RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027855
(217 letters)
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 217
Score = 151 bits (382), Expect = 1e-46
Identities = 60/212 (28%), Positives = 111/212 (52%), Gaps = 4/212 (1%)
Query: 7 DALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKV 65
++L EA+ + ++ KRNFT+++E+ + K D +K D + V LP P +V
Sbjct: 6 ESLIEALK-LALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRV 64
Query: 66 CMLGDAQHVEEAEKIGLD-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLL 124
++ ++ +E A+K + E L+KL K+ VKKLA++ FL ++ + R+L
Sbjct: 65 LVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRIL 124
Query: 125 GPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQ 184
GP L GKFPT + + + +N K +V + K + V +G M+ + + +N
Sbjct: 125 GPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENAI 184
Query: 185 MSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 216
+N + + K N+R +Y+K+TMG + ++
Sbjct: 185 AVLNAIENKAKV-ETNLRNIYVKTTMGKAVKV 215
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 212
Score = 150 bits (379), Expect = 3e-46
Identities = 64/209 (30%), Positives = 111/209 (53%), Gaps = 2/209 (0%)
Query: 10 REAVSSIVQYSKET-KKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCM 67
REA+ V+ ++E K RNFT++ E LK D +K + R V LPH + K+ +
Sbjct: 3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAV 62
Query: 68 LGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPG 127
+G ++AE++GL + E +++L KNK+ ++K+AK + F+A ++ I R +G
Sbjct: 63 IGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVI 122
Query: 128 LNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSV 187
L GK P V +++ V K TV + V VGN M ++QI N++ +
Sbjct: 123 LGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVL 182
Query: 188 NFLVSLLKKNWQNVRCLYLKSTMGPSNRI 216
N + +K +++ Y+K TMGP+ ++
Sbjct: 183 NVVAKKYEKGLYHIKDAYVKLTMGPAVKV 211
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 110 bits (277), Expect = 7e-31
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 11/210 (5%)
Query: 12 AVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDA 71
+ KE F ET+E+ L + D+ G+V LPH +++V +
Sbjct: 17 TIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKG 76
Query: 72 QHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKA 131
+ ++EAE+ G DY+ E + + + + A +A+ V+ + LG L
Sbjct: 77 EKIKEAEEAGADYVGGEEIIQKILDGW------MDFDAVVATPDVMGAVGSKLGRILGPR 130
Query: 132 GKFPTLV--THQESLESKVNETKA-TVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVN 188
G P T ++ + E KA ++F+ K + VG +++ N++ +
Sbjct: 131 GLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIR 190
Query: 189 FLVSLLKKNWQN--VRCLYLKSTMGPSNRI 216
L + + + +R +Y+ +TMGPS RI
Sbjct: 191 ALEAHKPEGAKGTFLRSVYVTTTMGPSVRI 220
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster
[TaxId: 7227]}
Length = 102
Score = 25.3 bits (55), Expect = 3.2
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 52 SVKLPHIPRPKM-KVCMLGDAQHV--EEAEKIGLDYMDVEGLKKLNKNKK 98
++ + +P P ++C DA V + A + L VE + + +
Sbjct: 4 TMAIRLLPLPVRAQLCAHLDALDVWQQLATAVKLYPDQVEQISSQKQRGR 53
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 25.6 bits (55), Expect = 4.7
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 55 LPHIPRPKMKVCMLG--DAQHVEEA 77
P +P P + LG A H E
Sbjct: 2 FPTLPHPHGTLFALGLNYADHASEL 26
>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
PRAI {Thermus thermophilus [TaxId: 274]}
Length = 200
Score = 24.8 bits (53), Expect = 7.3
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 62 KMKVCMLGDAQHVEEAEKIGLDYM 85
++K+C + + AE +G +
Sbjct: 2 RVKICGITRLEDALLAEALGAFAL 25
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 25.0 bits (54), Expect = 8.4
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 95 KNKKLVKKLAKKYHAFLASESVIKQ------IPRLLG 125
K+ +K L + A L S+++ + L+G
Sbjct: 218 SRKEELKALEGLFDAVLIGTSLMRAPDLEAALRELVG 254
>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain
{Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Length = 262
Score = 24.9 bits (54), Expect = 8.6
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 121 PRLLGPGLNKAG---KFPTLVTHQESLESKVNETKATVKFQL---KKVLCMGVAVGN--- 171
P LG + +A + P L ++ LE ++ V+ + + N
Sbjct: 177 PTNLGTTM-RASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRR 235
Query: 172 LSMEEKQIFQNVQMSVNFLVSL 193
L + E Q + +Q + ++ +
Sbjct: 236 LGLTEYQAVREMQDGILEMIKM 257
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.364
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 716,138
Number of extensions: 31940
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 19
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)