BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027856
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 296 bits (757), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 140/174 (80%), Positives = 158/174 (90%)
Query: 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
AGQERYR ITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
LRHLRAV T++A AFAE+ N F+ETSAL+S NVE AF +LT+IYR+VS+K +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 290 bits (742), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 138/169 (81%), Positives = 154/169 (91%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
WDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct: 83 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
K+DLRHLRAV T++A AFAE+ F+ETSAL+S NVE AF +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 288 bits (738), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 137/168 (81%), Positives = 153/168 (91%)
Query: 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDT
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
AGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+D
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
LRHLRAV T++A AFAE+ F+ETSAL+S NVE AF +LT+IYR+
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 288 bits (736), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/170 (80%), Positives = 154/170 (90%)
Query: 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
D+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIW
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
DTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
+DLRHLRAV T++A AFAE+ F+ETSAL+S NVE AF +LT+IYR+
Sbjct: 123 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 286 bits (733), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 137/169 (81%), Positives = 153/169 (90%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
WDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
K+DLRHLRAV T++A AFAE+ F+ETSAL+S NVE AF +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 283 bits (725), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 136/169 (80%), Positives = 152/169 (89%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
WDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVI LVGN
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
K+DLRHLRAV T++A AFAE+ F+ETSAL+S NVE AF +LT+IY
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 280 bits (715), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 134/167 (80%), Positives = 150/167 (89%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVI LVGNK+
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
DLRHLRAV T++A AFAE+ F+ETSAL+S NVE AF +LT+IY
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 268 bits (684), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 127/175 (72%), Positives = 155/175 (88%), Gaps = 1/175 (0%)
Query: 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQI 66
D YDYLFK+VLIGDSGVGKSNLLSRFTR+EF+LESKSTIGVEFAT+SI+ ++KI+KAQI
Sbjct: 2 DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
WDTAGQERYRAITSAYYRGAVGALLVYD+T+ +FEN+E+WLKELRD+ DSNIVI+LVGN
Sbjct: 62 WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
K+DL+HLR ++ DAT +A++E F+ETSALE+ NVE AF ++L +IY V +K
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 255 bits (652), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 121/215 (56%), Positives = 159/215 (73%), Gaps = 8/215 (3%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
DYD LFK+VLIGDSGVGKSNLLSRFT+NEF+++SKSTIGVEFATR++ + K +KAQIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQERYRAITSAYYRGAVGAL+VYD+++ ++EN WL ELR++ D N+ + L+GNK+
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGD- 187
DL HLRAV TE++ FA+ F ETSAL S NV+ AF E++ IY+ VS+ +++GD
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDS 188
Query: 188 ------DPAALPKGQTINV-GTKDDVSAVKKVGCC 215
+ A+ P G TI++ T ++ CC
Sbjct: 189 SANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 239 bits (611), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 115/177 (64%), Positives = 142/177 (80%)
Query: 5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
R +DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ VKA
Sbjct: 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
QIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+ VERWLKEL DH ++ IV+MLV
Sbjct: 77 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
GNK+DL R V TE+A FAE F+ETSAL+S NVE AF VL +I+ VS++
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 111/177 (62%), Positives = 143/177 (80%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
DYDYLFK+VLIGDSGVGKSNLLSRFT +EF++ESKSTIGVEFATR+I ++K +KAQIWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAG ERYRAITSAYYRGAVGAL+VYD+++ ++EN WL ELR++ D N+ + L+GNK+
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEI 185
DL HLRAV T++A FA F ETSAL S NV+ AF E++ I+++VS+ +++
Sbjct: 126 DLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDL 182
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 237 bits (604), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 114/174 (65%), Positives = 141/174 (81%)
Query: 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
+DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ VKAQIW
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
DTAG ERYRAITSAYYRGAVGALLV+D+T+H T+ VERWLKEL DH ++ IV+MLVGNK
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
+DL R V TE+A FAE F+ETSAL+S NVE AF VL +I+ VS++
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 119/176 (67%)
Query: 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
+G+ A +Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I +
Sbjct: 3 LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62
Query: 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
+K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR T+ ++ WL + R+ T+ N V
Sbjct: 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV 122
Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
I+L+GNKADL R V+ E+A FAE F+E SA NVE+AF E +IY+
Sbjct: 123 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 112/166 (67%)
Query: 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I D K +K QIWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
AGQE +R+IT +YYRGA GALLVYD+TR TF ++ WL++ R H++SN+VIML+GNK+D
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
L R V E+ AFA FMETSA + NVE AF +IY
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%)
Query: 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
YLFK ++IGD+GVGKS LL +FT F TIGVEF R + D K +K QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
QE +R+IT +YYRGA GALLVYD+TR TF ++ WL++ R H+ SN+VIML+GNK+DL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
R V E+ AFA FMETSA + NVE AF +IYR + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 115/171 (67%)
Query: 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ 65
A +Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I + +K Q
Sbjct: 23 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
IWDTAGQ R+RA+T +YYRGA GAL+VYD+TR T+ ++ WL + R+ T+ N VI+L+G
Sbjct: 83 IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
NKADL R V+ E+A FAE F+E SA NVE+AF E +IY+
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 131/207 (63%), Gaps = 4/207 (1%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
+YDYLFK++LIG+SGVGKS LL RF+ + ++ + STIGV+F +++ D K VK QIWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRG+ G ++VYDVT +F V+ WL+E+ + S ++ +LVGNK
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 188
DL+ R V + A FA+ F+ETSAL+S NVE+AF + QI +S++ L +
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL----N 179
Query: 189 PAALPKGQTINVGTKDDVSAVKKVGCC 215
K NV K GCC
Sbjct: 180 ETTQKKEDKGNVNLKGQSLTNTGGGCC 206
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 132/207 (63%), Gaps = 5/207 (2%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
+YDYLFK++LIG+SGVGKS LL RF+ + ++ + STIGV+F +++ D K VK QIWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRG+ G ++VYDVT +F V+ WL+E+ + S ++ +LVGNK
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 188
DL+ R V + A FA+ F+ETSAL+S NVE+AF + QI +S++ L +
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL----N 179
Query: 189 PAALPKGQTINVGTKDDVSAVKKVGCC 215
K NV K S GCC
Sbjct: 180 ETTQKKEDKGNVNLKGQ-SLTNTGGCC 205
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 172 bits (437), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 118/166 (71%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
+YDYLFK++LIG+SGVGKS LL RF+ + ++ + STIGV+F +++ D K VK QIWD
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRG+ G ++VYDVT +F V+ WL+E+ + S ++ +LVGNK
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL+ R V + A FA+ F+ETSAL+S NVE+AF + QI
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 170 bits (430), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 113/170 (66%)
Query: 5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
R +YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K
Sbjct: 17 RGSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 76
Query: 65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LV
Sbjct: 77 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 136
Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
GNK DL + V A FA+ F+ETSA + NVE +F + +I
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 169 bits (429), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 111/158 (70%)
Query: 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
YDYLFK++LIGDSGVGK+ +L RF+ + F+ STIG++F R+I D K +K QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
AGQER+R IT+AYYRGA+G +LVYD+T +F+N+ W++ + +H +++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
+ R VS E A FMETSA ++NVENAF
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 118/177 (66%), Gaps = 3/177 (1%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
+YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRGA G ++VYDVT ++ NV++WL+E+ + N+ +LVGNK+
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEI 185
DL + V A FA+ F+ETSA + NVE AF + +I + R LE+
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK---RMGLEV 178
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 114/170 (67%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
+ +YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K QI
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
K DL + V A FA+ F+ETSA + NVE +F + +I +
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 113/166 (68%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
+YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRGA G ++VYDVT ++ NV++WL+E+ + N+ +LVGNK+
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL + V A FA+ F+ETSA + NVE AF + +I
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 2 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI 61
G+ D+ YD+LFK+VL+GD+ VGK+ ++ RF FS STIGV+F +++ K
Sbjct: 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI 121
VK QIWDTAGQER+R IT +YYR A GA+L YD+T+ +F +V W++++R + SNIV
Sbjct: 78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137
Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENTFF-METSALESMNVENAFTEVLTQI 174
+L+GNK+DL LR VS +A + AE + +ETSA +S NVE AF V T++
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 112/166 (67%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
+YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K QIWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL + V A FA+ F+ETSA + NVE +F + +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 112/168 (66%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
