Query 027855
Match_columns 217
No_of_seqs 109 out of 1091
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 03:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_A 60S ribosomal protein L 100.0 2.8E-62 9.5E-67 405.9 -5.5 216 1-217 1-216 (216)
2 3o58_A L10A, 60S ribosomal pro 100.0 3.6E-63 1.2E-67 411.5 -13.2 217 1-217 1-217 (217)
3 1i2a_A 50S ribosomal protein L 100.0 3.1E-57 1E-61 376.0 20.5 210 5-217 2-212 (219)
4 3j21_A 50S ribosomal protein L 100.0 1E-58 3.5E-63 384.2 5.6 211 4-217 3-215 (216)
5 2zkr_5 60S ribosomal protein L 100.0 6.5E-57 2.2E-61 372.4 15.6 210 4-216 1-211 (212)
6 1mzp_A 50S ribosomal protein L 100.0 4.9E-56 1.7E-60 368.3 19.1 212 3-216 2-215 (217)
7 2wwq_5 50S ribosomal protein L 100.0 1E-49 3.5E-54 333.2 20.0 197 8-216 22-224 (234)
8 3qoy_A 50S ribosomal protein L 100.0 7.9E-50 2.7E-54 334.7 18.1 201 8-217 22-229 (242)
9 3bbo_D Ribosomal protein L1; l 100.0 2.8E-49 9.6E-54 342.9 10.6 198 8-217 136-339 (352)
10 3u42_A 50S ribosomal protein L 100.0 1.2E-46 4E-51 313.6 19.5 195 8-216 22-225 (229)
11 2ftc_A Mitochondrial ribosomal 100.0 6.3E-42 2.2E-46 278.2 19.6 175 31-216 2-183 (189)
12 2ov7_A 50S ribosomal protein L 99.9 9.7E-27 3.3E-31 178.5 11.9 116 2-216 12-133 (137)
13 3aon_B V-type sodium ATPase su 60.0 7.6 0.00026 28.0 3.3 92 64-162 4-109 (115)
14 3qoy_A 50S ribosomal protein L 56.5 3.6 0.00012 33.8 1.1 21 117-137 128-149 (242)
15 2wwq_5 50S ribosomal protein L 46.0 6.2 0.00021 32.1 1.0 20 117-136 124-144 (234)
16 3bbo_D Ribosomal protein L1; l 42.0 14 0.00047 32.0 2.6 20 117-136 238-258 (352)
17 2qai_A V-type ATP synthase sub 40.5 47 0.0016 23.6 4.9 79 64-154 2-99 (111)
18 2i4r_A V-type ATP synthase sub 39.3 29 0.001 24.3 3.6 73 62-139 9-85 (102)
19 3j21_A 50S ribosomal protein L 39.0 16 0.00055 29.2 2.4 20 117-136 117-138 (216)
20 2d00_A V-type ATP synthase sub 34.6 65 0.0022 22.6 4.8 73 62-139 3-78 (109)
21 2ov6_A V-type ATP synthase sub 27.6 78 0.0027 21.8 4.2 71 64-139 2-76 (101)
22 2kfe_A Meucin-24; alpha-helix, 26.4 49 0.0017 17.3 2.1 22 177-198 4-25 (26)
23 1xi3_A Thiamine phosphate pyro 25.4 52 0.0018 25.1 3.3 25 62-86 14-44 (215)
24 1e2b_A Enzyme IIB-cellobiose; 20.6 1.3E+02 0.0043 20.8 4.2 50 63-122 4-66 (106)
No 1
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=2.8e-62 Score=405.90 Aligned_cols=216 Identities=86% Similarity=1.275 Sum_probs=208.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCCCCccceeEecCCCCCCCcEEEEEeCcccHHHHHHc
Q 027855 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (217)
Q Consensus 1 ~s~~~~~~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~ 80 (217)
||+++++++.+||+.++.++++ ++++|+|+|+|+|+|++++|++++++|+.|.|||+++++.+||||++++.+++|+++
T Consensus 1 ~~k~~~~~l~eav~~~~~~~~~-~~~kF~etvel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~a 79 (216)
T 3iz5_A 1 MSKLQSDAVKDAITQIVGEARE-KKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKM 79 (216)
T ss_dssp CTGGGSCSSCEECTTTSSSSTT-HHHHCCCSSCCEEEEEEECCCCSSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccc-cccCCCccEEEEEEecccCcccccccceeecCCCCCCCCcEEEEEcChHhHHHHHhc
Confidence 8999999999999999987632 356799999999999999999999999999999999999999999998889999999
Q ss_pred CCCeeChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecccccHHHHHHHhhccceeEec
Q 027855 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLK 160 (217)
Q Consensus 81 g~~~i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~~~~l~~~i~~~~~~~~~~~~ 160 (217)
||+++|+++|++.+++++.+|+|+.+||+||||++|++.||++|||+|+|++|+|+|+++++|+.+.|+++++++.|+++
T Consensus 80 Ga~~vg~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~t~dv~~~v~~~k~~v~~r~~ 159 (216)
T 3iz5_A 80 GLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLK 159 (216)
T ss_dssp HHTCSEEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSCHHHHHHHHHHTBCCEEECTT
T ss_pred cCCEeCHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCCcccHHHHHHHHHhhhheeCC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCCCCChHHHhccHHHHHHHHHHhccccccceeEEEEEcCCCCceecC
Q 027855 161 KVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217 (217)
Q Consensus 161 ~~~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~~I~~v~lkst~s~~lpiy 217 (217)
+++|++++||+++|+++||+|||.++++++.+.+|++|.||+++||||||||++|||
T Consensus 160 k~~~i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p~~~~~Iksv~iksTmgp~i~iy 216 (216)
T 3iz5_A 160 KVLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYVKSTMGKRVRVF 216 (216)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCSSCCSCSCSEEEECCSSCCCEEEC
T ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEECCCCCCEecC
Confidence 999999999999999999999999999999999999999999999999999999999
No 2
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=3.6e-63 Score=411.46 Aligned_cols=217 Identities=63% Similarity=1.027 Sum_probs=206.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCCCCccceeEecCCCCCCCcEEEEEeCcccHHHHHHc
Q 027855 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (217)
Q Consensus 1 ~s~~~~~~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~ 80 (217)
||+++++++++||++|+++.++.++++|+|+|+|+|+||+++|++++++|+.|.|||+.+++.+||||++++.+++|+++
T Consensus 1 ~sk~~~~~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~a 80 (217)
T 3o58_A 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSC 80 (217)
T ss_dssp ---CCSTTHHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSSSSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTT
T ss_pred CCccCHHHHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCCCCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHc
