Query 027856
Match_columns 217
No_of_seqs 144 out of 1849
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 5.9E-42 1.3E-46 241.4 21.9 202 7-216 3-205 (205)
2 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.5E-40 7.7E-45 234.7 21.7 210 7-216 8-222 (222)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1.2E-40 2.5E-45 234.1 18.7 198 11-216 3-200 (200)
4 KOG0080 GTPase Rab18, small G 100.0 2.3E-39 4.9E-44 220.5 19.4 170 8-177 6-176 (209)
5 KOG0098 GTPase Rab2, small G p 100.0 4.3E-39 9.2E-44 224.5 20.4 172 10-181 3-174 (216)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.9E-39 1.3E-43 225.6 20.0 170 10-179 19-189 (221)
7 PLN03110 Rab GTPase; Provision 100.0 6.2E-38 1.3E-42 235.4 26.6 209 5-216 4-215 (216)
8 KOG0078 GTP-binding protein SE 100.0 3.4E-38 7.4E-43 225.6 22.7 176 6-181 5-180 (207)
9 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.3E-37 4.9E-42 230.3 24.3 195 14-215 1-201 (201)
10 cd04120 Rab12 Rab12 subfamily. 100.0 2.7E-36 5.8E-41 223.4 24.1 164 14-177 1-165 (202)
11 KOG0394 Ras-related GTPase [Ge 100.0 3.3E-37 7.1E-42 214.7 17.5 171 10-180 6-183 (210)
12 cd04121 Rab40 Rab40 subfamily. 100.0 3.6E-36 7.9E-41 220.7 23.8 168 10-178 3-170 (189)
13 KOG0088 GTPase Rab21, small G 100.0 2.6E-37 5.6E-42 210.1 14.8 213 4-216 4-217 (218)
14 KOG0079 GTP-binding protein H- 100.0 4.5E-37 9.9E-42 206.6 14.8 170 9-179 4-173 (198)
15 cd04110 Rab35 Rab35 subfamily. 100.0 1.8E-35 3.9E-40 219.6 24.9 196 11-215 4-199 (199)
16 cd04125 RabA_like RabA-like su 100.0 1.8E-35 4E-40 217.9 24.3 187 14-217 1-187 (188)
17 cd04112 Rab26 Rab26 subfamily. 100.0 2E-35 4.3E-40 218.1 23.1 190 14-215 1-191 (191)
18 cd04126 Rab20 Rab20 subfamily. 100.0 1.8E-35 3.9E-40 221.3 22.8 187 14-215 1-220 (220)
19 cd04144 Ras2 Ras2 subfamily. 100.0 1.7E-35 3.6E-40 218.4 21.5 185 15-215 1-188 (190)
20 KOG0095 GTPase Rab30, small G 100.0 5.5E-36 1.2E-40 201.8 16.6 206 8-216 2-210 (213)
21 cd04109 Rab28 Rab28 subfamily. 100.0 6.5E-35 1.4E-39 219.1 23.1 164 14-177 1-168 (215)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.6E-34 3.5E-39 217.4 24.9 176 1-178 1-191 (232)
23 cd04122 Rab14 Rab14 subfamily. 100.0 1.2E-34 2.7E-39 209.4 23.1 164 13-176 2-165 (166)
24 KOG0093 GTPase Rab3, small G p 100.0 2.2E-35 4.8E-40 198.2 17.1 174 7-180 15-188 (193)
25 PLN03108 Rab family protein; P 100.0 4.5E-34 9.8E-39 213.7 25.9 169 11-179 4-172 (210)
26 PTZ00369 Ras-like protein; Pro 100.0 1.2E-34 2.6E-39 213.6 21.8 166 12-178 4-170 (189)
27 KOG0091 GTPase Rab39, small G 100.0 2.8E-35 6E-40 201.2 16.6 179 10-188 5-186 (213)
28 cd01867 Rab8_Rab10_Rab13_like 100.0 2.9E-34 6.2E-39 207.7 23.1 166 11-176 1-166 (167)
29 KOG0086 GTPase Rab4, small G p 100.0 4.9E-35 1.1E-39 197.9 17.3 184 7-190 3-186 (214)
30 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3E-34 6.6E-39 209.6 21.8 163 11-175 3-180 (182)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.2E-34 9E-39 207.6 21.8 165 13-178 2-167 (172)
32 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-33 2.4E-38 204.2 23.3 162 14-175 2-163 (165)
33 cd04133 Rop_like Rop subfamily 100.0 4E-34 8.7E-39 207.7 20.5 159 14-174 2-172 (176)
34 cd04117 Rab15 Rab15 subfamily. 100.0 9E-34 1.9E-38 203.8 21.8 160 14-173 1-160 (161)
35 cd04111 Rab39 Rab39 subfamily. 100.0 2.5E-33 5.4E-38 209.7 24.8 170 13-182 2-173 (211)
36 cd01866 Rab2 Rab2 subfamily. 100.0 2.2E-33 4.7E-38 203.2 23.5 166 11-176 2-167 (168)
37 PF00071 Ras: Ras family; Int 100.0 1.4E-33 3.1E-38 202.9 22.2 161 15-175 1-161 (162)
38 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.9E-33 4.1E-38 203.1 22.9 163 13-175 2-164 (166)
39 cd04131 Rnd Rnd subfamily. Th 100.0 9.5E-34 2.1E-38 206.5 21.3 161 13-175 1-176 (178)
40 cd04127 Rab27A Rab27a subfamil 100.0 2.3E-33 5.1E-38 205.2 23.1 167 11-177 2-179 (180)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 1.8E-33 4E-38 203.2 22.1 162 14-175 1-167 (168)
42 cd01868 Rab11_like Rab11-like. 100.0 2.6E-33 5.6E-38 202.2 22.5 163 12-174 2-164 (165)
43 cd01875 RhoG RhoG subfamily. 100.0 3.7E-33 8.1E-38 205.9 22.1 161 13-175 3-177 (191)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.5E-33 7.7E-38 204.3 21.6 163 14-177 1-168 (182)
45 cd01864 Rab19 Rab19 subfamily. 100.0 6.5E-33 1.4E-37 200.1 22.4 162 12-173 2-164 (165)
46 cd04118 Rab24 Rab24 subfamily. 100.0 1.1E-32 2.3E-37 203.9 24.0 164 14-178 1-169 (193)
47 cd04113 Rab4 Rab4 subfamily. 100.0 7.2E-33 1.6E-37 199.1 21.7 160 14-173 1-160 (161)
48 PLN03071 GTP-binding nuclear p 100.0 1E-32 2.2E-37 207.4 23.0 165 11-178 11-175 (219)
49 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2E-32 4.4E-37 205.0 23.0 162 14-177 2-178 (222)
50 PLN03118 Rab family protein; P 100.0 6E-32 1.3E-36 202.6 25.6 171 6-177 7-179 (211)
51 smart00175 RAB Rab subfamily o 100.0 2.2E-32 4.8E-37 197.0 22.4 163 14-176 1-163 (164)
52 cd04132 Rho4_like Rho4-like su 100.0 2E-32 4.4E-37 201.5 22.3 165 14-180 1-172 (187)
53 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.1E-32 2.4E-37 200.7 20.6 160 13-174 1-174 (175)
54 cd04136 Rap_like Rap-like subf 100.0 1.2E-32 2.7E-37 198.2 20.4 160 14-174 2-162 (163)
55 cd04106 Rab23_lke Rab23-like s 100.0 2.9E-32 6.4E-37 196.0 21.5 159 14-173 1-161 (162)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.3E-32 1.1E-36 196.2 22.8 162 15-176 2-166 (170)
57 cd00877 Ran Ran (Ras-related n 100.0 4.5E-32 9.7E-37 195.9 21.5 160 14-176 1-160 (166)
58 cd04175 Rap1 Rap1 subgroup. T 100.0 3.8E-32 8.3E-37 195.9 20.8 161 14-175 2-163 (164)
59 cd01861 Rab6 Rab6 subfamily. 100.0 6.6E-32 1.4E-36 194.0 21.7 160 14-173 1-160 (161)
60 KOG0097 GTPase Rab14, small G 100.0 3.8E-32 8.1E-37 181.9 18.8 179 10-188 8-186 (215)
61 cd01860 Rab5_related Rab5-rela 100.0 1.2E-31 2.5E-36 193.1 22.7 162 13-174 1-162 (163)
62 cd04116 Rab9 Rab9 subfamily. 100.0 9.6E-32 2.1E-36 194.9 22.4 162 11-173 3-169 (170)
63 cd04176 Rap2 Rap2 subgroup. T 100.0 4.7E-32 1E-36 195.2 20.2 160 14-174 2-162 (163)
64 cd04124 RabL2 RabL2 subfamily. 100.0 9.9E-32 2.1E-36 193.2 21.6 160 14-177 1-160 (161)
65 cd04140 ARHI_like ARHI subfami 100.0 7.7E-32 1.7E-36 194.6 20.8 158 14-172 2-162 (165)
66 smart00176 RAN Ran (Ras-relate 100.0 1.1E-31 2.3E-36 198.6 21.6 171 19-195 1-171 (200)
67 cd01871 Rac1_like Rac1-like su 100.0 8.4E-32 1.8E-36 195.8 20.7 158 14-173 2-173 (174)
68 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.9E-31 4E-36 193.5 22.2 162 13-174 2-168 (170)
69 smart00173 RAS Ras subfamily o 100.0 1.3E-31 2.7E-36 193.1 20.8 161 14-175 1-162 (164)
70 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2E-31 4.2E-36 192.1 21.6 161 13-174 2-163 (164)
71 cd04134 Rho3 Rho3 subfamily. 100.0 1.2E-31 2.5E-36 197.7 20.0 160 14-175 1-174 (189)
72 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3E-31 6.4E-36 190.6 21.4 159 14-174 2-161 (162)
73 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.1E-31 1.1E-35 190.0 22.2 160 14-174 1-163 (164)
74 cd04142 RRP22 RRP22 subfamily. 100.0 2.3E-31 4.9E-36 197.0 20.8 165 14-178 1-177 (198)
75 cd04123 Rab21 Rab21 subfamily. 100.0 6.8E-31 1.5E-35 188.7 22.6 161 14-174 1-161 (162)
76 cd01862 Rab7 Rab7 subfamily. 100.0 9E-31 2E-35 190.0 22.5 165 14-178 1-170 (172)
77 KOG0081 GTPase Rab27, small G 100.0 9.7E-33 2.1E-37 188.0 10.3 197 7-204 3-209 (219)
78 cd04143 Rhes_like Rhes_like su 100.0 8.4E-31 1.8E-35 199.7 21.2 160 14-174 1-170 (247)
79 cd01873 RhoBTB RhoBTB subfamil 100.0 7.4E-31 1.6E-35 193.7 19.8 158 13-173 2-194 (195)
80 smart00174 RHO Rho (Ras homolo 100.0 7.5E-31 1.6E-35 190.9 19.4 158 16-175 1-172 (174)
81 cd04114 Rab30 Rab30 subfamily. 100.0 4.9E-30 1.1E-34 185.7 23.6 164 11-174 5-168 (169)
82 cd01863 Rab18 Rab18 subfamily. 100.0 2.3E-30 5E-35 186.0 21.6 159 14-173 1-160 (161)
83 cd01892 Miro2 Miro2 subfamily. 100.0 9.7E-31 2.1E-35 189.4 18.9 162 12-175 3-166 (169)
84 cd00154 Rab Rab family. Rab G 100.0 3.3E-30 7.1E-35 184.2 21.4 158 14-171 1-158 (159)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 2.9E-30 6.2E-35 186.9 21.2 161 14-175 2-164 (168)
86 cd04148 RGK RGK subfamily. Th 100.0 2.6E-30 5.7E-35 194.6 21.2 165 14-180 1-168 (221)
87 cd04146 RERG_RasL11_like RERG/ 100.0 1.3E-30 2.9E-35 188.1 18.2 160 15-175 1-164 (165)
88 cd04103 Centaurin_gamma Centau 100.0 2.5E-30 5.5E-35 185.1 19.4 153 14-173 1-157 (158)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5.8E-30 1.2E-34 186.2 20.6 157 14-172 1-171 (173)
90 cd04135 Tc10 TC10 subfamily. 100.0 5.2E-30 1.1E-34 186.5 20.0 159 14-174 1-173 (174)
91 cd04139 RalA_RalB RalA/RalB su 100.0 6.1E-29 1.3E-33 178.9 21.7 161 14-175 1-162 (164)
92 cd00876 Ras Ras family. The R 100.0 3.4E-29 7.3E-34 179.5 20.1 158 15-173 1-159 (160)
93 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.9E-31 4.1E-36 176.7 7.4 162 17-178 1-163 (192)
94 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 9E-29 1.9E-33 181.4 20.4 165 13-180 3-175 (183)
95 cd04149 Arf6 Arf6 subfamily. 100.0 5.3E-29 1.1E-33 180.1 17.7 154 12-172 8-167 (168)
96 cd04137 RheB Rheb (Ras Homolog 100.0 2.8E-28 6E-33 178.4 21.6 164 14-178 2-166 (180)
97 cd01870 RhoA_like RhoA-like su 100.0 2.6E-28 5.5E-33 177.7 20.8 159 14-174 2-174 (175)
98 cd04129 Rho2 Rho2 subfamily. 100.0 1.9E-28 4.1E-33 180.3 20.1 163 14-178 2-176 (187)
99 cd04147 Ras_dva Ras-dva subfam 100.0 1.6E-28 3.5E-33 182.2 20.0 160 15-175 1-163 (198)
100 smart00177 ARF ARF-like small 100.0 1.6E-28 3.4E-33 178.8 18.8 157 11-174 11-173 (175)
101 cd04158 ARD1 ARD1 subfamily. 100.0 1.2E-28 2.5E-33 178.6 18.0 156 15-177 1-163 (169)
102 PLN00223 ADP-ribosylation fact 100.0 2.3E-28 5E-33 178.8 19.2 159 11-176 15-179 (181)
103 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2E-29 4.4E-34 181.7 13.0 153 15-172 1-163 (164)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.9E-28 4.2E-33 175.7 18.1 152 14-172 1-158 (159)
105 cd04102 RabL3 RabL3 (Rab-like3 100.0 7.9E-28 1.7E-32 177.9 21.2 147 14-160 1-175 (202)
106 PTZ00132 GTP-binding nuclear p 100.0 1.2E-27 2.7E-32 179.7 22.6 177 7-189 3-179 (215)
107 KOG0395 Ras-related GTPase [Ge 100.0 3.1E-28 6.6E-33 178.8 18.3 166 12-178 2-168 (196)
108 cd00157 Rho Rho (Ras homology) 100.0 8.7E-28 1.9E-32 174.2 19.9 157 14-172 1-170 (171)
109 PTZ00133 ADP-ribosylation fact 100.0 1E-27 2.2E-32 175.5 19.5 159 12-177 16-180 (182)
110 cd01893 Miro1 Miro1 subfamily. 100.0 1.4E-27 3.1E-32 172.4 18.8 160 14-176 1-165 (166)
111 cd04154 Arl2 Arl2 subfamily. 100.0 1.1E-27 2.5E-32 174.1 18.0 156 10-172 11-172 (173)
112 KOG0393 Ras-related small GTPa 100.0 2.3E-28 4.9E-33 175.9 12.2 164 11-176 2-180 (198)
113 cd04157 Arl6 Arl6 subfamily. 100.0 3.1E-27 6.7E-32 169.8 17.2 152 15-172 1-161 (162)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.5E-26 3.2E-31 168.3 17.9 153 13-172 15-173 (174)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.4E-27 7.4E-32 170.6 14.3 151 15-172 1-166 (167)
116 PTZ00099 rab6; Provisional 100.0 4.4E-26 9.5E-31 165.6 19.6 142 36-177 3-144 (176)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.1E-26 2.4E-31 166.7 15.9 152 15-172 1-159 (160)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2E-26 4.3E-31 166.5 16.8 152 15-172 1-166 (167)
119 cd00879 Sar1 Sar1 subfamily. 99.9 4.4E-26 9.5E-31 168.1 18.1 155 12-173 18-189 (190)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2E-26 4.3E-31 165.0 15.2 151 15-172 1-157 (158)
121 PLN00023 GTP-binding protein; 99.9 9.1E-26 2E-30 174.7 19.3 143 9-151 17-190 (334)
122 cd04151 Arl1 Arl1 subfamily. 99.9 8.3E-26 1.8E-30 161.9 17.9 151 15-172 1-157 (158)
123 KOG4252 GTP-binding protein [S 99.9 4.8E-28 1E-32 168.3 5.5 175 5-180 12-186 (246)
124 smart00178 SAR Sar1p-like memb 99.9 1E-25 2.2E-30 165.4 18.0 156 11-173 15-183 (184)
125 PF00025 Arf: ADP-ribosylation 99.9 1.1E-25 2.3E-30 163.7 17.8 157 11-174 12-175 (175)
126 cd01890 LepA LepA subfamily. 99.9 2.2E-25 4.7E-30 162.9 17.3 154 15-174 2-176 (179)
127 cd01897 NOG NOG1 is a nucleola 99.9 2.1E-25 4.6E-30 161.2 16.3 156 14-174 1-167 (168)
128 PRK12299 obgE GTPase CgtA; Rev 99.9 7.8E-25 1.7E-29 173.1 18.8 164 13-177 158-330 (335)
129 cd04159 Arl10_like Arl10-like 99.9 1.4E-24 3.1E-29 155.0 18.3 151 16-172 2-158 (159)
130 cd01898 Obg Obg subfamily. Th 99.9 3.6E-25 7.9E-30 160.3 15.2 157 15-173 2-169 (170)
131 COG1100 GTPase SAR1 and relate 99.9 5.1E-24 1.1E-28 160.5 21.9 169 13-181 5-191 (219)
132 KOG0073 GTP-binding ADP-ribosy 99.9 3.3E-24 7.1E-29 147.1 18.2 161 10-177 13-180 (185)
133 TIGR00231 small_GTP small GTP- 99.9 2.6E-24 5.5E-29 153.4 18.7 158 13-171 1-160 (161)
134 cd01878 HflX HflX subfamily. 99.9 8.8E-25 1.9E-29 163.0 16.2 156 11-173 39-203 (204)
135 cd04155 Arl3 Arl3 subfamily. 99.9 2E-24 4.2E-29 157.0 17.2 159 7-172 8-172 (173)
136 cd04171 SelB SelB subfamily. 99.9 3.2E-24 7E-29 154.3 17.1 152 14-172 1-163 (164)
137 TIGR02528 EutP ethanolamine ut 99.9 2.3E-24 5E-29 151.7 13.3 134 15-171 2-141 (142)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.8E-23 3.8E-28 151.1 16.7 157 15-175 2-166 (168)
139 PF02421 FeoB_N: Ferrous iron 99.9 6.7E-24 1.5E-28 149.1 13.6 148 14-170 1-156 (156)
140 cd00882 Ras_like_GTPase Ras-li 99.9 6E-23 1.3E-27 145.0 18.2 153 18-171 1-156 (157)
141 PRK04213 GTP-binding protein; 99.9 5E-24 1.1E-28 158.5 11.8 155 9-176 5-193 (201)
142 TIGR03156 GTP_HflX GTP-binding 99.9 4.7E-23 1E-27 164.2 18.0 155 11-173 187-350 (351)
143 TIGR02729 Obg_CgtA Obg family 99.9 5.2E-23 1.1E-27 162.7 17.8 160 13-174 157-328 (329)
144 cd01879 FeoB Ferrous iron tran 99.9 5.3E-23 1.2E-27 147.1 15.9 148 18-174 1-156 (158)
145 TIGR00436 era GTP-binding prot 99.9 5.1E-23 1.1E-27 159.5 16.7 153 15-174 2-163 (270)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 3.4E-23 7.3E-28 153.2 14.4 148 14-165 3-172 (194)
147 PRK03003 GTP-binding protein D 99.9 1.3E-22 2.9E-27 168.3 18.5 183 12-200 210-416 (472)
148 KOG0070 GTP-binding ADP-ribosy 99.9 8.3E-23 1.8E-27 143.7 14.3 159 10-175 14-178 (181)
149 cd01881 Obg_like The Obg-like 99.9 6.7E-23 1.4E-27 149.1 13.3 155 18-173 1-175 (176)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.4E-22 5.1E-27 143.4 14.7 146 14-174 2-156 (157)
151 PF08477 Miro: Miro-like prote 99.9 1.7E-22 3.8E-27 137.9 13.0 114 15-129 1-119 (119)
152 PRK15494 era GTPase Era; Provi 99.9 4.2E-22 9.2E-27 158.5 16.8 155 11-175 50-216 (339)
153 cd01889 SelB_euk SelB subfamil 99.9 2.8E-22 6E-27 148.1 14.5 158 14-175 1-186 (192)
154 cd00881 GTP_translation_factor 99.9 5E-22 1.1E-26 146.1 15.5 154 15-174 1-186 (189)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1E-21 2.2E-26 160.9 18.8 154 11-178 201-363 (442)
156 PRK12297 obgE GTPase CgtA; Rev 99.9 2E-21 4.4E-26 157.4 20.0 160 13-177 158-329 (424)
157 TIGR01393 lepA GTP-binding pro 99.9 8.8E-22 1.9E-26 166.5 18.5 157 13-175 3-180 (595)
158 PRK03003 GTP-binding protein D 99.9 4.2E-22 9E-27 165.4 16.2 155 12-176 37-200 (472)
159 PRK11058 GTPase HflX; Provisio 99.9 6.5E-22 1.4E-26 161.1 16.9 161 13-179 197-366 (426)
160 TIGR03594 GTPase_EngA ribosome 99.9 1.3E-21 2.9E-26 161.3 18.6 160 11-177 170-346 (429)
161 KOG1673 Ras GTPases [General f 99.9 2.9E-22 6.2E-27 136.4 11.9 168 9-177 16-188 (205)
162 PRK12296 obgE GTPase CgtA; Rev 99.9 2.1E-21 4.5E-26 159.3 18.3 165 12-179 158-344 (500)
163 cd01894 EngA1 EngA1 subfamily. 99.9 4.5E-22 9.8E-27 142.0 12.7 146 17-173 1-156 (157)
164 KOG0075 GTP-binding ADP-ribosy 99.9 3.5E-22 7.5E-27 134.7 10.9 157 13-175 20-182 (186)
165 PRK05291 trmE tRNA modificatio 99.9 1.1E-21 2.3E-26 161.5 16.1 149 12-176 214-371 (449)
166 PRK00454 engB GTP-binding prot 99.9 4.3E-21 9.4E-26 142.1 17.4 159 9-174 20-193 (196)
167 PRK15467 ethanolamine utilizat 99.9 1.8E-21 3.8E-26 139.2 14.4 140 15-177 3-149 (158)
168 KOG0071 GTP-binding ADP-ribosy 99.9 3.3E-21 7.2E-26 129.0 14.4 156 12-174 16-177 (180)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 2.1E-21 4.6E-26 144.4 14.6 159 14-174 1-198 (203)
170 TIGR03598 GTPase_YsxC ribosome 99.9 3.8E-21 8.2E-26 140.5 15.1 149 9-164 14-179 (179)
171 COG1159 Era GTPase [General fu 99.9 2.4E-21 5.2E-26 146.5 14.3 161 12-177 5-174 (298)
172 TIGR00487 IF-2 translation ini 99.9 7.7E-21 1.7E-25 160.1 18.7 153 12-172 86-247 (587)
173 PRK12298 obgE GTPase CgtA; Rev 99.9 8E-21 1.7E-25 153.1 18.0 163 13-177 159-335 (390)
174 cd04163 Era Era subfamily. Er 99.9 7.8E-21 1.7E-25 136.6 15.8 156 13-173 3-167 (168)
175 PRK00089 era GTPase Era; Revie 99.9 7.6E-21 1.7E-25 149.2 16.6 158 13-175 5-171 (292)
176 cd01895 EngA2 EngA2 subfamily. 99.9 2.1E-20 4.6E-25 135.3 17.7 155 13-173 2-173 (174)
177 TIGR00475 selB selenocysteine- 99.9 1.3E-20 2.7E-25 159.3 18.2 154 14-176 1-167 (581)
178 CHL00189 infB translation init 99.9 2.4E-20 5.1E-25 159.5 18.7 157 11-174 242-409 (742)
179 PF00009 GTP_EFTU: Elongation 99.9 1.2E-20 2.7E-25 138.8 14.0 160 12-175 2-187 (188)
180 KOG3883 Ras family small GTPas 99.9 4.1E-20 8.8E-25 125.6 14.8 167 12-179 8-179 (198)
181 COG1160 Predicted GTPases [Gen 99.9 3.4E-20 7.3E-25 147.6 16.3 184 12-201 177-386 (444)
182 PRK00093 GTP-binding protein D 99.9 3.8E-20 8.3E-25 152.8 16.9 159 11-177 171-346 (435)
183 TIGR03594 GTPase_EngA ribosome 99.9 2.4E-20 5.3E-25 153.8 15.7 151 15-176 1-161 (429)
184 PRK05433 GTP-binding protein L 99.9 5.6E-20 1.2E-24 155.7 18.0 159 11-175 5-184 (600)
185 PRK00093 GTP-binding protein D 99.9 6.1E-20 1.3E-24 151.6 17.5 148 14-172 2-159 (435)
186 PRK05306 infB translation init 99.9 7.5E-20 1.6E-24 157.7 18.6 155 10-173 287-450 (787)
187 TIGR00437 feoB ferrous iron tr 99.8 3.4E-20 7.3E-25 156.9 15.9 146 20-174 1-154 (591)
188 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 4.5E-21 9.8E-26 134.8 8.3 179 11-195 8-186 (216)
189 PRK09518 bifunctional cytidyla 99.8 2.8E-19 6E-24 155.0 21.2 157 12-176 449-622 (712)
190 COG1160 Predicted GTPases [Gen 99.8 2.9E-20 6.2E-25 148.1 13.7 151 14-175 4-165 (444)
191 PRK09518 bifunctional cytidyla 99.8 1E-19 2.2E-24 157.7 17.9 157 10-176 272-437 (712)
192 cd00880 Era_like Era (E. coli 99.8 5.5E-20 1.2E-24 131.0 13.4 151 18-173 1-162 (163)
193 cd01896 DRG The developmentall 99.8 2.9E-19 6.3E-24 135.4 17.5 151 15-174 2-225 (233)
194 PRK09554 feoB ferrous iron tra 99.8 2.4E-19 5.3E-24 155.2 18.2 153 13-174 3-167 (772)
195 KOG0076 GTP-binding ADP-ribosy 99.8 3.1E-20 6.8E-25 128.8 9.5 160 12-177 16-189 (197)
196 KOG4423 GTP-binding protein-li 99.8 3.9E-22 8.4E-27 139.7 -0.6 191 10-206 22-219 (229)
197 COG2229 Predicted GTPase [Gene 99.8 1.8E-18 3.9E-23 121.7 17.3 156 12-173 9-176 (187)
198 TIGR00491 aIF-2 translation in 99.8 6.5E-19 1.4E-23 148.3 17.4 157 13-176 4-217 (590)
199 cd04105 SR_beta Signal recogni 99.8 5.4E-19 1.2E-23 131.4 15.0 117 15-132 2-123 (203)
200 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.2E-18 4.7E-23 127.0 16.7 148 13-164 2-172 (195)
201 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.4E-19 7.3E-24 133.1 12.5 149 15-166 1-185 (208)
202 cd01876 YihA_EngB The YihA (En 99.8 1.4E-18 3E-23 125.1 14.9 152 15-173 1-169 (170)
203 TIGR00483 EF-1_alpha translati 99.8 7E-19 1.5E-23 144.7 14.7 157 10-168 4-200 (426)
204 COG2262 HflX GTPases [General 99.8 2E-18 4.3E-23 135.7 16.3 172 9-187 188-368 (411)
205 PRK10218 GTP-binding protein; 99.8 3.2E-18 7E-23 144.6 18.3 160 12-175 4-195 (607)
206 TIGR01394 TypA_BipA GTP-bindin 99.8 1.1E-18 2.5E-23 147.4 15.4 158 14-175 2-191 (594)
207 PRK12317 elongation factor 1-a 99.8 5.7E-19 1.2E-23 145.2 13.2 155 11-168 4-198 (425)
208 KOG1423 Ras-like GTPase ERA [C 99.8 2.6E-18 5.6E-23 129.9 15.2 166 6-175 65-271 (379)
209 TIGR03680 eif2g_arch translati 99.8 1.6E-18 3.5E-23 141.4 14.5 161 11-174 2-195 (406)
210 PF10662 PduV-EutP: Ethanolami 99.8 2.5E-18 5.4E-23 118.4 13.0 135 15-171 3-142 (143)
211 PRK10512 selenocysteinyl-tRNA- 99.8 5.6E-18 1.2E-22 143.9 18.0 155 15-174 2-165 (614)
212 KOG0074 GTP-binding ADP-ribosy 99.8 8.5E-19 1.8E-23 117.7 10.3 157 10-172 14-176 (185)
213 COG0486 ThdF Predicted GTPase 99.8 2.5E-18 5.5E-23 137.4 14.8 154 12-177 216-378 (454)
214 PRK04000 translation initiatio 99.8 2.8E-18 6E-23 140.0 14.9 163 9-174 5-200 (411)
215 COG0218 Predicted GTPase [Gene 99.8 1.5E-17 3.3E-22 119.6 16.2 160 8-175 19-197 (200)
216 cd04168 TetM_like Tet(M)-like 99.8 8.5E-18 1.8E-22 127.6 15.8 113 15-131 1-129 (237)
217 PRK04004 translation initiatio 99.8 1E-17 2.2E-22 141.6 17.3 157 12-175 5-218 (586)
218 cd04167 Snu114p Snu114p subfam 99.8 5.2E-18 1.1E-22 127.2 13.1 113 15-131 2-136 (213)
219 PRK12736 elongation factor Tu; 99.8 1.4E-17 3.1E-22 135.3 16.6 148 10-161 9-179 (394)
220 PRK12735 elongation factor Tu; 99.8 3E-17 6.4E-22 133.6 16.6 149 10-162 9-180 (396)
221 cd01883 EF1_alpha Eukaryotic e 99.8 1.1E-17 2.3E-22 126.0 12.7 147 15-164 1-194 (219)
222 KOG1707 Predicted Ras related/ 99.8 3.8E-18 8.3E-23 138.7 10.7 168 6-175 2-175 (625)
223 KOG1489 Predicted GTP-binding 99.8 2E-17 4.4E-22 125.7 13.6 156 13-172 196-364 (366)
224 TIGR00485 EF-Tu translation el 99.8 3.1E-17 6.8E-22 133.5 15.8 148 10-161 9-179 (394)
225 COG0370 FeoB Fe2+ transport sy 99.8 2.9E-17 6.2E-22 136.6 15.4 155 13-176 3-165 (653)
226 KOG0072 GTP-binding ADP-ribosy 99.8 1.5E-18 3.2E-23 116.9 6.2 160 10-176 15-180 (182)
227 COG1084 Predicted GTPase [Gene 99.7 9.4E-17 2E-21 122.9 15.1 156 12-173 167-334 (346)
228 CHL00071 tufA elongation facto 99.7 1.5E-16 3.3E-21 130.0 16.7 150 10-163 9-181 (409)
229 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.5E-16 3.2E-21 119.7 14.7 153 15-171 1-219 (224)
230 cd04104 p47_IIGP_like p47 (47- 99.7 1.6E-16 3.5E-21 117.7 14.6 161 13-180 1-189 (197)
231 COG1163 DRG Predicted GTPase [ 99.7 1.9E-16 4E-21 120.9 14.8 157 11-176 61-290 (365)
232 cd04169 RF3 RF3 subfamily. Pe 99.7 3.4E-16 7.3E-21 120.8 16.3 115 14-132 3-137 (267)
233 cd01850 CDC_Septin CDC/Septin. 99.7 2.7E-16 5.8E-21 121.9 15.2 143 12-159 3-186 (276)
234 cd01885 EF2 EF2 (for archaea a 99.7 1.5E-16 3.2E-21 119.3 12.8 113 15-131 2-138 (222)
235 PRK00049 elongation factor Tu; 99.7 1.1E-15 2.3E-20 124.5 17.1 149 10-162 9-180 (396)
236 PRK05124 cysN sulfate adenylyl 99.7 3.1E-16 6.7E-21 130.0 14.1 154 10-166 24-216 (474)
237 cd01886 EF-G Elongation factor 99.7 2.2E-16 4.7E-21 122.0 12.2 114 15-132 1-130 (270)
238 PLN03126 Elongation factor Tu; 99.7 6.3E-16 1.4E-20 127.8 15.7 150 10-163 78-250 (478)
239 cd04170 EF-G_bact Elongation f 99.7 1E-16 2.3E-21 124.2 10.2 146 15-169 1-167 (268)
240 TIGR02034 CysN sulfate adenyly 99.7 4.8E-16 1E-20 126.9 14.3 149 14-165 1-187 (406)
241 PF01926 MMR_HSR1: 50S ribosom 99.7 1.9E-15 4.1E-20 102.5 14.2 106 15-127 1-116 (116)
242 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.4E-15 5.2E-20 111.4 15.1 159 14-176 1-185 (196)
243 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 5.1E-16 1.1E-20 116.4 11.4 161 15-178 1-179 (232)
244 COG0532 InfB Translation initi 99.7 5.5E-15 1.2E-19 120.0 18.1 159 12-177 4-172 (509)
245 COG0536 Obg Predicted GTPase [ 99.7 1.4E-15 3E-20 117.1 13.8 166 13-179 159-337 (369)
246 PLN03127 Elongation factor Tu; 99.7 2.5E-15 5.4E-20 123.5 16.1 160 10-173 58-250 (447)
247 KOG0462 Elongation factor-type 99.7 9E-16 1.9E-20 124.2 12.9 162 10-175 57-235 (650)
248 cd01899 Ygr210 Ygr210 subfamil 99.7 1.8E-15 4E-20 118.9 14.4 81 16-96 1-110 (318)
249 PTZ00141 elongation factor 1- 99.7 2.5E-15 5.4E-20 123.7 15.7 151 11-165 5-203 (446)
250 PRK00741 prfC peptide chain re 99.7 2.6E-15 5.7E-20 125.6 16.0 117 11-131 8-144 (526)
251 PRK13351 elongation factor G; 99.7 1.3E-15 2.8E-20 132.2 14.7 119 8-132 3-139 (687)
252 PRK05506 bifunctional sulfate 99.7 2.1E-15 4.6E-20 129.6 15.1 154 9-165 20-211 (632)
253 PLN00043 elongation factor 1-a 99.7 1.8E-15 3.8E-20 124.5 14.0 151 11-165 5-203 (447)