+ +YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K QI
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGN
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
K DL + V A FA+ F+ETSA + NVE +F +I
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 113/168 (67%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
+ +YDYLFK++LIGDSGVGK+ LL RF + ++ STIGV+F R+I D K +K QI
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
K DL + V A FA+ F+ETSA + NVE +F + +I
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
DYLFK++LIGDSGVGK+ +L RF+ + F+ STIG++F R+I D K +K QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
GQER+R IT+AYYRGA+G +LVYD+T +F+N+ W++ + +H +++ M++GNK D+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R VS E A FMETSA ++NVENAF
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 160
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 166 bits (421), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 118/171 (69%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
+YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++K VK QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRGA G ++VYDVT +F+NV++W++E+ + N+ +LVGNK
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKC 124
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVS 179
DL R V++++ A+ F+ETSA + NVE AF + +I + V
Sbjct: 125 DLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 112/168 (66%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
+ +YDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K QI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVG
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
K DL + V A FA+ F+ETSA + NVE +F + +I
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 111/166 (66%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
+YD LFK++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K QIWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL + V A FA+ F+ETSA + NVE +F + +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 105/157 (66%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
D+LFK ++IG +G GKS LL +F N+F +S TIGVEF +R + K VK QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
GQER+R++T +YYRGA GALLVYD+T T+ ++ WL + R NIV++L GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V+ +A+ FA+ F+ETSAL NVE AF
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 113/182 (62%), Gaps = 4/182 (2%)
Query: 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
+ YD+LFK ++IG++G GKS LL +F +F +S TIGVEF ++ I K VK QIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
DTAGQER+R++T +YYRGA GALLVYD+T T+ + WL + R NIVI+L GNK
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGD 187
DL R V+ +A+ FA+ F+ETSAL NVE AF + +I + L
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL---- 180
Query: 188 DP 189
DP
Sbjct: 181 DP 182
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
DYD+LFK+++IGDSGVGKS+LL RF N FS +TIGV+F R++ + + VK QIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQER+R ITS YYRG G ++VYDVT +F NV+RWL E+ + D ++ +LVGNK
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 123
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
D + V TEDA FA + ETSA E++NVE F + + R
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 109/169 (64%)
Query: 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ 65
+ YD+LFK ++IG++G GKS LL +F +F +S TIGVEF ++ I K VK Q
Sbjct: 4 GSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 63
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
IWDTAGQER+R++T +YYRGA GALLVYD+T T+ + WL + R NIVI+L G
Sbjct: 64 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Query: 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
NK DL R V+ +A+ FA+ F+ETSAL +VE AF + +I
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 114/167 (68%)
Query: 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
+DYD+LFK+VLIG++GVGK+ L+ RFT+ F +TIGV+F +++ + + VK QIW
Sbjct: 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
DTAGQER+R+IT +YYR A +L YD+T +F + WL+E+ + + ++ +LVGNK
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL R VS + A F+E ++ +++ETSA ES NVE F ++ ++
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 160 bits (404), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 108/163 (66%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+S+ DD VK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T TF + W+KEL+ +IVI L GNKADL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
R V E+A A+A+ + FMETSA +MNV + F + ++ +
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 159 bits (403), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 110/163 (67%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+VL+GD G GKS+L+ RF +++F +STIG F ++++ +D VK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
Y ++ YYRGA A++V+DVT +FE ++W++EL+ + N+V+ L GNK+DL R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 135 AVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
V+ EDA +A+ FFMETSA + NV+ F E+ ++ RV
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 106/161 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T TF + W+KEL+ NIVI L GNKADL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
RAV ++A A+A+ + FMETSA +MNV F + ++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 108/167 (64%)
Query: 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
+ YD+LFK ++IG++G GKS LL +F +F +S TIGVEF ++ I K VK QIW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
DTAG ER+R++T +YYRGA GALLVYD+T T+ + WL + R NIVI+L GNK
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL R V+ +A+ FA+ F+ETSAL +VE AF + +I
Sbjct: 123 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
RAV ++A ++A+ + FMETSA SMNV F + ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
RAV ++A ++A+ + FMETSA SMNV F + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
RAV ++A ++A+ + FMETSA SMNV F + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
RAV ++A ++A+ + FMETSA SMNV F + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
RAV ++A ++A+ + FMETSA SMNV F + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
RAV ++A ++A+ + FMETSA SMNV F + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 156 bits (394), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
RAV ++A ++A+ + FMETSA SMNV F + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 105/161 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T TF + W+KEL+ NIVI L GNKADL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
RAV ++A A+A+ + FMETSA +MNV F + ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 105/161 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STI F T+++ DD VK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T TF + W+KEL+ NIVI L GNKADL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
RAV ++A A+A+ + FMETSA +MNV F + ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 107/162 (66%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK DL +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 135 AVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
V A FA+ F+ETSA + NVE +F + +I +
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 162
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 107/163 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
RAV ++A ++A+ + FMETSA SMNV F + ++ +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQI 66
D YD FKV+L+GDSGVGK+ LL RF F + ST+G++F + + D VK Q+
Sbjct: 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
WDTAGQER+R++T AYYR A LL+YDVT +F+N++ WL E+ ++ ++ +ML+GN
Sbjct: 65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
K D H R V ED A+ FMETSA +NV+ AFT + ++ R
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 105/161 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
KV L+GD+GVGKS+++ RF ++ F TIG F T+++ C +++ K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+ ++ YYRG+ A++VYD+T+ +F +++W+KEL++H NIV+ + GNK DL +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V +DA +AE +ETSA ++N+E F + QI
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+G+S VGKS+L+ RF + +F +STIG F T+++ DD VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
RAV ++A ++A+ + F ETSA S NV F + ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
YD + K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK Q+WDT
Sbjct: 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
AGQER+R IT+AYYRGA+G +LVYDVT TF N+++W K + +H + ++LVGNK+D
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY-RVVSRKALEIGD 187
+ R V+ + A A+ F+E+SA NV F + I ++ S K + +G+
Sbjct: 137 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGN 194
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
D + K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
GQER+R IT+AYYRGA+G +LVYD+T TF N+++W K + +H + ++LVGNK+D+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V+ + A A+ F+E+SA NV F
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 110/166 (66%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
++DY+FK+++IG+S VGK++ L R+ + F+ ST+G++F +++ +K VK QIWD
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQERYR IT+AYYRGA+G +L+YD+T +F V+ W +++ ++ N ++LVGNK
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
D+ R V TE AE+ F E SA E+++V AF ++ I
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 111/166 (66%)
Query: 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
++DY+FK+++IG+S VGK++ L R+ + F+ ST+G++F ++I +DK +K QIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
TAGQERYR IT+AYYRGA+G +L+YD+T +F V+ W +++ ++ N ++LVGNK
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
D+ R VS+E A+ F E SA +++NV+ F ++ I
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
KV L+GD+GVGKS+++ RF + F TIG F T++++ +++ K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+RA+ YYRG+ A++VYD+T+ TF ++ W++ELR H +IV+ + GNK DL +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V DA +A+ + F+ETSA ++N+ F E+ +I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
+ K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
ER+R IT+AYYRGA+G +LVYDVT TF N+++W K + +H + ++LVGNK+D+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V+ + A A+ F+E+SA NV F
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 160
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 106/164 (64%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
DY+FK++LIG+S VGK++ L R+ + F+ ST+G++F +++ DK +K QIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
GQERYR IT+AYYRGA+G LL+YD+ +F V+ W +++ ++ N ++LVGNK DL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V ED A+ F E SA E++NV+ F ++ I
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
D + K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
GQER+R IT+AYYRGA G +LVYD+T TF N+++W K + +H + ++LVGNK+D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V+ + A A+ F+E+SA NV F
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
D + K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
GQER+R IT+AYYRGA G +LVYDVT TF N+++W K + +H + ++LVGNK+D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V+ + A A+ F+E+SA NV F
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 103/161 (63%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
KV L+GD+GVGKS+++ RF + F TIG F T++++ +++ K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+RA+ YYRG+ A++VYD+T+ TF ++ W++ELR H +IV+ + GNK DL +
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V DA +A+ + F+ETSA ++N+ F E+ +I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
D+D K+++IG+SGVGKS+LL RFT + F E +TIGV+F ++I D K I
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVG 125
WDTAGQER+R +T +YYRGA G +LVYDVTR TF ++ WL EL + T ++IV LVG