Confidence 89999999999999999987444567899999999999999999999999999999999999999999999888999999
Q ss_pred CCCeeChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecccccHHHHHHHhhccceeEec
Q 027855 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLK 160 (217)
Q Consensus 81 g~~~i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~~~~l~~~i~~~~~~~~~~~~ 160 (217)
|++++|+++|++.++++|.+|+|+.+||+||||++||+.||++|||+|||++|+|+|+++++|+.+.|++++++++|+++
T Consensus 81 Ga~~vg~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~~vt~dv~~~v~~~k~~v~~r~~ 160 (217)
T 3o58_A 81 GVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLK 160 (217)
T ss_dssp TCCCCCSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCSCTTTCSSSGGGGTTSCCSCCCC
T ss_pred CCCEeCHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCcCCchhHHHHHHHHhceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCCCCChHHHhccHHHHHHHHHHhccccccceeEEEEEcCCCCceecC
Q 027855 161 KVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217 (217)
Q Consensus 161 ~~~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~~I~~v~lkst~s~~lpiy 217 (217)
+++|++++||+++|+++||+|||.++++++.+.+|++|.||+++||||||||++|||
T Consensus 161 k~~~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~pk~~~~iksi~lksTmgp~i~iy 217 (217)
T 3o58_A 161 KVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217 (217)
T ss_dssp SSSCCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSSSCSCCCSCCCCCSSSSCSCCC-
T ss_pred CCCEEEEeeccCCCCHHHHHHHHHHHHHHHHHhcccCCceEEEEEEECCCCCCEecC
Confidence 999999999999999999999999999999999999999999999999999999999
No 3
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=3.1e-57 Score=376.04 Aligned_cols=210 Identities=30% Similarity=0.463 Sum_probs=199.0
Q ss_pred CHHHHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCCC-CccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCC
Q 027855 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLD 83 (217)
Q Consensus 5 ~~~~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k~-~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~g~~ 83 (217)
+++++.+||++|+++. +.++|+|+|+|+|+|++++|+++ +++|+.|.|||+++++.+||||++++++++|+++|++
T Consensus 2 ~~~~l~eAv~~llk~~---~~~kf~etVel~i~LK~~dp~~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~ 78 (219)
T 1i2a_A 2 DREALLQAVKEARELA---KPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLT 78 (219)
T ss_dssp CHHHHHHHHHHHHHHS---CCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHhc---ccCCCCceEEEEEEecccCCcccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCC
Confidence 4899999999888875 46789999999999999999987 7999999999999999999999998888999999999
Q ss_pred eeChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecccccHHHHHHHhhccceeEecCcc
Q 027855 84 YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVL 163 (217)
Q Consensus 84 ~i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~~~~l~~~i~~~~~~~~~~~~~~~ 163 (217)
++|+++|.+..++++++|+++.+||+||||++||+.||++||+.|+|++++|+|+..++|+.+.|+++++++.|++++++
T Consensus 79 ~vg~~~L~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~gt~dv~~~v~~~k~~v~~r~~k~~ 158 (219)
T 1i2a_A 79 VIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKP 158 (219)
T ss_dssp EECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHHHHHHHHTEEEEECTTSS
T ss_pred EEcHHHHHHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCCCccHHHHHHHHhcceEEEecCCC
Confidence 99999995555578888999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EEEEEEcCCCCChHHHhccHHHHHHHHHHhccccccceeEEEEEcCCCCceecC
Q 027855 164 CMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217 (217)
Q Consensus 164 ~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~~I~~v~lkst~s~~lpiy 217 (217)
|++++||+++|+++||+|||.+++++|.+.+|++|.||+++||||||||++|||
T Consensus 159 ~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~~ik~v~lksTmgp~i~iy 212 (219)
T 1i2a_A 159 YFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVK 212 (219)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGGGGEEEEEEEETTSCCEECC
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHHHhCCccccceEEEEEECCCCCCEEeE
Confidence 999999999999999999999999999999999999999999999999999998
No 4
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-58 Score=384.19 Aligned_cols=211 Identities=31% Similarity=0.514 Sum_probs=201.6
Q ss_pred CCHHHHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCC
Q 027855 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (217)
Q Consensus 4 ~~~~~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k-~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~g~ 82 (217)
++++++.+||+.++++. ++++|+|+|+|+|+|++++|++ ++++|+.|.|||+++++.+||||++++++++|+++||
T Consensus 3 ~~~~~~~eav~~~~~~~---~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGa 79 (216)
T 3j21_A 3 FDRQKIVKAVKEAKARA---KPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGL 79 (216)
T ss_dssp SSCSSCCCCTTTTCCCC---CCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhC---cccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCC
Confidence 57788999999988765 4578999999999998899998 8999999999999999999999999888999999999
Q ss_pred CeeChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceeccc-ccHHHHHHHhhccceeEecC
Q 027855 83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-ESLESKVNETKATVKFQLKK 161 (217)
Q Consensus 83 ~~i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~~-~~l~~~i~~~~~~~~~~~~~ 161 (217)
+++|.++|.+.+++++++|+|+.+||+||||++||+.||++||+.|+|++|+|+|+..+ +|+.+.|+++++++.|++++
T Consensus 80 d~vg~e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv~dv~~~v~~~k~~v~~r~~k 159 (216)