254 KOG1191 Mitochondrial GTPase [ 99.7 6.8E-16 1.5E-20 123.6 11.0 168 10-178 265-453 (531)
255 COG0481 LepA Membrane GTPase L 99.7 3.6E-15 7.8E-20 119.0 14.5 160 9-175 5-186 (603)
256 COG3596 Predicted GTPase [Gene 99.7 9.9E-16 2.2E-20 114.8 10.6 164 10-177 36-224 (296)
257 PTZ00327 eukaryotic translatio 99.6 4E-15 8.6E-20 122.3 13.8 162 10-174 31-232 (460)
258 PRK09866 hypothetical protein; 99.6 3E-14 6.6E-19 118.7 17.5 108 63-172 231-350 (741)
259 PRK09602 translation-associate 99.6 2.4E-14 5.1E-19 115.9 15.6 83 14-96 2-113 (396)
260 PRK12739 elongation factor G; 99.6 2.6E-14 5.6E-19 123.9 16.7 118 9-132 4-139 (691)
261 TIGR00484 EF-G translation elo 99.6 2.8E-14 6.2E-19 123.7 16.6 119 8-132 5-141 (689)
262 PF09439 SRPRB: Signal recogni 99.6 3E-15 6.5E-20 107.7 8.4 116 13-132 3-126 (181)
263 KOG3905 Dynein light intermedi 99.6 9E-14 1.9E-18 106.4 14.6 188 7-197 46-313 (473)
264 TIGR00503 prfC peptide chain r 99.6 4.8E-14 1E-18 118.1 14.4 119 10-132 8-146 (527)
265 KOG1145 Mitochondrial translat 99.6 2.7E-13 5.8E-18 110.1 16.4 153 12-174 152-315 (683)
266 PRK00007 elongation factor G; 99.6 1.2E-13 2.6E-18 119.8 15.1 118 9-132 6-141 (693)
267 KOG0077 Vesicle coat complex C 99.6 3.8E-14 8.2E-19 98.1 9.5 153 13-172 20-190 (193)
268 KOG1490 GTP-binding protein CR 99.5 7.3E-14 1.6E-18 112.3 11.4 171 11-185 166-351 (620)
269 COG5256 TEF1 Translation elong 99.5 1.6E-13 3.4E-18 108.4 13.0 154 11-165 5-201 (428)
270 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.5E-13 5.4E-18 105.2 13.5 125 11-137 36-172 (313)
271 PF04548 AIG1: AIG1 family; I 99.5 2E-13 4.3E-18 102.2 12.1 160 14-177 1-188 (212)
272 cd01853 Toc34_like Toc34-like 99.5 3.2E-13 7E-18 103.0 13.4 122 9-133 27-164 (249)
273 PRK12740 elongation factor G; 99.5 6E-13 1.3E-17 115.5 16.6 107 19-131 1-125 (668)
274 PTZ00258 GTP-binding protein; 99.5 4.9E-13 1.1E-17 107.3 14.6 87 10-96 18-126 (390)
275 PF05783 DLIC: Dynein light in 99.5 4.6E-13 9.9E-18 110.0 14.4 184 9-195 21-285 (472)
276 COG4917 EutP Ethanolamine util 99.5 1.5E-13 3.2E-18 90.8 9.0 136 15-172 3-143 (148)
277 TIGR00490 aEF-2 translation el 99.5 1.1E-13 2.5E-18 120.3 10.8 118 10-131 16-151 (720)
278 COG2895 CysN GTPases - Sulfate 99.5 5.5E-13 1.2E-17 103.1 12.9 151 10-164 3-192 (431)
279 KOG0090 Signal recognition par 99.5 1.3E-12 2.9E-17 94.3 13.4 114 13-131 38-158 (238)
280 PRK13768 GTPase; Provisional 99.5 1.2E-12 2.5E-17 100.5 12.0 109 63-174 98-246 (253)
281 PRK07560 elongation factor EF- 99.4 4.1E-12 8.8E-17 111.0 15.0 118 10-131 17-152 (731)
282 TIGR00101 ureG urease accessor 99.4 6.1E-12 1.3E-16 93.1 13.8 102 62-174 92-195 (199)
283 PRK09601 GTP-binding protein Y 99.4 8.1E-12 1.7E-16 99.3 15.2 83 14-96 3-107 (364)
284 PF00350 Dynamin_N: Dynamin fa 99.4 2.1E-12 4.5E-17 93.3 10.6 63 63-128 102-168 (168)
285 PLN00116 translation elongatio 99.4 1.9E-12 4E-17 114.4 11.7 119 9-131 15-163 (843)
286 COG5257 GCD11 Translation init 99.4 1.6E-12 3.5E-17 99.5 9.4 168 11-188 8-211 (415)
287 PRK14845 translation initiatio 99.4 3.3E-11 7.1E-16 107.1 18.9 155 10-175 462-673 (1049)
288 PF03029 ATP_bind_1: Conserved 99.4 9.2E-13 2E-17 99.9 7.1 112 63-174 92-236 (238)
289 PTZ00416 elongation factor 2; 99.4 3.4E-12 7.3E-17 112.6 11.7 118 10-131 16-157 (836)
290 KOG1707 Predicted Ras related/ 99.4 1.4E-11 3E-16 101.0 14.1 161 9-175 421-583 (625)
291 TIGR02836 spore_IV_A stage IV 99.4 2E-11 4.4E-16 97.3 14.2 145 10-159 14-219 (492)
292 cd00066 G-alpha G protein alph 99.4 3.4E-11 7.3E-16 95.4 15.5 118 61-178 160-314 (317)
293 KOG1532 GTPase XAB1, interacts 99.4 2E-12 4.3E-17 97.0 7.8 171 9-181 15-270 (366)
294 cd01882 BMS1 Bms1. Bms1 is an 99.4 3E-11 6.6E-16 91.2 14.4 140 10-161 36-182 (225)
295 TIGR00157 ribosome small subun 99.4 2.9E-12 6.3E-17 97.8 8.9 95 73-171 24-119 (245)
296 COG1217 TypA Predicted membran 99.4 1.7E-11 3.6E-16 98.2 13.2 160 12-175 4-195 (603)
297 TIGR00073 hypB hydrogenase acc 99.4 4.7E-12 1E-16 94.5 9.7 151 9-173 18-205 (207)
298 PF05049 IIGP: Interferon-indu 99.4 7.1E-12 1.5E-16 99.7 11.1 163 12-181 34-224 (376)
299 cd01900 YchF YchF subfamily. 99.4 1.5E-11 3.2E-16 94.8 11.8 81 16-96 1-103 (274)
300 smart00010 small_GTPase Small 99.4 1.8E-11 4E-16 83.6 11.0 114 14-164 1-115 (124)
301 KOG1486 GTP-binding protein DR 99.3 5.5E-11 1.2E-15 88.3 13.8 155 12-175 61-288 (364)
302 PRK09435 membrane ATPase/prote 99.3 1.9E-11 4.2E-16 96.5 12.1 103 62-175 149-260 (332)
303 PF00735 Septin: Septin; Inte 99.3 5.2E-11 1.1E-15 92.4 14.3 141 12-157 3-183 (281)
304 KOG0458 Elongation factor 1 al 99.3 3.3E-11 7.2E-16 98.8 13.7 155 10-165 174-372 (603)
305 KOG0461 Selenocysteine-specifi 99.3 1.2E-10 2.7E-15 90.1 15.9 166 11-181 5-195 (522)
306 KOG1144 Translation initiation 99.3 1.7E-11 3.7E-16 102.8 10.9 166 12-181 474-693 (1064)
307 smart00053 DYNc Dynamin, GTPas 99.3 4.8E-11 1E-15 90.2 12.3 119 11-132 24-206 (240)
308 smart00275 G_alpha G protein a 99.3 1.7E-10 3.7E-15 92.1 15.8 117 62-178 184-337 (342)
309 TIGR00993 3a0901s04IAP86 chlor 99.3 1.3E-10 2.9E-15 97.6 15.5 123 8-132 113-250 (763)
310 KOG0410 Predicted GTP binding 99.3 8.8E-12 1.9E-16 95.6 7.0 161 9-181 174-347 (410)
311 TIGR00750 lao LAO/AO transport 99.3 6.9E-11 1.5E-15 93.0 11.4 104 61-175 126-238 (300)
312 COG0012 Predicted GTPase, prob 99.3 3.1E-10 6.7E-15 89.3 14.3 85 13-97 2-109 (372)
313 KOG3886 GTP-binding protein [S 99.2 5.6E-11 1.2E-15 87.1 8.5 147 13-160 4-164 (295)
314 COG0378 HypB Ni2+-binding GTPa 99.2 1.4E-10 3.1E-15 83.2 10.4 53 122-174 146-200 (202)
315 COG3276 SelB Selenocysteine-sp 99.2 1.8E-10 3.9E-15 92.0 11.2 155 15-175 2-162 (447)
316 COG0480 FusA Translation elong 99.2 3.8E-10 8.3E-15 96.9 13.6 118 10-132 7-142 (697)
317 COG5019 CDC3 Septin family pro 99.2 1E-09 2.2E-14 86.0 13.4 117 11-132 21-176 (373)
318 KOG1547 Septin CDC10 and relat 99.1 5.5E-10 1.2E-14 82.5 10.1 154 11-169 44-237 (336)
319 KOG0082 G-protein alpha subuni 99.1 3.4E-09 7.3E-14 83.6 15.0 129 50-180 185-349 (354)
320 PF03308 ArgK: ArgK protein; 99.1 1.2E-10 2.5E-15 87.6 6.4 154 12-179 28-234 (266)
321 KOG1954 Endocytosis/signaling 99.1 6.7E-10 1.5E-14 86.8 10.5 124 6-132 51-225 (532)
322 COG1703 ArgK Putative periplas 99.1 1.9E-09 4.1E-14 82.3 11.8 158 11-180 49-259 (323)
323 KOG2655 Septin family protein 99.1 5E-09 1.1E-13 82.6 13.4 145 11-160 19-202 (366)
324 COG0050 TufB GTPases - transla 99.1 6.5E-09 1.4E-13 79.1 12.9 173 9-185 8-207 (394)
325 PRK10463 hydrogenase nickel in 99.0 3.1E-10 6.7E-15 87.6 5.7 54 119-172 231-286 (290)
326 KOG0468 U5 snRNP-specific prot 99.0 2.6E-09 5.6E-14 89.2 11.1 117 10-130 125-261 (971)
327 KOG0705 GTPase-activating prot 99.0 2.3E-09 4.9E-14 87.6 9.2 165 10-181 27-195 (749)
328 COG4108 PrfC Peptide chain rel 99.0 6.5E-09 1.4E-13 83.1 11.1 132 13-150 12-163 (528)
329 KOG1487 GTP-binding protein DR 99.0 1.7E-09 3.7E-14 80.8 7.4 153 13-175 59-281 (358)
330 cd01855 YqeH YqeH. YqeH is an 98.9 8.2E-09 1.8E-13 76.0 9.7 93 75-174 24-124 (190)
331 cd01859 MJ1464 MJ1464. This f 98.9 4.3E-09 9.4E-14 75.0 7.9 95 75-175 2-96 (156)
332 KOG0447 Dynamin-like GTP bindi 98.9 9E-08 2E-12 78.7 16.1 168 9-180 304-545 (980)
333 cd04178 Nucleostemin_like Nucl 98.9 3E-09 6.6E-14 76.8 6.8 57 11-71 115-171 (172)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.5E-09 7.6E-14 74.2 6.3 54 15-72 85-138 (141)
335 cd01858 NGP_1 NGP-1. Autoanti 98.9 6E-09 1.3E-13 74.4 7.0 56 12-71 101-156 (157)
336 PRK12289 GTPase RsgA; Reviewed 98.9 1.1E-08 2.5E-13 81.7 9.0 92 77-173 81-173 (352)
337 KOG3887 Predicted small GTPase 98.9 2.3E-08 5E-13 74.1 9.1 167 13-182 27-209 (347)
338 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.7E-08 3.7E-13 79.0 8.7 88 80-172 73-161 (287)
339 KOG0448 Mitofusin 1 GTPase, in 98.8 1.3E-07 2.9E-12 79.4 13.6 118 12-133 108-276 (749)
340 PF00503 G-alpha: G-protein al 98.8 2.2E-07 4.8E-12 76.0 14.5 112 62-173 236-388 (389)
341 KOG2486 Predicted GTPase [Gene 98.8 2E-08 4.4E-13 75.9 7.3 159 7-172 130-313 (320)
342 KOG1143 Predicted translation 98.8 3.8E-08 8.3E-13 77.4 9.0 156 7-166 161-379 (591)
343 PRK00098 GTPase RsgA; Reviewed 98.8 2.7E-08 5.9E-13 78.3 8.1 86 82-171 77-163 (298)
344 PRK12288 GTPase RsgA; Reviewed 98.8 5.8E-08 1.3E-12 77.7 9.9 87 83-172 118-205 (347)
345 cd01856 YlqF YlqF. Proteins o 98.8 2.9E-08 6.3E-13 71.9 6.9 58 11-72 113-170 (171)
346 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.8E-08 8.2E-13 77.1 7.9 58 11-72 119-176 (287)
347 TIGR03596 GTPase_YlqF ribosome 98.7 3.4E-08 7.3E-13 77.0 7.4 58 11-72 116-173 (276)
348 COG5258 GTPBP1 GTPase [General 98.7 2.5E-07 5.4E-12 73.1 11.9 156 9-168 113-332 (527)
349 TIGR00092 GTP-binding protein 98.7 5.1E-08 1.1E-12 77.9 8.1 83 14-96 3-108 (368)
350 TIGR03597 GTPase_YqeH ribosome 98.7 1E-07 2.2E-12 76.9 9.7 95 72-173 50-151 (360)
351 cd01855 YqeH YqeH. YqeH is an 98.7 3.6E-08 7.9E-13 72.6 6.0 56 13-71 127-189 (190)
352 TIGR03348 VI_IcmF type VI secr 98.7 2.1E-07 4.5E-12 85.5 12.1 113 16-132 114-257 (1169)
353 cd01859 MJ1464 MJ1464. This f 98.7 6.7E-08 1.4E-12 68.9 7.1 56 12-71 100-155 (156)
354 COG5192 BMS1 GTP-binding prote 98.7 3.3E-07 7.1E-12 75.8 11.8 137 10-159 66-210 (1077)
355 KOG1491 Predicted GTP-binding 98.7 5.1E-08 1.1E-12 75.7 6.6 88 10-97 17-126 (391)
356 COG1618 Predicted nucleotide k 98.7 6.3E-06 1.4E-10 57.7 15.7 146 12-174 4-175 (179)
357 KOG0467 Translation elongation 98.7 1.5E-07 3.2E-12 79.9 9.0 119 8-130 4-136 (887)
358 COG1161 Predicted GTPases [Gen 98.7 5.8E-08 1.2E-12 77.1 6.3 57 12-72 131-187 (322)
359 KOG0466 Translation initiation 98.6 2.3E-08 4.9E-13 76.6 3.1 160 10-175 35-241 (466)
360 PF03193 DUF258: Protein of un 98.6 6.4E-08 1.4E-12 68.5 4.6 59 14-75 36-100 (161)
361 cd01849 YlqF_related_GTPase Yl 98.6 1.4E-07 3.1E-12 67.1 6.5 56 11-71 98-154 (155)
362 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.6E-07 5.7E-12 65.9 7.7 91 82-175 5-95 (157)
363 cd01849 YlqF_related_GTPase Yl 98.5 8.2E-07 1.8E-11 63.2 8.5 86 87-176 1-86 (155)
364 cd01856 YlqF YlqF. Proteins o 98.5 6.8E-07 1.5E-11 64.7 8.0 99 69-175 2-101 (171)
365 KOG1424 Predicted GTP-binding 98.5 2.2E-07 4.7E-12 75.8 5.6 56 13-72 314-369 (562)
366 KOG0460 Mitochondrial translat 98.5 1.2E-06 2.5E-11 68.4 9.2 174 10-186 51-252 (449)
367 cd01851 GBP Guanylate-binding 98.5 4.4E-06 9.6E-11 63.1 12.3 86 11-97 5-103 (224)
368 KOG0099 G protein subunit Galp 98.5 2.5E-06 5.4E-11 64.3 10.5 116 62-177 202-371 (379)
369 KOG0464 Elongation factor G [T 98.5 1.4E-07 3.1E-12 75.2 3.6 119 10-132 34-168 (753)
370 PRK10416 signal recognition pa 98.5 2.9E-06 6.4E-11 67.2 11.1 144 12-167 113-302 (318)
371 PRK12288 GTPase RsgA; Reviewed 98.4 4.9E-07 1.1E-11 72.4 6.3 58 16-76 208-271 (347)
372 KOG3859 Septins (P-loop GTPase 98.4 1.9E-06 4.2E-11 65.4 8.7 116 11-131 40-189 (406)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.1E-06 2.3E-11 61.6 6.8 77 80-162 6-84 (141)
374 TIGR03596 GTPase_YlqF ribosome 98.4 2.5E-06 5.5E-11 66.5 9.5 102 69-178 4-106 (276)
375 PF09547 Spore_IV_A: Stage IV 98.4 2.1E-05 4.5E-10 63.5 14.6 144 11-159 15-219 (492)
376 cd03112 CobW_like The function 98.4 2.8E-06 6.2E-11 60.6 8.5 63 62-130 87-158 (158)
377 KOG0463 GTP-binding protein GP 98.4 4.1E-06 8.9E-11 66.3 9.8 154 7-165 127-348 (641)
378 PRK14974 cell division protein 98.4 5.8E-06 1.3E-10 65.9 10.7 95 62-169 223-324 (336)
379 PRK12289 GTPase RsgA; Reviewed 98.4 7.3E-07 1.6E-11 71.5 5.7 55 16-73 175-235 (352)
380 TIGR03597 GTPase_YqeH ribosome 98.4 9.7E-07 2.1E-11 71.3 6.4 57 14-73 155-215 (360)
381 PRK13796 GTPase YqeH; Provisio 98.4 7.6E-07 1.7E-11 72.0 5.6 56 14-72 161-220 (365)
382 COG1162 Predicted GTPases [Gen 98.3 7.9E-07 1.7E-11 68.8 5.2 58 15-75 166-229 (301)
383 TIGR00157 ribosome small subun 98.3 1E-06 2.2E-11 67.4 5.8 57 14-74 121-183 (245)
384 PRK13796 GTPase YqeH; Provisio 98.3 6.9E-06 1.5E-10 66.5 10.3 94 73-173 57-157 (365)
385 TIGR00064 ftsY signal recognit 98.3 1E-05 2.2E-10 62.8 10.8 95 61-167 154-260 (272)
386 COG3523 IcmF Type VI protein s 98.3 4.6E-06 1E-10 75.4 9.9 156 17-177 129-316 (1188)
387 PRK01889 GTPase RsgA; Reviewed 98.3 4E-06 8.6E-11 67.7 8.4 83 83-171 110-193 (356)
388 TIGR01425 SRP54_euk signal rec 98.3 7.2E-06 1.6E-10 67.1 9.8 114 13-132 100-253 (429)
389 PRK09563 rbgA GTPase YlqF; Rev 98.3 6.4E-06 1.4E-10 64.6 8.8 101 69-177 7-108 (287)
390 KOG2484 GTPase [General functi 98.3 1.2E-06 2.6E-11 69.6 4.4 66 2-71 241-306 (435)
391 PRK14722 flhF flagellar biosyn 98.2 2.5E-05 5.5E-10 63.0 11.7 142 13-158 137-317 (374)
392 PRK13695 putative NTPase; Prov 98.2 6.8E-05 1.5E-09 54.4 12.4 78 81-174 92-172 (174)
393 PF00448 SRP54: SRP54-type pro 98.2 3.7E-05 8E-10 56.8 10.9 133 14-157 2-175 (196)
394 KOG0465 Mitochondrial elongati 98.2 4.7E-06 1E-10 69.5 6.1 116 11-132 37-170 (721)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.1 4.6E-06 1E-10 65.4 5.7 59 14-75 162-226 (287)
396 PRK12727 flagellar biosynthesi 98.1 7.7E-05 1.7E-09 62.5 12.5 136 13-159 350-521 (559)
397 cd03115 SRP The signal recogni 98.1 6.4E-05 1.4E-09 54.4 10.7 82 62-153 83-170 (173)
398 PRK00098 GTPase RsgA; Reviewed 98.1 6.8E-06 1.5E-10 64.8 5.9 57 14-73 165-227 (298)
399 COG3640 CooC CO dehydrogenase 98.1 1.9E-05 4E-10 58.8 7.7 63 63-130 135-197 (255)
400 KOG0085 G protein subunit Galp 98.1 1.4E-05 2.9E-10 59.4 6.8 119 60-178 197-352 (359)
401 PRK11889 flhF flagellar biosyn 98.1 0.00012 2.5E-09 59.3 12.2 135 13-157 241-412 (436)
402 COG1419 FlhF Flagellar GTP-bin 98.1 9.1E-05 2E-09 59.7 11.6 156 13-178 203-397 (407)
403 PF03266 NTPase_1: NTPase; In 98.0 2.9E-05 6.2E-10 55.9 7.8 134 15-162 1-162 (168)
404 COG0523 Putative GTPases (G3E 98.0 0.00011 2.4E-09 58.3 11.6 89 62-158 85-185 (323)
405 PRK14721 flhF flagellar biosyn 98.0 0.00016 3.5E-09 59.3 12.7 136 13-159 191-363 (420)
406 cd03114 ArgK-like The function 98.0 4.4E-05 9.6E-10 53.8 8.2 58 61-129 91-148 (148)
407 PF02492 cobW: CobW/HypB/UreG, 97.9 6E-06 1.3E-10 60.2 2.0 80 62-148 85-170 (178)
408 PRK00771 signal recognition pa 97.9 0.00019 4.1E-09 59.4 10.9 136 11-156 93-266 (437)
409 KOG1534 Putative transcription 97.9 3.2E-05 6.9E-10 56.6 5.6 24 13-36 3-26 (273)
410 COG1162 Predicted GTPases [Gen 97.9 0.00012 2.7E-09 56.8 9.2 89 80-171 74-163 (301)
411 cd02038 FleN-like FleN is a me 97.9 8E-05 1.7E-09 51.9 7.4 107 17-131 4-110 (139)
412 PRK05703 flhF flagellar biosyn 97.9 0.00037 8.1E-09 57.6 12.1 88 62-159 300-394 (424)
413 PRK06995 flhF flagellar biosyn 97.9 0.00088 1.9E-08 56.0 14.2 136 14-159 257-428 (484)
414 PRK12726 flagellar biosynthesi 97.9 0.00046 1E-08 55.7 12.1 138 12-159 205-379 (407)
415 cd02042 ParA ParA and ParB of 97.8 0.00018 3.9E-09 47.3 8.2 82 16-109 2-84 (104)
416 PRK11537 putative GTP-binding 97.8 0.0003 6.5E-09 55.9 10.6 95 62-167 91-196 (318)
417 KOG2485 Conserved ATP/GTP bind 97.8 3.5E-05 7.6E-10 59.6 4.9 60 11-71 141-205 (335)
418 PRK10867 signal recognition pa 97.8 0.00077 1.7E-08 55.7 12.7 86 62-157 184-275 (433)
419 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00015 3.1E-09 41.7 5.7 45 84-129 12-58 (58)
420 TIGR00959 ffh signal recogniti 97.8 0.0006 1.3E-08 56.3 11.7 86 62-157 183-274 (428)
421 PRK12724 flagellar biosynthesi 97.7 0.00044 9.5E-09 56.6 10.5 136 14-159 224-396 (432)
422 PRK14723 flhF flagellar biosyn 97.7 0.001 2.2E-08 58.4 13.1 136 14-158 186-359 (767)
423 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00044 9.6E-09 44.4 8.5 70 16-99 2-72 (99)
424 KOG0469 Elongation factor 2 [T 97.7 0.00019 4.1E-09 59.1 7.8 133 11-147 17-180 (842)
425 KOG0780 Signal recognition par 97.7 0.00021 4.6E-09 57.0 7.5 93 14-106 102-234 (483)
426 KOG4273 Uncharacterized conser 97.7 0.00038 8.2E-09 52.5 8.4 116 13-131 4-122 (418)
427 PRK12723 flagellar biosynthesi 97.7 0.0013 2.8E-08 53.6 12.2 135 13-157 174-347 (388)
428 KOG2423 Nucleolar GTPase [Gene 97.6 2E-05 4.3E-10 62.8 1.3 83 10-99 304-388 (572)
429 cd03111 CpaE_like This protein 97.6 0.00037 8E-09 46.2 7.1 100 19-127 6-106 (106)
430 PRK06731 flhF flagellar biosyn 97.6 0.0018 4E-08 50.2 11.7 134 14-157 76-246 (270)
431 cd00009 AAA The AAA+ (ATPases 97.6 0.00082 1.8E-08 46.5 9.0 26 13-38 19-44 (151)
432 TIGR02475 CobW cobalamin biosy 97.5 0.00096 2.1E-08 53.6 9.8 21 16-36 7-27 (341)
433 PF13207 AAA_17: AAA domain; P 97.5 8.8E-05 1.9E-09 50.2 3.2 22 15-36 1-22 (121)
434 COG0563 Adk Adenylate kinase a 97.5 9.8E-05 2.1E-09 53.6 3.1 23 14-36 1-23 (178)
435 PRK07261 topology modulation p 97.5 0.0001 2.2E-09 53.3 3.1 23 14-36 1-23 (171)
436 PRK08118 topology modulation p 97.5 0.00011 2.3E-09 53.0 3.2 24 14-37 2-25 (167)
437 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0034 7.3E-08 45.6 10.7 88 14-112 26-118 (177)
438 PRK14738 gmk guanylate kinase; 97.4 0.00028 6E-09 52.6 5.1 31 7-37 7-37 (206)
439 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00087 1.9E-08 46.1 7.0 24 14-37 23-46 (133)
440 COG1121 ZnuC ABC-type Mn/Zn tr 97.4 0.0005 1.1E-08 52.4 6.3 23 15-37 32-54 (254)
441 KOG0459 Polypeptide release fa 97.4 0.00029 6.3E-09 56.5 5.2 158 10-168 76-279 (501)
442 cd02036 MinD Bacterial cell di 97.4 0.0044 9.6E-08 44.8 11.2 84 63-153 64-147 (179)
443 PF11111 CENP-M: Centromere pr 97.4 0.012 2.6E-07 42.1 12.8 143 9-175 11-153 (176)
444 PF05621 TniB: Bacterial TniB 97.4 0.0016 3.4E-08 50.9 9.0 107 8-128 56-190 (302)
445 PF13671 AAA_33: AAA domain; P 97.4 0.00014 3E-09 50.7 2.9 22 16-37 2-23 (143)
446 COG0541 Ffh Signal recognition 97.4 0.00078 1.7E-08 54.8 7.3 115 10-131 97-252 (451)
447 PF13555 AAA_29: P-loop contai 97.4 0.00022 4.8E-09 42.0 3.0 21 15-35 25-45 (62)
448 cd03110 Fer4_NifH_child This p 97.3 0.0023 5E-08 46.5 9.0 85 60-153 91-175 (179)
449 cd02019 NK Nucleoside/nucleoti 97.3 0.00025 5.4E-09 43.0 3.0 22 16-37 2-23 (69)
450 KOG1533 Predicted GTPase [Gene 97.3 0.00037 8E-09 52.0 4.4 68 63-132 98-177 (290)
451 COG1116 TauB ABC-type nitrate/ 97.3 0.0002 4.4E-09 54.0 3.0 23 16-38 32-54 (248)
452 PF13521 AAA_28: AAA domain; P 97.3 0.00018 3.8E-09 51.6 2.3 22 15-36 1-22 (163)
453 KOG0446 Vacuolar sorting prote 97.3 0.0002 4.4E-09 62.0 2.9 123 8-132 24-213 (657)
454 cd01131 PilT Pilus retraction 97.2 0.0019 4.2E-08 47.8 7.6 22 16-37 4-25 (198)
455 PF00005 ABC_tran: ABC transpo 97.2 0.0003 6.5E-09 48.7 3.1 24 15-38 13-36 (137)
456 PRK10646 ADP-binding protein; 97.2 0.0035 7.6E-08 44.2 8.2 23 15-37 30-52 (153)
457 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0051 1.1E-07 51.6 10.2 22 16-37 113-134 (634)
458 PRK06217 hypothetical protein; 97.2 0.00039 8.5E-09 50.8 3.4 24 14-37 2-25 (183)
459 KOG0066 eIF2-interacting prote 97.2 0.0042 9.1E-08 50.9 9.3 28 11-38 611-638 (807)
460 PRK01889 GTPase RsgA; Reviewed 97.2 0.00048 1E-08 55.7 4.0 25 14-38 196-220 (356)
461 PRK04195 replication factor C 97.2 0.012 2.6E-07 49.8 12.5 25 13-37 39-63 (482)
462 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0094 2E-07 41.7 10.1 66 15-91 28-94 (144)
463 COG0194 Gmk Guanylate kinase [ 97.1 0.00026 5.7E-09 51.0 2.1 25 13-37 4-28 (191)
464 COG1136 SalX ABC-type antimicr 97.1 0.00037 8E-09 52.3 3.0 24 15-38 33-56 (226)
465 COG0802 Predicted ATPase or ki 97.1 0.0027 5.9E-08 44.3 7.0 25 14-38 26-50 (149)
466 PF13238 AAA_18: AAA domain; P 97.1 0.00041 8.8E-09 47.3 2.9 22 16-37 1-22 (129)
467 PRK14737 gmk guanylate kinase; 97.1 0.0004 8.6E-09 50.9 3.0 24 14-37 5-28 (186)
468 PRK03839 putative kinase; Prov 97.1 0.00043 9.3E-09 50.4 3.1 22 15-36 2-23 (180)
469 PF02367 UPF0079: Uncharacteri 97.1 0.0013 2.9E-08 44.6 5.2 77 14-92 16-94 (123)
470 PF03205 MobB: Molybdopterin g 97.1 0.00048 1E-08 48.1 3.2 24 15-38 2-25 (140)
471 cd00071 GMPK Guanosine monopho 97.1 0.00046 9.9E-09 48.0 3.0 21 16-36 2-22 (137)
472 COG1126 GlnQ ABC-type polar am 97.1 0.00061 1.3E-08 50.4 3.7 24 15-38 30-53 (240)
473 PF00004 AAA: ATPase family as 97.1 0.0005 1.1E-08 47.0 3.1 22 16-37 1-22 (132)
474 smart00382 AAA ATPases associa 97.1 0.00055 1.2E-08 47.0 3.3 28 14-41 3-30 (148)
475 PF03215 Rad17: Rad17 cell cyc 97.1 0.0049 1.1E-07 52.3 9.4 23 15-37 47-69 (519)
476 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0038 8.3E-08 44.3 7.6 24 14-37 26-49 (157)
477 PF04665 Pox_A32: Poxvirus A32 97.1 0.00056 1.2E-08 51.9 3.3 27 10-36 10-36 (241)
478 PRK14530 adenylate kinase; Pro 97.0 0.00057 1.2E-08 51.3 3.2 23 14-36 4-26 (215)
479 COG3845 ABC-type uncharacteriz 97.0 0.0081 1.8E-07 49.7 9.9 52 77-129 150-201 (501)
480 PRK10078 ribose 1,5-bisphospho 97.0 0.0006 1.3E-08 50.0 3.2 23 15-37 4-26 (186)
481 TIGR02322 phosphon_PhnN phosph 97.0 0.00057 1.2E-08 49.7 3.0 23 15-37 3-25 (179)
482 TIGR00235 udk uridine kinase. 97.0 0.00081 1.7E-08 50.2 3.9 26 11-36 4-29 (207)
483 COG0552 FtsY Signal recognitio 97.0 0.016 3.4E-07 45.8 11.0 141 12-166 138-326 (340)
484 cd02023 UMPK Uridine monophosp 97.0 0.00059 1.3E-08 50.5 3.0 22 16-37 2-23 (198)
485 PRK05480 uridine/cytidine kina 97.0 0.00079 1.7E-08 50.3 3.7 26 12-37 5-30 (209)
486 PRK05416 glmZ(sRNA)-inactivati 97.0 0.013 2.8E-07 46.0 10.4 21 14-34 7-27 (288)
487 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00071 1.5E-08 44.7 2.8 21 14-34 16-36 (107)
488 KOG3347 Predicted nucleotide k 97.0 0.00058 1.3E-08 47.4 2.4 25 11-35 5-29 (176)
489 cd03216 ABC_Carb_Monos_I This 97.0 0.0053 1.1E-07 44.0 7.6 24 15-38 28-51 (163)
490 PF07728 AAA_5: AAA domain (dy 97.0 0.00077 1.7E-08 46.8 3.1 23 15-37 1-23 (139)
491 TIGR03263 guanyl_kin guanylate 97.0 0.00069 1.5E-08 49.2 3.0 23 15-37 3-25 (180)
492 cd01130 VirB11-like_ATPase Typ 97.0 0.00077 1.7E-08 49.4 3.2 25 13-37 25-49 (186)
493 PF07015 VirC1: VirC1 protein; 97.0 0.0092 2E-07 44.9 8.9 102 62-168 84-187 (231)
494 PRK13949 shikimate kinase; Pro 96.9 0.00083 1.8E-08 48.5 3.2 22 15-36 3-24 (169)
495 PRK14532 adenylate kinase; Pro 96.9 0.00077 1.7E-08 49.4 3.1 23 14-36 1-23 (188)
496 COG1936 Predicted nucleotide k 96.9 0.00072 1.6E-08 48.2 2.8 21 14-34 1-21 (180)
497 COG3840 ThiQ ABC-type thiamine 96.9 0.00084 1.8E-08 48.4 3.0 25 14-38 26-50 (231)
498 PRK08233 hypothetical protein; 96.9 0.00079 1.7E-08 48.9 3.0 24 14-37 4-27 (182)
499 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00076 1.7E-08 49.3 3.0 22 14-35 4-25 (188)
500 COG3638 ABC-type phosphate/pho 96.9 0.00078 1.7E-08 50.5 2.9 21 15-35 32-52 (258)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-42 Score=241.45 Aligned_cols=202 Identities=45% Similarity=0.745 Sum_probs=179.1
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
....++.+||+|+|++|+|||+|+.||....+...+..|+|.++...++.++++.+++++|||+|+++|+.+..++|+++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVEN 165 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 165 (217)
|++|+|||+++.+||+.+..|+.++..+...+.|.++|+||+|+.+.+.++.++++.++..++.+ ++++||+++.|+++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCcC
Q 027856 166 AFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216 (217)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (217)
.|..|...+.+........-. .....+.+.. .+..+..++||.
T Consensus 163 ~F~~la~~lk~~~~~~~~~~~------~~~~~~ql~~--~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHVKWST------ASLESVQLKG--TPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHHHHHhcccCCCCCc------CCCCceeeCC--CCcccccCCCCC
Confidence 999999888877654322211 1122333333 345555677984
No 2
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-40 Score=234.73 Aligned_cols=210 Identities=74% Similarity=1.127 Sum_probs=191.1
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+.+.+..+||+++|++++|||-|+.||..+.|.....+|+|.++....+.++++.++.+||||+|+++|+....++|+.+
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
.++++|||++...+|+.+..|+.+|+.+.+.++++++|+||+||...+.+..++++.++...+..++++||.++.|++..