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
NK D + R V + FA + + F+E SA V+ AF E++ +I +
Sbjct: 129 NKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 6/183 (3%)
Query: 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
+DY FK+++IG+S VGK++ L R+ + F+ ST+G++F ++I +DK +K QIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
AG ERYR IT+AYYRGA G +L YD+T +F V+ W +++ ++ N ++LVGNK D
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGD-- 187
R VS+E A+ F E SA +++NV+ F ++ V+ K E D
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD----VICEKXSESLDTA 180
Query: 188 DPA 190
DPA
Sbjct: 181 DPA 183
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 107/167 (64%), Gaps = 1/167 (0%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
D+ +V++IG GVGK++L+ RFT + F KST+GV+F +++ K ++ QIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
GQER+ +ITSAYYR A G +LVYD+T+ TF+++ +W+K + + + ++LVGNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 131 RHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIYR 176
R ++ + FA++ F E SA ++ NV+ F +++ I +
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 103/157 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+V +G+ VGK++L++RF + F ++TIG++F ++++ +D+ V+ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F +W+ ++R S+++IMLVGNK DL
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
R VSTE+ A+ N F+ETSA NV+ F V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 103/157 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+V +G+ VGK++L++RF + F ++TIG++F ++++ +D+ ++ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
R VS E+ A+ N F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 106/161 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V +G+ VGK+++++RF + F +STIG++F ++++ D+ V+ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +FEN +W++++ + +++I LVGNK DL L
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V+ E+ A+ NT F ETSA N++ F + +++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 103/157 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+V +G+ VGK++L++RF + F ++TIG++F ++++ +D+ V+ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
R VS E+ A+ N F+ETSA NV+ F V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 108/163 (66%), Gaps = 6/163 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ + DD++V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKA 128
ER++++ A+YRGA +LV+DVT TF+ ++ W L + N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEV 170
DL + R V+T+ A A+ + N + ETSA E++NVE AF +
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 108/163 (66%), Gaps = 6/163 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ + DD++V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKA 128
ER++++ A+YRGA +LV+DVT TF+ ++ W L + N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEV 170
DL + R V+T+ A A+ + N + ETSA E++NVE AF +
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 106/163 (65%), Gaps = 6/163 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ + DD++V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RDHTDSNIVIMLVGNKA 128
ER++++ A+YRGA +LV+DVT TF+ ++ W E N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEV 170
D + R V+T+ A A+ + N + ETSA E++NVE AF +
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 124/220 (56%), Gaps = 16/220 (7%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK------ 60
D DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + D +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61 ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT- 115
V Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 116 DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
N I+L+GNKADL R V+ A AE+ + ETSA NVE + +L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 176 RVVSRKALEIGDDPAALPKGQTINVGTKD-DVSAVKKVGC 214
+ + K +E P + G N G D + A KK C
Sbjct: 185 KRM-EKCVEKTQVPDTVNGG---NSGKLDGEKPAEKKCAC 220
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 84/115 (73%)
Query: 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
++LIGDSGVGKS LL RF + ++ STIGV+F R+I D K +K QIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 102/157 (64%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+V +G+ VGK++L++RF + F ++TIG++F ++++ +D+ ++ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
R VS E+ A+ N F+ETSA NV+ F V
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 110/183 (60%), Gaps = 11/183 (6%)
Query: 5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---- 60
R DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + + +
Sbjct: 17 RGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 76
Query: 61 ------IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH 114
V Q+WDTAGQER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +
Sbjct: 77 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136
Query: 115 TD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
N I+L+GNKADL R V+ A A++ + ETSA NVE A +L
Sbjct: 137 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196
Query: 174 IYR 176
I +
Sbjct: 197 IMK 199
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 102/157 (64%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+V +G+ VGK++L++RF + F ++TIG++F ++++ +D+ V+ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
R VS E+ A+ N F+ETSA NV+ F V
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 103/157 (65%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+V +G+ VGK++L++RF + F ++TIG++F ++++ +D+ V+ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
R ++ E+ A+ + F+ETSA NV+ F V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 102/157 (64%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+V +G+ VGK++L++RF + F ++TIG++F ++++ +D+ V+ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
R VS E+ A+ N F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ + DD++V QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKA 128
ER++++ A+YRGA +LV+DVT TF+ ++ W L + N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEV 170
DL + R V+T+ A A+ + N + ETSA E++NVE AF +
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK------ 60
D DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + D +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61 ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD 116
V Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
N I+L+GNKADL R V+ A AE+ + ETSA NVE + +L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 176 RVVSR 180
+ + +
Sbjct: 185 KRMEK 189
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
LFK++L+GD GVGKS+L++R+ N+F + TIGVEF + + D V QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKA 128
ER+R++ + +YRG+ LL + V +F+N+ W KE + D + +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 129 DLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
D++ R VSTE+A A+ + + + ETSA +S NV AF E + +I
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 101/163 (61%)
Query: 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
Y FKVVL+G+ VGK++L+ R+ N+F+ + +T+G F T+ + K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
QER+ A+ YYR + GA+LVYD+T +F+ V+ W+KELR + I + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS ++A ++AE TSA ++ +E F ++ ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 115/186 (61%), Gaps = 11/186 (5%)
Query: 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI--RCDD---- 59
+D DYDYL K + +GDSGVGK+++L ++T +F+ + +T+G++F + + R +
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 60 ----KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT 115
+ + Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+ H
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 116 DS-NIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
S N I+L GNK+DL RAV E+A AE+ + ETSA N+ +A +L I
Sbjct: 124 YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
Query: 175 YRVVSR 180
+ + R
Sbjct: 184 MKRMER 189
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+VL+G++ VGKS+++ RF N+F+ + TIG F T+ + ++ VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH-- 132
+ ++ YYR A AL+VYDVT+ +F W+KEL + +I+I LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 133 -LRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V+ E+ AE + F ETSA NV + F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 100/163 (61%)
Query: 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
Y FKVVL+G+ VGK++L+ R+ N+F+ + +T+ F T+ + K V IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
QER+ A+ YYR + GA+LVYD+T +F+ V+ W+KELR + I + +VGNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS ++A ++AE TSA ++ +E F ++ ++
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 6/167 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
LFKV+L+GD GVGKS+L++R+ N+F + TIGVEF + + D V QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKA 128
ER+R++ + +YRG+ LL + V +F+N+ W KE + D + +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 129 DLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
D+ R VSTE+A A+ + + ETSA ++ NV AF E + ++
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 100/163 (61%)
Query: 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
Y FKVVL+G+ VGK++L+ R+ N+F+ + +T+ F T+ + K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
QER+ A+ YYR + GA+LVYD+T +F+ V+ W+KELR + I + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS ++A ++AE TSA ++ +E F ++ ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 106/181 (58%), Gaps = 11/181 (6%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK------ 60
D DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + D +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61 ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD 116
V Q+WDTAG ER+R++T+A++R A G LL +D+T +F NV W +L+ +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
N I+L+GNKADL R V+ A AE+ + ETSA NVE + +L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 176 R 176
+
Sbjct: 185 K 185
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 6/167 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
LFKV+L+GD GVGKS+L++R+ N+F + TIGVEF + + D V QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKA 128
ER+R++ + +YRG+ LL + V +F+N+ W KE + D + +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 129 DLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
D+ R VSTE+A A+ + + ETSA ++ NV AF E + ++
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 104/170 (61%), Gaps = 6/170 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+L+GD GVGKS+L++R+ N+F ++ TIGVEF R + D + V QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKA 128
ER++++ + +YRGA LL + V +FEN+ W KE + D + +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVLTQIYRV 177
D + R V+TE+A + E + ++ETSA + NV AF E + Q+ V
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 106/181 (58%), Gaps = 11/181 (6%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK------ 60
D DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + D +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61 ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD 116
V Q+WDTAG ER+R++T+A++R A G LL +D+T +F NV W +L+ +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
N I+L+GNKADL R V+ A AE+ + ETSA NVE + +L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 176 R 176
+
Sbjct: 185 K 185
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 6/169 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+VL GD+ VGKS+ L R +NEF +T+GV+F +++ D + Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
R+R+I +Y+R A G LL+YDVT +F N+ W+ + D + IMLVGNKAD+R
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 134 RAVSTEDATA--FAER----ENTFFMETSALESMNVENAFTEVLTQIYR 176