T 3j21_A 80 DVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLKN 159 (216)
T ss_dssp CCCCTTHHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCBCSHHHHHHHHTCEEEEEEET
T ss_pred CccCHHHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHHHHhhceeecCC
Confidence 99999999999899988899999999999999999999999999999999999999877 99999999999999999999
Q ss_pred ccEEEEEEcCCCCChHHHhccHHHHHHHHHHhccccccceeEEEEEcCCCCceecC
Q 027855 162 VLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217 (217)
Q Consensus 162 ~~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~~I~~v~lkst~s~~lpiy 217 (217)
++|++++||+++|+++||+|||.+++++|.+.+|++|.||+++||||||||+++||
T Consensus 160 ~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~k~Iksi~lksTmgp~i~i~ 215 (216)
T 3j21_A 160 NPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGESQVKSVYVKTTMGPAVKIE 215 (216)
T ss_dssp TTEEECCCEESSSCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEESSSCCEECC
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccccccceEEEEEECCCCCCEEcc
Confidence 99999999999999999999999999999999999999999999999999999998
No 5
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.5e-57 Score=372.39 Aligned_cols=210 Identities=25% Similarity=0.422 Sum_probs=198.1
Q ss_pred CCHHHHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCC
Q 027855 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (217)
Q Consensus 4 ~~~~~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k-~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~g~ 82 (217)
++++++.+||++|+++. +.++|+|+|+|+|+||+++|++ ++++|+.|.|||+++++.+||||+++++.++|+++|+
T Consensus 1 ~~~~~l~eAv~~llk~~---~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 77 (212)
T 2zkr_5 1 MADQEIENAVSRALEDA---PERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVAD 77 (212)
T ss_dssp -CCTTHHHHHHHHHHTS---CCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhc---ccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCC
Confidence 47889999999887775 4678999999999999999996 8999999999999999999999999888899999999
Q ss_pred CeeChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecccccHHHHHHHhhccceeEecCc
Q 027855 83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKV 162 (217)
Q Consensus 83 ~~i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~~~~l~~~i~~~~~~~~~~~~~~ 162 (217)
+++|+++|.+..++||++|+++.+||+||||++||+.||++||+.|+|++++|+|+..++|+.+.|++++++++|+++++
T Consensus 78 ~~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~gt~dv~~~i~~~k~~v~~r~~k~ 157 (212)
T 2zkr_5 78 DVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDPDDDVVEVIERMKNTVQLRSGER 157 (212)
T ss_dssp CCCCHHHHHHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCSSSCCHHHHHHHHTEEECCCSSS
T ss_pred CEeCHHHHHHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCCCcCHHHHHHHHHcceEEEecCC
Confidence 99999999444458999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cEEEEEEcCCCCChHHHhccHHHHHHHHHHhccccccceeEEEEEcCCCCceec
Q 027855 163 LCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 216 (217)
Q Consensus 163 ~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~~I~~v~lkst~s~~lpi 216 (217)
+|++++||+++|+++||+|||.+++++|.+.+|++|.||+++||||||||+++|
T Consensus 158 ~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~~ik~v~lksTmgp~i~i 211 (212)
T 2zkr_5 158 RTFHTRVGAEDMSAENIADNIDVILRRLHADLEKGPLNIDTVYVKTTMGPAMEV 211 (212)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCCCTTTEEEEEEEESSSCCEEC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccccEEEEEEECCCCCCEEC
Confidence 999999999999999999999999999999999999999999999999999987
No 6
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=4.9e-56 Score=368.34 Aligned_cols=212 Identities=28% Similarity=0.409 Sum_probs=200.3
Q ss_pred CCCHHHHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCCC-CccceeEecCCCCCCCcEEEEEeCcccHHHHHHcC
Q 027855 3 KLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG 81 (217)
Q Consensus 3 ~~~~~~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k~-~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~g 81 (217)
-++++++.+||++|+++. +.+.++|+|+|+|+|+||+++|+++ +++|+.|.|||+++++.+||||+++++.++|+++|
T Consensus 2 ~v~~~~l~~Av~~ll~~~-~~~~~kf~etvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aG 80 (217)
T 1mzp_A 2 LADKESLIEALKLALSTE-YNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKAS 80 (217)
T ss_dssp CCCHHHHHHHHHHHHSTT-TCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHhhc-cccccCCCccEEEEEEecCCCCcccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcC
Confidence 378999999999999984 3456789999999999999999988 79999999999999999999999988889999999
Q ss_pred CC-eeChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecccccHHHHHHHhhccceeEec
Q 027855 82 LD-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLK 160 (217)
Q Consensus 82 ~~-~i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~~~~l~~~i~~~~~~~~~~~~ 160 (217)
++ ++|+++|.+..++++++|+++.+||+||||++||+.||++||+.|+|++++|+|+..+.|+.+.|++++++++|+++
T Consensus 81 ad~~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~gt~dv~~~v~~~k~~v~~r~~ 160 (217)
T 1mzp_A 81 PKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTK 160 (217)
T ss_dssp CSEECCHHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSSSCCHHHHHHHHTEEEEECS
T ss_pred CCeeeCHHHHHHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCCCccHHHHHHHHhcceEEEec
Confidence 98 99999996555678899999999999999999999999999999999999999998889999999999999999999
Q ss_pred CccEEEEEEcCCCCChHHHhccHHHHHHHHHHhccccccceeEEEEEcCCCCceec
Q 027855 161 KVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 216 (217)