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCC---CCCCceeeecccCc--cccccccCCcC
Q 027856 167 FTEVLTQIYRVVSRKALEIGDDPAA---LPKGQTINVGTKDD--VSAVKKVGCCS 216 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~ 216 (217)
|..++..++...+++......++.. ..++..+.+...-+ ....++..||+
T Consensus 168 F~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~ 222 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS 222 (222)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence 9999999999999998887766422 23555665543332 35566778886
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-40 Score=234.05 Aligned_cols=198 Identities=41% Similarity=0.723 Sum_probs=175.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|..++|||||+-||..+.|.....+|+|..+...++.+++..+++.||||+|+++|.++...||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35789999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|||+++.+||..++.|+.+|.....+++-+.+|+||+|+.+.+++..+++..+++..++.|+++||++|.|+.++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999888788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCcC
Q 027856 171 LTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (217)
.+.+.....+..... +--+ ...++.+.+ ..+..++||+
T Consensus 163 a~~lp~~~~~~~~~~----~~~~--~g~~l~~~~--~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGL----PNRR--QGVDLNSNQ--EPARPSGCCA 200 (200)
T ss_pred HHhccCccccccccc----cccc--cceecccCC--CCcCcCCcCC
Confidence 999987765543211 1111 334444443 4466788985
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=220.53 Aligned_cols=170 Identities=46% Similarity=0.760 Sum_probs=160.4
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
......+||+++|.+|+|||||+.+|..+.|....+.|+|.++....+.+++..+++-+|||+|+++|+.+...||+++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 34567899999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++|+|||++.+++|..+..|+.++.-+.. +++..++|+||+|...++.++.+|...+++++++.|+++||++.+|+...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999988775 56777899999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 167 FTEVLTQIYRV 177 (217)
Q Consensus 167 ~~~i~~~~~~~ 177 (217)
|+.++.++.+.
T Consensus 166 FeelveKIi~t 176 (209)
T KOG0080|consen 166 FEELVEKIIET 176 (209)
T ss_pred HHHHHHHHhcC
Confidence 99999998854
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-39 Score=224.54 Aligned_cols=172 Identities=52% Similarity=0.876 Sum_probs=166.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
..+.+|++++|+.|+|||+|+.+|+...|.+.+..|.|.++-...++++++.+++++|||+|++.+++....||+.+-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
|+|||+++++||..+..|+..++++..++..+++++||+|+...++++.+|.++|++++++.++++||++++|++++|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027856 170 VLTQIYRVVSRK 181 (217)
Q Consensus 170 i~~~~~~~~~~~ 181 (217)
+...+++.....
T Consensus 163 ta~~Iy~~~q~g 174 (216)
T KOG0098|consen 163 TAKEIYRKIQDG 174 (216)
T ss_pred HHHHHHHHHHhc
Confidence 999999886654
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-39 Score=225.58 Aligned_cols=170 Identities=36% Similarity=0.662 Sum_probs=160.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.-..+|++++|+.++||||||.||..+.|...|.+|+|+++...++.+.+..+.+++|||+|+++|+++...|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
|+|||+++..||+....|++.+....+.+ ..+++|+||.||.+.++++.+|.+..++++++.|+++||+.|.|+.++|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 99999999999999999999999888764 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027856 169 EVLTQIYRVVS 179 (217)
Q Consensus 169 ~i~~~~~~~~~ 179 (217)
.|...+.+...
T Consensus 179 rIaa~l~~~~~ 189 (221)
T KOG0094|consen 179 RIAAALPGMEV 189 (221)
T ss_pred HHHHhccCccc
Confidence 98877776654
No 7
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.2e-38 Score=235.41 Aligned_cols=209 Identities=68% Similarity=1.075 Sum_probs=176.3
Q ss_pred CCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856 5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 5 ~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
+...+.+..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||+|++++..++..+++
T Consensus 4 ~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 83 (216)
T PLN03110 4 RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR 83 (216)
T ss_pred CcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhC
Confidence 33445667899999999999999999999999988888899999988888889998999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
.++++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 84 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~ 163 (216)
T PLN03110 84 GAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVE 163 (216)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999999988766689999999999998777788888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCC-C--CCCCCCceeeecccCccccccccCCcC
Q 027856 165 NAFTEVLTQIYRVVSRKALEIGDD-P--AALPKGQTINVGTKDDVSAVKKVGCCS 216 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (217)
++|+++++.+.+........-... . ...++++++++ .+. ...|+++|||
T Consensus 164 ~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~c~ 215 (216)
T PLN03110 164 KAFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINV--ADT-SGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHHHHHHhhccccccccCcccccCcCcCCcccc--cCc-cCCCCCCCcC
Confidence 999999999988765544333221 1 22245555555 222 3456678997
No 8
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-38 Score=225.58 Aligned_cols=176 Identities=49% Similarity=0.841 Sum_probs=168.7
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC
Q 027856 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
...+.+..++|+++|++|||||+|+.+|..+.|...+..|.|+++...++..++..+.+++|||+|+++++.+...|++.
T Consensus 5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg 84 (207)
T KOG0078|consen 5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG 84 (207)
T ss_pred ccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 027856 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 165 (217)
++++++|||+++..||+++..|+..+.++...++|.++|+||+|+...+.++.+..++++.++|+.++|+||++|.||.+
T Consensus 85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 85 AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 027856 166 AFTEVLTQIYRVVSRK 181 (217)
Q Consensus 166 ~~~~i~~~~~~~~~~~ 181 (217)
.|-.+.+.+.......
T Consensus 165 aF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 165 AFLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHHHhhcchh
Confidence 9999999999755543
No 9
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-37 Score=230.27 Aligned_cols=195 Identities=37% Similarity=0.629 Sum_probs=167.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|++|+|||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888999888877778787 7889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHT----DSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNVENAF 167 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 167 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||.|+.+.+.+..+++.+++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886532 2578999999999998656778889999999988 689999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856 168 TEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC 215 (217)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (217)
+++++.+.+.+.....+..+ .+...+...++++.+|..|||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAETP-------EDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcCC-------CcccccccccceeccccCCCC
Confidence 99999998776554443332 223445555567777777999
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.7e-36 Score=223.42 Aligned_cols=164 Identities=39% Similarity=0.731 Sum_probs=152.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
++|+++|..|||||||+++|..+.|...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899998988888889998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
|++++.|++.+..|+..+......+.|+++|+||+|+.+.+++..+++++++... ++.|+++||++|.|++++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999988776678999999999999877888888899898875 788999999999999999999999
Q ss_pred HHHHH
Q 027856 173 QIYRV 177 (217)
Q Consensus 173 ~~~~~ 177 (217)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88754
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=214.70 Aligned_cols=171 Identities=40% Similarity=0.685 Sum_probs=159.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
-...+||+++|++|+|||||++++....|...+..|+|.++....+.+++..+.+++|||+|+++|.++...+|+++|..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCc--cCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHL--RAVSTEDATAFAEREN-TFFMETSALESMN 162 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 162 (217)
++|||+.++.||+.+..|..++..... ...|+||++||+|+... +.++...++++|...+ ++||++||+.+.|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 999999999999999999999987765 35789999999999763 6788999999999875 8899999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027856 163 VENAFTEVLTQIYRVVSR 180 (217)
Q Consensus 163 i~~~~~~i~~~~~~~~~~ 180 (217)
+.+.|..+.+.+++....
T Consensus 166 V~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 166 VDEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHHhccch
Confidence 999999999999987654
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.6e-36 Score=220.73 Aligned_cols=168 Identities=39% Similarity=0.698 Sum_probs=154.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..+||+++|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999988888878888888888888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
++|||++++.|++.+..|+..+.... ++.|++||+||.|+.+.+.++.++++.+++..++.++++||++|.|++++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997765 58999999999999877788899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027856 170 VLTQIYRVV 178 (217)
Q Consensus 170 i~~~~~~~~ 178 (217)
+++.+....
T Consensus 162 l~~~i~~~~ 170 (189)
T cd04121 162 LARIVLMRH 170 (189)
T ss_pred HHHHHHHhc
Confidence 998887544
No 13
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=210.12 Aligned_cols=213 Identities=32% Similarity=0.571 Sum_probs=180.5
Q ss_pred CCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhh
Q 027856 4 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYY 83 (217)
Q Consensus 4 ~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 83 (217)
...-......+||+++|..-+|||||+-|+..+.|.-....|....+....+.+.+....+.||||+|+++|..+-..||
T Consensus 4 ~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY 83 (218)
T KOG0088|consen 4 ETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY 83 (218)
T ss_pred cccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE
Confidence 33444566789999999999999999999999999988888888888888898999999999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856 84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (217)
+.++++++|||++++.||+.+..|..+++...+..+.++||+||+|+.+++.++.++++++++..|+.|+++||+++.|+
T Consensus 84 RgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 84 RGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGI 163 (218)
T ss_pred eCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCc-cccccccCCcC
Q 027856 164 ENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDD-VSAVKKVGCCS 216 (217)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 216 (217)
.++|..+...+.+..++.+..-...+..-|..++...-...+ +-.+-.++||+
T Consensus 164 ~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~ 217 (218)
T KOG0088|consen 164 SELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCCR 217 (218)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCccC
Confidence 999999999999988766555433332222222222222222 22344556997
No 14
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.5e-37 Score=206.56 Aligned_cols=170 Identities=51% Similarity=0.787 Sum_probs=162.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+.++.++.+|+|++|+|||+|+.+|....|+.+|..|+|.++...++.++|..+++.||||+|++.|+.+...+++..++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
+++|||+++.+||.++..|+++++..++ ..|-++|+||.|..+.+.+..+++..++...++.+|++|++.++|++.+|.
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 9999999999999999999999998875 888999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027856 169 EVLTQIYRVVS 179 (217)
Q Consensus 169 ~i~~~~~~~~~ 179 (217)
-|.+.+.+...
T Consensus 163 cit~qvl~~k~ 173 (198)
T KOG0079|consen 163 CITKQVLQAKL 173 (198)
T ss_pred HHHHHHHHHHH
Confidence 99999888763
No 15
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.8e-35 Score=219.63 Aligned_cols=196 Identities=45% Similarity=0.697 Sum_probs=163.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+..++|+++|++|+|||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999988888889888888888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|||++++.+++.+..|+..+.... ...|+++|+||+|+.....+..+++..++...+..++++||++|.|++++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 9999999999999999999987654 478999999999998766777888888888888999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856 171 LTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC 215 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (217)
.+.+....... .+-..+.+..+....+ ...+|+..||
T Consensus 163 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~ 199 (199)
T cd04110 163 TELVLRAKKDN-------LAKQQQQQQNDVVKLP-KNSKRKKRCC 199 (199)
T ss_pred HHHHHHhhhcc-------CcccccCCccccCccc-hhccccccCC
Confidence 99998664432 1122222233333333 3336677888
No 16
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-35 Score=217.88 Aligned_cols=187 Identities=45% Similarity=0.739 Sum_probs=162.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878888888887788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+........|+++|+||.|+.+...+..+++..++...+++++++||++|.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998767778888888888888999999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCcCC
Q 027856 174 IYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217 (217)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (217)
+.....+.++. ..+..+..+|..||||
T Consensus 161 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 187 (188)
T cd04125 161 IIKRLEEQELS-----------------PKNIKQQFKKKNNCFI 187 (188)
T ss_pred HHHHhhcCcCC-----------------ccccccccccccCccc
Confidence 87654432111 1334445667789986
No 17
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2e-35 Score=218.12 Aligned_cols=190 Identities=42% Similarity=0.667 Sum_probs=159.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|++|||||||+++|..+.+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998754 5667777777777778888889999999999999999899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
+|++++.+++.+..|+..+......+.|+++|+||.|+...+.+..++...++...+.+|+++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876668999999999999776677778888888888999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856 173 QIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC 215 (217)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (217)
.+.+.....+.+-. . .-.....+.+|+.+||
T Consensus 161 ~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQPDEGK-----------F-KISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHhccccCCCCc-----------E-EeccccCcccccCCCC
Confidence 88766432111111 0 1223346667888999
No 18
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.8e-35 Score=221.31 Aligned_cols=187 Identities=35% Similarity=0.567 Sum_probs=153.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+|+|.+|+|||||+++|+.+.+.. +.+|.+.++....+ ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 45676665543332 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------ccCCCHHHHHHHHHHcC-----
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH-------------------LRAVSTEDATAFAEREN----- 149 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 149 (217)
|++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+++..++...+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998888777765556799999999999975 56788999999998876
Q ss_pred ---------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856 150 ---------TFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC 215 (217)
Q Consensus 150 ---------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (217)
+.|+++||++|.|++++|..+++.+++...++..+-++. ...+.+..++ ++|.+||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT------QGTVNLPNPK----RSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh------hccccCCCcc----cCCCCCC
Confidence 679999999999999999999999998877665433221 2234444433 6788999
No 19
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.7e-35 Score=218.39 Aligned_cols=185 Identities=34% Similarity=0.506 Sum_probs=154.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
+|+++|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999998887777776544 3445678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 95 VTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...++..++...++.++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 4789999999999987677888888888888889999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856 172 TQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC 215 (217)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (217)
+.+....... . ++ ..++...+.||++.||
T Consensus 160 ~~l~~~~~~~-----~---------~~-~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGG-----Q---------GP-KGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhccc-----C---------CC-cCCCCCcccccccCce
Confidence 8877555442 1 11 3344445666676776
No 20
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-36 Score=201.82 Aligned_cols=206 Identities=36% Similarity=0.702 Sum_probs=178.1
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+....+||+++|..|+|||.|+++|+.+.|++....|+|.++-..++.+++..+++++|||+|+++++++...+++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
++|+|||++...||+-+..|+.++.++.....--|+|+||+|+.+.++++....++|.+.....|+++||++..|++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999988888889999999999988999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCC---CCCCCCCCceeeecccCccccccccCCcC
Q 027856 168 TEVLTQIYRVVSRKALEIGD---DPAALPKGQTINVGTKDDVSAVKKVGCCS 216 (217)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (217)
..+.-.+......+.....- .+.....|.+|.+.+.- +.+...||.
T Consensus 162 ~~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~a---qt~~~~cc~ 210 (213)
T KOG0095|consen 162 LDLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYA---QTQLLTCCN 210 (213)
T ss_pred HHHHHHHHHHHHhccchhhccccCccccCCCCcccchhHH---HHHHhcccc
Confidence 98887666555444332211 12233566677666652 234457774
No 21
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.5e-35 Score=219.09 Aligned_cols=164 Identities=34% Similarity=0.552 Sum_probs=149.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECC-eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-KIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|.+|+|||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999889999999888888887754 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999987653 35689999999999876778888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027856 170 VLTQIYRV 177 (217)
Q Consensus 170 i~~~~~~~ 177 (217)
+.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988865
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.6e-34 Score=217.37 Aligned_cols=176 Identities=24% Similarity=0.434 Sum_probs=155.4
Q ss_pred CCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh
Q 027856 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
|...+..++....+||+++|++|||||+|+++|..+.|...+.+|.+..+. ..+.+++..+.+.||||+|++.|..++.
T Consensus 1 ~~~~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~ 79 (232)
T cd04174 1 MKERRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRP 79 (232)
T ss_pred CcccccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence 455556666678899999999999999999999999999889899876664 4577889999999999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHH
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAER 147 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~ 147 (217)
.+++++|++++|||++++.|++.+ ..|+..+.... ++.|+++|+||+|+.+ .+.++.+++++++..
T Consensus 80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 999999999999999999999984 78999998765 4789999999999964 256889999999999
Q ss_pred cCC-cEEEEecCCCC-CHHHHHHHHHHHHHHHH
Q 027856 148 ENT-FFMETSALESM-NVENAFTEVLTQIYRVV 178 (217)
Q Consensus 148 ~~~-~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~ 178 (217)
+++ .|+++||++|. |++++|..++..+++..
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence 998 59999999998 89999999999888653
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.2e-34 Score=209.36 Aligned_cols=164 Identities=51% Similarity=0.869 Sum_probs=151.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999999888888888888777788888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+..+++..++...++.++++||++|.|+.++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776678999999999999887778888999999999999999999999999999999998
Q ss_pred HHHH
Q 027856 173 QIYR 176 (217)
Q Consensus 173 ~~~~ 176 (217)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8764
No 24
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-35 Score=198.21 Aligned_cols=174 Identities=41% Similarity=0.756 Sum_probs=164.6
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
++..+...|+.++|+..+|||||+.++++..|.+.+-.|.|+++...++.-..+.+++++|||.|+++|+.+...+++++
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 44567788999999999999999999999999999999999999999887788889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
+++|+|||+.+.+|+..++.|...+..+.-.+.|+|+|+||+|+..++.++.+....+++++|+.||++||+.+.|+.++
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027856 167 FTEVLTQIYRVVSR 180 (217)
Q Consensus 167 ~~~i~~~~~~~~~~ 180 (217)
|+.++..+-+..+.
T Consensus 175 Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 175 FERLVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999988877654
No 25
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=4.5e-34 Score=213.66 Aligned_cols=169 Identities=53% Similarity=0.886 Sum_probs=154.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+..+||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|||++++.+++.+..|+..+........|+++|+||+|+.+.+.++.++.++++..++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988876666689999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 027856 171 LTQIYRVVS 179 (217)
Q Consensus 171 ~~~~~~~~~ 179 (217)
++.+++...
T Consensus 164 ~~~~~~~~~ 172 (210)
T PLN03108 164 AAKIYKKIQ 172 (210)
T ss_pred HHHHHHHhh
Confidence 999987643
No 26
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=213.64 Aligned_cols=166 Identities=35% Similarity=0.542 Sum_probs=146.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..+||+++|.+|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999998877777776555 4566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
|||++++.+++.+..|+..+..... .+.|+++|+||.|+.+.+.+..+++..++...+.+++++||++|.|+.++|.++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999998876543 478999999999997766677778888888888899999999999999999999
Q ss_pred HHHHHHHH
Q 027856 171 LTQIYRVV 178 (217)
Q Consensus 171 ~~~~~~~~ 178 (217)
++.+....
T Consensus 163 ~~~l~~~~ 170 (189)
T PTZ00369 163 VREIRKYL 170 (189)
T ss_pred HHHHHHHh
Confidence 98887543
No 27
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=201.16 Aligned_cols=179 Identities=44% Similarity=0.745 Sum_probs=165.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.+.+++++++|++-+|||+|++.|+.+.+..-..||.|.+++...+.. .|..+++++|||+|+++++++...+++++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 467899999999999999999999999999999999999998887766 6888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCC-cEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTD-SNI-VIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~-p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
+++|||+++++||+.++.|+.+..-... +.+ -+.+|++|+|+...++++.+|++.++..++..|+++|+++|.|+++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999999876665 444 45779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCC
Q 027856 167 FTEVLTQIYRVVSRKALEIGDD 188 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~ 188 (217)
|..+.+.+++...+.+.-+.+.
T Consensus 165 F~mlaqeIf~~i~qGeik~edg 186 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDG 186 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeec
Confidence 9999999999998877777664
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.9e-34 Score=207.67 Aligned_cols=166 Identities=51% Similarity=0.860 Sum_probs=152.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35699999999999999999999999999988899988887778888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766689999999999998766778888888999889999999999999999999999
Q ss_pred HHHHHH
Q 027856 171 LTQIYR 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
++.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 988753
No 29
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-35 Score=197.90 Aligned_cols=184 Identities=46% Similarity=0.758 Sum_probs=172.2
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+...+..+|++++|+.|+|||.|+.+|..+.+......|+|.++....+.+.++.+++++|||+|+++|++..+.||+++
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 44567899999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
-+.++|||++++++|+.+..|+...+....+++.+++++||.|+.+.++++..|+..|++++.+.+.++|+++|+|+++.
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCC
Q 027856 167 FTEVLTQIYRVVSRKALEIGDDPA 190 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~~~ 190 (217)
|-...+.+.......++.-++...
T Consensus 163 Fl~c~~tIl~kIE~GElDPer~gs 186 (214)
T KOG0086|consen 163 FLKCARTILNKIESGELDPERMGS 186 (214)
T ss_pred HHHHHHHHHHHHhhcCCCHHHccc
Confidence 999999999888777665554433
No 30
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3e-34 Score=209.56 Aligned_cols=163 Identities=29% Similarity=0.509 Sum_probs=146.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|++|+|||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999888888887655 356778899999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcCC-cEEEEe
Q 027856 91 LVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.|++.+ ..|+..+.... ++.|+++|+||.|+.+ .+.++.++++++++..++ .|+++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 78999998765 5799999999999864 245889999999999996 899999
Q ss_pred cCCCCC-HHHHHHHHHHHHH
Q 027856 157 ALESMN-VENAFTEVLTQIY 175 (217)
Q Consensus 157 a~~~~~-i~~~~~~i~~~~~ 175 (217)
|++|.| ++++|..+++.++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999998643
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.2e-34 Score=207.62 Aligned_cols=165 Identities=32% Similarity=0.491 Sum_probs=147.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999888878877444 44567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
||++++.|++.+..|+..+.... ..+.|+++|+||+|+.+.+.++.+++..+++..+++|+++||++|.|++++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999988888877643 35799999999999987777888899999998999999999999999999999999
Q ss_pred HHHHHHH
Q 027856 172 TQIYRVV 178 (217)
Q Consensus 172 ~~~~~~~ 178 (217)
+.+.+..
T Consensus 161 ~~~~~~~ 167 (172)
T cd04141 161 REIRRKE 167 (172)
T ss_pred HHHHHhc
Confidence 8887644
No 32
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.1e-33 Score=204.16 Aligned_cols=162 Identities=42% Similarity=0.742 Sum_probs=147.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888888777777777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
|.+++.+++.+..|+..+........|+++|+||+|+.+.+.+..++..+++...+.+++++||++|.|+.++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987765688999999999998767777888888888888999999999999999999999986
Q ss_pred HH
Q 027856 174 IY 175 (217)
Q Consensus 174 ~~ 175 (217)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 33
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4e-34 Score=207.73 Aligned_cols=159 Identities=31% Similarity=0.571 Sum_probs=143.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+.+|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888889887665 445677888999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCcc----------CCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 027856 94 DVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHLR----------AVSTEDATAFAERENT-FFMETSALESM 161 (217)
Q Consensus 94 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (217)
|++++.||+.+ ..|+..+.... .+.|+++|+||+|+.+.+ .+..+++..+++..++ .|+++||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987665 479999999999996532 4788999999999987 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQI 174 (217)
Q Consensus 162 ~i~~~~~~i~~~~ 174 (217)
|++++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999865
No 34
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=9e-34 Score=203.84 Aligned_cols=160 Identities=43% Similarity=0.734 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
++|+++|++|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888899888888788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
|++++.|++.+..|+..+......+.|+++|+||.|+...+.+..+++..+++..+++|+++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887765679999999999998777788889999999899999999999999999999999864
No 35
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.5e-33 Score=209.68 Aligned_cols=170 Identities=45% Similarity=0.743 Sum_probs=152.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
.+||+++|++|+|||||+++|+++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888888888887777776 4667899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
|||++++.+++.+..|+..+..... ...|+++|+||.|+.+.+.+..++...++..+++.++++||++|.|+.++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999876553 357789999999998777788888999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 027856 171 LTQIYRVVSRKA 182 (217)
Q Consensus 171 ~~~~~~~~~~~~ 182 (217)
.+.+++.....+
T Consensus 162 ~~~~~~~~~~~~ 173 (211)
T cd04111 162 TQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHhhcCC
Confidence 999988876654
No 36
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.2e-33 Score=203.25 Aligned_cols=166 Identities=54% Similarity=0.878 Sum_probs=152.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+..+||+++|.+|+|||||++++++..+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45789999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+.....++.|+++|+||.|+.....+..+++..++...++.++++||+++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998766778888888998899999999999999999999999
Q ss_pred HHHHHH
Q 027856 171 LTQIYR 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
.+.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988764
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.4e-33 Score=202.91 Aligned_cols=161 Identities=39% Similarity=0.705 Sum_probs=153.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 95 VTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
++++.|++.+..|+..+......+.|+++|+||.|+.+.+.++.+++++++..++.+|+++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988876799999999999998889999999999999999999999999999999999999987
Q ss_pred H
Q 027856 175 Y 175 (217)
Q Consensus 175 ~ 175 (217)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 38
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.9e-33 Score=203.13 Aligned_cols=163 Identities=51% Similarity=0.809 Sum_probs=149.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999998888888888888878888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
||++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|..|.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998776567999999999999876777888899999999999999999999999999999998
Q ss_pred HHH
Q 027856 173 QIY 175 (217)
Q Consensus 173 ~~~ 175 (217)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 39
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.5e-34 Score=206.52 Aligned_cols=161 Identities=27% Similarity=0.505 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999998888888876653 5677889999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcCC-cEEEEecC
Q 027856 93 YDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAERENT-FFMETSAL 158 (217)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 158 (217)
||++++.|++.+ ..|+..+.... ++.|+++|+||.|+.+ .+.++.+++++++...++ .|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999998765 5799999999999964 235888999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 027856 159 ESMN-VENAFTEVLTQIY 175 (217)
Q Consensus 159 ~~~~-i~~~~~~i~~~~~ 175 (217)
+|++ ++++|..+++.++
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998544
No 40
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.3e-33 Score=205.25 Aligned_cols=167 Identities=41% Similarity=0.721 Sum_probs=149.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC----------CeEEEEEEEeCCChhhhhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD----------DKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+. +..+.+.+|||||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 356999999999999999999999999988888888888776666554 4568999999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
.+++++|++++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987654 34789999999999987777888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~~~~ 177 (217)
|.|++++|+++++.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887653
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.8e-33 Score=203.25 Aligned_cols=162 Identities=33% Similarity=0.641 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899998888888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
|++++.+++.+..|+..+..... ...|+++|+||+|+.+......++...++...+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999987654 4689999999999976566778888888888889999999999999999999
Q ss_pred HHHHHHH
Q 027856 169 EVLTQIY 175 (217)
Q Consensus 169 ~i~~~~~ 175 (217)
+|++.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 42
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.6e-33 Score=202.22 Aligned_cols=163 Identities=81% Similarity=1.200 Sum_probs=149.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999999888888999888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
|+|++++.+++.+..|+..+......+.|+++|+||.|+...+.+..++...++...++.++++||++|.|++++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887666799999999999987777788888888888889999999999999999999998
Q ss_pred HHH
Q 027856 172 TQI 174 (217)
Q Consensus 172 ~~~ 174 (217)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 43
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.7e-33 Score=205.88 Aligned_cols=161 Identities=30% Similarity=0.540 Sum_probs=141.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|..|+|||||+.+|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888887654 34456788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcC-CcEEEEecC
Q 027856 93 YDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAEREN-TFFMETSAL 158 (217)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 158 (217)
||++++.|++.+. .|+..+.... .+.|+++|+||.|+.+.. .+..+++++++...+ ..|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 5888877654 479999999999996532 356778889999888 589999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027856 159 ESMNVENAFTEVLTQIY 175 (217)
Q Consensus 159 ~~~~i~~~~~~i~~~~~ 175 (217)
+|.|++++|+++++.+.
T Consensus 161 ~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 161 NQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998775
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.5e-33 Score=204.29 Aligned_cols=163 Identities=28% Similarity=0.515 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|..|+|||||+++|+.+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899998888888888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-----cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-----RAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
|++++.+++.+..|+..+........| ++|+||+|+... .+...++.+++++..++.++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876555566 688999999521 11224567778888889999999999999999999
Q ss_pred HHHHHHHHH
Q 027856 169 EVLTQIYRV 177 (217)
Q Consensus 169 ~i~~~~~~~ 177 (217)
++.+.+.+.
T Consensus 160 ~l~~~l~~~ 168 (182)
T cd04128 160 IVLAKAFDL 168 (182)
T ss_pred HHHHHHHhc
Confidence 999988753
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.5e-33 Score=200.14 Aligned_cols=162 Identities=48% Similarity=0.808 Sum_probs=147.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..+||+++|++|+|||||+++|..+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888888877888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i 170 (217)
|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+. .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876666899999999999987777788888888888875 58999999999999999999
Q ss_pred HHH
Q 027856 171 LTQ 173 (217)
Q Consensus 171 ~~~ 173 (217)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 865
No 46
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.1e-32 Score=203.94 Aligned_cols=164 Identities=35% Similarity=0.636 Sum_probs=143.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|.+|+|||||+++|+++.+.. .+.++.+..+....+.+++..+.+.+||++|++++..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 5778888777777888899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc----cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL----RAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
||++++.+++.+..|+..+.... .+.|+++|+||+|+... ..+..+++..++...++.++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999989999887653 47899999999998542 34556677888888888999999999999999999
Q ss_pred HHHHHHHHHH
Q 027856 169 EVLTQIYRVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
++.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999887544
No 47
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=7.2e-33 Score=199.10 Aligned_cols=160 Identities=52% Similarity=0.854 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
|++++.++..+..|+..+.....++.|+++|+||+|+...+.+..+++..++...++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999877766789999999999998777788888999999999999999999999999999999865
No 48
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1e-32 Score=207.40 Aligned_cols=165 Identities=32% Similarity=0.544 Sum_probs=147.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|.+|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999999998888899998888888878888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +.+..+++ .++...++.|+++||++|.|+.++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999998664 5799999999999964 33444544 6777788899999999999999999999
Q ss_pred HHHHHHHH
Q 027856 171 LTQIYRVV 178 (217)
Q Consensus 171 ~~~~~~~~ 178 (217)
++.+.+..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 98886543
No 49
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2e-32 Score=204.99 Aligned_cols=162 Identities=25% Similarity=0.467 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+|+|++|+|||||+.+|..+.+...+.+|.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999889898876654 56678899999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856 94 DVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|++++.+++.+ ..|...+.... ++.|+++|+||+|+.+. ..++.++...+++..++ .|+++||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999998 46777665543 58999999999999642 13678889999999996 799999999
Q ss_pred CCC-HHHHHHHHHHHHHHH
Q 027856 160 SMN-VENAFTEVLTQIYRV 177 (217)
Q Consensus 160 ~~~-i~~~~~~i~~~~~~~ 177 (217)
+.+ ++++|..++...+..
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 985 999999999987653
No 50
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=6e-32 Score=202.56 Aligned_cols=171 Identities=46% Similarity=0.731 Sum_probs=147.8
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC
Q 027856 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
+..+....+||+++|.+|+|||||+++|++..+. .+.++.+.++....+.+++..+.+.||||||++.+..++..+++.
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence 3445667899999999999999999999998874 456788888877778888888899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHH-HHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856 86 AVGALLVYDVTRHVTFENVER-WLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (217)
+|++++|||++++.+++.+.. |...+.... ..+.|+++|+||+|+...+.+..++...++...++.|+++||++|.|+
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999865 666655432 246799999999999876677778888888888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIYRV 177 (217)
Q Consensus 164 ~~~~~~i~~~~~~~ 177 (217)
+++|++|.+.+.+.
T Consensus 166 ~~l~~~l~~~~~~~ 179 (211)
T PLN03118 166 EQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 51
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.2e-32 Score=196.96 Aligned_cols=163 Identities=63% Similarity=0.968 Sum_probs=149.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+......+.|+++|+||+|+.....+..+.+..++...+++++++|+.+|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766689999999999997766777888888888889999999999999999999999988
Q ss_pred HHH
Q 027856 174 IYR 176 (217)
Q Consensus 174 ~~~ 176 (217)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 764
No 52
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2e-32 Score=201.50 Aligned_cols=165 Identities=32% Similarity=0.545 Sum_probs=141.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+|+|++|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999988887777666543 34444 6778999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc----cCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHH
Q 027856 93 YDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL----RAVSTEDATAFAERENT-FFMETSALESMNVENA 166 (217)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 166 (217)
||++++.|++.+. .|+..+.... .+.|+++|+||.|+... +.+..+++.+++...+. .++++||++|.|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 5888776543 57899999999998653 24567888889999887 8999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027856 167 FTEVLTQIYRVVSR 180 (217)
Q Consensus 167 ~~~i~~~~~~~~~~ 180 (217)
|..+++.+......
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999998866643
No 53
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.1e-32 Score=200.67 Aligned_cols=160 Identities=29% Similarity=0.484 Sum_probs=140.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888888876554 3566788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEEEecC
Q 027856 93 YDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFMETSAL 158 (217)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 158 (217)
||++++.+++.+. .|+..+.... ++.|+++|+||.|+.+. +.+..++++++++..+ ..|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999986 5988887654 47999999999998653 4567788888888887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027856 159 ESMNVENAFTEVLTQI 174 (217)
Q Consensus 159 ~~~~i~~~~~~i~~~~ 174 (217)
+|.|++++|+.+++.+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 54
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.2e-32 Score=198.16 Aligned_cols=160 Identities=34% Similarity=0.560 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||++++..+.+...+.+|.+ +.....+.+++..+.+.+|||||++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777765 344556677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++.+++++||++|.|+.++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 57899999999999776667777788888888889999999999999999999987
Q ss_pred HH
Q 027856 173 QI 174 (217)
Q Consensus 173 ~~ 174 (217)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.9e-32 Score=196.04 Aligned_cols=159 Identities=36% Similarity=0.641 Sum_probs=143.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD--DKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
+||+++|.+|+|||||+++|+++.+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888888888877777666 778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
|||++++++++.+..|+..+.... .+.|+++|+||.|+.....+..+++..++...+++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999887544 4799999999999987777788888999999999999999999999999999987
Q ss_pred HH
Q 027856 172 TQ 173 (217)
Q Consensus 172 ~~ 173 (217)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 54
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=5.3e-32 Score=196.22 Aligned_cols=162 Identities=35% Similarity=0.612 Sum_probs=143.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|||||||+++|+.+.+...+.+|.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999999988887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 95 VTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRA--VSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
++++.+++.+..|+..+.... ....|+++|+||.|+..... ...+++..++.+.+..++++||++|.|+.++|+.+.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876543 33578999999999965433 345566777888888999999999999999999999
Q ss_pred HHHHH
Q 027856 172 TQIYR 176 (217)
Q Consensus 172 ~~~~~ 176 (217)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4.5e-32 Score=195.93 Aligned_cols=160 Identities=34% Similarity=0.628 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888888777777888899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+..... +.|+++|+||+|+.+ ..+.. +..+++...++.++++||++|.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987764 899999999999974 33333 3455666777889999999999999999999988
Q ss_pred HHH
Q 027856 174 IYR 176 (217)
Q Consensus 174 ~~~ 176 (217)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 764
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=3.8e-32 Score=195.91 Aligned_cols=161 Identities=31% Similarity=0.535 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888777777776544 356677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
|.+++.+++.+..|+..+.... ..+.|+++|+||+|+.....+..+++..+++..+.+++++||++|.|+.++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887643 357999999999999876667777788888888899999999999999999999987
Q ss_pred HHH
Q 027856 173 QIY 175 (217)
Q Consensus 173 ~~~ 175 (217)
.+.