A + F E+ F ETSA + N+ A + ++ +
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 105/166 (63%), Gaps = 9/166 (5%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAG 71
+ KV+++GDSGVGK++L+ R+ +++S + K+TIG +F T+ + D DK+ Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN----IVIMLVGNK 127
QER++++ A+YRGA +LVYDVT +FEN++ W E H + N +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 128 ADLRHLRAVSTEDAT---AFAERENTFFMETSALESMNVENAFTEV 170
D + + +E + A + + F+ TSA ++NV+ AF E+
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEI 172
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
+FK+++IGDS VGK+ L RF F +++TIGV+F R++ D + +K Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 73 ERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADL 130
ER+R ++ YYR + VYD+T +F ++ W++E + H +N I +LVGNK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 131 RHLRAVSTEDATAFAERENTFFMETSA 157
R V T+ A FA+ + ETSA
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSA 166
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
+FK+++IGDS VGK+ L RF F +++TIGV+F R++ D + +K Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 73 ERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADL 130
ER+R ++ YYR + VYD T +F ++ W++E + H +N I +LVGNK DL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 131 RHLRAVSTEDATAFAERENTFFMETSA 157
R V T+ A FA+ + ETSA
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSA 175
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K+V++G+ VGKS+++ R+ + F+ + K TIGV+F R I+ +D+ V+ +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
+ AIT AYYRGA +LV+ T +FE + W +++ +I LV NK DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
+ E+A A+R F TS E +NV F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
+Y + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + + F ++N + + SA + N E F L +++ LE PA P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 46/203 (22%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR----------------- 56
+K VL+G+S VGKS+++ R T++ F + +TIG F T +
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 57 -----------------------CDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93
C+ +K IWDTAGQERY +I YYRGA A++V+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCN---IKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124
Query: 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFM 153
D++ T + + W+ +L+ SN +I+LV NK D + V + +A+ N F+
Sbjct: 125 DISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFI 181
Query: 154 ETSALESMNVENAFTEVLTQIYR 176
+TSA N++N F + +IY+
Sbjct: 182 QTSAKTGTNIKNIFYMLAEEIYK 204
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + + F ++N + + SA + N E F L +++ LE PA P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + + F ++N + + SA + N E F L +++ LE PA P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + + F ++N + + SA + N E F L +++ LE PA P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++ +DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + + F ++N + + SA + N E F L +++ LE PA P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAXPALAP 184
Query: 194 K 194
Sbjct: 185 P 185
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 133
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + + F ++N + + SA + N E F L +++ LE PA P
Sbjct: 134 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 189
Query: 194 K 194
Sbjct: 190 P 190
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 121
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + + F ++N + + SA + N E F L +++ LE PA P
Sbjct: 122 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 177
Query: 194 K 194
Sbjct: 178 P 178
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI-VKAQIWDTAGQ 72
K+V++GD GK++L + F + F + K TIG++F R I + V QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKAD 129
+ Y GA G LLVYD+T + +FEN+E W +K++ + +++ ++ LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 130 LRHLRAVSTEDATAFAERENTF 151
L H+R + E F + EN F
Sbjct: 127 LEHMRTIKPEKHLRFCQ-ENGF 147
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +TIGVE S + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT +T++NV W ++L NI I+L GNK D++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 130
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + T F ++N + + SA + N E F L ++ LE PA P
Sbjct: 131 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPF---LWLARKLAGNPQLEFVASPALAP 186
Query: 194 K 194
Sbjct: 187 P 187
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V + + F ++N + + SA + N E F
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V + + F ++N + + SA + N E F
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V + + F ++N + + SA + N E F
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + + F ++N + + SA + N E F L +++ LE PA P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 3/166 (1%)
Query: 2 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI 61
G+ A + FK+VL+GD G GK+ + R EF + +T+GVE +
Sbjct: 1 GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 60
Query: 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI 121
+K +WDTAG E++ + YY A A++++DVT VT++NV W ++L NI I
Sbjct: 61 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPI 119
Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
+L GNK D++ R V + + F ++N + + SA + N E F
Sbjct: 120 VLCGNKVDIKD-RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +TIGVE S + +K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT +T++NV W ++L NI I+L GNK D++
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 123
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V + T F ++N + + SA + N E F
Sbjct: 124 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPF 156
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +TIGVE S + +K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT +T++NV W ++L NI I+L GNK D++
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 122
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V + T F ++N + + SA + N E F
Sbjct: 123 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPF 155
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R E + +T+GVE + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 133
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
R V + + F ++N + + SA + N E F L +++ LE PA P
Sbjct: 134 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 189
Query: 194 K 194
Sbjct: 190 P 190
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++G GVGKS L +F +EF + + T + + + D + V+ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS E+A AE+ N ++ETSA NV+ F +++ +I
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++G GVGKS L +F +EF +E + + + D + V+ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS E+A AE+ N ++ETSA NV+ F +++ +I
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++G GVGKS L +F +EF +E + + + D + V+ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS E+A AE+ N ++ETSA NV+ F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
FK+VL+GD G GK+ + R EF + +T+GVE + +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 124
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
R V + + F ++N + + SA + N E F
Sbjct: 125 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 157
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++G GVGKS L +F +EF + + T + + + D + V+ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS E+A A++ N ++ETSA NV+ F +++ +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 1/158 (0%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG-VEFATRSIRCDDKIVKAQIWDTAGQ 72
+K+ LIGD GVGK+ ++R F +T+G V + ++K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
E+ + YY GA GA+L +DVT +T +N+ RW+KE + + I++ NK D+++
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
+ +S + + +N + E SA + N F +
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 2/163 (1%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++G GVGKS L +F +EF +E + + + D + V+ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS E+A AE+ N ++ETSA NV+ F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++G GVGKS L +F +EF +E + + + D + V+ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSN-IVIMLVGNKADL 130
E Y AI Y+R G LLV+ +T H +F + ++ LR + + I +++VGNK+DL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V E+A + AE ++ETSA NV+ F +++ +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L KV+++G GVGKS L +F +EF + + T + + + D + V+ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSN-IVIMLVGNKADL 130
E Y AI Y+R G LLV+ +T H +F + ++ LR + + I +++VGNK+DL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V E+A + AE ++ETSA NV+ F +++ +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
KVV++G VGK++L +F EFS T+ ++ D+ + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEF-HLHLVDTAGQDE 84
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD-HTDSNIVIMLVGNKADLRHL 133
Y + ++ G G +LVY VT +F+ +E ++L + H + + ++LVGNKADL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
R V + AE FME+SA E+ + FT+V+ +I RV
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+ + G +GVGKS L+ RF F E T+ + ++ DD++V +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRH 132
+ R G +LVYD+T +FE V LK + D N+ ++LVGNKADL H
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDH 146
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
R VSTE+ A F E SA E TE+ ++ R V R+ +
Sbjct: 147 SRQVSTEEGEKLATELACAFYECSACTG---EGNITEIFYELCREVRRRRM 194
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L + +N F E TI + + + D + I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ + ++++ DS ++ ++LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V T+ A A F+ETSA V++AF ++ +I
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L + +N F E TI + + + D + I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ + ++++ DS ++ ++LVGNK+DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V T+ A A F+ETSA V++AF ++ +I
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F ++ F + TI + + + DD+ + I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 86 AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
G LLV+ VT +FE + ++ ++ LR ++L+GNKADL H R V+ E+
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 145 AERENTFFMETSALESMNVENAFTEVL 171
A + +ME SA MNV+ AF E++
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELV 163
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L +F + F E TI + + + D + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
++ A+ Y + G LVY +T TF +++ ++ LR ++ ++LVGNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 133 LRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEVLTQIYR 176
R V E A + N F+E+SA +NV F +++ QI R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L + +N F E TI + + + D + I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V + A A ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L + +N F E TI + + + D + I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V + A A ++ETSA VE+AF ++ +I
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L +F + F + TI + + + D + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
++ A+ Y + G LVY +T TF +++ ++ LR ++ ++LVGNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 133 LRAVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVLTQIYR 176
R V E A + N F+E+SA +NV F +++ QI R
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L + +N F E TI + + + D + I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V + A A ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L + +N F E TI + + + D + I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R V + A A ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L +F + F + TI + + + D + +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