Q Consensus 161 ~~~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~~I~~v~lkst~s~~lpi 216 (217)
+++|++++||+++|+++||+|||.+++++|.+.+|+ |.||+++||||||||+++|
T Consensus 161 k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~-~~~ik~v~lksTmgp~i~i 215 (217)
T 1mzp_A 161 DQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKV-ETNLRNIYVKTTMGKAVKV 215 (217)
T ss_dssp SSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCC-TTTEEEEEEEETTSCCEEC
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc-chheEEEEEECCCCCCeeC
Confidence 999999999999999999999999999999999999 9999999999999999986
No 7
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=1e-49 Score=333.18 Aligned_cols=197 Identities=19% Similarity=0.349 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCCeeC
Q 027855 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMD 86 (217)
Q Consensus 8 ~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k-~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~g~~~i~ 86 (217)
.+.+|++.|++. ...+|+|+|+|+|+| +++|++ ++++|+.|.|||+++++.+||||++++++++|+++||+++|
T Consensus 22 ~~~eAv~~lk~~----~~~kF~etvel~i~L-~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGad~vg 96 (234)
T 2wwq_5 22 DINEAIALLKEL----ATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVG 96 (234)
T ss_dssp CHHHHHHHHHHT----CCCSSCCEEEEEEEE-CSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTCSEEC
T ss_pred CHHHHHHHHHHh----ccCCCCceEEEEEEE-CCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCCCEEc
Confidence 578898887543 367899999999999 999997 88999999999999999999999998889999999999999
Q ss_pred hHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecc--cccHHHHHHHhhcc-ceeEecCcc
Q 027855 87 VEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTH--QESLESKVNETKAT-VKFQLKKVL 163 (217)
Q Consensus 87 ~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~--~~~l~~~i~~~~~~-~~~~~~~~~ 163 (217)
+++|++.++.+ +.+||+||||+++|+.|++ ||+.|+|++++|+|+.. +.|+.+.|++++++ +.|++++++
T Consensus 97 ~edLi~kik~~------~~~fD~~iAtp~~m~~l~~-LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~~r~~k~~ 169 (234)
T 2wwq_5 97 MEDLADQIKKG------EMNFDVVIASPDAMRVVGQ-LGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNG 169 (234)
T ss_dssp SHHHHHHHHHT------CCCSSEEEECHHHHHHTTS-SCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEEECCSSSC
T ss_pred HHHHHHHHHcC------cccCCEEEECHHHHHHHHH-HhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeEEEecCCc
Confidence 99998766544 5899999999999999999 99999999999999975 68999999999985 799999999
Q ss_pred EEEEEEcCCCCChHHHhccHHHHHHHHHHhccccc--cceeEEEEEcCCCCceec
Q 027855 164 CMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNW--QNVRCLYLKSTMGPSNRI 216 (217)
Q Consensus 164 ~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~--~~I~~v~lkst~s~~lpi 216 (217)
|++++||+++|+++||+||+.+++++|.+.+|++| .||+++||||||||+++|
T Consensus 170 ~i~v~VG~~~f~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lksTmgp~i~i 224 (234)
T 2wwq_5 170 IIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAV 224 (234)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSCCSCCEEEEEEEESSSCEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCcccccCCeEEEEEEECCCCCCEEE
Confidence 99999999999999999999999999999999998 599999999999999986
No 8
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=7.9e-50 Score=334.66 Aligned_cols=201 Identities=26% Similarity=0.420 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCCeeC
Q 027855 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMD 86 (217)
Q Consensus 8 ~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k-~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~g~~~i~ 86 (217)
.+.+||+.+++.... +.++|+|+|+|+|+| +++|++ ++++|++|.|||+++++.+||||++++++++|+++||+++|
T Consensus 22 ~l~eAi~~~k~~~~~-~~rkF~etVel~i~L-~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~aGad~vg 99 (242)
T 3qoy_A 22 TLEEAVDLLKKMEEV-LQRRFDETVELAMRL-NVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVG 99 (242)
T ss_dssp CHHHHHHHHHHHHHH-HCCSSCCEEEEEEEE-SCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHhhccc-ccCCCCCcEEEEEEe-ccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHHcCCCEEC
Confidence 578999999988633 357899999999999 899998 88999999999999999999999998889999999999999
Q ss_pred hHHHHhhh-hcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecc--cccHHHHHHHhhc-cceeEecCc
Q 027855 87 VEGLKKLN-KNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTH--QESLESKVNETKA-TVKFQLKKV 162 (217)
Q Consensus 87 ~~~l~k~~-~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~--~~~l~~~i~~~~~-~~~~~~~~~ 162 (217)
+++|++.+ + +.+.+||+|||++++|+.|++ ||+.|.|++++|+|+.. ++|+.+.|+++++ ++.|+++++
T Consensus 100 ~~dLi~ki~k------~g~~~fD~~iAtpd~m~~l~~-LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~G~v~fr~~k~ 172 (242)
T 3qoy_A 100 GDELINKILK------EEWTDFDVAIATPEMMPKVAK-LGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKA 172 (242)
T ss_dssp SHHHHHHHHH------HTCCCCSEEEECTTTHHHHGG-GHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHTTEEEEECCTT
T ss_pred cHHHHHHHHh------CCCccCCEEEECHHHHHHHHH-HhHHhccccCCCcccCCccchhHHHHHHHHhcCcEEEEecCC
Confidence 99999875 4 347899999999999999988 77777778888887764 5999999999997 799999999
Q ss_pred cEEEEEEcCCCCChHHHhccHHHHHHHHHHhccc--cccceeEEEEEcCCCCceecC
Q 027855 163 LCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK--NWQNVRCLYLKSTMGPSNRIF 217 (217)
Q Consensus 163 ~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~--~~~~I~~v~lkst~s~~lpiy 217 (217)
+|++++||+++|+++||+|||.+++++|.+.+|. +|.||+++||||||||+++|.
