RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027854
(218 letters)
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase.
Length = 188
Score = 332 bits (854), Expect = e-118
Identities = 133/153 (86%), Positives = 139/153 (90%), Gaps = 6/153 (3%)
Query: 27 SMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVL 86
SMS RSVAAHPWHDLEIGPGAPA+ NC VVEI KG KVKYELDK +GLIKVDRVL
Sbjct: 1 SMSRRSVAAHPWHDLEIGPGAPAIFNC------VVEITKGSKVKYELDKKTGLIKVDRVL 54
Query: 87 YSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKI 146
YSSVVYPHNYGFIPRT+CED+DP+DVLVLMQEPVLPG FLR RAIGLMPMIDQGEKDDKI
Sbjct: 55 YSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKI 114
Query: 147 IAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 179
IAVCADDPE+RHY DIKELPPHRLAEIRRFFED
Sbjct: 115 IAVCADDPEYRHYTDIKELPPHRLAEIRRFFED 147
>gnl|CDD|238239 cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes
hydrolyze inorganic pyrophosphate (PPi) to two molecules
of orthophosphates (Pi). The reaction requires bivalent
cations. The enzymes in general exist as homooligomers.
Length = 155
Score = 219 bits (560), Expect = 1e-73
Identities = 69/120 (57%), Positives = 90/120 (75%)
Query: 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEP 119
V+EI KG KYE+DK +G IKVDR LYSS+ YP NYGFIP+T+ +D DP+DVLV+ +EP
Sbjct: 6 VIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEP 65
Query: 120 VLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 179
+ PGS +R R +G++ MID+GE D K+IAV DDP + H DI ++PPH L EI+ FFE
Sbjct: 66 LFPGSVIRVRPLGVLKMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEH 125
>gnl|CDD|189686 pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.
Length = 156
Score = 208 bits (533), Expect = 2e-69
Identities = 74/120 (61%), Positives = 91/120 (75%)
Query: 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEP 119
V+EI KG +VKYE+DK SGL+ VDRVLY+S+ YP NYGFIP+T+ D DP+DVLVL EP
Sbjct: 3 VIEIPKGSRVKYEIDKESGLLPVDRVLYTSMGYPFNYGFIPQTLEGDGDPLDVLVLGPEP 62
Query: 120 VLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 179
+ PGS +R R IG++ MID+GE DDKIIAV DDP + KDI++LPP L EI FFE
Sbjct: 63 LFPGSVVRVRPIGVLAMIDEGETDDKIIAVPVDDPRYDDIKDIEDLPPGLLDEIEHFFEH 122
>gnl|CDD|223299 COG0221, Ppa, Inorganic pyrophosphatase [Energy production and
conversion].
Length = 171
Score = 178 bits (453), Expect = 5e-57
Identities = 69/143 (48%), Positives = 92/143 (64%), Gaps = 7/143 (4%)
Query: 36 HPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHN 95
H + GP N V+EI KG +KYE+DK +G + VDR L + + YP N
Sbjct: 1 MDLHKIPAGP-DDEDINV------VIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVN 53
Query: 96 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE 155
YGFIP T+ +D DP+DVLV+ +EP+ PG ++ R IG++ MID+GEKDDK+IAV DP
Sbjct: 54 YGFIPNTLSDDGDPLDVLVIGEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPR 113
Query: 156 FRHYKDIKELPPHRLAEIRRFFE 178
+ H KDI +LP H L EI+ FFE
Sbjct: 114 YEHIKDISDLPEHLLDEIQHFFE 136
>gnl|CDD|179388 PRK02230, PRK02230, inorganic pyrophosphatase; Provisional.
Length = 184
Score = 154 bits (391), Expect = 1e-47
Identities = 57/118 (48%), Positives = 69/118 (58%)
Query: 61 VEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 120
+EI KG +KYE D+ + I VDR+L VYP NYGFI + D D +DVLV +
Sbjct: 9 IEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKF 68
Query: 121 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFE 178
LPG+ L R IG M MID GE D K+IAV DD H +K+LP H L EI FF
Sbjct: 69 LPGTVLNARIIGAMKMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFS 126
>gnl|CDD|179262 PRK01250, PRK01250, inorganic pyrophosphatase; Provisional.
Length = 176
Score = 152 bits (387), Expect = 4e-47
Identities = 59/122 (48%), Positives = 83/122 (68%), Gaps = 3/122 (2%)
Query: 60 VVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQE 118
++EI +KYE+DK SG + VDR LY+++ YP NYGFIP T+ D DP+DVLV+
Sbjct: 19 IIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPY 78
Query: 119 PVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRF 176
P++PGS +RCR +G++ M D+ +D KIIAV D PE+ H KD+ +LP A+I+ F
Sbjct: 79 PLVPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHF 138
Query: 177 FE 178
FE
Sbjct: 139 FE 140
>gnl|CDD|179080 PRK00642, PRK00642, inorganic pyrophosphatase; Provisional.
Length = 205
Score = 137 bits (347), Expect = 9e-41
Identities = 70/171 (40%), Positives = 86/171 (50%), Gaps = 26/171 (15%)
Query: 26 SSMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRV 85
S S A HPWH L +GP AP C +EI VKYELDKA+G +KVDR
Sbjct: 1 MSKFPLSRA-HPWHGLSLGPDAPESVCC------YIEITPFDTVKYELDKATGYLKVDRP 53
Query: 86 LYSSVVYPHNYGFIPRTICE------------------DSDPMDVLVLMQEPVLPGS-FL 126
S P YGFIPRT C D DP+D+ VL ++ + G+ L
Sbjct: 54 QKFSNFCPALYGFIPRTYCGDLSGKLSGEQSGREDIKGDGDPLDICVLTEKNITHGNILL 113
Query: 127 RCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 177
+ R IG + MID GE DDKIIAV DD + KDI E P L ++ +F
Sbjct: 114 QARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYF 164
>gnl|CDD|178309 PLN02707, PLN02707, Soluble inorganic pyrophosphatase.