T Consensus 161 ~l~ 163 (164)
T cd04175 161 QIN 163 (164)
T ss_pred Hhh
Confidence 653
No 59
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=6.6e-32 Score=194.00 Aligned_cols=160 Identities=39% Similarity=0.755 Sum_probs=146.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+......+.|+++++||+|+.+......++...++...++.++++||+++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877665579999999999997666778888888888888999999999999999999999864
No 60
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-32 Score=181.87 Aligned_cols=179 Identities=49% Similarity=0.848 Sum_probs=169.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++-+++|+-|+|||.|+..|....|....+.+++.++-...+.+.+..+++++|||+|+++++...+.+++.+-+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 35678999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
+.|||+..+.+++.+..|+...+....++..+++++||.|+...+.+..+++++|+.++|..++++||++|.|+++.|-.
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCC
Q 027856 170 VLTQIYRVVSRKALEIGDD 188 (217)
Q Consensus 170 i~~~~~~~~~~~~~~~~~~ 188 (217)
..+.++++....-+.+...
T Consensus 168 ~akkiyqniqdgsldlnaa 186 (215)
T KOG0097|consen 168 TAKKIYQNIQDGSLDLNAA 186 (215)
T ss_pred HHHHHHHhhhcCcccccch
Confidence 9999999988877766654
No 61
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.2e-31 Score=193.12 Aligned_cols=162 Identities=51% Similarity=0.849 Sum_probs=148.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998887778888888888888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
+|++++.+++.+..|+..+........|+++++||+|+........++...++...++.++++||++|.|+.++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998776668999999999999866677788888888888899999999999999999999998
Q ss_pred HH
Q 027856 173 QI 174 (217)
Q Consensus 173 ~~ 174 (217)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 62
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=9.6e-32 Score=194.93 Aligned_cols=162 Identities=41% Similarity=0.709 Sum_probs=144.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|++|+|||||+++|+++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35699999999999999999999999998888788888877778888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNVEN 165 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~ 165 (217)
+|||++++.+++.+..|+..+..... .+.|+++|+||.|+. .+.+..+++.+++...+ ..++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999988765432 468999999999997 35677888899988887 4799999999999999
Q ss_pred HHHHHHHH
Q 027856 166 AFTEVLTQ 173 (217)
Q Consensus 166 ~~~~i~~~ 173 (217)
+|+++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999865
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=4.7e-32 Score=195.25 Aligned_cols=160 Identities=33% Similarity=0.535 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
++|+++|.+|+|||||+++++.+.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999998877767664 455567777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.....+...+...++...+.+++++||++|.|+.++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876542 57999999999999766666777778888878889999999999999999999987
Q ss_pred HH
Q 027856 173 QI 174 (217)
Q Consensus 173 ~~ 174 (217)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 64
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=9.9e-32 Score=193.23 Aligned_cols=160 Identities=34% Similarity=0.598 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|+++.+.+.+.++.+.+.....+.+++..+.+.+|||+|++.+..++..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988877777777777777778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+.... .+.|+++|+||+|+... ...+...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987643 47899999999998431 1344556667778899999999999999999999988
Q ss_pred HHHH
Q 027856 174 IYRV 177 (217)
Q Consensus 174 ~~~~ 177 (217)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8765
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=7.7e-32 Score=194.56 Aligned_cols=158 Identities=35% Similarity=0.521 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..++..+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998777777765443 344556777889999999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+...+++..+++..++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999998887766432 578999999999997766777778888888888899999999999999999999
Q ss_pred HH
Q 027856 171 LT 172 (217)
Q Consensus 171 ~~ 172 (217)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 66
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.1e-31 Score=198.57 Aligned_cols=171 Identities=31% Similarity=0.550 Sum_probs=145.8
Q ss_pred EcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh
Q 027856 19 IGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH 98 (217)
Q Consensus 19 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 98 (217)
+|.+|||||||+++|+.+.+...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988888889999888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 99 VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 99 ~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
.|++.+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..++...++.|+++||++|.|+.++|+++++.+.+..
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~ 157 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 157 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999998765 4899999999999865 3444443 4677778899999999999999999999999886542
Q ss_pred hhhhhccCCCCCCCCCC
Q 027856 179 SRKALEIGDDPAALPKG 195 (217)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (217)
.+.....++..|++
T Consensus 158 ---~~~~~~~~~~~~~~ 171 (200)
T smart00176 158 ---NLEFVAMPALAPPE 171 (200)
T ss_pred ---cceeccCcccCCcc
Confidence 23334444444444
No 67
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=8.4e-32 Score=195.81 Aligned_cols=158 Identities=33% Similarity=0.518 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+.+++.+.+...+.++.+. .....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999998888788753 33445667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856 94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|++++.|++.+. .|+..+.... ++.|+++|+||.|+.+. +.+..+++..++.+.+. .++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 6888876654 47999999999999542 24778889999999884 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQ 173 (217)
Q Consensus 160 ~~~i~~~~~~i~~~ 173 (217)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999864
No 68
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.9e-31 Score=193.47 Aligned_cols=162 Identities=39% Similarity=0.700 Sum_probs=146.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-hhhhhhhcCCcEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-AITSAYYRGAVGALL 91 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~ii~ 91 (217)
.++|+++|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+|||+|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999999888888888888888888889988999999999999887 578889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC---CCCHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE---SMNVENAF 167 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~ 167 (217)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++|+++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887654 35799999999999987777888888889988889999999999 88999999
Q ss_pred HHHHHHH
Q 027856 168 TEVLTQI 174 (217)
Q Consensus 168 ~~i~~~~ 174 (217)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998755
No 69
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.3e-31 Score=193.15 Aligned_cols=161 Identities=37% Similarity=0.590 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|||||||+++|.+..+...+.++.+.. ......+++..+.+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999998887776766533 3455667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+.+++++||++|.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999998888765433 47899999999999876667778888888888899999999999999999999997
Q ss_pred HHH
Q 027856 173 QIY 175 (217)
Q Consensus 173 ~~~ 175 (217)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2e-31 Score=192.07 Aligned_cols=161 Identities=35% Similarity=0.576 Sum_probs=140.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999988777767665443 44456788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.....+..++..+++...+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 35789999999999977666777778888888889999999999999999999998
Q ss_pred HHH
Q 027856 172 TQI 174 (217)
Q Consensus 172 ~~~ 174 (217)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 71
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.2e-31 Score=197.68 Aligned_cols=160 Identities=36% Similarity=0.544 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
.||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 37999999999999999999999998888788766543 44566788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcC-CcEEEEecCC
Q 027856 94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAEREN-TFFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 159 (217)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+ .+..++...++...+ +.|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999886 5888887654 479999999999996543 345667777887776 6899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQIY 175 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~~ 175 (217)
|.|++++|.++.+.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998886
No 72
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3e-31 Score=190.58 Aligned_cols=159 Identities=33% Similarity=0.546 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6999999999999999999999998877777776443 455667888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.....++..++...+.+++++||++|.|++++|+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999888888876543 4789999999999976 455677788888888899999999999999999999986
Q ss_pred HH
Q 027856 173 QI 174 (217)
Q Consensus 173 ~~ 174 (217)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 53
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.1e-31 Score=189.99 Aligned_cols=160 Identities=33% Similarity=0.584 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC--cCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+||+++|++|||||||+++|... .+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777888888888777777664 56789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+....++...++..+....++.++++||++|.|++++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999987764 478999999999997766677777777777788899999999999999999999
Q ss_pred HHHH
Q 027856 171 LTQI 174 (217)
Q Consensus 171 ~~~~ 174 (217)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.3e-31 Score=197.04 Aligned_cols=165 Identities=21% Similarity=0.290 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhhhhhcC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR--------AITSAYYRG 85 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ 85 (217)
+||+|+|.+|||||||+++|+++.+...+.++.+.+.....+.+++..+.+.+|||||...+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888888777666667788888999999999964331 123345789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-HcCCcEEEEecCCCC
Q 027856 86 AVGALLVYDVTRHVTFENVERWLKELRDHT---DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-RENTFFMETSALESM 161 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 161 (217)
+|++++|||++++.|++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++. .++++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 3579999999999997766666777766654 568899999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQIYRVV 178 (217)
Q Consensus 162 ~i~~~~~~i~~~~~~~~ 178 (217)
|+.++|+.+++.++.+-
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998887443
No 75
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=6.8e-31 Score=188.71 Aligned_cols=161 Identities=40% Similarity=0.697 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|++..+...+.++.+.......+.+.+..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777677766776677777787889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++...+..++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776689999999999998766777788888888889999999999999999999999876
Q ss_pred H
Q 027856 174 I 174 (217)
Q Consensus 174 ~ 174 (217)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=9e-31 Score=190.02 Aligned_cols=165 Identities=41% Similarity=0.721 Sum_probs=145.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888887777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNVENAFT 168 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~ 168 (217)
|++++.+++.+..|...+..... .+.|+++|+||+|+..++....++...+....+ ..++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999888888877655442 378999999999998656667788888888877 7899999999999999999
Q ss_pred HHHHHHHHHH
Q 027856 169 EVLTQIYRVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
++.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999888763
No 77
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-33 Score=187.96 Aligned_cols=197 Identities=37% Similarity=0.661 Sum_probs=168.2
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC---------CeEEEEEEEeCCChhhhhh
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD---------DKIVKAQIWDTAGQERYRA 77 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~ 77 (217)
+-+.+..|+.+.+|++|+|||+++.+++.+.|......|.|+++....+-++ +..+.+++|||+|++++++
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 4456778999999999999999999999999999999999999988887663 4468999999999999999
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEe
Q 027856 78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETS 156 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (217)
+..++++.+=++++++|+++..||-++.+|+..+..+.- .+..+++++||+|+.+.+.++.+++.+++++++++||++|
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 999999999999999999999999999999999976543 4667899999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccC
Q 027856 157 ALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKD 204 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (217)
|-+|.|+++..+.++..++++..+. .+...-|-..-+++.-.+..++
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie~~-v~~s~~p~~~~~~~~g~~~~e~ 209 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIEQC-VEKSEIPLLVTRSNCGHLDGEE 209 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHH-HhhcccchhhhccccccCCCCC
Confidence 9999999999999999988876654 2222333344444444444443
No 78
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=8.4e-31 Score=199.71 Aligned_cols=160 Identities=24% Similarity=0.427 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|+++.+...+.+|.+ +.....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999887777775 455566778888899999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-cCCcEEEEecCCCCCH
Q 027856 94 DVTRHVTFENVERWLKELRDH---------TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-ENTFFMETSALESMNV 163 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 163 (217)
|++++.|++.+..|+..+... ...+.|+++|+||+|+...+++..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 224789999999999986667788888877764 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 164 ENAFTEVLTQI 174 (217)
Q Consensus 164 ~~~~~~i~~~~ 174 (217)
+++|++|+..+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999754
No 79
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=7.4e-31 Score=193.66 Aligned_cols=158 Identities=25% Similarity=0.389 Sum_probs=129.8
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhhCc-----CCCCCccccee-EeEEEE--------EEECCeEEEEEEEeCCChhhhhh
Q 027856 13 LFKVVLIGDSGVGKSNLLS-RFTRNE-----FSLESKSTIGV-EFATRS--------IRCDDKIVKAQIWDTAGQERYRA 77 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~ 77 (217)
.+||+++|++|+|||||+. ++.++. +...+.+|.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 665543 34556677642 322222 25688899999999999875 3
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------ccCCC
Q 027856 78 ITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH-------------------LRAVS 137 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~ 137 (217)
....+++++|++++|||++++.|++.+. .|+..+.... ++.|+++|+||+|+.+ .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999996 5999887654 4789999999999864 36788
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 138 TEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
.++++++++.+++.|+++||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999864
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=7.5e-31 Score=190.92 Aligned_cols=158 Identities=34% Similarity=0.558 Sum_probs=137.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEEC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (217)
|+|+|++|+|||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999887777765443 44566788889999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 027856 96 TRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALESM 161 (217)
Q Consensus 96 ~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (217)
+++.|++.+. .|+..+.... ++.|+++|+||+|+... ..++.+++.+++...+. .++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 5898887654 58999999999999652 23677888889999886 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQIY 175 (217)
Q Consensus 162 ~i~~~~~~i~~~~~ 175 (217)
|++++|+.+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998775
No 81
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=4.9e-30 Score=185.73 Aligned_cols=164 Identities=43% Similarity=0.783 Sum_probs=146.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887777788888887778888888889999999999999998899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....+.+.....++++||++|.|+.++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766679999999999998766777776777777777889999999999999999999
Q ss_pred HHHH
Q 027856 171 LTQI 174 (217)
Q Consensus 171 ~~~~ 174 (217)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8754
No 82
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=2.3e-30 Score=185.99 Aligned_cols=159 Identities=52% Similarity=0.863 Sum_probs=142.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999987777788888887777778888899999999999999998999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++..+++...+++++++|+++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999988999887664 35799999999999974 456677888888888999999999999999999999986
Q ss_pred H
Q 027856 173 Q 173 (217)
Q Consensus 173 ~ 173 (217)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=9.7e-31 Score=189.43 Aligned_cols=162 Identities=21% Similarity=0.213 Sum_probs=139.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
..+||+++|.+|+|||||+++|+++.+. ..+.+|.+.++....+.+++..+.+.+||++|++.+..++..++..+|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 5689999999999999999999999998 788888888877777778888889999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~ 169 (217)
+|+|++++.+++.+..|+..+... .+.|+++|+||+|+.+.......+..+++...++. ++++||++|.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999888888876432 37999999999999654444444566777777764 799999999999999999
Q ss_pred HHHHHH
Q 027856 170 VLTQIY 175 (217)
Q Consensus 170 i~~~~~ 175 (217)
+.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998765
No 84
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=3.3e-30 Score=184.17 Aligned_cols=158 Identities=56% Similarity=0.908 Sum_probs=145.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888889898888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
|++++.+++.+..|+..+......+.|+++++||+|+........++...++...+..++++|++++.|+.++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999887656799999999999975566778888888888889999999999999999999986
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=2.9e-30 Score=186.87 Aligned_cols=161 Identities=34% Similarity=0.528 Sum_probs=141.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
++|+++|.+|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..+++.++++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999999877777776644 3566677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
|++++.+++.+..|...+.... ..+.|+++++||.|+.+.+.+..++...+++..+ ++++++||++|.|++++|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887643 3579999999999998767777788888888887 7899999999999999999999
Q ss_pred HHHH
Q 027856 172 TQIY 175 (217)
Q Consensus 172 ~~~~ 175 (217)
..+.
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 8665
No 86
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=2.6e-30 Score=194.57 Aligned_cols=165 Identities=29% Similarity=0.363 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc-CCcEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR-GAVGALL 91 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~ii~ 91 (217)
+||+++|++|+|||||+++|..+.+. ..+.++.+.+.....+.+++..+.+.+|||+|++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 66666665567777788888889999999999872 33445666 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++...++.++++||++|.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887654 2579999999999998777778888888888888999999999999999999999
Q ss_pred HHHHHHHHhh
Q 027856 171 LTQIYRVVSR 180 (217)
Q Consensus 171 ~~~~~~~~~~ 180 (217)
++.+......
T Consensus 159 ~~~~~~~~~~ 168 (221)
T cd04148 159 VRQIRLRRDS 168 (221)
T ss_pred HHHHHhhhcc
Confidence 9888755444
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.3e-30 Score=188.08 Aligned_cols=160 Identities=35% Similarity=0.526 Sum_probs=135.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-hhhhhhhhhcCCcEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-YRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~ 93 (217)
+|+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||++. .......+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999999888766666654333 45566788888999999999875 3445677889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC-CCHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES-MNVENAFTEV 170 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~i 170 (217)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+.+|+++||++| .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887654 357999999999999776777888888899888999999999999 5999999999
Q ss_pred HHHHH
Q 027856 171 LTQIY 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 97654
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=2.5e-30 Score=185.08 Aligned_cols=153 Identities=21% Similarity=0.363 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+.+++.+.+...+.++ +..+ ...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998887766444 2233 46677888888999999999864 23568899999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC--ccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH--LRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
|++++.|++.+..|+..+..... .+.|+++|+||.|+.. .+.+..++++++++.. ++.|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987653 5789999999999853 4677888888888776 489999999999999999999
Q ss_pred HHHH
Q 027856 170 VLTQ 173 (217)
Q Consensus 170 i~~~ 173 (217)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=5.8e-30 Score=186.16 Aligned_cols=157 Identities=33% Similarity=0.554 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||++++.++.+...+.+|. .+.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999998888777765 4455556778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856 94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|++++.+++.+. .|+..+.... .+.|+++|+||.|+.. .+.+..+++..+++..+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999884 6888887543 4799999999999863 345677888899998887 799999999
Q ss_pred CCCHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLT 172 (217)
Q Consensus 160 ~~~i~~~~~~i~~ 172 (217)
|.|++++|+.++.
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998874
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=5.2e-30 Score=186.49 Aligned_cols=159 Identities=30% Similarity=0.484 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|..+.+...+.++... .....+.+++..+.+.+|||||++.+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999987777666543 33446677888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856 94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|.+++.+++.+. .|+..+... ..+.|+++|+||+|+.+. ..+..+++..+++..+. .++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 688888765 568999999999998542 25667888888888885 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~ 174 (217)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999865
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=6.1e-29 Score=178.94 Aligned_cols=161 Identities=36% Similarity=0.541 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++++...+...+.++.+.. .......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999998877776665543 3445567888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.........+...+...++++++++||++|.|+.++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999988888887653 247999999999999765556677777888888899999999999999999999987
Q ss_pred HHH
Q 027856 173 QIY 175 (217)
Q Consensus 173 ~~~ 175 (217)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 765
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.4e-29 Score=179.49 Aligned_cols=158 Identities=35% Similarity=0.568 Sum_probs=140.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|++|||||||++++++..+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999887777767665 5556666777777899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 95 VTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
.+++++++.+..|+..+..... ...|+++|+||+|+........+++..++...+.+++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999998888877654 589999999999998766777888888888888899999999999999999999875
No 93
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.9e-31 Score=176.67 Aligned_cols=162 Identities=44% Similarity=0.720 Sum_probs=150.5
Q ss_pred EEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEEC
Q 027856 17 VLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95 (217)
Q Consensus 17 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (217)
+++|++++|||.|+-|+..+-|. .....|.|+++....+..++..+++++|||+|++++++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999888877664 45678999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 96 TRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 96 ~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
.+..||++.+.|+.++.++....+.+.+++||+|+..++.+..++.+.++..+++++.++||++|-|++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999988778889999999999988999999999999999999999999999999999999998887
Q ss_pred HHH
Q 027856 176 RVV 178 (217)
Q Consensus 176 ~~~ 178 (217)
+..
T Consensus 161 k~~ 163 (192)
T KOG0083|consen 161 KLK 163 (192)
T ss_pred Hhc
Confidence 553
No 94
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=9e-29 Score=181.39 Aligned_cols=165 Identities=20% Similarity=0.340 Sum_probs=131.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
.++|+++|.+|||||||++++..+.+... .+|.+.+.....+.. ++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998887654 466665555555543 4466899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH------cCCcEEEEecCCCCCHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER------ENTFFMETSALESMNVE 164 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~ 164 (217)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++...+... .+.+++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999999888888887766543 24799999999999864 2344545444321 12458899999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027856 165 NAFTEVLTQIYRVVSR 180 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~ 180 (217)
++|++|++.+.+.+..
T Consensus 160 ~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 160 EGLEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998766654
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=5.3e-29 Score=180.14 Aligned_cols=154 Identities=19% Similarity=0.362 Sum_probs=122.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||||+++|..+.+.. +.+|.+.+.. .+.. ..+.+.+|||||++.+..++..++..+|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999998877643 4566666543 2323 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~ 165 (217)
|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+ ....+++.++... ....++++||++|.|+.+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 99999999998887766665432 235789999999999865 3456666665432 234689999999999999
Q ss_pred HHHHHHH
Q 027856 166 AFTEVLT 172 (217)
Q Consensus 166 ~~~~i~~ 172 (217)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=2.8e-28 Score=178.39 Aligned_cols=164 Identities=37% Similarity=0.517 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
.||+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999887766666654433 445566777789999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
|.++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+.+++++||+++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999988877776643 357899999999999766666777777788888889999999999999999999998
Q ss_pred HHHHHH
Q 027856 173 QIYRVV 178 (217)
Q Consensus 173 ~~~~~~ 178 (217)
.+....
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 776443
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.6e-28 Score=177.73 Aligned_cols=159 Identities=30% Similarity=0.502 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
.||+++|++|||||||+++|.++.+...+.++.+... ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999998887877776544 345667888889999999999999988888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856 94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|++++.+++.+. .|+..+.... .+.|+++|+||.|+... ..+...+.++++...+. .++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 5888776543 47899999999998542 22445667777777764 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~ 174 (217)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 98
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.9e-28 Score=180.32 Aligned_cols=163 Identities=34% Similarity=0.527 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
.||+++|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+.......+..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888776666654443 345566788889999999999888877777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------ccCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 027856 94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH----------LRAVSTEDATAFAERENT-FFMETSALESM 161 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (217)
|+++.++++.+. .|+..+.... ++.|+++|+||+|+.+ .+.+..++...++...+. .||++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 5999887655 4699999999999854 234556778888888885 79999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQIYRVV 178 (217)
Q Consensus 162 ~i~~~~~~i~~~~~~~~ 178 (217)
|++++|+++.+.++..+
T Consensus 160 ~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 160 GVDDVFEAATRAALLVR 176 (187)
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999998887544
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.6e-28 Score=182.20 Aligned_cols=160 Identities=32% Similarity=0.448 Sum_probs=134.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|+|||||+++|++..+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999998877766654 3445566778888899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-ccCCCHHHHHHHHH-HcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 95 VTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH-LRAVSTEDATAFAE-RENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..++..+... ..+..++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877654 4799999999999965 34455555554443 4467899999999999999999999
Q ss_pred HHHH
Q 027856 172 TQIY 175 (217)
Q Consensus 172 ~~~~ 175 (217)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8665
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.6e-28 Score=178.85 Aligned_cols=157 Identities=20% Similarity=0.360 Sum_probs=122.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|.+|+|||||+++|..+.+. .+.+|.+.+.. .+.. ..+.+.+|||||++.+..++..+++++|+++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34699999999999999999999877764 35567665543 3333 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 164 (217)
+|+|++++.+++....|+..+... ...+.|+++|+||.|+.+. ...+++..... ...+.++++||++|.|+.
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999887777766432 2247899999999998652 23334333322 123347789999999999
Q ss_pred HHHHHHHHHH
Q 027856 165 NAFTEVLTQI 174 (217)
Q Consensus 165 ~~~~~i~~~~ 174 (217)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 101
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.2e-28 Score=178.64 Aligned_cols=156 Identities=22% Similarity=0.387 Sum_probs=126.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|||||||+++|.+..+.. +.+|.+.... .+.+ ..+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987654 5566665543 3333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC------CcEEEEecCCCCCHHHHH
Q 027856 95 VTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN------TFFMETSALESMNVENAF 167 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 167 (217)
.+++.++..+..|+..+.... ..+.|+++|+||.|+.+ .+..+++.+++...+ ..++++||++|.|+.++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999988888876432 24689999999999965 456676766654322 258899999999999999
Q ss_pred HHHHHHHHHH
Q 027856 168 TEVLTQIYRV 177 (217)
Q Consensus 168 ~~i~~~~~~~ 177 (217)
++|.+.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998876643
No 102
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.3e-28 Score=178.75 Aligned_cols=159 Identities=18% Similarity=0.333 Sum_probs=123.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|.+|||||||+++|..+.+. .+.+|.+.+.. .+.. ..+.+.+||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999987765 35577665543 3333 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-----CcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-----TFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 164 (217)
+|||++++.+++.+..++..+... ...+.|+++++||.|+.+. ...++......... ..++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998887766665432 2247899999999998653 34444443332211 236689999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYR 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
++|++|.+.+..
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999877653
No 103
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2e-29 Score=181.66 Aligned_cols=153 Identities=18% Similarity=0.307 Sum_probs=125.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
.|+++|.+|+|||||+++|.+..+...+.+|.+... ..+++..+.+.+||++|++.+...+..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999888777778877543 2334456899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH----HHHHHHHHHcCCcEEEEecCC------CCCHH
Q 027856 95 VTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST----EDATAFAERENTFFMETSALE------SMNVE 164 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~ 164 (217)
.+++.++..+..|+..+.... .++|+++|+||.|+...+.+.. .++..++...++.++++||++ ++|+.
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999988888888876443 5899999999999976443221 223455556678899999998 99999
Q ss_pred HHHHHHHH
Q 027856 165 NAFTEVLT 172 (217)
Q Consensus 165 ~~~~~i~~ 172 (217)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998864
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=1.9e-28 Score=175.69 Aligned_cols=152 Identities=19% Similarity=0.375 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||++++..+.+. .+.+|.+.+.. .+.+ ..+.+.+||+||++++...+..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999887775 35677665543 2333 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVENAF 167 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
|++++.+++.+..++..+... .....|+++++||.|+.+. ...++...... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999887766665432 2246899999999999652 23333322221 123457899999999999999
Q ss_pred HHHHH
Q 027856 168 TEVLT 172 (217)
Q Consensus 168 ~~i~~ 172 (217)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 105
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=7.9e-28 Score=177.85 Aligned_cols=147 Identities=24% Similarity=0.420 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-----CeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-----DKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+||+++|.+|+|||||+++|.++.+...+.+|.+.+.....+.++ +..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888998887777766663 567899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCccCCCHHH----HHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHT-------------------DSNIVIMLVGNKADLRHLRAVSTED----ATAFA 145 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~ 145 (217)
+|+|||++++.|++.+..|+..+.... ....|+++|+||.|+.+++.++.+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987532 2468999999999997765555443 44667
Q ss_pred HHcCCcEEEEecCCC
Q 027856 146 ERENTFFMETSALES 160 (217)
Q Consensus 146 ~~~~~~~~~~Sa~~~ 160 (217)
+..+++.++.++.++
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 788999988888754
No 106
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.2e-27 Score=179.70 Aligned_cols=177 Identities=31% Similarity=0.529 Sum_probs=149.5
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
..+....+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+|||+|++.+...+..++..+
T Consensus 3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 34556679999999999999999999999888888889999888888887888889999999999999988899999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
+++++|||+++..++..+..|+..+.... .+.|+++++||+|+.+ .....+ ...++...++.++++|+++|.|++++
T Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999887654 4789999999999865 233333 34566777888999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCC
Q 027856 167 FTEVLTQIYRVVSRKALEIGDDP 189 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~~ 189 (217)
|.+|.+.+.. +....+.+.|
T Consensus 160 f~~ia~~l~~---~p~~~~ldEp 179 (215)
T PTZ00132 160 FLWLARRLTN---DPNLVFVGAP 179 (215)
T ss_pred HHHHHHHHhh---cccceecCCc
Confidence 9999988764 3444454444
No 107
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=178.83 Aligned_cols=166 Identities=34% Similarity=0.513 Sum_probs=152.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||+|+.+|....|...|.+|.+ +.+...+.+++....+.|+||+|++++..+...++...|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999987 6667777789999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
||+++++.||+.+..++..+..... ..+|+++|+||+|+...+.+..++.+.++..+++.|+++||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999855443 467999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027856 171 LTQIYRVV 178 (217)
Q Consensus 171 ~~~~~~~~ 178 (217)
++.+...+
T Consensus 161 ~r~~~~~~ 168 (196)
T KOG0395|consen 161 VREIRLPR 168 (196)
T ss_pred HHHHHhhh
Confidence 98877633
No 108
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=8.7e-28 Score=174.16 Aligned_cols=157 Identities=34% Similarity=0.572 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|++..+...+.++.. +.....+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998666656654 334455567788899999999999988888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc-----------CCCHHHHHHHHHHcCC-cEEEEecCCC
Q 027856 94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR-----------AVSTEDATAFAERENT-FFMETSALES 160 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 160 (217)
|++++.++.... .|+..+.... .+.|+++|+||+|+.... .+..++...++...+. .++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999988764 5777776654 379999999999996543 2356677778888877 8999999999
Q ss_pred CCHHHHHHHHHH
Q 027856 161 MNVENAFTEVLT 172 (217)
Q Consensus 161 ~~i~~~~~~i~~ 172 (217)
.|+.++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1e-27 Score=175.54 Aligned_cols=159 Identities=21% Similarity=0.361 Sum_probs=122.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..+||+++|++|||||||++++..+.+.. +.+|.+.+.. .+.. ..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998777654 4567665543 3333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~ 165 (217)
|+|++++.+++.+..++..+... ...+.|+++|+||.|+.+ ....+++...... ..+.++++||++|.|+.+
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999998887766655332 224689999999999864 2333333222211 123467899999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 166 AFTEVLTQIYRV 177 (217)
Q Consensus 166 ~~~~i~~~~~~~ 177 (217)
+|++|.+.+.+.
T Consensus 169 ~~~~l~~~i~~~ 180 (182)
T PTZ00133 169 GLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999877643
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.4e-27 Score=172.43 Aligned_cols=160 Identities=31% Similarity=0.401 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|.++.+...+..+. ........+++..+.+.+|||||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998866543322 222344455677789999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC--HHHHHHHHHHc-C-CcEEEEecCCCCCHHHHHH
Q 027856 94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRAVS--TEDATAFAERE-N-TFFMETSALESMNVENAFT 168 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~~~ 168 (217)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..... .++........ + ..++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 6888877654 489999999999997644321 22333333333 2 3699999999999999999
Q ss_pred HHHHHHHH
Q 027856 169 EVLTQIYR 176 (217)
Q Consensus 169 ~i~~~~~~ 176 (217)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887653
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.1e-27 Score=174.09 Aligned_cols=156 Identities=19% Similarity=0.355 Sum_probs=123.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|++|+|||||+++|.+..+. .+.+|.+.. ...+.++ .+.+.+|||||++.+...+..++..+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 345689999999999999999999988553 444665533 3344444 37899999999999998999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNV 163 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 163 (217)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 9999999999998887777776432 2357999999999999653 24555555543 23567999999999999
Q ss_pred HHHHHHHHH
Q 027856 164 ENAFTEVLT 172 (217)
Q Consensus 164 ~~~~~~i~~ 172 (217)
+++|++++.
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 112
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=2.3e-28 Score=175.88 Aligned_cols=164 Identities=35% Similarity=0.547 Sum_probs=149.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
...+|++|||+.++|||+|+-.+..+.|+..|.||.- +.+...+.++ +..+.+.+|||+|+++|..++...|.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3468999999999999999999999999999999985 7778888895 9999999999999999999888899999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEEE
Q 027856 90 LLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFMET 155 (217)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 155 (217)
++||++.++.|++++ ..|+.++...+ ++.|+++|++|.|+.+. ..+..++....+.+.| ..|+++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999997 56999999887 69999999999999742 3677888999999999 559999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 027856 156 SALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 156 Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
||++..|++++|+..++.+..
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999999998874
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=3.1e-27 Score=169.80 Aligned_cols=152 Identities=18% Similarity=0.336 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC-CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+|+++|++|||||||+++|.+..+ ...+.+|.+..... +. ...+.+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998763 44566776654322 22 23478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHT---DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVEN 165 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 165 (217)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... .....++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999888877777765432 2479999999999986532 2333322221 1123589999999999999
Q ss_pred HHHHHHH
Q 027856 166 AFTEVLT 172 (217)
Q Consensus 166 ~~~~i~~ 172 (217)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1.5e-26 Score=168.32 Aligned_cols=153 Identities=22% Similarity=0.362 Sum_probs=119.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.++|+++|++|+|||||+++++.+.+.. +.++.+.+.. .+.++ .+.+.+||+||++.+...+..+++.+|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5799999999999999999999887764 4466665543 33334 47899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNVENA 166 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
+|++++.++.....++..+.... ..+.|+++++||+|+.+ ....++..+.. ...++.++++||++|.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 99999998887776666554332 24689999999999865 22344433222 123456999999999999999
Q ss_pred HHHHHH
Q 027856 167 FTEVLT 172 (217)
Q Consensus 167 ~~~i~~ 172 (217)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=3.4e-27 Score=170.56 Aligned_cols=151 Identities=23% Similarity=0.362 Sum_probs=119.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
+|+++|.+|||||||+++|.+. +...+.+|.+... ..+... .+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999987 6666777777553 344443 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHH------HHHHHcC--CcEEEEecCCC-----
Q 027856 95 VTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDAT------AFAEREN--TFFMETSALES----- 160 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~--~~~~~~Sa~~~----- 160 (217)
++++.+++.+..|+..+..... .++|+++|+||.|+.+.. ...+.. .++.+.+ +.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999888888765432 478999999999996633 222222 2222222 45788999998
Q ss_pred -CCHHHHHHHHHH
Q 027856 161 -MNVENAFTEVLT 172 (217)
Q Consensus 161 -~~i~~~~~~i~~ 172 (217)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999974
No 116
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=4.4e-26 Score=165.58 Aligned_cols=142 Identities=36% Similarity=0.683 Sum_probs=128.0
Q ss_pred CcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc
Q 027856 36 NEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT 115 (217)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~ 115 (217)
+.|...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788999999988888889999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856 116 DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 116 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 177 (217)
....|+++|+||+|+.+.+.+..+++..++..++..++++||++|.|+.++|++|.+.+.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56789999999999977667788888888888888999999999999999999999888653
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.1e-26 Score=166.70 Aligned_cols=152 Identities=23% Similarity=0.417 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
+|+++|++|+|||||+++|.+..+... .+|.+.+.. .+... ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999987543 466554432 33332 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHH------HHcCCcEEEEecCCCCCHHHHH
Q 027856 95 VTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFA------ERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
++++.++..+..|+..+.... ..+.|+++|+||+|+... ...++..... ...+..++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999998888877777765432 247999999999998542 2333333222 1133468999999999999999
Q ss_pred HHHHH
Q 027856 168 TEVLT 172 (217)
Q Consensus 168 ~~i~~ 172 (217)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=2e-26 Score=166.51 Aligned_cols=152 Identities=22% Similarity=0.392 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCC------CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFS------LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+|+++|++|+|||||+++|.+.... ..+.++.+... ..+.++ ...+.+|||||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999875321 22334444443 334444 3689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-------cCCcEEEEecCCC
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER-------ENTFFMETSALES 160 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 160 (217)
+++|+|++++.++.....|+..+.... ..+.|+++++||+|+.. ....++...+... .+.+++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888877777765432 35799999999999865 3344555444332 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 027856 161 MNVENAFTEVLT 172 (217)
Q Consensus 161 ~~i~~~~~~i~~ 172 (217)
.|++++|++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=4.4e-26 Score=168.15 Aligned_cols=155 Identities=20% Similarity=0.301 Sum_probs=123.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+||+||+..+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988764 344555443 33444454 688999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH----------------cCCcEEE
Q 027856 92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER----------------ENTFFME 154 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 154 (217)
|+|+++..++.....++..+.... ..+.|+++++||+|+.. .+..++.+..... ....+++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 999999988887777777765433 24699999999999864 4556666665542 2245899
Q ss_pred EecCCCCCHHHHHHHHHHH
Q 027856 155 TSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 155 ~Sa~~~~~i~~~~~~i~~~ 173 (217)
+||++|.|+.++|+++.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999865
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2e-26 Score=165.02 Aligned_cols=151 Identities=21% Similarity=0.383 Sum_probs=119.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|||||||++++++... ..+.++.+.... .+.+. .+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999984 344556554443 33344 3689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHH
Q 027856 95 VTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
++++.++.....|+..+.... ..+.|+++|+||+|+.... ..++..+... ....+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999988877777665532 3578999999999987633 3334433332 2345799999999999999999
Q ss_pred HHHH
Q 027856 169 EVLT 172 (217)
Q Consensus 169 ~i~~ 172 (217)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=9.1e-26 Score=174.72 Aligned_cols=143 Identities=24% Similarity=0.462 Sum_probs=123.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-------------CeEEEEEEEeCCChhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-------------DKIVKAQIWDTAGQERY 75 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~ 75 (217)
+....+||+|+|..|||||||+++|.++.+...+.+|.+.++....+.++ +..+.+.||||+|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45567999999999999999999999999988888999988877766664 24688999999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCcc---C---CC
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD------------SNIVIMLVGNKADLRHLR---A---VS 137 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~ 137 (217)
..++..++++++++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987531 258999999999996542 2 35
Q ss_pred HHHHHHHHHHcCCc
Q 027856 138 TEDATAFAERENTF 151 (217)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (217)
.+++++++..+++.