T Consensus 173 ~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lkSTmGp~i~i~ 229 (242)
T 3qoy_A 173 GNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLD 229 (242)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEEETTSCCEEBC
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCcccCCceEEEEEEECCCCCCEEEE
Confidence 9999999999999999999999999999999998 499999999999999999984
No 9
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.8e-49 Score=342.90 Aligned_cols=198 Identities=25% Similarity=0.379 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCCeeC
Q 027855 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMD 86 (217)
Q Consensus 8 ~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k-~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~g~~~i~ 86 (217)
.+.+||+.|++.. ..+|+|+|+|+|+| ++++++ ++++|+.|.|||+.+++.+||||+++++.++|+++|++++|
T Consensus 136 ~l~EAi~llK~~~----~~KFdETVEl~I~L-~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAdvVG 210 (352)
T 3bbo_D 136 DLKTALSLMKQMS----STKFVETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVG 210 (352)
T ss_dssp CTTTTHHHHSTTC----CSSSCCEECCEEEE-CSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTTCSEEE
T ss_pred CHHHHHHHHHhcc----ccCCCceEEEEEEe-CCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcCCCccC
Confidence 4678888777653 67899999999999 999986 89999999999999999999999998888999999999999
Q ss_pred hHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecc--cccHHHHHHHhhcc-ceeEecCcc
Q 027855 87 VEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTH--QESLESKVNETKAT-VKFQLKKVL 163 (217)
Q Consensus 87 ~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~--~~~l~~~i~~~~~~-~~~~~~~~~ 163 (217)
+++|++.++ +++.+||+||||++||+.|++ ||+.|.|+++||+|+.. +.|+.+.|++++++ +.|++++++
T Consensus 211 ~edLikkIK------kg~~dFD~fIAtpdmM~~lgr-LGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~G~v~fR~dK~g 283 (352)
T 3bbo_D 211 GEELIEQIK------GGFMDFDKLIATSDMMAKVAS-LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTG 283 (352)
T ss_dssp CTTTHHHHT------TTCCCCSEEEECSSSHHHHGG-GGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCCEEEECCSSC
T ss_pred HHHHHHHHH------hchhhcCEEEECHHHHHHHHh-hcccccccCCCCCCcCCcccccHHHHHHHHHcCeeEEEeCCCC
Confidence 999998865 468999999999999999999 99999999999999975 68999999999985 799999999
Q ss_pred EEEEEEcCCCCChHHHhccHHHHHHHHHHhcccccc--ceeEEEEEcCCCCceecC
Q 027855 164 CMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQ--NVRCLYLKSTMGPSNRIF 217 (217)
Q Consensus 164 ~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~--~I~~v~lkst~s~~lpiy 217 (217)
|++++||+++|++|||+|||.+++++|.+.+|++|. ||+++||||||||+++||
T Consensus 284 ~ihv~VGk~sfs~EqL~ENI~Avi~~L~k~kP~~~KG~yIksv~LkSTMGPgi~I~ 339 (352)
T 3bbo_D 284 IVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLN 339 (352)
T ss_dssp EECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEECCBSSSCCCEEC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEEE
Confidence 999999999999999999999999999999999985 999999999999999997
No 10
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=1.2e-46 Score=313.57 Aligned_cols=195 Identities=27% Similarity=0.438 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCCeeC
Q 027855 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMD 86 (217)
Q Consensus 8 ~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k-~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~g~~~i~ 86 (217)
.+.+|++.|++.. ..+|+|+|+++|+| ++++++ ++++|+.|.|||+++++.+||||++++.+++|+++||+++|
T Consensus 22 ~~~eAi~~lk~~~----~~kF~etvel~i~L-~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aGAd~vG 96 (229)
T 3u42_A 22 TIDEAAHLVKELA----TAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVG 96 (229)
T ss_dssp CHHHHHHHHHHHC----CSSSCCEEEEEEEE-SSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHhC----CCCCCccEEEEEEE-ccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcCCceeC
Confidence 4789998888875 67899999999999 888887 88999999999999999999999999889999999999999
Q ss_pred hHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhh----hhhCC-CCCCCCCCCceecccccHHHHHHHhhc-cceeEec
Q 027855 87 VEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP----RLLGP-GLNKAGKFPTLVTHQESLESKVNETKA-TVKFQLK 160 (217)
Q Consensus 87 ~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~----~~LG~-~f~~~~K~P~~v~~~~~l~~~i~~~~~-~~~~~~~ 160 (217)
++||++.++++ +.+||+|||++++|+.++ ++||| ++||+.|.|| +++|+.+.|++++. ++.|+.+
T Consensus 97 ~~dLi~kIk~g------~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GT---vt~dv~~~v~~~K~g~v~~r~d 167 (229)
T 3u42_A 97 GEEIIQKILDG------WMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGT---VGFNIGEIIREIKAGRIEFRND 167 (229)
T ss_dssp CTHHHHHHHTT------CCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTC---BSSCHHHHHHHHHTTEEEEECC
T ss_pred cHHHHHHHhcC------CccccEEEEchHHHHHHHHhhccccccccccccCCCCC---CCCCHHHHHHHHhCceEEEEeC
Confidence 99999887765 689999999999998865 46666 6666666666 68999999999986 7999999
Q ss_pred CccEEEEEEcCCCCChHHHhccHHHHHHHHHHhccccccc--eeEEEEEcCCCCceec
Q 027855 161 KVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQN--VRCLYLKSTMGPSNRI 216 (217)
Q Consensus 161 ~~~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~~--I~~v~lkst~s~~lpi 216 (217)
+.++++++||+++|+++||.||+.+++++|.+..|.+|.+ |+++||+|||||+++|
T Consensus 168 k~g~i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~~ik~v~lssTmGp~i~i 225 (229)
T 3u42_A 168 KTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRI 225 (229)
T ss_dssp TTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEECSSSCCEEB
T ss_pred CCCeecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCCeEEEEEEECCCCcCeEe
Confidence 9999999999999999999999999999999999998766 9999999999999987
No 11
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=6.3e-42 Score=278.16 Aligned_cols=175 Identities=18% Similarity=0.246 Sum_probs=154.6
Q ss_pred cEEEEEEEcccCCCCCCccceeEecCCCCCCCc-EEEEEeCc-ccHHHHHHcCCCeeChHHHHhhhhcHHHHHHHhhhcC
Q 027855 31 TIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM-KVCMLGDA-QHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYH 108 (217)
Q Consensus 31 ~i~l~i~lk~~~~~k~~~~~~~i~LPh~~~~~~-~Icvf~~~-~~~~~a~~~g~~~i~~~~l~k~~~~~~~~r~l~~~~D 108 (217)
.|+|++++++ .++..++|+.|.|||++++.. +||||+++ +++++|+++||+++|.++|++.++.. +.+||
T Consensus 2 ~ieL~m~l~~--~r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~------~~~fD 73 (189)
T 2ftc_A 2 DLTLDMALGK--KKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDD------EIVAD 73 (189)
T ss_pred eEEEEEEecC--CccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcC------CccCC
Confidence 4788999865 466778899999999976654 99999998 57889999999999999998776654 48999
Q ss_pred EEEechhhHhhhhhhhCCCCCCCCCCCceecc--cccHHHHHHHhhccceeEecCcc--EEEEEEcCCCCChHHHhccHH
Q 027855 109 AFLASESVIKQIPRLLGPGLNKAGKFPTLVTH--QESLESKVNETKATVKFQLKKVL--CMGVAVGNLSMEEKQIFQNVQ 184 (217)
Q Consensus 109 ~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~--~~~l~~~i~~~~~~~~~~~~~~~--~~~v~VG~~~m~~~~i~eNi~ 184 (217)
+|||++++|+.|++++|+ |. +|+|+|... +.|+.+.|++++++..|++++.+ |++++||+++|++|||+||+.
