RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027854
(218 letters)
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 173
Score = 162 bits (411), Expect = 2e-51
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 36 HPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHN 95
+P+HDLE GP P V ++EI KG + KYELDK +GL+K+DRVLYS YP +
Sbjct: 1 NPFHDLEPGPDVPEVVYA------IIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVD 54
Query: 96 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE 155
YG IPRT ED DP D++V+M+EPV P + + R IGL MID G+KD K++AV +DP
Sbjct: 55 YGIIPRTWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPY 114
Query: 156 FRHYKDIKELPPHRLAEIRRFFED 179
F+ +KDI ++P L EI FF+
Sbjct: 115 FKDWKDIDDVPKAFLDEIAHFFKR 138
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 174
Score = 152 bits (386), Expect = 1e-47
Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 39 HDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGF 98
L +G AP V + V+E+ +G KYE D G IK+DRVL + YP +YGF
Sbjct: 4 KSLPVGDKAPEVVHM------VIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGF 57
Query: 99 IPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRH 158
IP T+ ED DP+D LVL P+LPG + R +GL+ M D+ D K+I V A+D H
Sbjct: 58 IPSTLAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDH 117
Query: 159 YKDIKELPPHRLAEIRRFFED 179
+DI ++P EI+ FFE
Sbjct: 118 IQDIGDVPEGVKQEIQHFFET 138
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 175
Score = 145 bits (366), Expect = 1e-44
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 39 HDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYG 97
++ G P V+EI +KYE+DK SG + VDR + +++ YP NYG
Sbjct: 3 LNVPAGKDLPEDIYV------VIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYG 56
Query: 98 FIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD--PE 155
+I T+ D DP+DVLV P+ PGS RCR +G++ M D+ +D K++AV E
Sbjct: 57 YINHTLSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKE 116
Query: 156 FRHYKDIKELPPHRLAEIRRFFED 179
+ H KD+ +LP A+I FFE
Sbjct: 117 YDHIKDVNDLPELLKAQIAHFFEH 140
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 284
Score = 146 bits (369), Expect = 6e-44
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 35/192 (18%)
Query: 15 GPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPA-VCNCCKSLRQVVEIGKGGKVKYEL 73
G L ++ + V +HD+ + + N VVEI + K E+
Sbjct: 8 GAKNTLEYKVYIEKDGKPV--SAFHDIPLYADKENNIFNM------VVEIPRWTNAKLEI 59
Query: 74 DK-----------ASGLIKVDRVLYSSVVYPHNYGFIPRT------------ICEDSDPM 110
K G ++ R + Y HNYG P+T D+DP+
Sbjct: 60 TKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPI 119
Query: 111 DVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKEL---PP 167
DVL + + G + +A+G+M ++D+GE D K+IA+ +DP DI+++ P
Sbjct: 120 DVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFP 179
Query: 168 HRLAEIRRFFED 179
L +F
Sbjct: 180 GLLRATNEWFRI 191
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon
Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 170
Score = 140 bits (355), Expect = 5e-43
Identities = 66/142 (46%), Positives = 85/142 (59%), Gaps = 8/142 (5%)
Query: 41 LEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIP 100
L G AP V N +VEI +G +KYE D G+IKVDRVLY+S+ YP NYGFIP
Sbjct: 2 LSPGKNAPDVVNV------LVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIP 55
Query: 101 RTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCA--DDPEFRH 158
T+ ED DP+DVLV+ + PGS + R IG++ M D+ +D KI+AV DP F +
Sbjct: 56 GTLEEDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSN 115
Query: 159 YKDIKELPPHRLAEIRRFFEDC 180
KDI +LP +I FFE
Sbjct: 116 IKDINDLPQATKNKIVHFFEHY 137
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 25.3 bits (55), Expect = 2.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 36 HPWHDLEIGPGAPAVCNCCK 55
H H+LE+ C+ C+
Sbjct: 35 HEEHELELTRVQVYTCDKCE 54
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA
polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Length = 410
Score = 25.5 bits (55), Expect = 5.4
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 142 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDY 196
K+ + I D+ + Y + L P ++ +I + D + + +
Sbjct: 33 KETQKIYALYDNTGHKPYFLVD-LEPDKVGKIPKIVRDPSFDHIETVSKIDPYTW 86
>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 154
Score = 24.6 bits (53), Expect = 7.7
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 151 ADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVF 186
P + +KD + + I F +V+
Sbjct: 99 PPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVW 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.432
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 864,807
Number of extensions: 40483
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 9
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)