++ A+ Y + G LVY +T TF +++ ++ LR ++ ++LVGNK DL
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 133 LRAVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVLTQIYR 176
R V E A + N F+E+SA +NV F +++ QI R
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 12/179 (6%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
K V +GD VGK+ +L +T N+F + T+ F+ ++ D +IV +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
E Y + YRGA +L + + ++ENV ++W+ ELR N+ I+LVG K DLR
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 126
Query: 132 --------HLRAV-STEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
H + ST+ + ++E S+ NV+ F + + + RK
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+K+V++G GVGKS L +F + F + TI + + + D + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
++ A+ Y + G LVY +T TF +++ ++ LR ++ ++LVGNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 133 LRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEVLTQIYR 176
R V E A + N F+E+SA +NV F +++ QI R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+ ++G VGKS+L +F +F + TI F T+ I + + Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHL 133
Y Y G +LVY VT +FE ++ +L D I IMLVGNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
R +S E+ A AE N F+E+SA E+ + F ++ +
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+ ++G VGKS+L +F +F TI F T+ I + + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHL 133
Y Y G +LVY VT +FE ++ +L D I IMLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
R +S E+ A AE N F+E+SA E+ + F ++ +
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y +L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+ ++G VGKS+L +F +F TI F T+ I + + Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHL 133
Y Y G +LVY VT +FE ++ +L D I IMLVGNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
R +S E+ A AE N F+E+SA E+ + F ++ + ++
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKI 165
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+ ++G VGKS+L +F +F TI F T+ I + + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHL 133
Y Y G +LVY VT +FE ++ +L D I IMLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
R +S E+ A AE N F+E+SA E+ + F ++ +
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y +L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y +L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y +L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + ++ENV +W E+R H S +I LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E ++ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
K V +GD VGK+ +L +T N F + T+ F+ ++ D V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
E Y + YRGA +L + + ++ENV ++W+ ELR H + I+LVG K DLR
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
K V +GD VGK+ +L +T N F + T+ F+ ++ D V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
E Y + YRGA LL + + ++EN+ ++WL EL+ H I I+LVG K DLR
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLR 123
Query: 132 --------HLRAVSTEDATAFAERE---NTFFMETSALESMNVENAF 167
H A S A R+ ++E S+ NV+ F
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + ++ENV +W E+R H S +I LVG K DLR
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 127
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E ++ ++E SAL ++ F E +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 179
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N FS E T+ ++ ++ D K V +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 132
Query: 132 ----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + ++ENV +W E+R H S +I LVG K DLR
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 128
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E ++ ++E SAL ++ F E +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIYR 176
L ++ A A+ ++E SAL ++ F E + + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
++V + G GVGKS+L+ RF + F T+ + + I CD I QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE---RWLKELRDHTDSNIVIMLVGNKADL 130
++ A+ +LVY +T + E ++ + E++ +S I IMLVGNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES-IPIMLVGNKCDE 121
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171
R V + +A A A FMETSA + NV+ F E+L
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F+++EF T+ E I D K V+ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V + EN+ E+W+ E++ H N+ I+LV NK DLR
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H+R V T+D A A R + ++E SA V F
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 81
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
KVVL+GD G GK++LL F F ES + E +++ K V IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + +Y A LL +DVT +F+N+ RW E+ +H + I++VG K DLR
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 132 -----HLRAVSTEDATAFAERE------NTFFMETSALESMNVENAFTE 169
LR E T +E ++E SA NV F E
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H + I+LVG K DLR
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E + ++E SAL ++ F E +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H + I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E + ++E SAL ++ F E +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 173
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H + I+LVG K DLR
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E + ++E SAL ++ F E +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
K V +GD VGK+ LL +T N F + T+ F+ ++ + V +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
E Y + YRGA +L + + ++ENV ++W+ EL+ H + I+LVG K DLR
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V +E+ A R + F ++E SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K VL+GD VGK++L+ +T N + E T F+ + D + V+ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH- 132
+ + Y LL + V +F+NV E+W+ E+R H I+LVG ++DLR
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 133 -----------LRAVSTEDATAFAER-ENTFFMETSALESMNVENAF 167
+ V E A AE + ++E SAL N++ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N E T+ ++ ++ D K V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V +E+ A R + F ++E SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 89
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 74 RYRAITSAYYRGAVGA-------------------LLVYDVTRHVTFENVE-RWLKELRD 113
Y + Y VG L+ + + +FENV +W E+R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 114 HTDSNIVIMLVGNKADLR------------HLRAVSTEDATAFAERENTF-FMETSALES 160
H N I+LVG K DLR L ++ A A+ ++E SAL
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 161 MNVENAFTEVL 171
++ F E +
Sbjct: 184 RGLKTVFDEAI 194
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F + F E TI + + D++ + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 86 AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
G L+VY VT +FE+V+R+ + LR + ++LV NK DL HLR V+ +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 145 AERENTFFMETSALE-SMNVENAFTEVL 171
A + N ++ETSA + +NV+ F +++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I D K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I D K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTR--NEFSLESKSTIGVEFATRSIRCDDKIVKAQIW--DTA 70
KV ++G++ VGKS L+S FT ++F + T GVE + D V +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNK 127
G + Y+ S Y+ G A+LV+DV+ +FE+ + W LK R + + +LV NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 128 ADLRHLR-AVSTEDATAFAERENTFFMETSA-LESMNVENAFTEVLTQIYR 176
DL R V + A +A F + SA + + F + T YR
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH 132
Y Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 123
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F + F E TI + + D++ + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 86 AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
G L+VY VT +FE+V+R+ + LR + ++LV NK DL HLR V+ +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 145 AERENTFFMETSALE-SMNVENAFTEVL 171
A + N ++ETSA + +NV+ F +++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
E Y + Y L+ + + +F +V +W E+R H N I+LVG K DLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 132 ------------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V +E+ A R + F ++E SA V F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
E Y + Y L+ + + +F +V +W E+R H N I+LVG K DLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 132 ------------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F + F + TI + + D++ + DTAGQE + A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 86 AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
G L+VY VT +FE+V+R+ + LR + ++LV NK DL HLR V+ +
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 145 AERENTFFMETSALE-SMNVENAFTEVL 171
A + N ++ETSA + +NV+ F +++
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLV 172
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
L K V++GD VGK+ LL +T N F E T+ ++ ++ D K V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
E Y + Y L+ + + +F +V +W E+R H N I+LVG K DLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 132 ------------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F + F + TI + + D++ + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 86 AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
G L+VY VT +FE+V+R+ + LR + ++LV NK DL HLR V+ +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 145 AERENTFFMETSALE-SMNVENAFTEVL 171
A + N ++ETSA + +NV+ F +++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 2/147 (1%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F ++ F + TI + T+ D + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 86 AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
G LLV+ + +F V + + LR + ++LVGNKADL R V +A+AF
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 145 AERENTFFMETSALESMNVENAFTEVL 171
+ + E SA +NV+ AF +++
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLV 167
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I D K V+ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
H R V E+ A R F +ME SA V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D +I I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
+ K V++GD VGK+ LL + + F E T+ +A S+ K ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
E Y + Y L+ + V +F+NV E W+ EL+++ N+ +L+G + DLR
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 132 ------------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVLTQI 174
+ + E A E ++E SAL ++ F E + I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
A ++ETSA VE+AF ++ +I + RK
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ + ++++ DS ++ ++LVGNK+DL R V T+ A
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A F+ETSA V++AF ++ +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ + ++++ DS ++ ++LVGNK+DL R V T+ A
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A F+ETSA V++AF ++ +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFT-RNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
L++VVL+GD GVGK++L S F + E L + +G + R++ D + + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 72 QERYRAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKA 128
E+ S + +G ++VY + +FE+ +LR H ++ I+LVGNKA
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
DL R VS E+ A A + F+ETSA NV F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK+DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 122
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 132
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +F ++ + ++++ DS+ V M LVGNK DL R V T+ A
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI--YRV 177
A+ F+ETSA VE+AF ++ +I YR+
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI E + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