T Consensus 74 ~~iAtp~~m~~l~~l~~~-Lg--~KmP~pk~gTvt~dv~~~v~~~k~g~~~r~~k~~~~~i~v~VG~~~~~~e~L~eNi~ 150 (189)
T 2ftc_A 74 FYVAVPEIMPELNRLRKK-LN--KKYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQ 150 (189)
T ss_pred EEEECHHHHHHHHHhhcc-cc--CCCCcccCCCccccHHHHHHHHhcceEEEeccCCCcEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999997543 43 347777764 78999999999998899999988 999999999999999999999
Q ss_pred HHHHHHHHhccccc-cceeEEEEEcCCCCceec
Q 027855 185 MSVNFLVSLLKKNW-QNVRCLYLKSTMGPSNRI 216 (217)
Q Consensus 185 a~i~~l~~~~p~~~-~~I~~v~lkst~s~~lpi 216 (217)
+++++|.+.+|++| .||+++||+|||||+++|
T Consensus 151 a~i~~l~~~~p~~~g~~ik~v~lssTmgp~i~i 183 (189)
T 2ftc_A 151 AVINEVCRHRPLNLGPFVVRAFLRSSTSEGLLL 183 (189)
T ss_pred HHHHHHHHhCchhcCccEEEEEEECCCCCCEEE
Confidence 99999999999998 899999999999999986
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.94 E-value=9.7e-27 Score=178.55 Aligned_cols=116 Identities=28% Similarity=0.476 Sum_probs=105.0
Q ss_pred CCCCHHHH---HHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHH
Q 027855 2 SKLQSDAL---REAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEA 77 (217)
Q Consensus 2 s~~~~~~i---~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k-~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a 77 (217)
++++++.+ .+||+.+++ ....+|+|+|+|+|+| +++|++ ++++||.|.|||+
T Consensus 12 ~kv~~~~~y~~~eAi~~~k~----~~~~kF~EtVel~i~L-~vDprk~dq~vrgtV~LP~g------------------- 67 (137)
T 2ov7_A 12 EKVDPNKIYTIDEAAHLVKE----LATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHG------------------- 67 (137)
T ss_dssp TTSCTTCCBCHHHHHHHHHH----TCCSSSCCEEEEEEEE-SSCTTCSSCCCEEEEECTTS-------------------
T ss_pred HhcCcccccCHHHHHHHHHh----cccCCCCccEEEEEEe-CCCCccccceeeEEEEcCCC-------------------
Confidence 45565544 699998753 2478899999999999 999997 9999999999997
Q ss_pred HHcCCCeeChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecccccHHHHHHHhhcccee
Q 027855 78 EKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKF 157 (217)
Q Consensus 78 ~~~g~~~i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~~~~l~~~i~~~~~~~~~ 157 (217)
+++.|
T Consensus 68 ---------------------------------------------------------------------------g~v~f 72 (137)
T 2ov7_A 68 ---------------------------------------------------------------------------GRIEF 72 (137)
T ss_dssp ---------------------------------------------------------------------------CEEEE
T ss_pred ---------------------------------------------------------------------------CeEEE
Confidence 78999
Q ss_pred EecCccEEEEEEcCCCCChHHHhccHHHHHHHHHHhccccc--cceeEEEEEcCCCCceec
Q 027855 158 QLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNW--QNVRCLYLKSTMGPSNRI 216 (217)
Q Consensus 158 ~~~~~~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~--~~I~~v~lkst~s~~lpi 216 (217)
++++.+|++++||+++|++|||+||+.+++++|.+.+|.+| .||+++||+|||||+++|
T Consensus 73 r~dk~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~kg~~ik~v~issTMGp~i~i 133 (137)
T 2ov7_A 73 RNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRI 133 (137)
T ss_dssp ECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEB
T ss_pred EECCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEe
Confidence 99999999999999999999999999999999999999998 599999999999999986
No 13
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=59.98 E-value=7.6 Score=28.01 Aligned_cols=92 Identities=15% Similarity=0.250 Sum_probs=55.6
Q ss_pred EEEEEeCcccHHHHHHcCCCee---ChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecc
Q 027855 64 KVCMLGDAQHVEEAEKIGLDYM---DVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTH 140 (217)
Q Consensus 64 ~Icvf~~~~~~~~a~~~g~~~i---~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~ 140 (217)
+|+|+.|.+..--.+-+|++.. +.+++.+.++.. +..++.+++.+.++...++..+-. +.+...|..+..