T Consensus 177 ~e~a~~~A~~~g~l 190 (334)
T PLN00023 177 VDAARQWVEKQGLL 190 (334)
T ss_pred HHHHHHHHHHcCCC
Confidence 78899999987743
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=8.3e-26 Score=161.89 Aligned_cols=151 Identities=21% Similarity=0.348 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|++|+|||||+++|..+.+.. +.++.+.+.. .+.. ..+.+.+|||||++.+...+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877643 3455554432 2333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHH
Q 027856 95 VTRHVTFENVERWLKEL-RDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
++++.++.....++..+ ......+.|+++|+||+|+.+.. ...+...... ..+..++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99998877665555443 32222478999999999986532 2233322221 1234699999999999999999
Q ss_pred HHHH
Q 027856 169 EVLT 172 (217)
Q Consensus 169 ~i~~ 172 (217)
++.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9874
No 123
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=4.8e-28 Score=168.26 Aligned_cols=175 Identities=32% Similarity=0.567 Sum_probs=164.2
Q ss_pred CCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856 5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 5 ~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
+.+.+.+..++++|+|..++||||+|++++.+-|...+..+++.++....+.+.+..+.+.+||++|++++..+..++++
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 44566788999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
++.+.++||+.+++.||+....|++.+..... .+|.++|-||+|+.+...+...+.+..++.+...++-+|++...|+.
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM 170 (246)
T ss_pred cccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence 99999999999999999999999999987764 89999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027856 165 NAFTEVLTQIYRVVSR 180 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~ 180 (217)
.+|..+++.+.+...+
T Consensus 171 ~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 171 HVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887665
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1e-25 Score=165.35 Aligned_cols=156 Identities=17% Similarity=0.261 Sum_probs=121.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.+..+.. +.+|.+.. ...+.+.+ +.+.+||+||+..+...+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 345899999999999999999999887643 33444432 23333443 68899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH------------cCCcEEEEec
Q 027856 91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER------------ENTFFMETSA 157 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 157 (217)
+|+|++++.++.....++..+... ...+.|+++|+||.|+.. .++.+++.+.... ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999888877776666442 224789999999999864 4556666544321 1234999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027856 158 LESMNVENAFTEVLTQ 173 (217)
Q Consensus 158 ~~~~~i~~~~~~i~~~ 173 (217)
++|.|++++++||..+
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999864
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=1.1e-25 Score=163.71 Aligned_cols=157 Identities=28% Similarity=0.454 Sum_probs=125.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|..|||||||++++..+.... ..||.+.+ ...+.+.+ +.+.+||.+|+..++..|..++.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 678999999999999999999999776543 44666644 44455555 68899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH------cCCcEEEEecCCCCCH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER------ENTFFMETSALESMNV 163 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i 163 (217)
||+|.++...+.+....+..+... ...++|++|++||.|+.+ .+..+++...... ..+.++.+||.+|+|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 999999998888776655555442 235899999999999865 4566666655432 2344899999999999
Q ss_pred HHHHHHHHHHH
Q 027856 164 ENAFTEVLTQI 174 (217)
Q Consensus 164 ~~~~~~i~~~~ 174 (217)
.+.|+||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999764
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=2.2e-25 Score=162.87 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc-------CCCCCcc------cceeEeEEEEE--EE---CCeEEEEEEEeCCChhhhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE-------FSLESKS------TIGVEFATRSI--RC---DDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~l~Dt~G~~~~~ 76 (217)
+|+++|++++|||||+++|++.. +...+.+ +.+.+...... .+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999999742 1112212 12233333222 22 5667899999999999999
Q ss_pred hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC---cEE
Q 027856 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT---FFM 153 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 153 (217)
..+..++..+|++++|+|+++..+.+....|..... .++|+++|+||+|+.+.. ..+...+++...++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 999999999999999999998776666655544332 378999999999986422 12223445555555 389
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 027856 154 ETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 154 ~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
++||++|.|++++|+++.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998654
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=2.1e-25 Score=161.23 Aligned_cols=156 Identities=20% Similarity=0.232 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhhhhhc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR---------AITSAYYR 84 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~ 84 (217)
.+|+++|.+|+|||||+++|++..+.....+..+.+........ ..+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 47999999999999999999998765332222222233323322 34789999999963210 11111223
Q ss_pred CCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856 85 GAVGALLVYDVTRHVT--FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN 162 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
..|++++|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.+...+. +...+....+.+++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 4689999999998754 355566777776543 479999999999997643322 24455555567899999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQI 174 (217)
Q Consensus 163 i~~~~~~i~~~~ 174 (217)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=7.8e-25 Score=173.09 Aligned_cols=164 Identities=18% Similarity=0.098 Sum_probs=123.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhhhhhcC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITSAYYRG 85 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 85 (217)
...|+++|.||||||||+++|++........+.++.......+.+.+. ..+.+||+||..+ +...+...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 567999999999999999999987644333344455565666655322 4689999999532 22233345567
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856 86 AVGALLVYDVTRHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (217)
++++++|+|+++..+++.+..|..++..+.. .++|+++|+||+|+........++...++...+..++++||++++|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988888888899999877643 37899999999999764433333445555556678999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIYRV 177 (217)
Q Consensus 164 ~~~~~~i~~~~~~~ 177 (217)
+++|++|.+.+.+.
T Consensus 317 ~eL~~~L~~~l~~~ 330 (335)
T PRK12299 317 DELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999877653
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=1.4e-24 Score=154.98 Aligned_cols=151 Identities=23% Similarity=0.409 Sum_probs=119.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEEC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (217)
|+++|++|+|||||+++|.+..+...+.++.+.+... +...+ +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999999888887877766543 33333 7899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHH
Q 027856 96 TRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 96 ~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
++..++.....++..+... ...++|+++|+||.|+.+.. ...+..... ......++++|+++|.|++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9998888776666665432 22478999999999986532 222222221 112356899999999999999999
Q ss_pred HHH
Q 027856 170 VLT 172 (217)
Q Consensus 170 i~~ 172 (217)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=3.6e-25 Score=160.28 Aligned_cols=157 Identities=18% Similarity=0.123 Sum_probs=111.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh----hhhhhhhh---hhcCCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE----RYRAITSA---YYRGAV 87 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~---~~~~~d 87 (217)
+|+++|.+|+|||||+++|.+........+..+.......+.+.+. ..+.+|||||.. ....+... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999986543222122222333333333332 488999999953 21122222 245699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-cCCcEEEEecCCCCCH
Q 027856 88 GALLVYDVTRH-VTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAER-ENTFFMETSALESMNV 163 (217)
Q Consensus 88 ~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 163 (217)
++++|+|++++ .+++.+..|.+.+..... .++|+++|+||+|+...... .+....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 788888889888876542 36899999999998664332 3334445555 3678999999999999
Q ss_pred HHHHHHHHHH
Q 027856 164 ENAFTEVLTQ 173 (217)
Q Consensus 164 ~~~~~~i~~~ 173 (217)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=5.1e-24 Score=160.53 Aligned_cols=169 Identities=40% Similarity=0.597 Sum_probs=139.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.++|+++|++|+|||||+++|.++.+...+.++.+...........+..+++.+|||+|+++++.++..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999999988888777777776666578999999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHc---CCcEEEEe
Q 027856 93 YDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAERE---NTFFMETS 156 (217)
Q Consensus 93 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 156 (217)
+|..+ ..+.+....|...+........|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 4455556789999988776679999999999997653 22333333332222 33399999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHHhhh
Q 027856 157 AL--ESMNVENAFTEVLTQIYRVVSRK 181 (217)
Q Consensus 157 a~--~~~~i~~~~~~i~~~~~~~~~~~ 181 (217)
+. .+.++.++|..++..+.+.....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 99 99999999999999998765443
No 132
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=3.3e-24 Score=147.07 Aligned_cols=161 Identities=17% Similarity=0.341 Sum_probs=128.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..++|.++|..|+||||++++|.+... ....||.+.+. .++.+++ +.+++||..|+..+++.|.+||..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~I--ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQI--KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceee--EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 34579999999999999999999999884 44447777554 4443444 7999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCccCCCHHHH------HHHHHHcCCcEEEEecCCCCC
Q 027856 90 LLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKADLRHLRAVSTEDA------TAFAERENTFFMETSALESMN 162 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
|+|+|.+++..+++....+..+. ...-.+.|+++++||.|+.. ..+.+++ ++++.....+++-||+.+|++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 99999999988887755444443 22234789999999999973 2333333 344455678899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIYRV 177 (217)
Q Consensus 163 i~~~~~~i~~~~~~~ 177 (217)
+.+-++|+++.+.++
T Consensus 166 l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=2.6e-24 Score=153.37 Aligned_cols=158 Identities=39% Similarity=0.540 Sum_probs=127.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||++++++..+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++..++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999997777777888877777677777778899999999999988888889999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 93 YDVTRH-VTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 93 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||.+|.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998877 6666554 56666665554488999999999996633 22333333344445679999999999999999986
Q ss_pred H
Q 027856 171 L 171 (217)
Q Consensus 171 ~ 171 (217)
-
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=8.8e-25 Score=162.96 Aligned_cols=156 Identities=23% Similarity=0.194 Sum_probs=114.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER---------YRAITSA 81 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~ 81 (217)
...++|+++|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||... +.... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 44589999999999999999999998754433333334444444444443 3789999999621 22221 2
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM 161 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (217)
.+..+|++++|+|++++.+......|...+......+.|+++|+||+|+...... .......+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 3678999999999999888877777777776655457899999999998653221 13344556789999999999
Q ss_pred CHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQ 173 (217)
Q Consensus 162 ~i~~~~~~i~~~ 173 (217)
|+.++|++|.++
T Consensus 192 gi~~l~~~L~~~ 203 (204)
T cd01878 192 GLDELLEAIEEL 203 (204)
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=2e-24 Score=156.95 Aligned_cols=159 Identities=18% Similarity=0.288 Sum_probs=118.0
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
..+....++|+++|++|+|||||++++.+..+.. +.++.+.+.. .+...+ ..+.+||+||+..+...+..++..+
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENT 82 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCC
Confidence 3344558999999999999999999999986643 3455554432 333444 6889999999988888888899999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-----CcEEEEecCCC
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-----TFFMETSALES 160 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~ 160 (217)
|++++|+|+++..++.....++..+... ...++|+++++||+|+.+.. ..++..+...... ..++++||++|
T Consensus 83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCC
Confidence 9999999999988887776665555432 23479999999999986522 2232322221111 23789999999
Q ss_pred CCHHHHHHHHHH
Q 027856 161 MNVENAFTEVLT 172 (217)
Q Consensus 161 ~~i~~~~~~i~~ 172 (217)
.|++++|+||.+
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=3.2e-24 Score=154.26 Aligned_cols=152 Identities=19% Similarity=0.130 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc---CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+.|+++|.+|+|||||+++|++.. +...+.++.+.+.....+.+.. ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 468999999999999999999743 2222333344444444444442 358999999999988777777889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHH---cCCcEEEEecCCCCC
Q 027856 91 LVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAER---ENTFFMETSALESMN 162 (217)
Q Consensus 91 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 162 (217)
+|+|+++ +.+.+.+ ..+... ...|+++++||+|+..... ...++..+.... .+.+++++||++|.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3333222 222222 1348999999999965321 112334444444 357899999999999
Q ss_pred HHHHHHHHHH
Q 027856 163 VENAFTEVLT 172 (217)
Q Consensus 163 i~~~~~~i~~ 172 (217)
++++|+.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=2.3e-24 Score=151.68 Aligned_cols=134 Identities=23% Similarity=0.240 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh-----hhhhhhhhhhcCCcEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-----RYRAITSAYYRGAVGA 89 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~i 89 (217)
||+++|++|+|||||+++|.+..+. +.+|.+.+ +.. .+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 7999999999999999999988652 32333222 211 689999972 3333333 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVENAFT 168 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 168 (217)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....++..++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988654 2343321 249999999999865 33456667777777775 799999999999999999
Q ss_pred HHH
Q 027856 169 EVL 171 (217)
Q Consensus 169 ~i~ 171 (217)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.8e-23 Score=151.09 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
.|+++|.+|+|||||+++|.+..+......+.+.+.....+... +....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999988766544444443333334333 13568999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH-HHHHHHHH------HcCCcEEEEecCCCCCHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST-EDATAFAE------RENTFFMETSALESMNVENA 166 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~ 166 (217)
|+++....+... .+..+.. .+.|+++|+||+|+........ +....+.. ....+++++|+.+|.|+.++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998854322221 2222322 3789999999999864221111 11111111 12357999999999999999
Q ss_pred HHHHHHHHH
Q 027856 167 FTEVLTQIY 175 (217)
Q Consensus 167 ~~~i~~~~~ 175 (217)
|++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987643
No 139
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=6.7e-24 Score=149.15 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh------hhhhhhhhhhh--cC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ------ERYRAITSAYY--RG 85 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~~~~~~~~~--~~ 85 (217)
++|+++|.||+|||||+|+|++........+..+.+.....+.+.+ ..+.++|+||. ...+.....++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999987655556667777777777777 58899999992 11223333333 68
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 027856 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 165 (217)
.|++++|+|+++.+. --++..++.+. ++|+++++||+|....+.+.. +...+.+..+++++++||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r---~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLER---NLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHH---HHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHH---HHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999987532 12344444443 899999999999977554433 35667777899999999999999999
Q ss_pred HHHHH
Q 027856 166 AFTEV 170 (217)
Q Consensus 166 ~~~~i 170 (217)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98865
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=6e-23 Score=145.02 Aligned_cols=153 Identities=50% Similarity=0.774 Sum_probs=122.0
Q ss_pred EEcCCCCCHHHHHHHHhhCcC-CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC
Q 027856 18 LIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 18 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
++|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999887 44554555 6777777777777889999999999888888888999999999999999
Q ss_pred ChhhHHHHHHH-HHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHH-HHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 97 RHVTFENVERW-LKELRDHTDSNIVIMLVGNKADLRHLRAVSTED-ATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 97 ~~~s~~~~~~~-~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
++.+......| ...+......+.|+++++||+|+.......... ..........+++++|+..+.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99988888776 233333444689999999999997643332222 3344555678899999999999999999986
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=5e-24 Score=158.53 Aligned_cols=155 Identities=23% Similarity=0.240 Sum_probs=105.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC-----------hhhhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG-----------QERYRA 77 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~ 77 (217)
+....++|+++|.+|+|||||+++|.+..+.....++ .+.....+.+. .+.+||||| ++.++.
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence 3445689999999999999999999998765444443 33333333322 589999999 466666
Q ss_pred hhhhhhc----CCcEEEEEEECCChhhH-H---------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHH
Q 027856 78 ITSAYYR----GAVGALLVYDVTRHVTF-E---------NVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATA 143 (217)
Q Consensus 78 ~~~~~~~----~~d~ii~v~d~~~~~s~-~---------~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 143 (217)
.+..++. .++++++|+|.+....+ + .-..+...+.. .++|+++|+||+|+.+.. .+...+
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~ 152 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDE 152 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHH
Confidence 6555553 45788899988653221 0 00112222222 379999999999986532 234455
Q ss_pred HHHHcCC---------cEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 144 FAERENT---------FFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 144 ~~~~~~~---------~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
+....+. +++++||++| |++++|++|.+.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 5555553 4899999999 999999999987643
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=4.7e-23 Score=164.24 Aligned_cols=155 Identities=23% Similarity=0.179 Sum_probs=113.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------ERYRAITSA 81 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~ 81 (217)
...++|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|. +.+.+.+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 34589999999999999999999998754333344445555666666432 48899999996 2233322 3
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM 161 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (217)
.+.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+..... .... ......++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCC
Confidence 478999999999999998877776666666655445789999999999865221 1111 1223458999999999
Q ss_pred CHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQ 173 (217)
Q Consensus 162 ~i~~~~~~i~~~ 173 (217)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998754
No 143
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=5.2e-23 Score=162.66 Aligned_cols=160 Identities=19% Similarity=0.117 Sum_probs=116.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhhhhhcC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITSAYYRG 85 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 85 (217)
...|+++|.||||||||+++|++........+.++.......+.+++ ...+.+||+||..+ ........+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 57899999999999999999998764333223334555555555544 25789999999642 12222333567
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856 86 AVGALLVYDVTRH---VTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES 160 (217)
Q Consensus 86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
++++++|+|+++. .+++.+..|.+++..+.. ..+|+++|+||+|+..... ..+..+.+.+..+..++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 677778888888766532 4789999999999976422 223344555566778999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQI 174 (217)
Q Consensus 161 ~~i~~~~~~i~~~~ 174 (217)
+|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=5.3e-23 Score=147.07 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=110.3
Q ss_pred EEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh------hhhhhh--cCCcEE
Q 027856 18 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA------ITSAYY--RGAVGA 89 (217)
Q Consensus 18 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~i 89 (217)
++|.+|+|||||++++.+........++.+.+.....+.+++ ..+.+|||||...+.. ++..++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999875544445555555555666665 5789999999866543 344555 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
++|+|++++... ..+...+.. .++|+++|+||+|+.+...+.. +...+....+.+++++||.++.|+.+++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999886542 234444433 3789999999999976443333 345666777889999999999999999999
Q ss_pred HHHHH
Q 027856 170 VLTQI 174 (217)
Q Consensus 170 i~~~~ 174 (217)
+.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98753
No 145
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=5.1e-23 Score=159.50 Aligned_cols=153 Identities=20% Similarity=0.151 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhhhhhcCC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY--------RAITSAYYRGA 86 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~~ 86 (217)
+|+++|.+|+|||||+|+|++..+........++......+...+. .++.+|||||.... .......+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998865433222222222222322222 47899999995321 12234567899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVEN 165 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 165 (217)
|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+..... ..+....+....+. .++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999876654 344444443 3789999999999864221 12333344444444 699999999999999
Q ss_pred HHHHHHHHH
Q 027856 166 AFTEVLTQI 174 (217)
Q Consensus 166 ~~~~i~~~~ 174 (217)
+++++.+.+
T Consensus 155 L~~~l~~~l 163 (270)
T TIGR00436 155 LAAFIEVHL 163 (270)
T ss_pred HHHHHHHhC
Confidence 999998765
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=3.4e-23 Score=153.24 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CcCCCCC------------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR--NEFSLES------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT 79 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (217)
-+|+++|.+++|||||+++|+. +.+...+ ..+.+.+.......+....+.+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443332 1234444444444455556799999999999999999
Q ss_pred hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-CCHHHHHHHHH-------HcCCc
Q 027856 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-VSTEDATAFAE-------RENTF 151 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 151 (217)
..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.+.+. ...+++.++.. ..+.+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2222334444333 3789999999999965321 11233444432 23678
Q ss_pred EEEEecCCCCCHHH
Q 027856 152 FMETSALESMNVEN 165 (217)
Q Consensus 152 ~~~~Sa~~~~~i~~ 165 (217)
++++||++|.|+.+
T Consensus 159 iv~~Sa~~g~~~~~ 172 (194)
T cd01891 159 VLYASAKNGWASLN 172 (194)
T ss_pred EEEeehhccccccc
Confidence 99999999988744
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.3e-22 Score=168.34 Aligned_cols=183 Identities=21% Similarity=0.212 Sum_probs=124.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh-
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAIT- 79 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~- 79 (217)
..++|+++|.+|+|||||+++|++.... ....++.+.+.....+.+++. .+.+|||||. +.+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4699999999999999999999998753 233344455555555666664 5679999994 2333322
Q ss_pred hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHH-HHHHcCCcEEEEe
Q 027856 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATA-FAERENTFFMETS 156 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~S 156 (217)
..+++.+|++++|+|++++.+.+++. ++..+.. .++|+++|+||+|+.+.... ...+... +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 34578999999999999988877663 3444433 47899999999999652211 0111211 1222346799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhh---------hhccCCCCCCCCCCceeee
Q 027856 157 ALESMNVENAFTEVLTQIYRVVSRK---------ALEIGDDPAALPKGQTINV 200 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 200 (217)
|++|.|++++|+.+.+.+.....+- +..+...+|+..+|.++-+
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~ 416 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRI 416 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeE
Confidence 9999999999999998765444331 2223445666666665544
No 148
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.3e-23 Score=143.68 Aligned_cols=159 Identities=20% Similarity=0.337 Sum_probs=129.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|..++||||++++|..+++... .||.|.......+ . ++.+++||..|++.++.+|..|+.+.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y--k--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY--K--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE--c--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 45679999999999999999999998887666 5888877665555 3 58999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-----CCcEEEEecCCCCCH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERE-----NTFFMETSALESMNV 163 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i 163 (217)
|||+|.++++-+.+++..+..+..... ...|+++.+||.|+.. ..+..++.+..... ...+-.++|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999988887665555544433 6899999999999976 45555554444332 233777999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIY 175 (217)
Q Consensus 164 ~~~~~~i~~~~~ 175 (217)
.+.++|+...+.
T Consensus 167 ~egl~wl~~~~~ 178 (181)
T KOG0070|consen 167 YEGLDWLSNNLK 178 (181)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=6.7e-23 Score=149.11 Aligned_cols=155 Identities=23% Similarity=0.193 Sum_probs=106.7
Q ss_pred EEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh----hhh---hhhhhcCCcEEE
Q 027856 18 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY----RAI---TSAYYRGAVGAL 90 (217)
Q Consensus 18 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d~ii 90 (217)
++|++|||||||+++|.+........+..+.+.....+.+.+ ...+.+|||||.... ..+ ....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999875222212222333333344441 357899999996321 112 233567899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEec
Q 027856 91 LVYDVTRH------VTFENVERWLKELRDHTD-------SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSA 157 (217)
Q Consensus 91 ~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
+|+|++++ .+++....|...+..... .+.|+++|+||+|+..................+..++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 567777777777764432 37899999999999764332222222334445677999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027856 158 LESMNVENAFTEVLTQ 173 (217)
Q Consensus 158 ~~~~~i~~~~~~i~~~ 173 (217)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998754
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=2.4e-22 Score=143.38 Aligned_cols=146 Identities=22% Similarity=0.241 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhhhhhc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA--------ITSAYYR 84 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 84 (217)
++|+++|++|+|||||++++++..... ...+..+.......+...+ ..+.+|||||...+.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999887532 2223333333333444443 5789999999643321 2234667
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++||+++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998877665543332 247999999999998764332 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 027856 165 NAFTEVLTQI 174 (217)
Q Consensus 165 ~~~~~i~~~~ 174 (217)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 151
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=1.7e-22 Score=137.85 Aligned_cols=114 Identities=35% Similarity=0.599 Sum_probs=88.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCC--CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFS--LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
||+|+|++|||||||+++|++.... ..+..+.+.+..............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999876 23333444445555666677777799999999998888888889999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 027856 93 YDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~ivv~nK~D 129 (217)
||++++.|++.+..+ +..+.... .+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999987554 55555433 4699999999998
No 152
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=4.2e-22 Score=158.54 Aligned_cols=155 Identities=24% Similarity=0.345 Sum_probs=107.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhh-hhhh-------hhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQER-YRAI-------TSA 81 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~-------~~~ 81 (217)
...++|+++|.+|||||||+|+|++..+..... +..+.+.....+..++ .++.+|||||... +..+ ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345699999999999999999999988753221 1122233333444454 4789999999732 2111 123
Q ss_pred hhcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcEEEEecC
Q 027856 82 YYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFFMETSAL 158 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 158 (217)
.+..+|++++|+|..+. +... ..|+..+... +.|.++|+||+|+.+. ...++.+++...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 46799999999997653 3333 3355555443 5677899999998642 2455555655543 569999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027856 159 ESMNVENAFTEVLTQIY 175 (217)
Q Consensus 159 ~~~~i~~~~~~i~~~~~ 175 (217)
+|.|++++|++|.+.+.
T Consensus 200 tg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 200 SGKNIDGLLEYITSKAK 216 (339)
T ss_pred CccCHHHHHHHHHHhCC
Confidence 99999999999987654
No 153
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.8e-22 Score=148.09 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC----cCCCCC-----cccceeEeEEEEEE----------ECCeEEEEEEEeCCChhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN----EFSLES-----KSTIGVEFATRSIR----------CDDKIVKAQIWDTAGQER 74 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~l~Dt~G~~~ 74 (217)
++|+++|++|+|||||+++|+.. .+...+ ..|.........+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 111111 12222222223322 123357899999999876
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHH------
Q 027856 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAE------ 146 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~------ 146 (217)
+..........+|++++|+|+++..+....+.+. . ... .+.|+++++||+|+..... ...++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~-~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-I-GEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-H-HHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6544444567789999999998754443332222 1 122 2679999999999864221 11222222211
Q ss_pred -HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 147 -RENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 147 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
..+.+++++||++|.|++++++++.+.+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13567999999999999999999987664
No 154
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=5e-22 Score=146.06 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCccc----------------ceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKST----------------IGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
+|+++|.+|+|||||+++|++.........+ .+.......+.. ....+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 4899999999999999999998776543221 122222222222 3468999999999888888
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHHH---------
Q 027856 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAER--------- 147 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~--------- 147 (217)
+..++..+|++++|+|++++.+... ..++..+.. .+.|+++++||+|+...... ..+.+.+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8889999999999999988665433 233344433 47999999999999752211 12223333332
Q ss_pred -----cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 148 -----ENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 148 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
...+++++||++|.|+.++|+++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246699999999999999999998764
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=1e-21 Score=160.89 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=116.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA--------ITSA 81 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~ 81 (217)
...++|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||...+.. ....
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 356899999999999999999999976432 2234445566666666666 4679999999744322 2245
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM 161 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (217)
+++.+|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+... +...++...+.+++.+||++ .
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence 77899999999999998877654 6655543 37899999999998642 12344556677899999998 6
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQIYRVV 178 (217)
Q Consensus 162 ~i~~~~~~i~~~~~~~~ 178 (217)
|+.++|+.+.+.+.+..
T Consensus 347 gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 347 KIKALVDLLTQKINAFY 363 (442)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 156
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2e-21 Score=157.42 Aligned_cols=160 Identities=21% Similarity=0.175 Sum_probs=116.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----hhhhhh---hhhcC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----YRAITS---AYYRG 85 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~---~~~~~ 85 (217)
...|+++|.||||||||+++|++........+..+.......+.+.+ ...+.+||+||... ...+.. ..+..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 34899999999999999999998764433334444444444454442 25789999999532 112222 33556
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856 86 AVGALLVYDVTRH---VTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES 160 (217)
Q Consensus 86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
++++++|+|+++. .+++....|..++..+.. .++|++||+||+|+.. ..+.++.+....+.+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCC
Confidence 8999999999864 567777778888876543 3789999999999843 234455566666678999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQIYRV 177 (217)
Q Consensus 161 ~~i~~~~~~i~~~~~~~ 177 (217)
.|+++++++|.+.+.+.
T Consensus 313 eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 313 QGLDELLYAVAELLEET 329 (424)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999877654
No 157
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=8.8e-22 Score=166.46 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=116.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc-------CCCCCcc------cceeEeEEEE--EEE---CCeEEEEEEEeCCChhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKS------TIGVEFATRS--IRC---DDKIVKAQIWDTAGQER 74 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~l~Dt~G~~~ 74 (217)
.-+|+++|+.++|||||+++|+... +...+.. +.+.+..... +.+ ++..+.++||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998752 2222222 1244443332 322 46668999999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC---c
Q 027856 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT---F 151 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 151 (217)
|...+..++..+|++++|+|+++..+.+....|...+. .+.|+++|+||+|+.+.. ..+...++....+. .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999999777666666655443 378999999999986422 12223444444554 3
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q 027856 152 FMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 152 ~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
++++||++|.|+.++|++|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 899999999999999999987653
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=4.2e-22 Score=165.41 Aligned_cols=155 Identities=23% Similarity=0.225 Sum_probs=109.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE--------RYRAITSAY 82 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~ 82 (217)
..++|+|+|.+|||||||+|+|++..... ...+..+.+.......+.+ ..+.+|||||.+ .+...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 35799999999999999999999987543 2333333444444444455 468899999965 234455667
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856 83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
++.+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+.... .+..+.+....+ .++++||++|.|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~g 186 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRG 186 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCC
Confidence 899999999999998766543 344444443 379999999999986421 122222222222 367999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIYR 176 (217)
Q Consensus 163 i~~~~~~i~~~~~~ 176 (217)
++++|+++++.+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999988754
No 159
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=6.5e-22 Score=161.11 Aligned_cols=161 Identities=23% Similarity=0.181 Sum_probs=114.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh--hhhh------hhhhc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY--RAIT------SAYYR 84 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~------~~~~~ 84 (217)
.++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|..+. ...+ ...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 468999999999999999999998765444444555555555555543 26789999996321 1122 23468
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNV 163 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 163 (217)
.+|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+..... .... ....+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence 899999999999998877776555555554445799999999999864211 1111 1123444 589999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027856 164 ENAFTEVLTQIYRVVS 179 (217)
Q Consensus 164 ~~~~~~i~~~~~~~~~ 179 (217)
++++++|.+.+.....
T Consensus 351 deL~e~I~~~l~~~~~ 366 (426)
T PRK11058 351 PLLFQALTERLSGEVA 366 (426)
T ss_pred HHHHHHHHHHhhhccE
Confidence 9999999998865433
No 160
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=1.3e-21 Score=161.27 Aligned_cols=160 Identities=21% Similarity=0.198 Sum_probs=109.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-----------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI----------- 78 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 78 (217)
...++|+++|.+|+|||||+++|++..... ...+..+.+.....+..++ ..+.+|||||.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 456899999999999999999999876432 2223333333334444455 37899999996432211
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-H----cCCcEE
Q 027856 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-R----ENTFFM 153 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~ 153 (217)
....++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+ .....++...... . .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceE
Confidence 134678999999999999887766543 3333333 3789999999999972 1111222222222 2 247899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 027856 154 ETSALESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 154 ~~Sa~~~~~i~~~~~~i~~~~~~~ 177 (217)
++||++|.|+.++|+++.+.+...
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999876543
No 161
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=2.9e-22 Score=136.38 Aligned_cols=168 Identities=27% Similarity=0.501 Sum_probs=146.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|.++|++..|||||+-.+.++.+..++..+.|.++...++.+.+..+.+.+||..|++++........+.+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-----cCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-----RAVSTEDATAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (217)
++|++|++.+.++..+..|+.+.+......+|+ +|++|.|..-. .+.....+..+++..++..|.+|+..+.|+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 999999999999999999999999888767775 88999997321 111223356667778999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIYRV 177 (217)
Q Consensus 164 ~~~~~~i~~~~~~~ 177 (217)
..+|..++-++...
T Consensus 175 ~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 175 QKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999988777643
No 162
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.1e-21 Score=159.27 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=115.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----h---hhhhhhhhc
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----Y---RAITSAYYR 84 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~---~~~~~~~~~ 84 (217)
....|+|+|.||||||||+++|++........+..+.......+.+.+ ..+.+||+||... . .......+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 357899999999999999999998765443334445555555565555 5789999999421 1 111223457
Q ss_pred CCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcC-----------CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC
Q 027856 85 GAVGALLVYDVTRH----VTFENVERWLKELRDHTD-----------SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN 149 (217)
Q Consensus 85 ~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~-----------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (217)
.+|++++|+|+++. ..+..+..+..+|..+.. ..+|++||+||+|+.+.... .+.........+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g 314 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG 314 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence 89999999999753 344455555555544321 36899999999999653221 222333344457
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027856 150 TFFMETSALESMNVENAFTEVLTQIYRVVS 179 (217)
Q Consensus 150 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 179 (217)
.+++++||+++.|+++++.+|.+.+.+.+.