A ++ETSA VE+AF ++ +I + RK
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
A ++ETSA VE+AF ++ +I + RK
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK+DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDK---IVKAQIWDT 69
++VVLIG+ GVGKS L + F S++S +G + R++ D + I+ +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIML 123
G+ + + AY L+VY +T +FE +LR + +I I+L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL R VS + A A + F+ETSA NV+ F ++ Q+
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E +I + + + D + I DTAGQE Y A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDK---IVKAQIWDT 69
++VVLIG+ GVGKS L + F S++S +G + R++ D + I+ +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 70 AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIML 123
G+ + + AY L+VY +T +FE +LR + +I I+L
Sbjct: 98 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL R VS + A A + F+ETSA NV+ F ++ Q+
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
D + + K+V++GDS GK+ LL F ++ F T+ E T S D + ++ +
Sbjct: 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 80
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVG 125
WDT+G Y + Y + L+ +D++R T ++V ++W E+++ N ++LVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 139
Query: 126 NKADLR-----------HLRAVSTEDATAFAERE--NTFFMETSALESMN 162
K+DLR H + + D A ++ ++E SAL+S N
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 16/162 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GDS GK+ LL F ++ F T+ E T S D + ++ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y + L+ +D++R T ++V ++W E+++ N ++LVG K+DLR
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126
Query: 132 ---------HLRAVSTEDATAFAERE--NTFFMETSALESMN 162
H + + D A ++ ++E SAL+S N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAG E Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ + ++++ DS ++ ++LVGNK DL R V T+ A
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A F+ETSA V++AF ++ +I
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
D + + K+V++GDS GK+ LL F ++ F T+ E T S D + ++ +
Sbjct: 17 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 75
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVG 125
WDT+G Y + Y + L+ +D++R T ++V ++W E+++ N ++LVG
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 134
Query: 126 NKADLR-----------HLRAVSTEDATAFAERE--NTFFMETSALESMN 162
K+DLR H + + D A ++ ++E SAL+S N
Sbjct: 135 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDK---IVKAQIWDT 69
++VVLIG+ GVGKS L + F S++S +G + R++ D + I+ +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIML 123
G+ + + AY L+VY +T +FE +LR + +I I+L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL R VS + A A + F+ETSA NV+ F ++ Q+
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDK---IVKAQIWDT 69
++VVLIG+ GVGKS L + F S++S +G + R++ D + I+ +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKA 128
G+ + + + L+VY +T +FE +LR + +I I+LVGNK+
Sbjct: 67 KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL R VS + A A + F+ETSA NV+ F ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ + + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGN+ DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAF 167
A ++ETSA VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E +I + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E + +A ++ + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
K+ L + +N F E TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F + TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F + TI + + + D + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+ E T+ +A ++ + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAG+E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ + ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
+ ++ E A A + + ++E SAL ++N F E +
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAG E Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS+L+ RF + F TI + + I CD + QI DT G ++ A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 86 AVGALLVYDVTRHVTFEN---VERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT 142
+LV+ VT + E + + + +++ + +I +MLVGNK D R V T +A
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCDETQ-REVDTREAQ 137
Query: 143 AFAERENTFFMETSALESMNVENAFTEVLT 172
A A+ FMETSA + NV+ F E+LT
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L + +N F E TI + + + D + I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL R V + A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
A ++ETSA VE+AF ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F F + TI +F + I D +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTED 140
G +LVY + +F+++ K +RD + ++LVGNK DL R VS+ +
Sbjct: 75 GQGFILVYSLVNQQSFQDI----KPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSE 130
Query: 141 ATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
A AE FMETSA V+ F E++ Q+
Sbjct: 131 GRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
++KV+L+G GVGKS L F E E+++ G + RSI D + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD--HTDSNIVIMLVGNKADL 130
+ R + ++VY VT +FE +LR TD ++ I+LVGNK+DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 123
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS ++ A A + F+ETSA NV+ F V+ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
++KV+L+G GVGKS L F E E+++ G + RSI D + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD--HTDSNIVIMLVGNKADL 130
+ R + ++VY VT +FE +LR TD ++ I+LVGNK+DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 123
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS ++ A A + F+ETSA NV+ F V+ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
++KV+L+G GVGKS L F E E+++ G + RSI D + ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 59
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD--HTDSNIVIMLVGNKADL 130
+ R + ++VY VT +FE +LR TD ++ I+LVGNK+DL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 118
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
R VS ++ A A + F+ETSA NV+ F V+ QI
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K+V++GD VGK+ LL F++ E T+ F + ++ ++ +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
Y + Y + LL + V +F+N+ +W E++ + D+ + LVG K DLR
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 140
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
K+V++GD VGK+ LL F++ E T+ F + ++ ++ +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
Y + Y + LL + V +F+N+ +W E++ + D+ + LVG K DLR
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 139
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+VL+GD GK+ +L ++ + T+ E T + +++ V+ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y + LL +D++R T ++ +++W E+ D+ S V +L+G K DLR
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 146
Query: 132 --------HLR--AVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYRVVSR 180
H + +S E A A++ ++E SA S + + I+R S
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTASM 199
Query: 181 KALEIGDDPAALPKGQTI 198
L + P+ LP+ +
Sbjct: 200 LCL---NKPSPLPQKSPV 214
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+VL+GD GK+ +L ++ + E+ E T + +++ V+ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y + LL +D++R T ++ +++W E+ D+ S V +L+G K DLR
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 130
Query: 132 --------HLR--AVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYRVVSR 180
H + +S E A A++ ++E SA S + + I+R S
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTASM 183
Query: 181 KALEIGDDPAALPKGQTI 198
L + P+ LP+ +
Sbjct: 184 LCL---NKPSPLPQKSPV 198
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+VL+GD GK+ +L ++ + E+ E T + +++ V+ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y + LL +D++R T ++ +++W E+ D+ S V +L+G K DLR
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 129
Query: 132 --------HLR--AVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYRVVSR 180
H + +S E A A++ ++E SA S + + I+R S
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTASM 182
Query: 181 KALEIGDDPAALPKGQTI 198
L + P+ LP+ +
Sbjct: 183 LCL---NKPSPLPQKSPV 197
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++ +F T+ E + D + V+ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
Y + Y + L+ + + + ENV E+W+ E+ H + I+LVG K DLR
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 132 -----HLR-----AVSTEDATAFAEREN-TFFMETSALESMNVENAF 167
LR V++++ + A++ T + E SA V F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 12/171 (7%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---IVKAQIW 67
D +FKV+L+G+SGVGKS L F + + + R I D + +V IW
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 68 ---DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIML 123
D G R + + L+V+ VT +F V L LR ++ ++L
Sbjct: 81 EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL R VS E+ A + +ETSA N F + QI
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTR----NEFSLESKSTIGVEFATRSIRCDDK---IVK 63
D +FKV+L+G+SGVGKS L F N +E+ + R I D + ++
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSE----DTYERRIMVDKEEVTLIV 65
Query: 64 AQIW---DTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDS 117
IW D G Q+ A+ L+V+ VT +F V L LR
Sbjct: 66 YDIWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHH 118
Query: 118 NIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
++ ++LVGNK+DL R VS E+ A + +ETSA N F + QI
Sbjct: 119 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---IVKAQIW-- 67
+FKV+L+G+SGVGKS L F + + + R I D + ++ IW
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 68 -DTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIML 123
D G Q+ A+ L+V+ VT +F V L LR ++ ++L
Sbjct: 62 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL R VS E+ A + +ETSA N F + QI
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
+ ++G G GKS L +F F E + +++ D + V ++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH---TDSNIVIMLVGNKADLRH 132
R Y A L+VY V +F++ +L+ L H T +I +L+GNK D+
Sbjct: 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 133 LRAVSTEDATAFAERENTFFMETSA-LESMNVENAFTEVLTQIYR 176
R V+ + A A R F E SA L+ +V++ F E + + R
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 1 MGAYRADDDYDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI 55
MG Y A + LF +++++G G GK+ +L + E + + TIG T
Sbjct: 1 MGLY-ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET--- 55
Query: 56 RCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDH 114
K + +WD GQ+R R++ YYR G + V D R E E + L +
Sbjct: 56 -VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNED 114
Query: 115 TDSNIVIMLVGNKADLRHLRAVS--TEDATAFAERENTFFMETSALES 160
N V ++ NK DL + + TE + R +F++++ S
Sbjct: 115 ELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATS 162
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
++ L+G GK+ ++ +FS + T+G F R + + +K IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
R+R++ Y RG + + D E L L D I ++++GNK DL +
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 133 L----RAVSTEDATAFAERE 148
+ + + +A +RE
Sbjct: 139 ALDEKQLIEKMNLSAIQDRE 158
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
++ L+G GK+ ++ +F+ + T+G F R I + +K +WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 78
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
R+R++ Y RG + + D E + L L D I ++++GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL-- 136
Query: 133 LRAVSTEDATAFAERENTFFMETSALE 159
A E+E M SA++
Sbjct: 137 --------PGALDEKELIEKMNLSAIQ 155
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + + S+ + T+G T + K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 377
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