T Consensus 4 KiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~~~l-----~~~digIIlIte~ia~~i~~~i~~--~~~~~~P~IveI 76 (115)
T 3aon_B 4 KIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTIDEM-----AKNEYGVIYITEQCANLVPETIER--YKGQLTPAIILI 76 (115)
T ss_dssp EEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHHHHH-----HHTTEEEEEEEHHHHTTCHHHHHH--HHTSSSCEEEEE
T ss_pred EEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHHHHH-----HhcCceEEEEeHHHHHHhHHHHHH--HhCCCCCEEEEE
Confidence 7889998544433455788743 345555554332 123889999999999998887765 445668877642
Q ss_pred -----c-----ccHHHHHHHhhc-cceeEecCc
Q 027855 141 -----Q-----ESLESKVNETKA-TVKFQLKKV 162 (217)
Q Consensus 141 -----~-----~~l~~~i~~~~~-~~~~~~~~~ 162 (217)
+ +.+.+.++++.+ .+.|..+.|
T Consensus 77 Ps~~g~~~~~~~~i~~~V~~aiG~di~~~~~~~ 109 (115)
T 3aon_B 77 PSHQGTLGIGLEEIQNSVEKAVGQNILSGPSSG 109 (115)
T ss_dssp CBTTBCCSHHHHHHHHHHHHHTTCC--------
T ss_pred CCCCCCCCccHHHHHHHHHHHhCcceEecCCCC
Confidence 1 257888888887 555554444
No 14
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=56.46 E-value=3.6 Score=33.82 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=17.7
Q ss_pred HhhhhhhhCC-CCCCCCCCCce
Q 027855 117 IKQIPRLLGP-GLNKAGKFPTL 137 (217)
Q Consensus 117 ~~~l~~~LG~-~f~~~~K~P~~ 137 (217)
++.|+++||| ++||+.|.+|+
T Consensus 128 l~~LGriLGPrGlmP~pk~gTv 149 (242)
T 3qoy_A 128 VAKLGRILGPRGLMPSPKTGTV 149 (242)
T ss_dssp HGGGHHHHGGGTCSCCGGGTCB
T ss_pred HHHHhHHhccccCCCcccCCcc
Confidence 4568999999 99999988863
No 15
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=46.03 E-value=6.2 Score=32.14 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=17.5
Q ss_pred HhhhhhhhCC-CCCCCCCCCc
Q 027855 117 IKQIPRLLGP-GLNKAGKFPT 136 (217)
Q Consensus 117 ~~~l~~~LG~-~f~~~~K~P~ 136 (217)
++.|+++||| ++||+.|.+|
T Consensus 124 l~~LGkiLgprGlmP~pk~gT 144 (234)
T 2wwq_5 124 VGQLGQVLGPRGLMPNPKVGT 144 (234)
T ss_dssp TTSSCSCCCSSCCSCCTTTTC
T ss_pred HHHHhhhhccCCCCCCccCCC
Confidence 3559999999 9999999997
No 16
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=41.95 E-value=14 Score=31.95 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=17.3
Q ss_pred HhhhhhhhCC-CCCCCCCCCc
Q 027855 117 IKQIPRLLGP-GLNKAGKFPT 136 (217)
Q Consensus 117 ~~~l~~~LG~-~f~~~~K~P~ 136 (217)
++.|+++||| ++||+.|.+|
T Consensus 238 lgrLGkiLGPRGlMPnPk~GT 258 (352)
T 3bbo_D 238 VASLGRILGPRGLMPTPKAGT 258 (352)
T ss_dssp HGGGGGTTTTTTCSCCTTTTC
T ss_pred HHhhcccccccCCCCCCcCCc
Confidence 4569999999 9999988886
No 17
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=40.53 E-value=47 Score=23.59 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=48.8
Q ss_pred EEEEEeCcccHHHHHHcCCCe--e--Ch----HHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhh--hhhCCCCCCCCC
Q 027855 64 KVCMLGDAQHVEEAEKIGLDY--M--DV----EGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP--RLLGPGLNKAGK 133 (217)
Q Consensus 64 ~Icvf~~~~~~~~a~~~g~~~--i--~~----~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~--~~LG~~f~~~~K 133 (217)
+|+|+.|.+..--.+-+|+.. + .. +++.+.++..-. ..+|.+++.+.++...++ ..+-
T Consensus 2 KIaVIGD~Dtv~GFrLaGi~~~~v~~~~~t~~ee~~~~~~~l~~----~~digIIlIte~ia~~i~~~~~i~-------- 69 (111)
T 2qai_A 2 KIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKLRELLE----RDDVGIILITERLAQRIGSLPEVK-------- 69 (111)
T ss_dssp EEEEEECHHHHHHHHHHTCSEEEECCSSHHHHHHHHHHHHHHHT----CTTEEEEEEEHHHHHHHCSCCCCS--------
T ss_pred EEEEEECHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHhh----CCCeEEEEEcHHHHhhcccccccC--------
Confidence 688999855444445578873 3 33 455554433210 257999999999999998 4432
Q ss_pred CCceecc---------cccHHHHHHHhhcc
Q 027855 134 FPTLVTH---------QESLESKVNETKAT 154 (217)
Q Consensus 134 ~P~~v~~---------~~~l~~~i~~~~~~ 154 (217)
.|+.+.. .+.+.+.++++.+.
T Consensus 70 ~P~IleIPs~~g~~~~~d~i~~~V~~aiG~ 99 (111)
T 2qai_A 70 FPIILQIPDKFGSIYGEDILRDVVRRAIGV 99 (111)
T ss_dssp SSEEEEECTTC------CTHHHHHHHHC--
T ss_pred CCEEEEECCCCCCCchHHHHHHHHHHHhCh
Confidence 6665532 14577788877663
No 18
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=39.30 E-value=29 Score=24.27 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=46.1
Q ss_pred CcEEEEEeCcccHHHHHHcCCCee----ChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCce
Q 027855 62 KMKVCMLGDAQHVEEAEKIGLDYM----DVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTL 137 (217)
Q Consensus 62 ~~~Icvf~~~~~~~~a~~~g~~~i----~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~ 137 (217)
.--+.|+.|.+..--.+-+|+..+ +.+++.+.++..-. ..+|.+++.+.++...++..+-. +..+...|..
T Consensus 9 ~~~~aVIGD~Dtv~GFrLaGi~~~~~~~~~ee~~~~~~~l~~----~~digIIlIte~ia~~i~~~i~~-~~~~~~~P~I 83 (102)
T 2i4r_A 9 SHMLAVVGDPDFTIGFMLAGISDIYEVTSDEEIVKAVEDVLK----RDDVGVVIMKQEYLKKLPPVLRR-EIDEKVEPTF 83 (102)
T ss_dssp CCEEEEEECHHHHHHHHHTTCCCEEECCSHHHHHHHHHHHHH----CSSEEEEEEEGGGSTTSCHHHHT-TTTTCCSSEE
T ss_pred ceeEEEEcCHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHhh----CCCeEEEEEeHHHHHHHHHHHHH-HHhCCCccEE
Confidence 335667776555444566788732 34556655443311 24689999999999999887764 3223478887
Q ss_pred ec
Q 027855 138 VT 139 (217)
Q Consensus 138 v~ 139 (217)
+.