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 889999999999999999999988877654
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=4.5e-22 Score=141.97 Aligned_cols=146 Identities=21% Similarity=0.146 Sum_probs=100.4
Q ss_pred EEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhhhhhcCCc
Q 027856 17 VLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA--------ITSAYYRGAV 87 (217)
Q Consensus 17 ~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d 87 (217)
+++|.+|+|||||+++|++..... ...+..+.+........++ ..+.+|||||...+.. .+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999875321 1122223333333444444 6789999999765332 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 166 (217)
++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+...... .......+. .++++|+++|.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876544332 22233332 26899999999998653221 222334555 6899999999999999
Q ss_pred HHHHHHH
Q 027856 167 FTEVLTQ 173 (217)
Q Consensus 167 ~~~i~~~ 173 (217)
|+++++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 164
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.88 E-value=3.5e-22 Score=134.71 Aligned_cols=157 Identities=22% Similarity=0.379 Sum_probs=122.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+.+.++|..++|||||++....+.+.....+|.|... ..++...+.+.+||.+|+..+++.|+.|++.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 57899999999999999999998888777778877543 34455678999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHH-H----HHHcCCcEEEEecCCCCCHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATA-F----AERENTFFMETSALESMNVENA 166 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
+|+.+++.+...+.-+..+... .-.++|+++.+||.|+.+ ..+...+.. + .....+-+|.+|++...|++.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 9999998776665544444332 225899999999999865 222222211 1 1112345899999999999999
Q ss_pred HHHHHHHHH
Q 027856 167 FTEVLTQIY 175 (217)
Q Consensus 167 ~~~i~~~~~ 175 (217)
.+|++++.-
T Consensus 174 ~~Wli~hsk 182 (186)
T KOG0075|consen 174 LDWLIEHSK 182 (186)
T ss_pred HHHHHHHhh
Confidence 999997653
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=1.1e-21 Score=161.49 Aligned_cols=149 Identities=23% Similarity=0.221 Sum_probs=111.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA--------ITSAY 82 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~ 82 (217)
..++|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||.+.+.. ....+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999999987532 2334444555555666665 5789999999754322 12346
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856 83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
+..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+....... ...+..++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999887765444433 2478999999999996532211 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIYR 176 (217)
Q Consensus 163 i~~~~~~i~~~~~~ 176 (217)
++++++++.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987754
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=4.3e-21 Score=142.10 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=107.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAI 78 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~ 78 (217)
.....++|+++|.+|+|||||+++|++..+...+.++.+.+........ ...+.+|||||. +.+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4557799999999999999999999998654444455554443333332 257899999993 344444
Q ss_pred hhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHHHcCCcEE
Q 027856 79 TSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAERENTFFM 153 (217)
Q Consensus 79 ~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 153 (217)
...++.. ++++++++|.+++.+.... .+...+.. .+.|+++++||+|+....+. ..+++..........++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 4555554 4678888998876543321 12222222 37889999999998653221 12223334443467899
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 027856 154 ETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 154 ~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
++||+++.|++++++.|.+.+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999987654
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.8e-21 Score=139.23 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh-----hhhhhhhhhhhcCCcEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ-----ERYRAITSAYYRGAVGA 89 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----~~~~~~~~~~~~~~d~i 89 (217)
+|+++|.+|+|||||+++|.+... . ...+ ..+.+... .+|||||. +.+..+ ...+..+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence 799999999999999999886542 1 1112 12222222 26999996 222222 3347899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC--cEEEEecCCCCCHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT--FFMETSALESMNVENAF 167 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~ 167 (217)
++|+|+++..++. ..|+..+ ..+.|+++++||+|+.+ ...+.+.+++...++ +++++||++|.|++++|
T Consensus 69 l~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 69 IYVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 9999999887642 2333332 13678999999999854 235566677777764 79999999999999999
Q ss_pred HHHHHHHHHH
Q 027856 168 TEVLTQIYRV 177 (217)
Q Consensus 168 ~~i~~~~~~~ 177 (217)
+.+.+.+.+.
T Consensus 140 ~~l~~~~~~~ 149 (158)
T PRK15467 140 DYLASLTKQE 149 (158)
T ss_pred HHHHHhchhh
Confidence 9998776544
No 168
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.3e-21 Score=129.02 Aligned_cols=156 Identities=22% Similarity=0.408 Sum_probs=123.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|..++||||++..|..+.... ..+|.|......++ +++.+.+||..|++..+.+|..|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcc-cccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 36899999999999999999998776433 33677765544444 45899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHH-HHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-----CCcEEEEecCCCCCHHH
Q 027856 92 VYDVTRHVTFENVERWLK-ELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-----NTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~-~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 165 (217)
|+|..+..-.++++.-+. .+....-...+++|.+||.|+++ ..+..|+..+.... ...+.++++.+|.++.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 999988877776655333 33333335789999999999987 55777777665442 23478899999999999
Q ss_pred HHHHHHHHH
Q 027856 166 AFTEVLTQI 174 (217)
Q Consensus 166 ~~~~i~~~~ 174 (217)
-|.|+...+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999998754
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=2.1e-21 Score=144.44 Aligned_cols=159 Identities=23% Similarity=0.232 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCC---CCcc--cceeEeEEEEEE-----------------------EC--C----
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKS--TIGVEFATRSIR-----------------------CD--D---- 59 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~---~~~~--~~~~~~~~~~~~-----------------------~~--~---- 59 (217)
++|+++|+.|+|||||+.++.+..... .... +....+....+. +. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 579999999999999999997652211 1111 111111111110 00 1
Q ss_pred eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--C
Q 027856 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--S 137 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~ 137 (217)
....+.||||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1157899999999998888888888999999999998742111111222223222 13578999999998652211 1
Q ss_pred HHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 138 TEDATAFAER---ENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 138 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
.+++.+++.. .+.+++++||++|+|++++|++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1333333333 256799999999999999999998644
No 170
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=3.8e-21 Score=140.48 Aligned_cols=149 Identities=19% Similarity=0.259 Sum_probs=100.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAI 78 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~ 78 (217)
+....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++ .+.+|||||. +.+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346678999999999999999999999864444445555444444444443 6899999993 233444
Q ss_pred hhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHcC--Cc
Q 027856 79 TSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAEREN--TF 151 (217)
Q Consensus 79 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~ 151 (217)
...+++ .++++++|+|++++.+.... .++..+.. .+.|+++++||+|+..... ...++++..+...+ ..
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 444554 35899999999886554443 23333333 3789999999999864321 12344444455443 47
Q ss_pred EEEEecCCCCCHH
Q 027856 152 FMETSALESMNVE 164 (217)
Q Consensus 152 ~~~~Sa~~~~~i~ 164 (217)
+|++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999873
No 171
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=2.4e-21 Score=146.49 Aligned_cols=161 Identities=22% Similarity=0.159 Sum_probs=115.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ--------ERYRAITSAYY 83 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~ 83 (217)
..--|+++|.||+|||||+|+++|...+..+....++......+...+ ..++.|+||||. +.........+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 345689999999999999999999999887766666655555554444 579999999993 22334445567
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 027856 84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMN 162 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 162 (217)
..+|+++||+|+++..... -+..++.+.. ...|+++++||+|.................... ..++++||++|.|
T Consensus 84 ~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 84 KDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred ccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 8999999999998865432 1334444443 368999999999987644321222222222233 4599999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIYRV 177 (217)
Q Consensus 163 i~~~~~~i~~~~~~~ 177 (217)
++.+.+.+..++.+.
T Consensus 160 ~~~L~~~i~~~Lpeg 174 (298)
T COG1159 160 VDTLLEIIKEYLPEG 174 (298)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999888776543
No 172
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=7.7e-21 Score=160.10 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=111.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++++|||||+++|.+..+........+.+.....+.+++. ..+.||||||++.|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 5689999999999999999999998876655444444444444544432 278999999999999988888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-------C--CcEEEEecCCCCC
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-------N--TFFMETSALESMN 162 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~ 162 (217)
|+|+++....+..+.+ ..+ ...++|+++++||+|+... ..++....+... + .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~e~i-~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIEAI-SHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHHHH-HHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999875432222222 222 2237899999999998542 233333333222 2 4699999999999
Q ss_pred HHHHHHHHHH
Q 027856 163 VENAFTEVLT 172 (217)
Q Consensus 163 i~~~~~~i~~ 172 (217)
+.++|+++..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999874
No 173
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=8e-21 Score=153.14 Aligned_cols=163 Identities=20% Similarity=0.131 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhhhhhcC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITSAYYRG 85 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 85 (217)
...|+++|.||||||||+|+|++........+.++.......+.+.+. ..+.|+||||... ........+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 348999999999999999999987653333344444455555555432 3689999999532 11122235788
Q ss_pred CcEEEEEEECC---ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcEEEEecC
Q 027856 86 AVGALLVYDVT---RHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFFMETSAL 158 (217)
Q Consensus 86 ~d~ii~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 158 (217)
++++++|+|++ ....++....|+.++..+.. ...|+++|+||+|+....++ .+.+.++....+ ..++++||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999988 44566667778777766532 36899999999998653322 233344444433 368999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027856 159 ESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 159 ~~~~i~~~~~~i~~~~~~~ 177 (217)
++.|++++++.|.+.+.+.
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999999999887643
No 174
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=7.8e-21 Score=136.61 Aligned_cols=156 Identities=21% Similarity=0.151 Sum_probs=103.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhhhhhc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY--------RAITSAYYR 84 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 84 (217)
..+|+++|.+|+|||||+++|++...........+... .....+......+.+|||||.... .......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec-eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999876433322222211 111222333468899999995322 223345678
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-CCcEEEEecCCCCCH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNV 163 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 163 (217)
.+|++++|+|++++.+.. ...+...+... +.|+++|+||+|+........+....+.... ..+++++|++++.++
T Consensus 82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGEG-DEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCch-HHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 899999999999873211 12333334332 6899999999998742222233333444444 367999999999999
Q ss_pred HHHHHHHHHH
Q 027856 164 ENAFTEVLTQ 173 (217)
Q Consensus 164 ~~~~~~i~~~ 173 (217)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 175
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=7.6e-21 Score=149.18 Aligned_cols=158 Identities=21% Similarity=0.197 Sum_probs=105.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhhhhhc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------YRAITSAYYR 84 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 84 (217)
.-.|+++|.+|||||||+|+|++...........++......+... ...++.+|||||... +.......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3569999999999999999999988755443332222222222222 236899999999532 1233344678
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNV 163 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 163 (217)
.+|++++|+|+++..+.. ....+..+.. .+.|+++|+||+|+.............+....+ ..++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~~-~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGPG-DEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCChh-HHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 999999999998843211 1233333332 368999999999997422222333444444444 56999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIY 175 (217)
Q Consensus 164 ~~~~~~i~~~~~ 175 (217)
+++++++.+.+.
T Consensus 160 ~~L~~~L~~~l~ 171 (292)
T PRK00089 160 DELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHhCC
Confidence 999999987764
No 176
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=2.1e-20 Score=135.34 Aligned_cols=155 Identities=22% Similarity=0.211 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh----------h-hhhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY----------R-AITS 80 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~-~~~~ 80 (217)
.++|+++|.+|+|||||+++|++..... ...+..+.......+..++ ..+.+|||||.... . ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999999876432 2222222333333444454 35789999995322 1 1123
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-HHc----CCcEEEE
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-ERE----NTFFMET 155 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 155 (217)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+......+...+.. ... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 356789999999999988765443 23333322 36899999999998764322222222222 222 3679999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 027856 156 SALESMNVENAFTEVLTQ 173 (217)
Q Consensus 156 Sa~~~~~i~~~~~~i~~~ 173 (217)
||+++.|+.++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988753
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=1.3e-20 Score=159.35 Aligned_cols=154 Identities=21% Similarity=0.183 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc---CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+.|+++|++++|||||+++|++.. +......+.+.+.....+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999743 3334445556665555555555 78999999999999988888899999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC--CHHHHHHHHHHc----CCcEEEEecCCC
Q 027856 91 LVYDVTR---HVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV--STEDATAFAERE----NTFFMETSALES 160 (217)
Q Consensus 91 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 160 (217)
+|+|+++ +.+.+.+. .+.. .++| +++|+||+|+.+...+ ..+++.++.... +.+++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 44443332 2222 2667 9999999999764322 123444555443 467999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQIYR 176 (217)
Q Consensus 161 ~~i~~~~~~i~~~~~~ 176 (217)
.|+++++..+...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999988766543
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=2.4e-20 Score=159.47 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=113.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccce--eEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
...+.|+|+|+.++|||||+++|.+..+........+ ...+...+..++....+.||||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4568999999999999999999998877554333222 22333334444556799999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH-------HHHcC--CcEEEEecCC
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF-------AEREN--TFFMETSALE 159 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~ 159 (217)
+++|+|+++....+..+.+ ..+. ..++|+++++||+|+.... .++..+. ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999885433322222 1222 2478999999999986522 2222222 12233 6799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~ 174 (217)
|.|++++|+++....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998753
No 179
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.86 E-value=1.2e-20 Score=138.80 Aligned_cols=160 Identities=22% Similarity=0.257 Sum_probs=108.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC------------------cccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES------------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
..++|+++|+.++|||||+++|+........ ....+.......+........++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3589999999999999999999975421110 0112222223333212444799999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-CCHHHHH-HHHHHc---
Q 027856 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-VSTEDAT-AFAERE--- 148 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~--- 148 (217)
.|.......+..+|++|+|+|+.+...... ...+..+... +.|+++|+||+|+...+. ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 998888888999999999999987654333 3333444443 788999999999873211 0112222 232332
Q ss_pred ---CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 149 ---NTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 149 ---~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
.++++++||.+|.|+.++++.+.+.+.
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 256999999999999999999987653
No 180
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.86 E-value=4.1e-20 Score=125.63 Aligned_cols=167 Identities=26% Similarity=0.355 Sum_probs=136.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC--CCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhh-hhhhhhhhcCCc
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL--ESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERY-RAITSAYYRGAV 87 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d 87 (217)
...+|+|+|..++|||+++..|+-.+... .+.+|++. .+...+.. .+-.-.+.|+||.|...+ ..+-.+|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 45799999999999999999988665443 45556543 33333333 444558899999997766 567788999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++++|||..+++||+.++.+-..+....+ ..+|+++.+||.|+.+..++..+.+..|+....+..+++++.+...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999998777777766554 56899999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027856 167 FTEVLTQIYRVVS 179 (217)
Q Consensus 167 ~~~i~~~~~~~~~ 179 (217)
|..+...+.+-.+
T Consensus 167 f~~l~~rl~~pqs 179 (198)
T KOG3883|consen 167 FTYLASRLHQPQS 179 (198)
T ss_pred HHHHHHhccCCcc
Confidence 9999887764433
No 181
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=3.4e-20 Score=147.65 Aligned_cols=184 Identities=22% Similarity=0.244 Sum_probs=128.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh---------h--hhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR---------A--ITS 80 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~--~~~ 80 (217)
..++|+++|.|++|||||+|+|++..-...+ +..|++.......+....-.+.++||+|..+-. + ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 5799999999999999999999998866544 444555555555554333588999999943211 1 123
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEE
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMET 155 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 155 (217)
..+..+|++++|+|++.+.+-++.. ....+.. .+.+++||+||||+.+.+....++.+..... ..++.+.+
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 3567899999999999987755432 2223322 3889999999999987544445544433333 24679999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhhh----------hhccCCCCCCCCCCceeeec
Q 027856 156 SALESMNVENAFTEVLTQIYRVVSRK----------ALEIGDDPAALPKGQTINVG 201 (217)
Q Consensus 156 Sa~~~~~i~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 201 (217)
||++|.+++.+|+.+.... +....+ +..+...||+..+|.++-+.
T Consensus 332 SA~~~~~i~~l~~~i~~~~-~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~ 386 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIY-ECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIK 386 (444)
T ss_pred EecCCCChHHHHHHHHHHH-HHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEE
Confidence 9999999999999988544 333332 34445557777777776553
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=3.8e-20 Score=152.82 Aligned_cols=159 Identities=23% Similarity=0.216 Sum_probs=107.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----------hhh-h
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----------YRA-I 78 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~-~ 78 (217)
...++|+++|.+|+|||||+++|++..... ...+..+.+.....+..++ ..+.+|||||... +.. .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 357999999999999999999999876432 2223333333333444444 4678999999432 111 1
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-H----HcCCcEE
Q 027856 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-E----RENTFFM 153 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~~~ 153 (217)
...++..+|++++|+|++++.+..+.. +...+.. .+.|+++|+||+|+.+... .++..... . ...++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence 234678999999999999887765543 3333333 3789999999999874221 12222111 1 1357899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 027856 154 ETSALESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 154 ~~Sa~~~~~i~~~~~~i~~~~~~~ 177 (217)
++||++|.|++++|+.+.+...+.
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998765543
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=2.4e-20 Score=153.80 Aligned_cols=151 Identities=23% Similarity=0.207 Sum_probs=108.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCC-CcccceeEeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhhhhhcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ--------ERYRAITSAYYRG 85 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~ 85 (217)
+|+++|.+|+|||||+|+|++...... ..+..+.+.....+.+++ ..+.+|||||. +.+......++..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999999875332 223333444444555555 47899999995 4455566778899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 027856 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 164 (217)
+|++++|+|+.++.+..+ ..+...+.. .++|+++|+||+|+...... ..+ +...++ .++++||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999999987654433 223333333 27899999999998653321 122 345565 69999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYR 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
++++.+.+.+.+
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999877643
No 184
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=5.6e-20 Score=155.71 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=113.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCc--CC-----CCC------cccceeEeEEE--EEEE---CCeEEEEEEEeCCCh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FS-----LES------KSTIGVEFATR--SIRC---DDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~-----~~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~ 72 (217)
+...+|+++|+.++|||||+.+|+... +. ..+ ..+.+++.... .+.+ ++..+.++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456699999999999999999998632 11 111 01123333222 2222 455789999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-
Q 027856 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF- 151 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 151 (217)
..+...+..++..+|++++|+|+++....+....|..... .+.|+++|+||+|+.... ......++....++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence 9999889999999999999999998766555555554332 378999999999986422 112223344444543
Q ss_pred --EEEEecCCCCCHHHHHHHHHHHHH
Q 027856 152 --FMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 152 --~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
++++||++|.|+.+++++|.+.+.
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 899999999999999999987764
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=6.1e-20 Score=151.64 Aligned_cols=148 Identities=23% Similarity=0.173 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhhhhhc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------YRAITSAYYR 84 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 84 (217)
++|+++|.+|+|||||+++|++..... ...+..+.+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999887532 2223334444455555555 6899999999765 3334456788
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNV 163 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 163 (217)
.+|++++|+|+.++.+..+. .....+... +.|+++|+||+|+.+. .....++ ...++. ++++||.+|.|+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~-~~~~~l~~~---~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv 150 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE-EIAKILRKS---NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGI 150 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCH
Confidence 99999999999886544321 122222222 7899999999997541 1222222 345554 899999999999
Q ss_pred HHHHHHHHH
Q 027856 164 ENAFTEVLT 172 (217)
Q Consensus 164 ~~~~~~i~~ 172 (217)
.++|+.++.
T Consensus 151 ~~l~~~I~~ 159 (435)
T PRK00093 151 GDLLDAILE 159 (435)
T ss_pred HHHHHHHHh
Confidence 999999987
No 186
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=7.5e-20 Score=157.70 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=111.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....+.|+++|+.++|||||+++|.+..+........+.+.....+.+++ ..++||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 34678999999999999999999998777554433333333333444444 5789999999999999998889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHH-------HHHHcC--CcEEEEecCCC
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATA-------FAEREN--TFFMETSALES 160 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~ 160 (217)
|+|||+++....+..+.| ......++|+++++||+|+.+.. .+.... +...++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 999999885332222222 22222478999999999996421 222211 122233 67999999999
Q ss_pred CCHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQ 173 (217)
Q Consensus 161 ~~i~~~~~~i~~~ 173 (217)
.|++++|++|...
T Consensus 438 ~GI~eLle~I~~~ 450 (787)
T PRK05306 438 EGIDELLEAILLQ 450 (787)
T ss_pred CCchHHHHhhhhh
Confidence 9999999998853
No 187
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=3.4e-20 Score=156.92 Aligned_cols=146 Identities=20% Similarity=0.185 Sum_probs=109.0
Q ss_pred cCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh------hhhhh--cCCcEEEE
Q 027856 20 GDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI------TSAYY--RGAVGALL 91 (217)
Q Consensus 20 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~ii~ 91 (217)
|++|+|||||+|+|++........+..+.+.....+.+++ ..+.+|||||..++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999876555556666666666666665 46799999998765432 23333 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
|+|+++.+.. ..+..++.+ .+.|+++|+||+|+.+.+.+. .+.+.+.+..+++++++||++|.|++++++.+.
T Consensus 79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875321 222233322 479999999999997644443 346777888899999999999999999999998
Q ss_pred HHH
Q 027856 172 TQI 174 (217)
Q Consensus 172 ~~~ 174 (217)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 188
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.5e-21 Score=134.81 Aligned_cols=179 Identities=32% Similarity=0.538 Sum_probs=152.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++++++|..|.||||++++++-+.|...+.+|.+..........+...+.+..|||.|++.+..+...++-+..+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46899999999999999999999999999999999999998888877766799999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+++|+..+.++.++..|...+...+. ++|+++++||.|..+.. .......+.+..++.|+++||+.+-|++.-|-|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 99999999999999999999988775 69999999999986632 2233445566778889999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCCC
Q 027856 171 LTQIYRVVSRKALEIGDDPAALPKG 195 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (217)
.+.+...-+ ++..+.|+.+|+-
T Consensus 165 arKl~G~p~---Lefva~paLaPpe 186 (216)
T KOG0096|consen 165 ARKLTGDPS---LEFVAMPALAPPE 186 (216)
T ss_pred hhhhcCCCC---eEEEeccccCCCe
Confidence 998876544 3444444455554
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=2.8e-19 Score=155.04 Aligned_cols=157 Identities=20% Similarity=0.218 Sum_probs=110.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChh----------hhhhh-h
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE----------RYRAI-T 79 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~-~ 79 (217)
..++|+++|.+|+|||||+++|++..... ...+..+.+.....+.+++. .+.+|||||.. .+..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 45899999999999999999999987532 22233445554555556664 56799999942 12221 2
Q ss_pred hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-H----cCCcEEE
Q 027856 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-R----ENTFFME 154 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 154 (217)
...++.+|++++|+|+++..+.+... ++..+.. .++|+++|+||+|+.+... .+..+.... . ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 34578999999999999988777654 3333333 3789999999999965221 222222222 1 2356799
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q 027856 155 TSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 155 ~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
+||++|.|++++|+.+.+.+.+
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987765
No 190
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=2.9e-20 Score=148.06 Aligned_cols=151 Identities=23% Similarity=0.168 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhhhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQER---------YRAITSAYY 83 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 83 (217)
..|+++|.||+|||||+|||++....... .+..+.+.......+.+ ..+.++||+|.+. ........+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999999887644 23334444444444444 5699999999442 234456678
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 027856 84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMN 162 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 162 (217)
..+|++|||+|....-+..+ +.....++. .++|+++|+||+|... .++.....-.+| ..++.+||..|.|
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr~---~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILRR---SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccC
Confidence 89999999999988665443 233333442 3799999999999642 233333333445 4599999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 i~~~~~~i~~~~~ 175 (217)
+.++++.++..+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999998873
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=1e-19 Score=157.73 Aligned_cols=157 Identities=23% Similarity=0.184 Sum_probs=107.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------YRAITSA 81 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~ 81 (217)
.....+|+++|.+|+|||||+|+|++....... .+.|.+..............+.+|||||.+. +......
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 344688999999999999999999987653322 2333433333333322235789999999642 3344556
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCC
Q 027856 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALES 160 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 160 (217)
++..+|++++|+|+++..+..+ ..|...+.. .++|+++|+||+|+.... .....+. ..+. ..+++||++|
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g 421 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHG 421 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCC
Confidence 7899999999999987533221 245555543 389999999999985421 1222222 2232 3679999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQIYR 176 (217)
Q Consensus 161 ~~i~~~~~~i~~~~~~ 176 (217)
.|+.++|+++++.+..
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999987754
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=5.5e-20 Score=131.03 Aligned_cols=151 Identities=19% Similarity=0.161 Sum_probs=103.5
Q ss_pred EEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhhcCCcEE
Q 027856 18 LIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYYRGAVGA 89 (217)
Q Consensus 18 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~i 89 (217)
++|++|+|||||++++++.... .......+............ ...+.+||+||..... .....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987655 22223333333333333222 3588999999965443 2344578899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH---HHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE---DATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++|+|+++..+..... +...... .+.|+++|+||+|+......... .........+.+++++|+.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999887665543 3333332 48899999999998764322211 112223335678999999999999999
Q ss_pred HHHHHHH
Q 027856 167 FTEVLTQ 173 (217)
Q Consensus 167 ~~~i~~~ 173 (217)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999864
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=2.9e-19 Score=135.38 Aligned_cols=151 Identities=25% Similarity=0.256 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhhcCCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYYRGAV 87 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 87 (217)
+|+++|.+|+|||||+++|++........+..+.+.....+.+++ ..+++||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764333223344445555555655 588999999964322 23345789999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------Hhh-----------
Q 027856 88 GALLVYDVTRHV-TFENVERWLKEL-----------------------------------------RDH----------- 114 (217)
Q Consensus 88 ~ii~v~d~~~~~-s~~~~~~~~~~l-----------------------------------------~~~----------- 114 (217)
++++|+|++++. ..+.+...++.+ .++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 232222222111 000
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 115 -----------T--DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 115 -----------~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
. ...+|+++|+||+|+.. .++...++.. ..++++||++|.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 12468999999999854 4444444443 3589999999999999999998754
No 194
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=2.4e-19 Score=155.15 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=111.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh----------hhhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI----------TSAY 82 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~ 82 (217)
.++|+++|++|+|||||+|+|++........ .+.+.......+......+.+|||||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4789999999999999999999886543333 344444444444445578999999997654321 2223
Q ss_pred h--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856 83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES 160 (217)
Q Consensus 83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
+ ..+|++++|+|+++.+.. ..+..++.+. +.|+++++||+|+.+.+.+ ..+.+++.+..+++++++|+.+|
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 478999999999886432 2344444443 7999999999998754444 34567777888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQI 174 (217)
Q Consensus 161 ~~i~~~~~~i~~~~ 174 (217)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999887654
No 195
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.1e-20 Score=128.83 Aligned_cols=160 Identities=22% Similarity=0.363 Sum_probs=122.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcC-------CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEF-------SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
..+.|+++|..++|||||+.++-..-. .....+|.+..... +.+. ...+.+||..|++..+++|..+|.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~--i~v~--~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT--IEVC--NAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc--eeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence 457899999999999999987554211 12334455544333 3334 458899999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH------HcCCcEEEEec
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKEL-RDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE------RENTFFMETSA 157 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa 157 (217)
.+|++|+++|+.+++-++....-++.+ ....-.+.|+++.+||.|+.+ ....+++..... +...++.++||
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 999999999999998888776544444 333346899999999999976 444555544443 23466999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 027856 158 LESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 158 ~~~~~i~~~~~~i~~~~~~~ 177 (217)
.+|+|+.+-..|++..+..+
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999988866
No 196
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.83 E-value=3.9e-22 Score=139.74 Aligned_cols=191 Identities=36% Similarity=0.591 Sum_probs=156.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe-EEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK-IVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.++.+++.|+|.-|+|||+++.+++...++..|..|++.++.....+.++. .+.++|||..|++++..+...+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 578999999999999999999999999999999999998888887777554 4688999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHcCCc-EEEEecCCCCC
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHT----DSNIVIMLVGNKADLRHLRAV-STEDATAFAERENTF-FMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 162 (217)
.++|||+++..+++.+..|...+.... +...|+++..||+|....-.. .......+.+++|+. ++++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 999999999999999999999987644 245778999999998653222 235567788888876 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCcc
Q 027856 163 VENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDV 206 (217)
Q Consensus 163 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (217)
+.+.-..+++.+.....+ ..+.....++-++++..+-.
T Consensus 182 i~Ea~r~lVe~~lvnd~q------~~~s~~~~~~~~~l~~~~~s 219 (229)
T KOG4423|consen 182 IPEAQRELVEKILVNDEQ------PIKSSAVDGDKINLRLMQPS 219 (229)
T ss_pred hhHHHHHHHHHHHhhccC------CcccccccccccCccccCcc
Confidence 999999998887755432 22334556666666666633
No 197
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.8e-18 Score=121.71 Aligned_cols=156 Identities=26% Similarity=0.405 Sum_probs=120.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC--------CCcc--cceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL--------ESKS--TIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSA 81 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 81 (217)
...+|+|.|+.++||||+++++....... .+.. ..+.........+++. ..+.|++||||+++...|..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHHHHH
Confidence 46899999999999999999999876411 1111 1222222222333332 58899999999999999999
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc--CCcEEEEecCC
Q 027856 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE--NTFFMETSALE 159 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~ 159 (217)
+.+++.++++++|.+.+..+ +....+..+.... .+|++|++||.|+.+ ..+.+...++.... ..+.|+.+|..
T Consensus 88 l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~e 162 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDATE 162 (187)
T ss_pred HhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeeccc
Confidence 99999999999999999888 5556666665553 399999999999987 45667676666654 78899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQ 173 (217)
Q Consensus 160 ~~~i~~~~~~i~~~ 173 (217)
+++..+.++.++..
T Consensus 163 ~~~~~~~L~~ll~~ 176 (187)
T COG2229 163 GEGARDQLDVLLLK 176 (187)
T ss_pred chhHHHHHHHHHhh
Confidence 99999999888765
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=6.5e-19 Score=148.32 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc----cceeEeEEEEEE------------ECCeEEEEEEEeCCChhhhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIGVEFATRSIR------------CDDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~l~Dt~G~~~~~ 76 (217)
..-|+++|++++|||||+++|.+..+...... +.+......... ++.....+.||||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 35699999999999999999999876543222 222222111110 00111248899999999999
Q ss_pred hhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC----CCH--------HH-
Q 027856 77 AITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA----VST--------ED- 140 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----~~~--------~~- 140 (217)
.++..++..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+..... ... ..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999987 44443332 2222 3789999999999863100 000 00
Q ss_pred -----------HHHHHH------------Hc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 141 -----------ATAFAE------------RE--NTFFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 141 -----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
..++.. .+ ..+++++||++|+|+++++.++......
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 001111 11 3579999999999999999988765444
No 199
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.82 E-value=5.4e-19 Score=131.42 Aligned_cols=117 Identities=22% Similarity=0.357 Sum_probs=86.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC-cEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA-VGALLVY 93 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~ii~v~ 93 (217)
+|+++|++|||||||+++|....+...+.++ ............+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998776555332 2222222221123456899999999999998888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHh---hcCCCCcEEEEEeCCCCCC
Q 027856 94 DVTRH-VTFENVERWLKELRD---HTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 94 d~~~~-~s~~~~~~~~~~l~~---~~~~~~p~ivv~nK~D~~~ 132 (217)
|+++. .++..+..|+..+.. ....+.|+++++||.|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 666666555444322 1225899999999999864
No 200
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=2.2e-18 Score=127.02 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=99.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCC--------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
.++|+++|+.++|||||+++|+...... ......+++.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4799999999999999999998641100 00112334444444445555568899999999888877
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHc-----C
Q 027856 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAERE-----N 149 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 149 (217)
....+..+|++++|+|+......+. ...+..+... +.| +++++||+|+....+. ..+++.++.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7778889999999999987543322 2333334332 566 7789999998642221 112344444443 3
Q ss_pred CcEEEEecCCCCCHH
Q 027856 150 TFFMETSALESMNVE 164 (217)
Q Consensus 150 ~~~~~~Sa~~~~~i~ 164 (217)
++++++||.+|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999999863
No 201
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=3.4e-19 Score=133.12 Aligned_cols=149 Identities=24% Similarity=0.199 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCC-----------------------------cccceeEeEEEEEEECCeEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------------------KSTIGVEFATRSIRCDDKIVKAQ 65 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (217)
||+++|++|+|||||+++|+...-.... ....+++.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999864321110 00022223333333333345889
Q ss_pred EEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC----CHHHH
Q 027856 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV----STEDA 141 (217)
Q Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~ 141 (217)
+|||||++.+.......+..+|++++|+|++++..-.. ......+... ...++++|+||+|+.+.... ...++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 99999998887666677899999999999987643222 1222222222 12457789999998642211 12234
Q ss_pred HHHHHHcC---CcEEEEecCCCCCHHHH
Q 027856 142 TAFAEREN---TFFMETSALESMNVENA 166 (217)
Q Consensus 142 ~~~~~~~~---~~~~~~Sa~~~~~i~~~ 166 (217)
..+....+ .+++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 44455555 34899999999998753
No 202
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1.4e-18 Score=125.15 Aligned_cols=152 Identities=19% Similarity=0.235 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhhhhhhc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAITSAYYR 84 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~~ 84 (217)
.|+++|.+|+|||||++.+++........++.+.+.....+..++ .+.+|||||. +.+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997665555555555555444444444 8899999993 223334444443
Q ss_pred ---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHH--HcCCcEEEEec
Q 027856 85 ---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAE--RENTFFMETSA 157 (217)
Q Consensus 85 ---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~Sa 157 (217)
..+++++++|.....+.... .....+... +.|+++++||+|+...... .......... ....+++++|+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL-EMLDWLEEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH-HHHHHHHHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 45788999998766432221 122223222 5899999999998542211 1122222222 33467999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027856 158 LESMNVENAFTEVLTQ 173 (217)
Q Consensus 158 ~~~~~i~~~~~~i~~~ 173 (217)
+++.++.+++++|.+.
T Consensus 154 ~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 154 LKGQGIDELRALIEKW 169 (170)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999865
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=7e-19 Score=144.67 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=104.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCC---------------------------CcccceeEeEEEEEEECCe
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLE---------------------------SKSTIGVEFATRSIRCDDK 60 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (217)
....++|+++|+.++|||||+.+|+.. ..... .....+.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 345699999999999999999999862 11100 0011233333444445555
Q ss_pred EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCcEEEEEeCCCCCCccC---
Q 027856 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV--ERWLKELRDHTDSNIVIMLVGNKADLRHLRA--- 135 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--- 135 (217)
.+.+.||||||++.|.......+..+|++++|+|+++..+.... ...+... ... ...++++++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~-~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTL-GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHc-CCCeEEEEEEChhccCccHHHH
Confidence 57999999999998877777778899999999999987432111 1111122 222 1357899999999964221
Q ss_pred -CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 027856 136 -VSTEDATAFAEREN-----TFFMETSALESMNVENAFT 168 (217)
Q Consensus 136 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 168 (217)
...+++.+++...+ .+++++||++|.|+.+.+.
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 11344555665554 5699999999999987543
No 204
>COG2262 HflX GTPases [General function prediction only]
Probab=99.81 E-value=2e-18 Score=135.73 Aligned_cols=172 Identities=23% Similarity=0.188 Sum_probs=130.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------ERYRAIT 79 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~ 79 (217)
.....+.|+++|.+|+|||||+|+|++.........+.+.+.....+...+. ..+.+.||.|. +.|.+..
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHH
Confidence 3456789999999999999999999988776666667777777777777653 47899999993 2344433
Q ss_pred hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
+ -...+|+++.|+|++++...+.++.....+.+.....+|+++|.||+|+..... .........-..+.+||++
T Consensus 267 E-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~ 340 (411)
T COG2262 267 E-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKT 340 (411)
T ss_pred H-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEecc
Confidence 3 346799999999999998877777777777777666899999999999765322 1111222111699999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhccCC
Q 027856 160 SMNVENAFTEVLTQIYRVVSRKALEIGD 187 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~ 187 (217)
|.|++.+.+.|...+..........++.