Length = 267
Score = 75.2 bits (185), Expect = 2e-16
Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 36/190 (18%)
Query: 15 GPPVALNERI-LSSMSHRSVAAHPWHD--LEIGPGAPAVCNCCKSLRQVVEIGKGGKVKY 71
G L+ R+ S S + V+ PWHD L G G + VVEI K K
Sbjct: 38 GEAETLDYRVFFSDGSGKKVS--PWHDIPLHAGDG---------TFNFVVEIPKETSAKM 86
Query: 72 EL--DKASGLIKVDRVLYSSVVYPH----NYGFIPRT-------------ICEDSDPMDV 112
E+ D+ IK D YP+ NYG +P+T D+DP+DV
Sbjct: 87 EVATDEPFTPIKQDTKKGKLRDYPYNINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDV 146
Query: 113 LVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPH---R 169
+ + + G L+ + +G++ MID+GE D K++A+ ADDP+ D+ ++ H
Sbjct: 147 VEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASLVNDVDDVEKHFPGT 206
Query: 170 LAEIRRFFED 179
L IR +F D
Sbjct: 207 LTAIRDWFRD 216
>gnl|CDD|153378 cd07366, 3MGA_Dioxygenase, Subunit B of the Class III Extradiol
ring-cleavage dioxygenase, 3-O-Methylgallate
Dioxygenase, which catalyzes the oxidization and
subsequent ring-opening of 3-O-Methylgallate.
3-O-Methylgallate Dioxygenase catalyzes the oxidization
and subsequent ring-opening of 3-O-Methylgallate (3MGA)
between carbons 2 and 3. 3-O-Methylgallate Dioxygenase
is a key enzyme in the syringate degradation pathway, in
which the syringate is first converted to
3-O-Methylgallate by O-demethylase. This enzyme is a
member of the class III extradiol dioxygenase family, a
group of enzymes which uses a non-heme Fe(II) to cleave
aromatic rings between a hydroxylated carbon and an
adjacent non-hydroxylated carbon. LigAB-like enzymes are
usually composed of two subunits, designated A and B,
which form a tetramer composed of two copies of each
subunit. This model represents the catalytic subunit, B.
Length = 328
Score = 29.3 bits (66), Expect = 1.4
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 90 VVYPHNYGFIPRTICEDSDPMDVLVLMQ---EPVLPGSFLRCRAIG 132
V PH +GFI R I D V VL+ P P + RC G
Sbjct: 178 VGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSAR-RCFEFG 222
>gnl|CDD|192725 pfam11228, DUF3027, Protein of unknown function (DUF3027). This
family of proteins with unknown function appears to be
restricted to Actinobacteria.
Length = 194
Score = 28.8 bits (65), Expect = 1.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 22 ERILSSMSHRSVAAHPWHDLEIGPG------APAVCNCC 54
R+LS R AA W++ + GP APA C+ C
Sbjct: 114 RRVLSREG-REEAAKRWYEGDYGPKSEIAKAAPASCSTC 151
>gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.
Length = 326
Score = 27.9 bits (63), Expect = 3.6
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 136 MIDQGEKDDKIIAVCAD--DPEFRHY---KDIKELPPHRL 170
+++ GE+D K+IA A +P+ R Y K+++ L +L
Sbjct: 252 LVESGERDVKVIAKAAGIGNPK-RIYFLRKEVQGLSSQQL 290
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 28.3 bits (64), Expect = 3.7
Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 23/74 (31%)
Query: 54 CKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYG--FIPRTICEDSDPMD 111
+R+ +EIGK R+L V F+ TI D P
Sbjct: 363 RDRIRRYIEIGKSE---------------GRLLLGGEVLELAAEGYFVQPTIFADVPPDH 407
Query: 112 VLVLMQE----PVL 121
L QE PVL
Sbjct: 408 --RLAQEEIFGPVL 419
>gnl|CDD|236404 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
Validated.
Length = 1165
Score = 28.3 bits (64), Expect = 4.1
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 147 IAVCADDPEFRHYKDIKELPP-----HR--LAEIRRFFED 179
I V D+PE Y + L P HR L ++R +
Sbjct: 568 IVVVTDEPE--KYDGVARLAPGVTVHHRDELDAVQRELRE 605
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 28.0 bits (62), Expect = 4.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 157 RHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQ 199
R+YK +K L PH+ R + +F + L YSL D L +
Sbjct: 287 RNYKKLKTLVPHQTPMPERDAVERARNFKEVNLGYSLEDALQE 329
>gnl|CDD|184002 PRK13363, PRK13363, protocatechuate 4,5-dioxygenase subunit beta;
Provisional.
Length = 335
Score = 27.4 bits (61), Expect = 6.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 93 PHNYGFIPRTICEDSDPMDVLVLMQ---EPVLPGSFLRCRAIG 132
H +GF+ R + +D+ V VL+ P P + RC A+G
Sbjct: 185 GHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQP-TPRRCIALG 226
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.432
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,340,799
Number of extensions: 1079741
Number of successful extensions: 907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 22
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)