T Consensus 84 ie 85 (102)
T 2i4r_A 84 VS 85 (102)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 19
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.04 E-value=16 Score=29.19 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=15.4
Q ss_pred Hhh-hhhhhCC-CCCCCCCCCc
Q 027855 117 IKQ-IPRLLGP-GLNKAGKFPT 136 (217)
Q Consensus 117 ~~~-l~~~LG~-~f~~~~K~P~ 136 (217)
++. |++.||| ++||..+.++
T Consensus 117 l~k~LGk~LgprgkmP~pk~gt 138 (216)
T 3j21_A 117 IGRYLGRYLGPRNKMPVVVPPT 138 (216)
T ss_dssp HHHHHHHHHTTSSSSCCTTTTC
T ss_pred HHHHHHHHhccCCccCCCcCCc
Confidence 444 7888888 8888888777
No 20
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=34.60 E-value=65 Score=22.63 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=45.7
Q ss_pred CcEEEEEeCcccHHHHHHcCCCe--e-ChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCcee
Q 027855 62 KMKVCMLGDAQHVEEAEKIGLDY--M-DVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV 138 (217)
Q Consensus 62 ~~~Icvf~~~~~~~~a~~~g~~~--i-~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v 138 (217)
..+|+|+.|.+..--.+-+|++. + +.+++.+.++..-. ..+|.+++.+.++...++..+-. +......|..+
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~~~l~~----~~digIIlIte~~a~~i~~~i~~-~~~~~~~P~Il 77 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVE----RGGYALVAVDEALLPDPERAVER-LMRGRDLPVLL 77 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHHHHHHH----HCCCSEEEEETTTCSCHHHHHHH-HTTCCCCCEEE
T ss_pred ccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHhh----CCCeEEEEEeHHHHHhhHHHHHH-HHhCCCCeEEE
Confidence 34799999865554456678874 3 34556555443311 24799999999998887765543 11245577666
Q ss_pred c
Q 027855 139 T 139 (217)
Q Consensus 139 ~ 139 (217)
.
T Consensus 78 ~ 78 (109)
T 2d00_A 78 P 78 (109)
T ss_dssp E
T ss_pred E
Confidence 4
No 21
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=27.56 E-value=78 Score=21.83 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=42.7
Q ss_pred EEEEEeCcccHHHHHHcCCC-e--e-ChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceec
Q 027855 64 KVCMLGDAQHVEEAEKIGLD-Y--M-DVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVT 139 (217)
Q Consensus 64 ~Icvf~~~~~~~~a~~~g~~-~--i-~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~ 139 (217)
+|+|+.|.+..--.+-+|+. + + +.+++.+.++..-. ..+|.+++.+.++...++..+-.. +.+...|..+.
T Consensus 2 kiaVIGD~dtv~GFrLaGi~~v~~v~~~ee~~~~~~~l~~----~~digIIlite~~a~~i~~~i~~~-~~~~~~P~Iv~ 76 (101)
T 2ov6_A 2 ELAVIGKSEFVTGFRLAGISKVYETPDIPATESAVRSVLE----DKSVGILVMHNDDIGNLPEVLRKN-LNESVQPTVVA 76 (101)
T ss_dssp CEEEEECHHHHHHHHHHTCCEEEECCSTTTHHHHHHHHHH----HTSSSEEEEEHHHHTTCTTTTHHH-HHHHCCSCEEE
T ss_pred EEEEEECHHHHHHHHHcCCCceEecCCHHHHHHHHHHHhh----CCCeEEEEEcHHHHHHhHHHHHHH-HhCCCCcEEEE
Confidence 68889885544444567888 3 3 44556655443211 247999999999988887654111 11235666553
No 22
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=26.44 E-value=49 Score=17.29 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=18.1
Q ss_pred HHHhccHHHHHHHHHHhccccc
Q 027855 177 KQIFQNVQMSVNFLVSLLKKNW 198 (217)
Q Consensus 177 ~~i~eNi~a~i~~l~~~~p~~~ 198 (217)
.|+..||...+..+.+++..+|
T Consensus 4 kei~~kiK~kl~~akdK~k~~w 25 (26)
T 2kfe_A 4 REFMSNLKEKLSGVKEKMKNSX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHccC
Confidence 5788999999999988887777
No 23
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=25.40 E-value=52 Score=25.09 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=18.0
Q ss_pred CcEEEEEeCc------ccHHHHHHcCCCeeC
Q 027855 62 KMKVCMLGDA------QHVEEAEKIGLDYMD 86 (217)
Q Consensus 62 ~~~Icvf~~~------~~~~~a~~~g~~~i~ 86 (217)
..++|+|+++ +..+.+.+.|++.+.
T Consensus 14 ~~~l~~It~~~~~~~~~~~~~~~~~G~~~i~ 44 (215)
T 1xi3_A 14 KLKLYVITDRRLKPEVESVREALEGGATAIQ 44 (215)
T ss_dssp HTSEEEECCTTTSCHHHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCchhhHHHHHHHHHHCCCCEEE
Confidence 4579999976 345567788998654
No 24
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=20.57 E-value=1.3e+02 Score=20.80 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=31.5
Q ss_pred cEEEEEeCc-cc--------HHHHHHcCCCe----eChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhh
Q 027855 63 MKVCMLGDA-QH--------VEEAEKIGLDY----MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 122 (217)
Q Consensus 63 ~~Icvf~~~-~~--------~~~a~~~g~~~----i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~ 122 (217)
.+|+++|-. -. .+.+++.|+++ .+..++... ..+||++|..+.+-..+..
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~----------~~~~Dvil~~pqv~~~~~~ 66 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEK----------GQNADVVLLGPQIAYMLPE 66 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHH----------HHHCSEEEECTTSGGGHHH
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhh----------ccCCCEEEEccchhhhHHH
Confidence 478888853 11 35667788863 344444332 4779999998887555433
Done!