+ R + YY G G + V D + + L + D + +I++ NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
++ L+G GK+ ++ +F+ + T+G F R I + +K +WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADL 130
R+R++ Y RG + + D E + L L D I ++++GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + + S+ + T+G T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 55
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
+ R + YY G G + V D + + L + D + +I++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + + S+ + T+G T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 55
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
+ R + YY G G + V D + + L + D + +I++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + + S+ + T+G T + K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
+ R + YY G G + V D + + L + D + +I++ NK DL
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + + S+ + T+G T + K VK +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
+ R + YY G G + V D + + L + D + +I++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+++L + E + + TIG T + K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
+ R + YY+ + V D R E E +K L + N ++++ NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 133 LRAVS--TEDATAFAERENTFFMETSA 157
++S TE + ++ +TS
Sbjct: 133 AMSISEVTEKLGLQTIKNRKWYCQTSC 159
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK------ELRDHTDSNIVIMLVGNK 127
R R + Y++ G + V D + V L+ ELRD V++L NK
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDA-----VLLLFANK 127
Query: 128 ADLRHLRAVS--TEDATAFAERENTFFMETSA 157
DL + A+S T+ + R T++++ +
Sbjct: 128 QDLPNAMAISEMTDKLGLQSLRNRTWYVQATC 159
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G G GK+ +L + E + + TIG T K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
R R++ YYR G + V D R E E + L + N ++ NK DL
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 133 LRAVS--TEDATAFAERENTFFMETSALES 160
+ + TE + R +F++ + S
Sbjct: 116 AMSAAEITEKLGLHSIRNRPWFIQATCATS 145
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G G GK+ +L + E + + TIG T K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
R R++ YYR G + V D R E E + L + N ++ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
Query: 133 LRAVS--TEDATAFAERENTFFMETSALES 160
+ + TE + R +F++ + S
Sbjct: 133 AMSAAEITEKLGLHSIRNRPWFIQATCATS 162
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
+++ +G GK+ +L + + S+ + T+G T + K VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
R + YY G G + V D + + L + D + +I++ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFS-LESKS-TIGVEFATRSIRCDDKIVK---AQIWDT 69
K+ ++G++G GK+ LL + + + S L +S T+G++ I+ DK + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
AG+E + + + L VYD+++ + + WL ++ S+ VI LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 129 DL 130
D+
Sbjct: 121 DV 122
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFS-LESKS-TIGVEFATRSIRCDDKIVK---AQIWDT 69
K+ ++G++G GK+ LL + + + S L +S T+G++ I+ DK + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
AG+E + + + L VYD+++ + + WL ++ S+ VI LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 129 DL 130
D+
Sbjct: 123 DV 124
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + + S+ + T+G T + K VK +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 57
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
+ R + YY G G + V D + + L + D + +I++ NK DL
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 115
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + + S+ + T+G T + K VK +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 58
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
+ R + YY G G + V D + + L + D + +I++ NK DL
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 116
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
+ R + Y++ G + V D R E+ + K L++ + V+++ NK D+ +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 133 LRAVS 137
VS
Sbjct: 145 AMPVS 149
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + + S+ + T+G T + K VK +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
+ R + YY G G + V D + + L + D + +I++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR-CDDKIVKAQIWDTAGQ 72
+++++G G GK+ +L + E + + TIG F ++ C+ + +WD GQ
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQYCN---ISFTVWDVGGQ 71
Query: 73 ERYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
+R R++ YY G + V D R E E + L + N ++ NK DL
Sbjct: 72 DRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLP 131
Query: 132 HLRAVS--TEDATAFAERENTFFMETSALES 160
+ + TE + R +F++ + S
Sbjct: 132 EAMSAAEITEKLGLHSIRNRPWFIQATCATS 162
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
+ R + Y++ G + V D R E E ++ L + + V+++ NK DL
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
+ R + Y++ G + V D R E E ++ L + + V+++ NK DL
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
+ R + Y++ G + V D R E E ++ L + + V+++ NK DL
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
+ R + Y++ G + V D R E E ++ L + + V+++ NK DL
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G G GK+ +L R E + +K TIG T S K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQT 73
Query: 74 RYRAITSAYYRGAVGALLVYDVT 96
R YY + V D T
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDST 96
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T R + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVETVEFRN----ISFTVWDVGGQDK 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHL 133
R + YY G + V D ++ L + + + + +I++ NK DL +
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNA 133
Query: 134 RAVS--TEDATAFAERENTFFMETSA 157
+ + TE RE +F++++
Sbjct: 134 MSAAEVTEKLHLNTIRERNWFIQSTC 159
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS------IRCDDKIVKA--Q 65
KV LIGD GK++LL + F + T G+ T+ + DD++ +
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
WD GQE A + + +L+ D T N WL+ + + + VI +V
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPVI-VVM 157
Query: 126 NKAD 129
NK D
Sbjct: 158 NKID 161
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L +F + S T+G T R K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKTLEHRG----FKLNIWDVGGQK 71
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKADL 130
R+ Y+ G + V D ++ +R L+ L + + +++ NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ---IWDTAG 71
KV+++G GK+ +L +F NE + + TIG ++ +VK +WD G
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNV-------EEIVVKNTHFLMWDIGG 69
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADL 130
QE R+ + YY +LV D + L + H D +++ NK D+
Sbjct: 70 QESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDM 129
Query: 131 R 131
+
Sbjct: 130 K 130
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
KV+++G GK+ +L +F+ NE + + TIG I + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINN----TRFLMWDIGGQES 77
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV-GNKADLRHL 133
R+ + YY ++V D T L ++ H D +L+ NK D++
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 134 RAVS 137
V+
Sbjct: 138 MTVA 141
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
KV+++G GK+ +L +F+ NE + + TIG I + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINN----TRFLMWDIGGQES 78
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV-GNKADLRHL 133
R+ + YY ++V D T L ++ H D +L+ NK D++
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 134 RAVS 137
V+
Sbjct: 139 MTVA 142
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L +F + S T+G T R K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKTLEHRG----FKLNIWDVGGQK 73
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKADL 130
R+ Y+ G + V D ++ +R L+ L + + +++ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L +F + S T+G T R K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKTLEHRG----FKLNIWDVGGQK 73
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKADL 130
R+ Y+ G + V D ++ +R L+ L + + +++ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
+ R + Y++ G + V D R E + + L + + V+++ NK DL
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 133
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T + K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
+ R + Y++ G + V D R E E ++ L + + V+++ NK DL
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 115
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
KV+++G GK+ +L +F+ NE + + TIG I + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINN----TRFLMWDIGGQES 72
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV-GNKADLRHL 133
R+ + YY ++V D T L ++ H D +L+ NK D++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 134 RAVS 137
V+
Sbjct: 133 MTVA 136
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
KV+++G GK+ +L +F+ NE + + TIG I + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINN----TRFLMWDIGGQES 72
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV-GNKADLRHL 133
R+ + YY ++V D T L ++ H D +L+ NK D++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 134 RAVS 137
V+
Sbjct: 133 MTVA 136
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 16 VVLIGDSGVGKSNLLSRF-TRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
V+ +G GK+ ++++ N S TIG F+ + + ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGR 79
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLR 131
YR + YY+ + V D + + + L L +H D I I+ NK DLR
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G G GK+ +L R E + + TIG T + K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVTY----KNLKFQVWDLGGQT 57
Query: 74 RYRAITSAYYRGAVGALLVYD 94
R YY + V D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVD 78
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 13/176 (7%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
++ ++GD+ GKS+L+ RF + + K+ E + + D + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVG--NKA 128
A + + A + V+ + +F+ V R L LR + + LVG ++
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 129 DLRHLRAVSTEDATAF-AERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
R V A A A+ + + ET A +NV+ F EV ++ + ++ L
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 17/131 (12%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESK---STIGVEFATRSIRCDDKIVKAQIWDTAG 71
K++L+G SG GKS++ S N + +++ +TI VE + + + +WD G
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCGG 64
Query: 72 Q----ERYRAITSAYYRGAVGALL-VYDVTRHVTFENVE---RWLKELRDHT-DSNIVIM 122
Q E Y + V L+ V+DV +++E + LK+LR ++ D+ I ++
Sbjct: 65 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 124
Query: 123 LVGNKADLRHL 133
L +K DL L
Sbjct: 125 L--HKMDLVQL 133
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 7 DDDYDYL--FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS 44
D+ DYL F +L G SGVGKS++LSR T E + S
Sbjct: 157 DELVDYLEGFICILAGPSGVGKSSILSRLTGEELRTQEVS 196
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 13/176 (7%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
++ ++GD+ GKS+L+ RF + + K+ E + + D + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVG--NKA 128
A + + A + V+ + +F+ V R L LR + + LVG ++
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 129 DLRHLRAVSTEDATAF-AERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
R V A A A+ + + ET A +NV+ F EV ++ + ++ L
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 25 GKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR 84
GK+ +L +F + S T+G T R K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLGFNIKTLEHRG----FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 85 GAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKADL 130
G + V D ++ +R L+ L + + +++ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
YR ++ G V L + ++ H+ E + ++ D D N++ +VG LR L
Sbjct: 500 YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLT 559
Query: 135 AVSTEDATAFAERENTFF 152