T Consensus 341 ~~gl~~L~~~i~~~l~~~~~~~~l~lp~ 368 (411)
T COG2262 341 GEGLDLLRERIIELLSGLRTEVTLELPY 368 (411)
T ss_pred CcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence 9999999999999988777666555543
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=3.2e-18 Score=144.58 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=113.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhh--CcCCCCC------------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTR--NEFSLES------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA 77 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 77 (217)
...+|+++|+.++|||||+++|+. +.+.... ..+.+++.......+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 357899999999999999999997 3332211 22455666666666666668999999999999999
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-CCHHHHHHHHHH-------cC
Q 027856 78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-VSTEDATAFAER-------EN 149 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~ 149 (217)
.+..+++.+|++++|+|+.+....+. ..++..+.. .+.|.++++||+|....+. ...+++...... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 99999999999999999987643332 223333333 3788999999999864321 112333333321 34
Q ss_pred CcEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027856 150 TFFMETSALESM----------NVENAFTEVLTQIY 175 (217)
Q Consensus 150 ~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 175 (217)
++++.+||.+|. ++..+|+.|++.+.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 679999999998 47777777666554
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.80 E-value=1.1e-18 Score=147.39 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC--cCCCCC------------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN--EFSLES------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT 79 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (217)
-+|+++|+.++|||||+++|+.. .+.... ....+++.......+....+.+.+|||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999863 221111 1122344444433344445799999999999999888
Q ss_pred hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-CCHHHHHHHHH-------HcCCc
Q 027856 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-VSTEDATAFAE-------RENTF 151 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 151 (217)
..++..+|++++|+|+.+... .....|+..+... ++|+++|+||+|+.+.+. ...+++..++. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999987432 2234455555443 789999999999865321 11233333332 23567
Q ss_pred EEEEecCCCC----------CHHHHHHHHHHHHH
Q 027856 152 FMETSALESM----------NVENAFTEVLTQIY 175 (217)
Q Consensus 152 ~~~~Sa~~~~----------~i~~~~~~i~~~~~ 175 (217)
++++||++|. |+..+|+.|++.+.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 9999999996 78888888887654
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.80 E-value=5.7e-19 Score=145.18 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=102.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-----------------------------CcccceeEeEEEEEEECCeE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------------------------SKSTIGVEFATRSIRCDDKI 61 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|++++|||||+++|+...-... .....|++.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4569999999999999999999985321100 00123444444444555556
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC----
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH--VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA---- 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~---- 135 (217)
+.+.||||||++.|.......+..+|++++|+|++++ ..... ...+..+... ...|+++++||+|+.+...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~-~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT-REHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcch-HHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 7999999999988876665667899999999999873 21111 1222222222 1246899999999965221
Q ss_pred CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 027856 136 VSTEDATAFAEREN-----TFFMETSALESMNVENAFT 168 (217)
Q Consensus 136 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 168 (217)
...+++.+++...+ .+++++||++|.|+.+.++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234445554444 4699999999999987553
No 208
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=2.6e-18 Score=129.87 Aligned_cols=166 Identities=20% Similarity=0.185 Sum_probs=114.9
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh------------
Q 027856 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE------------ 73 (217)
Q Consensus 6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------ 73 (217)
.+.+....++|+|+|.||+|||||.|.+++.+..+......++.....-+-..+. .++.|+||||..
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~ 143 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRRHHLMM 143 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhhHHHHH
Confidence 3445677899999999999999999999999999888777777666666644444 699999999921
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc-------------CCC---
Q 027856 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR-------------AVS--- 137 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-------------~~~--- 137 (217)
.+.......+..+|.+++|+|+++....-. ...+..+..+. .+|-++|+||.|....+ ++.
T Consensus 144 s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k 220 (379)
T KOG1423|consen 144 SVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK 220 (379)
T ss_pred HhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence 111223345678999999999997433211 23444454443 78889999999975321 121
Q ss_pred HHHHHHHHHHc---------C---C-cEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 138 TEDATAFAERE---------N---T-FFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 138 ~~~~~~~~~~~---------~---~-~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
.+..+++.... | + .+|.+||++|+|++++-++++..+.
T Consensus 221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 11112222211 1 2 2899999999999999999886543
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=1.6e-18 Score=141.40 Aligned_cols=161 Identities=21% Similarity=0.210 Sum_probs=104.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC---CCc--ccceeEeEEEE------------EEE----CC------eEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL---ESK--STIGVEFATRS------------IRC----DD------KIVK 63 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~---~~~--~~~~~~~~~~~------------~~~----~~------~~~~ 63 (217)
...++|+++|+.++|||||+++|.+..... +.. .|....+.... +.. +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356899999999999999999997643211 100 11111110000 000 11 1357
Q ss_pred EEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHH
Q 027856 64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STED 140 (217)
Q Consensus 64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~ 140 (217)
+.+|||||++.|...+......+|++++|+|++++. ..+. ...+..+... ...|+++++||+|+.+.... ..++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 899999999999888888888999999999998643 1111 1222222222 13568999999999753211 1233
Q ss_pred HHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 141 ATAFAERE---NTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 141 ~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
+..+.... +++++++||++|.|+++++++|...+
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 34444332 56799999999999999999998754
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=2.5e-18 Score=118.37 Aligned_cols=135 Identities=24% Similarity=0.263 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----hhhhhhhhhhhhcCCcEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----QERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~ii 90 (217)
||+++|+.|+|||||+++|.+... .+..|..+. +.+ .++|||| ...+.+........+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998764 343443322 111 3699999 4455555555667999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~ 169 (217)
++.|++++.+.-. ..+ ... -.+|+|=|+||+|+.. +....+.++++.+..|+. +|++|+.+|+|++++.+.
T Consensus 69 ll~dat~~~~~~p-P~f----a~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGF----ASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-chh----hcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998753210 111 122 1689999999999984 234567777888888866 899999999999999887
Q ss_pred HH
Q 027856 170 VL 171 (217)
Q Consensus 170 i~ 171 (217)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 63
No 211
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=5.6e-18 Score=143.86 Aligned_cols=155 Identities=19% Similarity=0.141 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc---CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
-|+++|+.++|||||+++|++.. +..+....++++.....+...+ ...+.+|||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 48999999999999999999743 3333323334433333332222 2358999999999998877788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC--CHHHHHHHHHHcC---CcEEEEecCCCCCHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV--STEDATAFAEREN---TFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 165 (217)
|+|+++....+..+ .+..+... +.| +++|+||+|+.+.... ..+++.++....+ .+++++||++|.|+++
T Consensus 81 VVda~eg~~~qT~e-hl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVMAQTRE-HLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCcHHHHH-HHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99998743222211 12223222 455 5799999999753221 1233444444443 6799999999999999
Q ss_pred HHHHHHHHH
Q 027856 166 AFTEVLTQI 174 (217)
Q Consensus 166 ~~~~i~~~~ 174 (217)
+++.|....
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 999987644
No 212
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.80 E-value=8.5e-19 Score=117.71 Aligned_cols=157 Identities=22% Similarity=0.340 Sum_probs=117.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
+...++|+++|-.++|||||++.|.+...... .+|.|.. ...+.+++. +.+++||..|+...+..|.+||.++|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~GFn--~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNGFN--TKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhc-cccCCcc--eEEEeecCc-EEEEEEecCCccccchhhhhhhhccceE
Confidence 35679999999999999999999987764333 3565544 445555554 6999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-----CcEEEEecCCCCCH
Q 027856 90 LLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-----TFFMETSALESMNV 163 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 163 (217)
|||+|..+..-++++.. +.+.+....-...|+++..||.|+.. ....++....+...+ .-+-++||.+++++
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt--aa~~eeia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT--AAKVEEIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh--hcchHHHHHhcchhhhhhceEEeeeCccccccCc
Confidence 99999888877877644 44444444446789999999999865 233333332222222 22678999999999
Q ss_pred HHHHHHHHH
Q 027856 164 ENAFTEVLT 172 (217)
Q Consensus 164 ~~~~~~i~~ 172 (217)
.+-.+|+.+
T Consensus 168 ~dg~~wv~s 176 (185)
T KOG0074|consen 168 TDGSDWVQS 176 (185)
T ss_pred cCcchhhhc
Confidence 888888764
No 213
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=2.5e-18 Score=137.41 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=110.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR--------AITSAY 82 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~ 82 (217)
..++++++|.||+|||||+|+|++.....+. .+.++-+.....+.++| +.+.++||+|.++-. ......
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4689999999999999999999999877654 33344444445555566 789999999954321 223346
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856 83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
+.++|.+++|+|++.+.+-.+. ..+. ....+.|+++|.||.|+...... .......+..++.+|+++|+|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~-----~~~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIEL-----ESEKLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhccccccc-----chhhccCCCceEEEEecCccC
Confidence 7899999999999986332221 1222 33357999999999999774321 111222344699999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIYRV 177 (217)
Q Consensus 163 i~~~~~~i~~~~~~~ 177 (217)
++.+.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999988777755
No 214
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.79 E-value=2.8e-18 Score=140.00 Aligned_cols=163 Identities=22% Similarity=0.251 Sum_probs=103.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC---cccceeEeE--EEEE------------E----EC--C----eE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES---KSTIGVEFA--TRSI------------R----CD--D----KI 61 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~--~~~~------------~----~~--~----~~ 61 (217)
+....++|+++|+.++|||||+.+|.+....... ....+.... ...+ . ++ + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 3455699999999999999999999764221111 111111111 0000 0 00 1 12
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--ST 138 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 138 (217)
..+.||||||++.+..........+|++++|+|++++. ..+.... +..+... ...|+++|+||+|+.+.... ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 57899999999988776666667889999999999653 2222222 2222222 13468999999999753321 12
Q ss_pred HHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 139 EDATAFAER---ENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 139 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
+++..++.. .+.+++++||++|.|++++++.|...+
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 334444433 246799999999999999999988755
No 215
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.5e-17 Score=119.59 Aligned_cols=160 Identities=20% Similarity=0.244 Sum_probs=114.4
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhhhh
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----------QERYRA 77 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~ 77 (217)
-+.+..+-|+++|.+|+|||||||+|+++.--.....|+|.+.....+.+++. +.++|.|| .+.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 35567789999999999999999999998755556678888888888877774 78999999 344455
Q ss_pred hhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH----cCC
Q 027856 78 ITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER----ENT 150 (217)
Q Consensus 78 ~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~ 150 (217)
....|+. +..++++++|+..+..-.+. ..++.+... ++|+++++||+|.....+... .+...+.. ...
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~~~~k-~l~~v~~~l~~~~~~ 170 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKSERNK-QLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChhHHHH-HHHHHHHHhcCCCCc
Confidence 5555553 45788999999877554332 344444443 899999999999876433221 11222222 222
Q ss_pred c--EEEEecCCCCCHHHHHHHHHHHHH
Q 027856 151 F--FMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 151 ~--~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
. ++.+|+..+.|++++...|.+.+.
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhh
Confidence 2 788999999999999998887664
No 216
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=8.5e-18 Score=127.58 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=81.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCC--------CC--------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSL--------ES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
+|+++|+.|+|||||+++|+...-.. .. ....+.+.......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998642110 00 011222233333334444578999999999988888
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
+..+++.+|++++|+|+++..... ...++..+... +.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHHc---CCCEEEEEECcccc
Confidence 888999999999999998865432 34455555443 78999999999985
No 217
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=1e-17 Score=141.57 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=102.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc----cceeEeEEEEEEE--CCeEE----------EEEEEeCCChhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIGVEFATRSIRC--DDKIV----------KAQIWDTAGQERY 75 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~----------~~~l~Dt~G~~~~ 75 (217)
..+.|+++|++++|||||+++|.+......... +.+.......... .+... .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 456799999999999999999987754332221 2222221111100 01111 2689999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-c---CCCH--------H-
Q 027856 76 RAITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-R---AVST--------E- 139 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-~---~~~~--------~- 139 (217)
..++...+..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+... . .... .
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9888888899999999999987 55544432 2222 37899999999998521 0 0000 0
Q ss_pred ----------HHHHHHHH---------------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 140 ----------DATAFAER---------------ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 140 ----------~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+....... ...+++++||.+|+|+.+++..+...+.
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 01011111 1256999999999999999988875443
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=5.2e-18 Score=127.24 Aligned_cols=113 Identities=27% Similarity=0.314 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCC-----------------cccceeEeEE--EEEEE---CCeEEEEEEEeCCCh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------KSTIGVEFAT--RSIRC---DDKIVKAQIWDTAGQ 72 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~--~~~~~---~~~~~~~~l~Dt~G~ 72 (217)
+|+++|+.|+|||||+++|+........ ....+.+... ..+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999975433210 0111222211 22212 355689999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
..+......++..+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9888888888999999999999987765533 334444332 268999999999975
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=1.4e-17 Score=135.35 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=98.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC--------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|+.++|||||+++|++..... ......+.+.......+......+.+|||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4567999999999999999999998732100 00112344444445555545568899999999988
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCCC---HHHHHHHHHHcC--
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAVS---TEDATAFAEREN-- 149 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~-- 149 (217)
.......+..+|++++|+|+......+.. ..+..+... ++| +++++||+|+.+..+.. .+++..+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 87777777899999999999875332222 222333332 677 67889999986432211 123444444443
Q ss_pred ---CcEEEEecCCCC
Q 027856 150 ---TFFMETSALESM 161 (217)
Q Consensus 150 ---~~~~~~Sa~~~~ 161 (217)
++++++||++|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 165 GDDIPVIRGSALKAL 179 (394)
T ss_pred cCCccEEEeeccccc
Confidence 579999999983
No 220
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=3e-17 Score=133.62 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=98.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcC-----C---------CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF-----S---------LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|++++|||||+++|++... . .......+++.......+......+.|+||||++.|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 45679999999999999999999996210 0 000112334444444445444568899999999988
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCccCC---CHHHHHHHHHHcC--
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAV---STEDATAFAEREN-- 149 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 149 (217)
.......+..+|++++|+|+.+....+. ...+..+.. .++|.+ +++||+|+.+..+. ...++..+....+
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 8777777889999999999987543222 223333332 267755 57999999642211 1124444554433
Q ss_pred ---CcEEEEecCCCCC
Q 027856 150 ---TFFMETSALESMN 162 (217)
Q Consensus 150 ---~~~~~~Sa~~~~~ 162 (217)
++++++||.+|.|
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 165 GDDTPIIRGSALKALE 180 (396)
T ss_pred cCceeEEecchhcccc
Confidence 5799999999853
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=1.1e-17 Score=125.99 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCC----------------------------C-CCcccceeEeEEEEEEECCeEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFS----------------------------L-ESKSTIGVEFATRSIRCDDKIVKAQ 65 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~----------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (217)
+|+++|+.++|||||+.+|+...-. . ......+++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999742110 0 0001123333333344444457899
Q ss_pred EEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc--cCC
Q 027856 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-------TFENVERWLKELRDHTDSNIVIMLVGNKADLRHL--RAV 136 (217)
Q Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~--~~~ 136 (217)
+|||||+..+...+...+..+|++++|+|+++.. ..+....+ ...... ...|+++++||+|+... .+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc--CCCeEEEEEEccccccccccHH
Confidence 9999999888777777788999999999998842 11222222 222222 13689999999999731 111
Q ss_pred CH----HHHHHHHHHcC-----CcEEEEecCCCCCHH
Q 027856 137 ST----EDATAFAEREN-----TFFMETSALESMNVE 164 (217)
Q Consensus 137 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 164 (217)
.. +++.......+ .+++++||++|.|+.
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 22222334433 569999999999986
No 222
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.76 E-value=3.8e-18 Score=138.65 Aligned_cols=168 Identities=26% Similarity=0.285 Sum_probs=125.7
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC
Q 027856 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
++......+||+++|+.|+||||||-.|+...+....++-.. .......+....+...++|++..+..+.....-+++
T Consensus 2 ~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eirk 79 (625)
T KOG1707|consen 2 SDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRK 79 (625)
T ss_pred CCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhh
Confidence 344556789999999999999999999999998765543321 111123344444678999998766655556677899
Q ss_pred CcEEEEEEECCChhhHHHHH-HHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHH-HHHHHHHc-CCc-EEEEecCC
Q 027856 86 AVGALLVYDVTRHVTFENVE-RWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTED-ATAFAERE-NTF-FMETSALE 159 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~~-~~~~Sa~~ 159 (217)
+|+++++|+++++.|.+.+. .|+..+++..+ ..+|+|+|+||+|.......+.+. .......+ .+. .|+|||++
T Consensus 80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 99999999999999999985 69999998875 478999999999997654442232 22222222 233 89999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQIY 175 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~~ 175 (217)
-.++.++|....+.+.
T Consensus 160 ~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhHhhhhhhhheee
Confidence 9999999998776655
No 223
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=2e-17 Score=125.67 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=119.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh-------hhhhcC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT-------SAYYRG 85 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~ 85 (217)
...|.+||.||+|||||++++....-.....+.++......++.+++.. ++.+-|.||..+-.++. ...+..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 4568999999999999999999987665555666777777777776654 59999999944332222 234567
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCC
Q 027856 86 AVGALLVYDVTRH---VTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALE 159 (217)
Q Consensus 86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 159 (217)
++.++||+|++.. ..|+.++.+..++..+.. .+.|.++|+||+|+.+. ....+.++++...-+ ++++||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeecc
Confidence 8999999999998 778888888777766554 47899999999998531 122246667776545 99999999
Q ss_pred CCCHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLT 172 (217)
Q Consensus 160 ~~~i~~~~~~i~~ 172 (217)
++++.++++.|-+
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9999998887654
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=3.1e-17 Score=133.52 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=98.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcC------C-------C-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF------S-------L-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~------~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|+.++|||||+++|++... . . ......+++.....+.+......+.||||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 45679999999999999999999984310 0 0 00112334444455555555578899999999988
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCccCCC---HHHHHHHHHHcC--
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVS---TEDATAFAEREN-- 149 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~-- 149 (217)
..........+|++++|+|+......+.. ..+..+... ++|.+ +++||+|+.+..+.. .+++..++...+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 87666667889999999999874332222 222223322 66655 689999987532211 234555555544
Q ss_pred ---CcEEEEecCCCC
Q 027856 150 ---TFFMETSALESM 161 (217)
Q Consensus 150 ---~~~~~~Sa~~~~ 161 (217)
++++++||.+|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 679999999875
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.9e-17 Score=136.63 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=118.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh------hhhhhhhhhhh--c
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ------ERYRAITSAYY--R 84 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~~~~~~~~~--~ 84 (217)
..+|+++|+||+|||||.|+|+|........+..+.+.....+.+.+. .++++|.||- ...+.....++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 356999999999999999999999987777788888888888877775 5899999992 12223333333 4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
..|+++-|+|+++.+- ++ ++.-++.+ -+.|++++.|++|..+.+.+.. +.+++.+..|+++++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeR--nL-yltlQLlE---~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLER--NL-YLTLQLLE---LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHH--HH-HHHHHHHH---cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHH
Confidence 6799999999988752 11 12222223 3899999999999987555433 3566788899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYR 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
++...+.+....
T Consensus 154 ~l~~~i~~~~~~ 165 (653)
T COG0370 154 ELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHhccc
Confidence 999998864443
No 226
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.5e-18 Score=116.87 Aligned_cols=160 Identities=20% Similarity=0.299 Sum_probs=118.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
++...+|.++|..|+|||++..++.-.+..... |+++....... + ++.++++||..|+-..+..|+-|+.+.|++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvttk-Ptigfnve~v~--y--KNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVTTK-PTIGFNVETVP--Y--KNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCcccccC-CCCCcCccccc--c--ccccceeeEccCcccccHHHHHHhcccceE
Confidence 446789999999999999999988776654433 56665443333 3 568999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHH-----HHHHcCCcEEEEecCCCCCH
Q 027856 90 LLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATA-----FAERENTFFMETSALESMNV 163 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i 163 (217)
|||+|.++..-..... .++..+.+..-.+..+++++||.|... .....|+.. ..+..-..+|++||.+|+|+
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~--~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG--ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL 167 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh--hhhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence 9999999877554443 355555444445677889999999865 222222221 12222356999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIYR 176 (217)
Q Consensus 164 ~~~~~~i~~~~~~ 176 (217)
+..++|+.+-+.+
T Consensus 168 d~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 168 DPAMDWLQRPLKS 180 (182)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999987653
No 227
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=9.4e-17 Score=122.88 Aligned_cols=156 Identities=21% Similarity=0.203 Sum_probs=112.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh-----hh---hh-hhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ-----ER---YR-AITSAY 82 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----~~---~~-~~~~~~ 82 (217)
....|+|.|.||||||||++.+++........|.++-......+...+ ..++++||||. ++ .. ....+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 467899999999999999999999987766667777777777665555 58899999991 11 11 111222
Q ss_pred hcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCC
Q 027856 83 YRGAVGALLVYDVTR--HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALE 159 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 159 (217)
-+-.++++|++|.+. ..+.+.-..++.++.... +.|+++|+||+|..+.. ..+++.......+.. ...+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e--~~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEE--KLEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchh--HHHHHHHHHHhhccccccceeeee
Confidence 234578999999985 557777778999998887 48999999999987633 344454445554443 77888888
Q ss_pred CCCHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQ 173 (217)
Q Consensus 160 ~~~i~~~~~~i~~~ 173 (217)
+.+.+..-..+...
T Consensus 321 ~~~~d~~~~~v~~~ 334 (346)
T COG1084 321 GCGLDKLREEVRKT 334 (346)
T ss_pred hhhHHHHHHHHHHH
Confidence 88877666555544
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=1.5e-16 Score=129.98 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=100.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC------C--------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL------E--------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|++++|||||+++|++..-.. . .....+++.......+......+.|+||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4556999999999999999999999752110 0 0111334444444444444568899999999888
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHcC--
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAEREN-- 149 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 149 (217)
.......+..+|++++|+|+.....-+. ...+..+... ++| +++++||+|+.+..+. ..+++..+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 8777777889999999999987543222 2233333332 677 6789999999753221 1123444444433
Q ss_pred ---CcEEEEecCCCCCH
Q 027856 150 ---TFFMETSALESMNV 163 (217)
Q Consensus 150 ---~~~~~~Sa~~~~~i 163 (217)
++++++||.+|.|+
T Consensus 165 ~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCcceEEEcchhhcccc
Confidence 57999999998754
No 229
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=1.5e-16 Score=119.75 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-----------------------cceeEeEEEEE-------------EEC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKS-----------------------TIGVEFATRSI-------------RCD 58 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~-------------~~~ 58 (217)
||+++|+.++|||||+++|..+.+...... ..+.+.....+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997655331110 01111100000 011
Q ss_pred CeEEEEEEEeCCChhhhhhhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856 59 DKIVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 136 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 136 (217)
.....+.++||||++.|.......+. .+|++++|+|+.....-.. ..++..+... ++|+++|+||+|+......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 12357899999999888765554443 6899999999987654322 3344444433 7899999999998653211
Q ss_pred --CHHHHHHHHHH--------------------------cCCcEEEEecCCCCCHHHHHHHHH
Q 027856 137 --STEDATAFAER--------------------------ENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 137 --~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
..+++..+... ..+++|.+|+.+|+|++++...|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11222222221 124799999999999999887764
No 230
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=1.6e-16 Score=117.67 Aligned_cols=161 Identities=12% Similarity=0.146 Sum_probs=97.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccccee---EeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhhhhhc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV---EFATRSIRCDDKIVKAQIWDTAGQERYRA-----ITSAYYR 84 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~ 84 (217)
+++|+++|.+|+|||||+|+|++.........+.+. +.....+... ....+.+|||||...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999996654322222221 1111111111 123689999999532211 2223367
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-----------CCHHHHHHHHH----HcC
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-----------VSTEDATAFAE----REN 149 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~ 149 (217)
.+|+++++.+. ..... -..++..+... +.|+++|+||+|+....+ ...++..+.+. ..+
T Consensus 80 ~~d~~l~v~~~-~~~~~--d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST-RFSSN--DVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC-CCCHH--HHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78998888542 22111 13456666554 679999999999843111 01111222222 212
Q ss_pred ---CcEEEEecC--CCCCHHHHHHHHHHHHHHHHhh
Q 027856 150 ---TFFMETSAL--ESMNVENAFTEVLTQIYRVVSR 180 (217)
Q Consensus 150 ---~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~~ 180 (217)
..+|.+|+. .+.++..+.+.|+..+.+....
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 358999998 5789999999999998876543
No 231
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=120.94 Aligned_cols=157 Identities=20% Similarity=0.167 Sum_probs=116.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYY 83 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 83 (217)
+...+++++|.|++|||||++.|++........++++.+..+..+.+++ ..+++.|+||.-.-. .......
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3467899999999999999999999887766667778888888998888 689999999843221 3345677
Q ss_pred cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhc-----------------------------------------------
Q 027856 84 RGAVGALLVYDVTRHVT-FENVERWLKELRDHT----------------------------------------------- 115 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~----------------------------------------------- 115 (217)
++||++++|+|+....+ .+.+...++......
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999986543 322322222211000
Q ss_pred ------------------CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 116 ------------------DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 116 ------------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
...+|.++|.||.|+.. .++.....+.. .++.+||..+.|++++.+.|.+.+--
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 01579999999999854 44455455444 79999999999999999999987653
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=3.4e-16 Score=120.78 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCC----------cc----------cceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES----------KS----------TIGVEFATRSIRCDDKIVKAQIWDTAGQE 73 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~----------~~----------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
-+|+++|++|+|||||+++|+...-.... .. ..+.+.......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999999853111000 00 11223333334445555899999999998
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
.|.......++.+|++++|+|+++..... ...++..... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 88877777889999999999998754322 2334443332 3789999999999855
No 233
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=2.7e-16 Score=121.88 Aligned_cols=143 Identities=18% Similarity=0.230 Sum_probs=93.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCC----------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLE----------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY------ 75 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 75 (217)
..++|+|+|.+|+|||||+|+|++..+... ...|.+.......+..++..+.+.+|||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999877543 2344455555556666788889999999993111
Q ss_pred ------------h--------hhhhhhhc--CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 76 ------------R--------AITSAYYR--GAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 76 ------------~--------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
. ......+. .+|+++|+++.+... +... ...+..+. ..+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 0 00101222 568888888876422 1111 22333333 2689999999999865
Q ss_pred ccC--CCHHHHHHHHHHcCCcEEEEecCC
Q 027856 133 LRA--VSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
..+ .......+.+..+++.++......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 322 223445666777888888876643
No 234
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=1.5e-16 Score=119.31 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCC----------------CcccceeEeEEEEEEEC--------CeEEEEEEEeCC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKSTIGVEFATRSIRCD--------DKIVKAQIWDTA 70 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~ 70 (217)
+|+++|+.++|||||+.+|+...-... .....++......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999986431100 00111222222223332 346899999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
|++.|.......+..+|++++|+|+.+..+.+....+ ..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCcc
Confidence 9999999999999999999999999987655442222 22222 368999999999975
No 235
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=1.1e-15 Score=124.48 Aligned_cols=149 Identities=16% Similarity=0.155 Sum_probs=98.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC---C-----------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS---L-----------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|+.++|||||+++|++.... . ......+++.......+......+.++||||+..|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356799999999999999999999973110 0 00112334444444555445568899999999888
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCccCC---CHHHHHHHHHHc---
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAV---STEDATAFAERE--- 148 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~--- 148 (217)
.......+..+|++++|+|+......+. ...+..+... +.|.+ +++||+|+.+..+. ...++..+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 8777777899999999999987543322 2333334332 67875 58999998642221 112333344332
Q ss_pred --CCcEEEEecCCCCC
Q 027856 149 --NTFFMETSALESMN 162 (217)
Q Consensus 149 --~~~~~~~Sa~~~~~ 162 (217)
+++++++||.+|.+
T Consensus 165 ~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 165 GDDTPIIRGSALKALE 180 (396)
T ss_pred ccCCcEEEeecccccC
Confidence 36799999998753
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=3.1e-16 Score=129.96 Aligned_cols=154 Identities=22% Similarity=0.187 Sum_probs=97.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-------------Ccc------------------cceeEeEEEEEEEC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-------------SKS------------------TIGVEFATRSIRCD 58 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~ 58 (217)
....++|+++|+.++|||||+.+|+...-... ... ..+++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35679999999999999999999986431110 000 11222233333344
Q ss_pred CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH
Q 027856 59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST 138 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~ 138 (217)
.....+.||||||++.|.......+..+|++++|+|+.....-...+.+. .+... + ..++++++||+|+.+.++...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g-~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL-G-IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh-C-CCceEEEEEeeccccchhHHH
Confidence 44568899999999888766666679999999999998653222112211 12111 1 247889999999874322212
Q ss_pred HHHH----HHHHHc----CCcEEEEecCCCCCHHHH
Q 027856 139 EDAT----AFAERE----NTFFMETSALESMNVENA 166 (217)
Q Consensus 139 ~~~~----~~~~~~----~~~~~~~Sa~~~~~i~~~ 166 (217)
++.. .+.... ..+++++||++|.|+.+.
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2222 222332 366999999999998764
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=2.2e-16 Score=121.96 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC--CC---CC-----------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF--SL---ES-----------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~--~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
+|+++|++|+|||||+++|+...- .. .. ....+++.......+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211 00 00 011222233222333333478999999999888888
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
+...++.+|++++|+|+.+...... ...+..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8889999999999999987543222 233333433 3789999999999864
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=6.3e-16 Score=127.75 Aligned_cols=150 Identities=14% Similarity=0.109 Sum_probs=99.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcC------CC--------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF------SL--------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|+.++|||||+++|+...- .. ......+++.......+......+.++|+||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45679999999999999999999996211 00 01122333333334444434468899999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHc---
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAERE--- 148 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~--- 148 (217)
.......+..+|++++|+|+.+....+. ..++..+... ++| +++++||+|+.+..+. ..+++..+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 8888888889999999999987644333 2333333333 677 7789999998652211 112344444443
Q ss_pred --CCcEEEEecCCCCCH
Q 027856 149 --NTFFMETSALESMNV 163 (217)
Q Consensus 149 --~~~~~~~Sa~~~~~i 163 (217)
.++++++|+.+|.++
T Consensus 234 ~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 234 GDDIPIISGSALLALEA 250 (478)
T ss_pred cCcceEEEEEccccccc
Confidence 467999999988543
No 239
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=1e-16 Score=124.22 Aligned_cols=146 Identities=19% Similarity=0.239 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCC------------------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLES------------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 76 (217)
+|+++|++|+|||||+++|+...-.... ....+.......+.+++ +.+.+|||||...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999864211100 00112222223333333 688999999998888
Q ss_pred hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHH-HHHHHHHcCCc--EE
Q 027856 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTED-ATAFAERENTF--FM 153 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~--~~ 153 (217)
..+...+..+|++++|+|+++.........| ..+.. .++|+++++||+|.... ..++ ...+....+.. .+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence 8888889999999999999886554433223 33333 37899999999998653 2332 33333334444 33
Q ss_pred EEecCCCCCHHHHHHH
Q 027856 154 ETSALESMNVENAFTE 169 (217)
Q Consensus 154 ~~Sa~~~~~i~~~~~~ 169 (217)
.+...++.++..+.+.
T Consensus 152 ~ip~~~~~~~~~~vd~ 167 (268)
T cd04170 152 QLPIGEGDDFKGVVDL 167 (268)
T ss_pred EecccCCCceeEEEEc
Confidence 4445555554444333
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=4.8e-16 Score=126.89 Aligned_cols=149 Identities=23% Similarity=0.196 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCC-------------C------------------cccceeEeEEEEEEECCeEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLE-------------S------------------KSTIGVEFATRSIRCDDKIV 62 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~~~~~~ 62 (217)
++|+++|+.++|||||+.+|+...-... . ....+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999975321100 0 00112223333333434446
Q ss_pred EEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH---
Q 027856 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE--- 139 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~--- 139 (217)
.+.||||||++.|.......+..+|++++|+|+......+..+.+. .+.... ..++++++||+|+.+.+....+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 8899999999998777777789999999999998754322222222 222221 3468899999998653221112
Q ss_pred -HHHHHHHHcC---CcEEEEecCCCCCHHH
Q 027856 140 -DATAFAEREN---TFFMETSALESMNVEN 165 (217)
Q Consensus 140 -~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 165 (217)
+...+....+ ++++++||.+|.|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222333333 4699999999999875
No 241
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.69 E-value=1.9e-15 Score=102.54 Aligned_cols=106 Identities=25% Similarity=0.279 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhhhhhc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER---------YRAITSAYYR 84 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~ 84 (217)
+|+++|.+|+|||||+|+|++..... ...+..+.......+.+++. .+.++||||... ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 69999999999999999999864322 22222223333344555664 557999999421 1112233348
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 127 (217)
.+|++++|+|++++.. +....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999887432 22344545553 48999999998
No 242
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=2.4e-15 Score=111.37 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc--ccceeEeEEEEEEECCeEEEEEEEeCCChhhh-------h----hhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK--STIGVEFATRSIRCDDKIVKAQIWDTAGQERY-------R----AITS 80 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~----~~~~ 80 (217)
++|+++|.+|+|||||+|++++........ ...+...........+ ..+.++||||.... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999987543331 1122222222333344 58899999993221 1 1112
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCccCC------CHHHHHHHHHHcCCcE
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS--NIVIMLVGNKADLRHLRAV------STEDATAFAERENTFF 152 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 152 (217)
....++|++++|+++.+ .+-++ ...++.+....+. -.++++++|+.|......+ ....+.......+..|
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999887 33222 3445555544432 2578899999997543211 1133444555555556
Q ss_pred EEEecC-----CCCCHHHHHHHHHHHHHH
Q 027856 153 METSAL-----ESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 153 ~~~Sa~-----~~~~i~~~~~~i~~~~~~ 176 (217)
+.++.. .+.++.++++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 666544 455677777777666554
No 243
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.68 E-value=5.1e-16 Score=116.43 Aligned_cols=161 Identities=17% Similarity=0.256 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-----hhhhhhhcCCcE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-----AITSAYYRGAVG 88 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~d~ 88 (217)
||+++|+.+|||||+.+.+.++..+.... -..+.+.....+...+ .+.+.+||+||+..+. ......++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999998775433221 1222333333333333 3699999999976443 346778899999
Q ss_pred EEEEEECCChhhHHHHH---HHHHHHHhhcCCCCcEEEEEeCCCCCCcc--CCC----HHHHHHHHHHcC---CcEEEEe
Q 027856 89 ALLVYDVTRHVTFENVE---RWLKELRDHTDSNIVIMLVGNKADLRHLR--AVS----TEDATAFAEREN---TFFMETS 156 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~---~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~----~~~~~~~~~~~~---~~~~~~S 156 (217)
+|||+|+.+.+-.+.+. ..+..+.... ++..+.+.++|+|+..+. ... .+++.+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999998544334443 4444444443 588899999999986421 111 122233334444 6699999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 027856 157 ALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~~~~~ 178 (217)
..+ ..+-+.|..+++.+.-+.
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTH
T ss_pred CcC-cHHHHHHHHHHHHHcccH
Confidence 998 478888888888776443
No 244
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=5.5e-15 Score=120.00 Aligned_cols=159 Identities=17% Similarity=0.184 Sum_probs=113.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
.++=|.++|+-..|||||+..+-+......-.-.++-...-..+..+ +....++|+||||++.|..+...-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34568999999999999999999887755433333322333333333 12358899999999999999988889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-------HcC--CcEEEEecCCCC
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-------REN--TFFMETSALESM 161 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~Sa~~~~ 161 (217)
+|+++++.--.+ ..+.+......+.|+++++||+|..+. .......-.. .++ ..++++||++|+
T Consensus 84 LVVa~dDGv~pQ----TiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQ----TIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchh----HHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999865333 233344444459999999999998742 2222222222 233 449999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQIYRV 177 (217)
Q Consensus 162 ~i~~~~~~i~~~~~~~ 177 (217)
|+.+++..++-.....
