--=+...++. ++++..||+
T Consensus 3 eeyDvivlGT------gl~ecilS~~Ls~~-----gkkVLhiDrN~yYG~~saslt------l~ql~~~f~ 56 (440)
T KOG1439|consen 3 EEYDVIVLGT------GLTECILSGALSVD-----GKKVLHIDRNDYYGGESASLT------LEQLYKKFK 56 (440)
T ss_pred CceeEEEEcC------Cchhheeeeeeeec-----CcEEEEEeCCCCCCcccccee------HHHHHHHhc
Confidence 4589999986 35678888888862 357999998875334444554 788888887
No 20
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.85 E-value=93 Score=21.44 Aligned_cols=14 Identities=7% Similarity=0.164 Sum_probs=12.3
Q ss_pred ccCCcceEEEEEee
Q 027854 119 PVLPGSFLRCRAIG 132 (218)
Q Consensus 119 p~~~G~vv~vrviG 132 (218)
...+|+.++|+++.
T Consensus 47 ~~~~Gd~v~~~V~~ 60 (73)
T cd05706 47 KFKKNDIVRACVLS 60 (73)
T ss_pred ccCCCCEEEEEEEE
Confidence 47889999999988
No 21
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=21.52 E-value=98 Score=24.14 Aligned_cols=26 Identities=23% Similarity=0.614 Sum_probs=12.5
Q ss_pred EEEEecCCccccCCCCCCCCChhHHHHHHH
Q 027854 146 IIAVCADDPEFRHYKDIKELPPHRLAEIRR 175 (218)
Q Consensus 146 IIaV~~~Dp~~~~i~di~Dl~~~~l~~i~~ 175 (218)
+|+||.+ .+|.++.||.+.-+..+++
T Consensus 37 ~LviPk~----~~i~sl~~L~~~~~~lL~~ 62 (116)
T PF11969_consen 37 LLVIPKD----PHIRSLRDLTPEHLPLLER 62 (116)
T ss_dssp EEEEESS----SS-SSGGG--GGGHHHHHH
T ss_pred EEEEeec----CCCCChHHcCHHHHHHHHH
Confidence 4555543 4788888887544333333
No 22
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=21.06 E-value=83 Score=27.21 Aligned_cols=30 Identities=33% Similarity=0.686 Sum_probs=19.6
Q ss_pred EEEECCCCCceEEEecCCCCeEEeEecccCCCCcCccc
Q 027854 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYG 97 (218)
Q Consensus 60 VIEIPrgs~~KyEidk~~g~i~~DR~l~~~~~yP~NYG 97 (218)
||=|||||..++-...+ -|.+| ..||+|+-
T Consensus 145 vifiPKgssIefst~ge------a~fly--vtyPanWq 174 (176)
T COG4766 145 VIFIPKGSSIEFSTTGE------AKFLY--VTYPANWQ 174 (176)
T ss_pred EEEecCCCeEEEeccce------EEEEE--EEcccccc
Confidence 45599999887764322 13333 57999873
No 23
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=20.83 E-value=34 Score=25.28 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=32.7
Q ss_pred CceEEEEEecCCccccCCCCCCCCChhHHHHHHHHHHHhhccCCCcceeehhh-hhccccceeecccccceeeee
Q 027854 142 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLI-DYLSQHSAVSTTPNMHKLHCI 215 (218)
Q Consensus 142 ~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~~~~~~~~~~-~y~~~~~a~~~~~~~~~~~~~ 215 (218)
..+=++.|+. .++.++.|+++....++....+.-...-......-+.. ...+-.+|-|+.|.+| +|-|
T Consensus 25 ~~gh~LVipk-----~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~HlH-~Hvi 93 (98)
T PF01230_consen 25 SPGHLLVIPK-----RHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPHLH-FHVI 93 (98)
T ss_dssp STTEEEEEES-----STGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS-E-EEEE
T ss_pred CCeEEEEEec-----ccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCEEE-EEEe
Confidence 3444555554 35678888887555555444443222211111111111 2334456778888877 4443
No 24
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=20.82 E-value=28 Score=23.89 Aligned_cols=10 Identities=50% Similarity=0.763 Sum_probs=9.3
Q ss_pred Cccccccccc
Q 027854 94 HNYGFIPRTI 103 (218)
Q Consensus 94 ~NYGfIPqT~ 103 (218)
|||||=..||
T Consensus 24 FNYGf~E~tW 33 (45)
T PF05182_consen 24 FNYGFNEETW 33 (45)
T ss_pred cCCCCCHHHH
Confidence 8999999998
No 25
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=20.48 E-value=2.2e+02 Score=24.14 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=24.9
Q ss_pred cccCCcceEEEEEeeeEEeEeCCCCceEEEEEecCCccccCC
Q 027854 118 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHY 159 (218)
Q Consensus 118 ~p~~~G~vv~vrviG~L~miD~gE~D~KIIaV~~~Dp~~~~i 159 (218)
..+..|+.+++|++|+- .|++ +-++++ ...+|-...+
T Consensus 135 ~~i~~g~~VR~rV~~v~--~~~~--~~~~i~-T~~~~~LG~~ 171 (176)
T PTZ00162 135 IQIKPNTEVRLRLQGVR--YDAS--NLFAIA-TINSDYLGPI 171 (176)
T ss_pred EEECCCCEEEEEEEEEE--ecCC--CcEEEE-EecCCCcCcc
Confidence 45789999999999984 3444 356666 5555544433
Done!