+DA AF F
Sbjct: 560 HAFDDDARAFCRSRMQFL 577
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
YR ++ G V L + ++ H+ E + ++ D D N++ +VG LR L
Sbjct: 500 YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLT 559
Query: 135 AVSTEDATAFAERENTFF 152
+DA AF F
Sbjct: 560 HAFDDDARAFCRSRMQFL 577
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
+++++G G GK+ +L R E + + TIG T + K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVTY----KNLKFQVWDLGGLT 59
Query: 74 RYRAITSAYYRGAVGALLVYD 94
R YY + V D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVD 80
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
+++++G G GK+ +L R E + + TIG T + K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVTY----KNLKFQVWDLGGLTS 63
Query: 75 YRAITSAYYRGAVGALLVYD 94
R YY + V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
D +++L+G GK+ LL + + S T G F +S++ K +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIG 69
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKAD 129
GQ + R +Y+ + V D FE + + L + S + +++ NK D
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 129
Query: 130 L 130
L
Sbjct: 130 L 130
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
D +++L+G GK+ LL + + S T G F +S++ K +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIG 68
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKAD 129
GQ + R +Y+ + V D FE + + L + S + +++ NK D
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 130 L 130
L
Sbjct: 129 L 129
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 15 KVVLIGDSGVGKSNLLS-----RFTRNEFSLESKS---TI-GVEFATRSIRCDDKIVKAQ 65
K+V +G GK+ LL R ++ +L S TI G+ F T
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT------------- 83
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLV 124
+D G E+ R + Y G + + D H + L L D T SN+ I+++
Sbjct: 84 -FDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILIL 142
Query: 125 GNKAD 129
GNK D
Sbjct: 143 GNKID 147
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
+++L+G GK+ LL + + S + + F +S++ K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQ---GFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADL 130
R +Y+ + V D FE + + L + S + +++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
Length = 277
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R VS++ ++ DP+A+ K Q
Sbjct: 223 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 252
>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|B Chain B, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|C Chain C, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|D Chain D, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
Length = 279
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R VS++ ++ DP+A+ K Q
Sbjct: 225 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 254
>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3OD5|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3OD5|B Chain B, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3S70|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
pdb|3S70|C Chain C, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
Length = 278
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R VS++ ++ DP+A+ K Q
Sbjct: 222 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 251
>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|B Chain B, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|C Chain C, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|D Chain D, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
Length = 299
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R VS++ ++ DP+A+ K Q
Sbjct: 245 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 274
>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|B Chain B, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|C Chain C, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|D Chain D, Crystal Structure Of Ligand Free Human Caspase-6
Length = 293
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R VS++ ++ DP+A+ K Q
Sbjct: 245 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 274
>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen
pdb|3NR2|B Chain B, Crystal Structure Of Caspase-6 Zymogen
Length = 294
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R VS++ ++ DP+A+ K Q
Sbjct: 238 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 267
>pdb|3P45|B Chain B, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|D Chain D, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|F Chain F, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|H Chain H, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|J Chain J, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|L Chain L, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|N Chain N, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|P Chain P, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
Length = 108
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R VS++ ++ DP+A+ K Q
Sbjct: 53 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 82
>pdb|3P4U|B Chain B, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
pdb|3P4U|D Chain D, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
Length = 108
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R VS++ ++ DP+A+ K Q
Sbjct: 53 FTELLTLVNRKVSQRRVDFXKDPSAIGKKQ 82
>pdb|3QNW|B Chain B, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|D Chain D, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|F Chain F, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|H Chain H, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
Length = 100
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R VS++ ++ DP+A+ K Q
Sbjct: 52 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 81
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI---GVEFATRSIRCDDKIVKAQIWDTA 70
F ++++G +GVGK+ + + R +F + KS + G F ++ + Q+W
Sbjct: 294 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 343
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENV 104
GQ R A + GA A +++D + N+
Sbjct: 344 GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNI 376
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 15 KVVLIGDSGVGKSNLLS-----RFTRNEFSLESKS---TI-GVEFATRSIRCDDKIVKAQ 65
K+V +G GK+ LL R ++ +L S TI G+ F T
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT------------- 70
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLV 124
+D G + R + Y G + + D H E+ E + D T +N+ I+++
Sbjct: 71 -FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 129
Query: 125 GNKAD 129
GNK D
Sbjct: 130 GNKID 134
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI---GVEFATRSIRCDDKIVKAQIWDTA 70
F ++++G +GVGK+ + + R +F + KS + G F ++ + Q+W
Sbjct: 100 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 149
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE 105
GQ R A + GA A +++D + N++
Sbjct: 150 GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNID 183
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI---GVEFATRSIRCDDKIVKAQIWDTA 70
F ++++G +GVGK+ + + R +F + KS + G F ++ + Q+W
Sbjct: 94 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVWG-- 144
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE 105
+R A + GA A +++D + N++
Sbjct: 145 --QRNNIPVIAQHTGADSASVIFDAIQAAKARNID 177
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI---GVEFATRSIRCDDKIVKAQIWDTA 70
F ++++G +GVGK+ + + R +F + KS + G F ++ + Q+W
Sbjct: 99 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 148
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE 105
GQ R A + GA A +++D + N++
Sbjct: 149 GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNID 182
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
+++L+G GK+ LL + + S + + F +S++ K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQ---GFNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADL 130
R +Y+ + V D FE + + L + S + +++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 15 KVVLIGDSGVGKSNLLS-----RFTRNEFSLESKS---TI-GVEFATRSIRCDDKIVKAQ 65
K+V +G GK+ LL R ++ +L S TI G+ F T
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT------------- 73
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLV 124
+D G + R + Y G + + D H E+ E + D T +N+ I+++
Sbjct: 74 -FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 132
Query: 125 GNKAD 129
GNK D
Sbjct: 133 GNKID 137
>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation
pdb|3V6L|B Chain B, Crystal Structure Of Caspase-6 Inactivation Mutation
Length = 282
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R V ++ ++ DP+A+ K Q
Sbjct: 226 FTELLTLVNRKVEQRRVDFCKDPSAIGKKQ 255
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 12 YLFKVVLIGD--SGVGKSNLLSRFTRNEFSLESKSTIG 47
++F VV+IG SG+ + LLS + N LE++ +G
Sbjct: 20 HMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVG 57
>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|B Chain B, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|C Chain C, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|D Chain D, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|F Chain F, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|G Chain G, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|I Chain I, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|J Chain J, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
Length = 279
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R V ++ ++ DP+A+ K Q
Sbjct: 223 FTELLTLVNRKVEQRRVDFCKDPSAIGKKQ 252
>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|B Chain B, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|C Chain C, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|D Chain D, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|E Chain E, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|F Chain F, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|G Chain G, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|H Chain H, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
Length = 277
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYRVVSRKALEIGDDPAALPKGQ 196
FTE+LT + R V ++ ++ DP+A+ K Q
Sbjct: 223 FTELLTLVNRKVDQRRVDFCKDPSAIGKKQ 252
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 15 KVVLIGDSGVGKSNLLS-----RFTRNEFSLESKS---TI-GVEFATRSIRCDDKIVKAQ 65
K+V +G GK+ LL R ++ +L S TI G+ F T
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT------------- 64
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLV 124
+D G + R + Y G + + D H E+ E + D T +N+ I+++
Sbjct: 65 -FDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 123
Query: 125 GNKAD 129
GNK D
Sbjct: 124 GNKID 128
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA---QIWDTA 70
++V++G VGKS LL+R + ++ + TR + ++ +++ +I DTA
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI----VTDIPGTTRDVISEEIVIRGILFRIVDTA 299
Query: 71 G 71
G
Sbjct: 300 G 300
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
+VV+ G GK+ ++++ + S + +T+G T + V ++D G
Sbjct: 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGA 73
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD 116
+++R + YY + V D + H+ V+ ++ + H D
Sbjct: 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHED 117
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS 44
F ++++G SG+GKS L++ +++ S ++ S
Sbjct: 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASS 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,825,462
Number of Sequences: 62578
Number of extensions: 208841
Number of successful extensions: 1499
Number of sequences better than 100.0: 370
Number of HSP's better than 100.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 373
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)