T Consensus 157 Gi~eLL~~ill~aev~ 172 (509)
T COG0532 157 GIDELLELILLLAEVL 172 (509)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999988555444
No 245
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=117.10 Aligned_cols=166 Identities=20% Similarity=0.101 Sum_probs=113.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhhcC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYYRG 85 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 85 (217)
.-.|.+||.|++|||||+++++.........+.++.......+.+.+. -.+.+=|.||.-+-. ......+..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 456889999999999999999998766655566667777777766333 478999999943221 112234567
Q ss_pred CcEEEEEEECCChh---hHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCC
Q 027856 86 AVGALLVYDVTRHV---TFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALE 159 (217)
Q Consensus 86 ~d~ii~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 159 (217)
+.++++|+|++..+ ..++......+|..+.. .++|.+||+||+|+....+...+..+.+....+.. .+++||.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 88999999998644 25555566666655533 47899999999996542222222223333333333 22299999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 027856 160 SMNVENAFTEVLTQIYRVVS 179 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~~~~~~ 179 (217)
++|++++...+.+.+.+...
T Consensus 318 ~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 318 REGLDELLRALAELLEETKA 337 (369)
T ss_pred ccCHHHHHHHHHHHHHHhhh
Confidence 99999999999988877753
No 246
>PLN03127 Elongation factor Tu; Provisional
Probab=99.68 E-value=2.5e-15 Score=123.55 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=99.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC------cCCCC--------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN------EFSLE--------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|+.++|||||+++|.+. ..... .....+++.......+.....++.|+||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 346799999999999999999999732 11000 0111333444445555555568899999999888
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCCC---HHHHHHHHHHc---
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAVS---TEDATAFAERE--- 148 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~--- 148 (217)
.......+..+|++++|+|+......+. ...+..+... ++| +++++||+|+.+..+.. ..++.++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7766666778999999999987543322 2223333332 678 57889999997522211 11222333222
Q ss_pred --CCcEEEEecC---CCCC-------HHHHHHHHHHH
Q 027856 149 --NTFFMETSAL---ESMN-------VENAFTEVLTQ 173 (217)
Q Consensus 149 --~~~~~~~Sa~---~~~~-------i~~~~~~i~~~ 173 (217)
.++++++|+. +|.| +.++++.+.+.
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 3568888876 4544 45555555443
No 247
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9e-16 Score=124.20 Aligned_cols=162 Identities=20% Similarity=0.237 Sum_probs=118.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcC--CC-----------CCcccceeEeEEE--EE-EECCeEEEEEEEeCCChh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF--SL-----------ESKSTIGVEFATR--SI-RCDDKIVKAQIWDTAGQE 73 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~-----------~~~~~~~~~~~~~--~~-~~~~~~~~~~l~Dt~G~~ 73 (217)
.+..-+++|+-+-..|||||..+|+...- +. ......|++.... .+ ..++..+.++++||||+.
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 35677999999999999999999886321 00 0011222222222 22 224777999999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHcCCcE
Q 027856 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAERENTFF 152 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~ 152 (217)
.|..-....+.-|+++++|+|++....-+.+..++..+.. +..+|.|+||+|+...+.- ......+.+.....+.
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence 9988888888999999999999998776777777777664 7789999999999764321 1222334444455679
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 027856 153 METSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 153 ~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+.+||++|.|+.++|+.|++.+.
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhCC
Confidence 99999999999999999887664
No 248
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=1.8e-15 Score=118.95 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=55.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE---------------------CC-eEEEEEEEeCCCh-
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC---------------------DD-KIVKAQIWDTAGQ- 72 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~Dt~G~- 72 (217)
|+++|.|++|||||+++|++........+..+.+.......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999998754322233333333322221 22 3478999999996
Q ss_pred ---hhhhhhhh---hhhcCCcEEEEEEECC
Q 027856 73 ---ERYRAITS---AYYRGAVGALLVYDVT 96 (217)
Q Consensus 73 ---~~~~~~~~---~~~~~~d~ii~v~d~~ 96 (217)
+.+..+.. ..++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 33443333 3589999999999997
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.67 E-value=2.5e-15 Score=123.74 Aligned_cols=151 Identities=16% Similarity=0.137 Sum_probs=98.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCc--CCC---------------------------CCcccceeEeEEEEEEECCeE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FSL---------------------------ESKSTIGVEFATRSIRCDDKI 61 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|+.++|||||+.+|+... ... ......+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456899999999999999999998621 000 000122333444444555556
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCC--
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-------TFENVERWLKELRDHTDSNIV-IMLVGNKADLR-- 131 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~-- 131 (217)
..+.|+||||+..|.......+..+|++++|+|+.... ..+..+.|. .+... ++| +++++||+|..
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~---gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL---GVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc---CCCeEEEEEEccccccc
Confidence 79999999999999888888889999999999998752 011112222 23222 665 67899999943
Q ss_pred CccCCCH----HHHHHHHHHc-----CCcEEEEecCCCCCHHH
Q 027856 132 HLRAVST----EDATAFAERE-----NTFFMETSALESMNVEN 165 (217)
Q Consensus 132 ~~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 165 (217)
+..+... +++..+.... .++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2111112 3333333333 35699999999999854
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.67 E-value=2.6e-15 Score=125.58 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=80.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCc--CCCC------------------CcccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FSLE------------------SKSTIGVEFATRSIRCDDKIVKAQIWDTA 70 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 70 (217)
....+|+|+|++++|||||+++|+... .... .....+++.......+....+.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 457799999999999999999997411 1000 00011223333333344445789999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
|+..|.......+..+|++++|+|+++..... ...++..... .++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh---cCCCEEEEEECCccc
Confidence 99988877777889999999999998754222 2344444333 389999999999974
No 251
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=1.3e-15 Score=132.16 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=84.1
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC--------CC-----C-----cccceeEeEEEEEEECCeEEEEEEEeC
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS--------LE-----S-----KSTIGVEFATRSIRCDDKIVKAQIWDT 69 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~--------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt 69 (217)
.+.+...+|+|+|+.|+|||||+++|+...-. .. + ....++......+.+ ..+.+++|||
T Consensus 3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDt 80 (687)
T PRK13351 3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDT 80 (687)
T ss_pred CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEEC
Confidence 34456789999999999999999999853210 00 0 011112222223333 3478999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
||+..+...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 99999988889999999999999999987665544334 33333 3789999999999853
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=2.1e-15 Score=129.58 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=97.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-------------Ccc------------------cceeEeEEEEEEE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-------------SKS------------------TIGVEFATRSIRC 57 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~ 57 (217)
+....++|+++|++++|||||+++|+...-... ... ..+.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345568999999999999999999997432111 000 0122222223333
Q ss_pred CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856 58 DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 137 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~ 137 (217)
......+.|+||||++.+.......+..+|++++|+|+......+..+. ...+... ...++++++||+|+.+.....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~--~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLL--GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHh--CCCeEEEEEEecccccchhHH
Confidence 3344578899999998887666667889999999999976543222121 1222222 135788999999986422211
Q ss_pred HH----HHHHHHHHcC---CcEEEEecCCCCCHHH
Q 027856 138 TE----DATAFAEREN---TFFMETSALESMNVEN 165 (217)
Q Consensus 138 ~~----~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 165 (217)
.+ ++..+....+ .+++++||++|.|+.+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22 2223333444 4599999999999874
No 253
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.67 E-value=1.8e-15 Score=124.54 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=101.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC--CC---------------------------CCcccceeEeEEEEEEECCeE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF--SL---------------------------ESKSTIGVEFATRSIRCDDKI 61 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|+.++|||||+.+|+...- .. ......+++.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4568999999999999999999874211 00 001122333334444455556
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHH-------HHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCc
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE-------NVERWLKELRDHTDSNI-VIMLVGNKADLRHL 133 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~~~ 133 (217)
..++++|+||++.|.......+..+|++++|+|+.+.. ++ .....+..+.. .++ ++++++||+|+.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence 79999999999999999899999999999999998731 11 11222222222 266 46889999997621
Q ss_pred c--C----CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 027856 134 R--A----VSTEDATAFAEREN-----TFFMETSALESMNVEN 165 (217)
Q Consensus 134 ~--~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 165 (217)
. . ...+++..++...+ ++++++||.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 1 11345566666655 5699999999999853
No 254
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6.8e-16 Score=123.62 Aligned_cols=168 Identities=23% Similarity=0.186 Sum_probs=111.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-h------h--hhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-Y------R--AITS 80 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~------~--~~~~ 80 (217)
.+..++|+++|.||+|||||+|.|......... +..|++.+.....++-..+++.|.||+|..+ - . ....
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 456799999999999999999999999887665 5556666666666655558999999999544 1 1 1223
Q ss_pred hhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcC------CCCcEEEEEeCCCCCCc-cCCCHHHHHHHH-HHc-C
Q 027856 81 AYYRGAVGALLVYDVTR--HVTFENVERWLKELRDHTD------SNIVIMLVGNKADLRHL-RAVSTEDATAFA-ERE-N 149 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~------~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~-~~~-~ 149 (217)
..+..+|++++|+|+.. -++-..+...+........ ...+++++.||.|+... .+.......... ... .
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV 423 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence 45678999999999943 3322222333333322221 34789999999999763 222221111111 111 1
Q ss_pred Cc-EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 150 TF-FMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 150 ~~-~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
.+ ..++|++++++++++.+.+.+.+....
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 23 566999999999999988887666443
No 255
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=3.6e-15 Score=119.02 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=118.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcC---------------CCCCcccceeEeEEEEEEE---CCeEEEEEEEeCC
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEF---------------SLESKSTIGVEFATRSIRC---DDKIVKAQIWDTA 70 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~ 70 (217)
+..+.-+..++.+-..|||||..|++...- ..+....+++--....+.+ ++..+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 345566889999999999999999987421 1111222333333333333 5688999999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH-HHHHHHcC
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA-TAFAEREN 149 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~ 149 (217)
|+..|..-....+..|.+.++|+|++..-.-+.+.+.|..+.. +.-++.|+||+|++..+ .+.. .+..+-.|
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad---pervk~eIe~~iG 157 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD---PERVKQEIEDIIG 157 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---HHHHHHHHHHHhC
Confidence 9998887666777889999999999998777777787777765 67799999999997632 3333 33333445
Q ss_pred Cc---EEEEecCCCCCHHHHHHHHHHHHH
Q 027856 150 TF---FMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 150 ~~---~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
++ .+.+||++|.|+.++++.|++.+.
T Consensus 158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 158 IDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred CCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 44 899999999999999999987654
No 256
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=9.9e-16 Score=114.76 Aligned_cols=164 Identities=19% Similarity=0.222 Sum_probs=110.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEE-EECCeEEEEEEEeCCCh-------hhhhhhhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI-RCDDKIVKAQIWDTAGQ-------ERYRAITSA 81 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~-------~~~~~~~~~ 81 (217)
...+++|+++|.+|+|||||||+|+++...+...-..+.+...... .+++ -.+.|||+||- .+++.+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 4567999999999999999999999776655443333333333322 2344 47899999993 347778888
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc-------CCCHHHHHHHHH--------
Q 027856 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR-------AVSTEDATAFAE-------- 146 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~-------- 146 (217)
++...|.+++++++.++.---+ .+++..+.... -+.++++++|..|....- ......++++.+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998863222 33444443333 258999999999985431 011111222211
Q ss_pred Hc--CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856 147 RE--NTFFMETSALESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 147 ~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 177 (217)
.. --+++.++...+.|++.+...++..+...
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 11 23477788899999999999999887733
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.65 E-value=4e-15 Score=122.29 Aligned_cols=162 Identities=19% Similarity=0.151 Sum_probs=103.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC---CCCcc--cceeEeEEE-------------EEEECC------------
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS---LESKS--TIGVEFATR-------------SIRCDD------------ 59 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~---~~~~~--~~~~~~~~~-------------~~~~~~------------ 59 (217)
.+..++|+++|+-..|||||+.+|++.... .+... |....+... +.....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 466799999999999999999999975321 11111 111111100 000000
Q ss_pred ----eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856 60 ----KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH-VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134 (217)
Q Consensus 60 ----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 134 (217)
....+.|+|+||++.|.......+..+|++++|+|+..+ ...+..+.+ ..+... .-.++++|+||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc--CCCcEEEEEecccccCHH
Confidence 023689999999999988877888899999999999874 222222222 222222 134688999999987522
Q ss_pred CC--CHHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 135 AV--STEDATAFAER---ENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 135 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
.. ..+++.++... .+.+++++||.+|.|++.+++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 11 12233333322 356799999999999999888887544
No 258
>PRK09866 hypothetical protein; Provisional
Probab=99.63 E-value=3e-14 Score=118.67 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=73.5
Q ss_pred EEEEEeCCChhh-----hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856 63 KAQIWDTAGQER-----YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 137 (217)
Q Consensus 63 ~~~l~Dt~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~ 137 (217)
++.|+||||... +.......+..+|+++||+|+....+..+ ....+.+... +...|+++|+||+|..+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 678999999532 22334457899999999999987544333 2344444433 1235999999999986433323
Q ss_pred HHHHHHHHH----Hc---CCcEEEEecCCCCCHHHHHHHHHH
Q 027856 138 TEDATAFAE----RE---NTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 138 ~~~~~~~~~----~~---~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
.+....+.. .. ...+|++||+.|.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 444444432 11 235999999999999999999886
No 259
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.62 E-value=2.4e-14 Score=115.94 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC---------------------D-DKIVKAQIWDTAG 71 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G 71 (217)
++|+++|.||+|||||+++|++........+..+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999998765432233333333333221 1 1236789999999
Q ss_pred h----hhhhhhhhh---hhcCCcEEEEEEECC
Q 027856 72 Q----ERYRAITSA---YYRGAVGALLVYDVT 96 (217)
Q Consensus 72 ~----~~~~~~~~~---~~~~~d~ii~v~d~~ 96 (217)
. .....+... .++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 222233333 388999999999996
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.62 E-value=2.6e-14 Score=123.95 Aligned_cols=118 Identities=16% Similarity=0.134 Sum_probs=83.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC-----C-------------CCcccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS-----L-------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 70 (217)
..+...+|+|+|++++|||||+++|+...-. . +....++.+.....+.+++ .++.++|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP 81 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP 81 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence 3456789999999999999999999753110 0 0122333444444444444 689999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
|+..+...+...+..+|++++|+|+.+....+.. ..+..+.. .++|+++++||+|+..
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9988887788889999999999999876543332 33333333 3789999999999863
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=2.8e-14 Score=123.72 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=84.2
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-----CC-------------cccceeEeEEEEEEECCeEEEEEEEeC
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-----ES-------------KSTIGVEFATRSIRCDDKIVKAQIWDT 69 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt 69 (217)
...+...+|+|+|++++|||||+++|+...-.. .. ...++.+.....+.+. ...+.+|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDT 82 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDT 82 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEEC
Confidence 445667899999999999999999997522110 00 1122333334444444 468999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
||+..+...+...+..+|++++|+|+.+....+.. .++..+.. .++|+++++||+|+..
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 99988877788889999999999999886554433 23333333 3789999999999875
No 262
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.61 E-value=3e-15 Score=107.70 Aligned_cols=116 Identities=26% Similarity=0.334 Sum_probs=72.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhhh---hhcCCcE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERYRAITSA---YYRGAVG 88 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~ 88 (217)
...|+++|+.|+|||+|...|..+......... . ......+ ......+.++|+||+.+.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e---~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E---NNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-S---EEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c---CCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 357899999999999999999998554333222 1 1112222 223347899999999988764433 4788999
Q ss_pred EEEEEECCC-hhhHHHH-HHHHHHHHhhc--CCCCcEEEEEeCCCCCC
Q 027856 89 ALLVYDVTR-HVTFENV-ERWLKELRDHT--DSNIVIMLVGNKADLRH 132 (217)
Q Consensus 89 ii~v~d~~~-~~s~~~~-~~~~~~l~~~~--~~~~p~ivv~nK~D~~~ 132 (217)
||||+|.+. ...+.++ +.++..+.... ...+|++|++||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999874 3344444 44555544333 35799999999999855
No 263
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.58 E-value=9e-14 Score=106.37 Aligned_cols=188 Identities=21% Similarity=0.358 Sum_probs=135.1
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE--CCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC--DDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
..+....=+|+|+|..|+||||||.+|.+.. .+.+..+..+....++- .+....+.+|-..|+--...+....+.
T Consensus 46 ~sklpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ 122 (473)
T KOG3905|consen 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP 122 (473)
T ss_pred cccCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc
Confidence 3444556789999999999999999999876 33344555555555433 233468889999997666565555544
Q ss_pred CC----cEEEEEEECCChhhH-HHHHHHHHHHHhhcCC------------------------------------------
Q 027856 85 GA----VGALLVYDVTRHVTF-ENVERWLKELRDHTDS------------------------------------------ 117 (217)
Q Consensus 85 ~~----d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~------------------------------------------ 117 (217)
.. -.+|++.|.+++.++ +.+..|...+.+..+.
T Consensus 123 ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~ 202 (473)
T KOG3905|consen 123 ATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGS 202 (473)
T ss_pred ccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccC
Confidence 33 368889999999654 4456777766533321
Q ss_pred -------------------CCcEEEEEeCCCCCC----ccCC-------CHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 118 -------------------NIVIMLVGNKADLRH----LRAV-------STEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 118 -------------------~~p~ivv~nK~D~~~----~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
++|++||++|+|... +.+. ....++.||.++|+.+|.+|++...||+-++
T Consensus 203 ~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidlly 282 (473)
T KOG3905|consen 203 SADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLY 282 (473)
T ss_pred ccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHH
Confidence 789999999999832 1111 1233577888899999999999999999999
Q ss_pred HHHHHHHHHH-HhhhhhccCCCCCCCCCCce
Q 027856 168 TEVLTQIYRV-VSRKALEIGDDPAALPKGQT 197 (217)
Q Consensus 168 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 197 (217)
..|++..+.. +...++.++++...+|-|=.
T Consensus 283 KYivhr~yG~~fttpAlVVEkdaVfIPAGWD 313 (473)
T KOG3905|consen 283 KYIVHRSYGFPFTTPALVVEKDAVFIPAGWD 313 (473)
T ss_pred HHHHHHhcCcccCCcceEeecceeEeccCCC
Confidence 9999999887 55566777777777766543
No 264
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.58 E-value=4.8e-14 Score=118.06 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=82.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC--cCCC---C---------------CcccceeEeEEEEEEECCeEEEEEEEeC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN--EFSL---E---------------SKSTIGVEFATRSIRCDDKIVKAQIWDT 69 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 69 (217)
.....+|+|+|++++|||||+++|+.. .... . .....+++.......++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 355789999999999999999998632 1110 0 0011233344444445555689999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
||+..+.......+..+|++++|+|+++.... ....++..+.. .+.|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 99988887677788999999999999875321 12344444333 3789999999999854
No 265
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.7e-13 Score=110.14 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=113.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCC--CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLE--SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.++=|-|+|+-..|||||+..|-+...... ..-|..+.-+...++ +| -.++|.||||+..|..++..-..-+|++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccEE
Confidence 467788999999999999999998877543 333444444444444 44 5889999999999999999989999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-------HcC--CcEEEEecCCC
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-------REN--TFFMETSALES 160 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~Sa~~~ 160 (217)
++|+.++|.--. ...+.+......+.|+++++||+|.++ .+.+...+-.. .+| +.++++||++|
T Consensus 229 VLVVAadDGVmp----QT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 229 VLVVAADDGVMP----QTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEccCCccH----hHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 999999986432 233344444446899999999999764 33333332222 243 45999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQI 174 (217)
Q Consensus 161 ~~i~~~~~~i~~~~ 174 (217)
+|++.+-+.++-..
T Consensus 302 ~nl~~L~eaill~A 315 (683)
T KOG1145|consen 302 ENLDLLEEAILLLA 315 (683)
T ss_pred CChHHHHHHHHHHH
Confidence 99999888877543
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.56 E-value=1.2e-13 Score=119.75 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=82.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCc--CCC---C-------------CcccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNE--FSL---E-------------SKSTIGVEFATRSIRCDDKIVKAQIWDTA 70 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 70 (217)
..+...+|+|+|++++|||||+++|+... ... . .....+.+.....+.+. ...+.++|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCC
Confidence 45567899999999999999999997421 100 0 11223333334444444 4689999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
|+..+.......+..+|++++|+|+......+... .+..+.. .++|+++++||+|+..
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 98877766777788999999999998765444333 3333333 3789999999999875
No 267
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.8e-14 Score=98.06 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=110.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.=|++++|-.|+|||||++-|-........ ||.. .....+.+.+ .+++-+|..|+...+..|..++..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccC-CCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 348999999999999999988877654322 4432 2233344444 6899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH------H--------cC---CcEEE
Q 027856 93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE------R--------EN---TFFME 154 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~--------~~---~~~~~ 154 (217)
+|+.+.+-+.+...-++.+.... -...|+++.+||+|.... ++.++.....- . .+ ...|.
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 99999988877765555544333 248999999999998762 34444332211 0 11 23788
Q ss_pred EecCCCCCHHHHHHHHHH
Q 027856 155 TSALESMNVENAFTEVLT 172 (217)
Q Consensus 155 ~Sa~~~~~i~~~~~~i~~ 172 (217)
||...+.+..+.|.|+..
T Consensus 173 csi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEccCccceeeeehhh
Confidence 888888887777777654
No 268
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=7.3e-14 Score=112.28 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=124.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh----------hhhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE----------RYRAITS 80 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 80 (217)
.....++++|.|++|||||++.++.......+.++++...+...+.+.. ..++++||||.- +..++ .
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsI-T 242 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQII-T 242 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHH-H
Confidence 4567899999999999999999998887776666665555555544333 688999999921 11111 1
Q ss_pred hhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHH---HHHHHHHcCCcEEEE
Q 027856 81 AYYRGAVGALLVYDVTR--HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTED---ATAFAERENTFFMET 155 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~ 155 (217)
...+---+++|+.|++. ..|...--.++..+...+. +.|+|+|+||+|+.....++.+. +......-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 12222346899999885 5677766678888877764 88999999999997765555433 333444455899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhhhhhcc
Q 027856 156 SALESMNVENAFTEVLTQIYRVVSRKALEI 185 (217)
Q Consensus 156 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~ 185 (217)
|..+.+|+-++-...++.++.++-+..+.-
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klks 351 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAARVEQKLKS 351 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999998877664444
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.6e-13 Score=108.41 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=103.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC--CC---------------------------CCcccceeEeEEEEEEECCeE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF--SL---------------------------ESKSTIGVEFATRSIRCDDKI 61 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++++++|+..+|||||+-+|+-..- +. ......|.+.......+.-..
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 4578999999999999999999885311 00 001123445555555555555
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh---H--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---F--ENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 136 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~--~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 136 (217)
+.++++|+||++.|...+-.-..++|+.|+|+|+++.+. + +....-...|....+ -..+||++||+|..+.++-
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCHH
Confidence 789999999999999988888999999999999988631 1 000111111222221 3457889999999875554
Q ss_pred CHHHHHHH----HHHc-----CCcEEEEecCCCCCHHH
Q 027856 137 STEDATAF----AERE-----NTFFMETSALESMNVEN 165 (217)
Q Consensus 137 ~~~~~~~~----~~~~-----~~~~~~~Sa~~~~~i~~ 165 (217)
.++++... .+.. ++.|+++|+..|.|+.+
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 44444322 2232 35699999999999754
No 270
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=2.5e-13 Score=105.25 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=74.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-------hhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI-------TSAY 82 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~ 82 (217)
...++|+++|.+|+||||++|+|++........ ...+..........++ ..+.+|||||....... ...+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 567899999999999999999999987543221 1112222222233344 68999999995432111 1111
Q ss_pred h--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCccCCC
Q 027856 83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDS--NIVIMLVGNKADLRHLRAVS 137 (217)
Q Consensus 83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~~ 137 (217)
+ ...|+++||..++.....+.-...++.+...++. -.++++++|+.|....+..+
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 1 2689999996654321111112344444444432 25689999999976433333
No 271
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.53 E-value=2e-13 Score=102.20 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc--ccceeEeEEEEEEECCeEEEEEEEeCCChh-------hhhh-h---hh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK--STIGVEFATRSIRCDDKIVKAQIWDTAGQE-------RYRA-I---TS 80 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~-~---~~ 80 (217)
++|+|+|.+|+||||++|.+++........ ...+.........+++ ..+.++||||.- .... + ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999988754432 1222233333345566 578999999921 1111 1 12
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCccCCC-------HHHHHHHHHHcCCc
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN--IVIMLVGNKADLRHLRAVS-------TEDATAFAERENTF 151 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 151 (217)
....+.|++++|+... +-+-.+ ...+..+...++.. ..++||+|..|......+. ...+.++....+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2346789999999998 333222 23344444444322 4588888988875533311 12234455556667
Q ss_pred EEEEecC------CCCCHHHHHHHHHHHHHHH
Q 027856 152 FMETSAL------ESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 152 ~~~~Sa~------~~~~i~~~~~~i~~~~~~~ 177 (217)
|..++.. ....+.++|+.|-+.+.++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 8877776 2234666666666555544
No 272
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.53 E-value=3.2e-13 Score=102.96 Aligned_cols=122 Identities=19% Similarity=0.209 Sum_probs=74.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-cceeEeEEEEEEECCeEEEEEEEeCCChhhhh------h-h--
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDKIVKAQIWDTAGQERYR------A-I-- 78 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~-~-- 78 (217)
.....++|+|+|.+|+|||||+|+|++......... ..+..........++ ..+.+|||||..... . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 456789999999999999999999999875433211 222222222333344 578999999943221 0 0
Q ss_pred -hhhhh--cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCc
Q 027856 79 -TSAYY--RGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSN--IVIMLVGNKADLRHL 133 (217)
Q Consensus 79 -~~~~~--~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~ 133 (217)
...++ ...|++++|..++... ...+ ...+..+....+.. .++++|.||+|....
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 11223 2578888887665432 2221 23444444443322 568999999998643
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=6e-13 Score=115.49 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=75.2
Q ss_pred EcCCCCCHHHHHHHHhhCcCCC------------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh
Q 027856 19 IGDSGVGKSNLLSRFTRNEFSL------------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 19 ~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
+|++++|||||+++|+...-.. ......+.......+.+.+ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 6999999999999996532110 0011223333333444444 7899999999988877788
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
..+..+|++++|+|++..........| ..+.. .+.|+++|+||+|..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999887655443333 33332 378999999999985
No 274
>PTZ00258 GTP-binding protein; Provisional
Probab=99.52 E-value=4.9e-13 Score=107.34 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=62.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeE---------------EEEEEEeCCChhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI---------------VKAQIWDTAGQER 74 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~ 74 (217)
....++|+++|.||+|||||+|+|++........+..+.+.....+.+.+.. .++.++||||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 4567899999999999999999999887655444555556656666554332 3589999999431
Q ss_pred -------hhhhhhhhhcCCcEEEEEEECC
Q 027856 75 -------YRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 75 -------~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
........++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2222334568899999999984
No 275
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.52 E-value=4.6e-13 Score=110.00 Aligned_cols=184 Identities=21% Similarity=0.392 Sum_probs=126.7
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD--DKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
.....-.|+|+|..++||||||.+|.+.. .+.++.+.+|....+.-+ +....+.+|-..|...+..+....+...
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence 33445689999999999999999987654 344566666666655332 2235789999998777777766655432
Q ss_pred ----cEEEEEEECCChhhH-HHHHHHHHHHHhhcC---------------------------------------------
Q 027856 87 ----VGALLVYDVTRHVTF-ENVERWLKELRDHTD--------------------------------------------- 116 (217)
Q Consensus 87 ----d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~--------------------------------------------- 116 (217)
-.+++|+|.+.|..+ +.+..|+..++....
T Consensus 98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 368899999998754 234445444431110
Q ss_pred -----------------CCCcEEEEEeCCCCCCc----cC-------CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 117 -----------------SNIVIMLVGNKADLRHL----RA-------VSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 117 -----------------~~~p~ivv~nK~D~~~~----~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
-++|++||++|+|.... .. ....-++.+|..+|+.+|++|++...+++.++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 05899999999997421 11 112335677788999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhhccCCCCCCCCCC
Q 027856 169 EVLTQIYRVVSR-KALEIGDDPAALPKG 195 (217)
Q Consensus 169 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~ 195 (217)
.|.+.++..-.. ....+..+.-.+|.|
T Consensus 258 yi~h~l~~~~f~~~~~vv~~d~ifIP~G 285 (472)
T PF05783_consen 258 YILHRLYGFPFKTPAQVVERDAIFIPAG 285 (472)
T ss_pred HHHHHhccCCCCCCceeecccccccCCC
Confidence 999988876443 344455566666655
No 276
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.51 E-value=1.5e-13 Score=90.81 Aligned_cols=136 Identities=22% Similarity=0.227 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----hhhhhhhhhhhhcCCcEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----QERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~ii 90 (217)
||+++|..|+|||||.+.|-|... .+..|...+ +++. -.+|||| +..+.+........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999988763 232333221 2221 2689999 3444444555667899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~ 169 (217)
+|-++++++|.- -..+... ...|+|-|++|.|+.+ ....+..+.+..+-|.. +|++|+.++.|++++++.
T Consensus 70 ~v~~and~~s~f-----~p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRF-----PPGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccC-----Ccccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 999999986521 1111111 1456889999999985 23456667788888865 999999999999999988
Q ss_pred HHH
Q 027856 170 VLT 172 (217)
Q Consensus 170 i~~ 172 (217)
+..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 764
No 277
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=1.1e-13 Score=120.30 Aligned_cols=118 Identities=16% Similarity=0.162 Sum_probs=82.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC---------------cCCCC---CcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN---------------EFSLE---SKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+...+|+++|+.++|||||+++|+.. .+... ...|.........+.+++..+.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 355789999999999999999999753 11110 112332222233334566778999999999
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
+..+.......+..+|++++|+|+......+....|.. +.. .+.|+++++||+|..
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH---cCCCEEEEEEChhcc
Confidence 98888778888999999999999987543332222222 222 367888999999985
No 278
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.50 E-value=5.5e-13 Score=103.14 Aligned_cols=151 Identities=24% Similarity=0.219 Sum_probs=107.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC------------C-------------------CCcccceeEeEEEEEEEC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS------------L-------------------ESKSTIGVEFATRSIRCD 58 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~ 58 (217)
....+|.+-+|+-.-||||||-||+..... . +.....|++..+.+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 356789999999999999999999974210 0 001134555666665555
Q ss_pred CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856 59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 137 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~ 137 (217)
-...++.+-||||++.|...+..-...+|+.|+++|+...-.-+.- +.++..+.. -..+++++||+|+.+-++..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhC----CcEEEEEEeeecccccCHHH
Confidence 5557999999999999999888888899999999999654321111 234444443 35688999999998865544
Q ss_pred HHHH----HHHHHHcCCc---EEEEecCCCCCHH
Q 027856 138 TEDA----TAFAERENTF---FMETSALESMNVE 164 (217)
Q Consensus 138 ~~~~----~~~~~~~~~~---~~~~Sa~~~~~i~ 164 (217)
.+++ ..|+..+++. ++++||..|.|+-
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 4444 4556666654 9999999999874
No 279
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.3e-12 Score=94.30 Aligned_cols=114 Identities=22% Similarity=0.288 Sum_probs=78.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc---CCcEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR---GAVGA 89 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~i 89 (217)
.-.|+++|..+||||+|.-.|..+.....+. .+......+.+... .++++|.||+.+.+.....+++ .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 3579999999999999999988774433221 12222333333332 4799999999999877766666 78999
Q ss_pred EEEEECCC-hhhHHHH-HHHHHHHHhh--cCCCCcEEEEEeCCCCC
Q 027856 90 LLVYDVTR-HVTFENV-ERWLKELRDH--TDSNIVIMLVGNKADLR 131 (217)
Q Consensus 90 i~v~d~~~-~~s~~~~-~~~~~~l~~~--~~~~~p~ivv~nK~D~~ 131 (217)
+||+|... .....++ +.++..+... ....+|+++++||.|+.
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99999653 2233333 4455555444 34689999999999985
No 280
>PRK13768 GTPase; Provisional
Probab=99.46 E-value=1.2e-12 Score=100.50 Aligned_cols=109 Identities=17% Similarity=0.082 Sum_probs=69.5
Q ss_pred EEEEEeCCChhhhh---hhhhhhhc---C--CcEEEEEEECCChhhHHHHH--HHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 63 KAQIWDTAGQERYR---AITSAYYR---G--AVGALLVYDVTRHVTFENVE--RWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~---~~~~~~~~---~--~d~ii~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
.+.+||+||+.+.. ..+..+++ . .+++++++|+.......+.. .|+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 68999999976532 23322222 2 89999999997654433322 222222211 13799999999999865
Q ss_pred ccCCCHHHHHH----------------------------HHHHcC--CcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 133 LRAVSTEDATA----------------------------FAEREN--TFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 133 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
..+. ++... ..+..+ ..++++|++++.|+++++++|.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 3221 11111 112223 4689999999999999999998765
No 281
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.43 E-value=4.1e-12 Score=110.97 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=80.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-----------C-----cccceeEeE--EEEEEECCeEEEEEEEeCCC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------S-----KSTIGVEFA--TRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----------~-----~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+...+|+++|+.++|||||+.+|+...-... + ...+++... ...+.+++..+.+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 35567899999999999999999986321100 0 001111111 22223355568899999999
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
+..+.......+..+|++++|+|+......+....|... ... +.|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHc---CCCeEEEEECchhh
Confidence 998888888889999999999999876443332333332 222 56789999999975
No 282
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.43 E-value=6.1e-12 Score=93.07 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=64.7
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 141 (217)
....++++.|..-..... . .-+|.++.|+|+.+..+... .+...+. ..=++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 466778888832111111 1 12578999999987665321 1112221 11279999999975323334444
Q ss_pred HHHHHH--cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 142 TAFAER--ENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 142 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
.+..+. .+.+++++||++|+|++++|++|.+++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445444 457899999999999999999998754
No 283
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.43 E-value=8.1e-12 Score=99.32 Aligned_cols=83 Identities=19% Similarity=0.162 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeE---------------EEEEEEeCCChhh----
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI---------------VKAQIWDTAGQER---- 74 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~---- 74 (217)
++|+++|.||+|||||+|+|++........+..+.+.....+.+.+.. ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999988543333555555555555554421 2589999999432
Q ss_pred ---hhhhhhhhhcCCcEEEEEEECC
Q 027856 75 ---YRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 75 ---~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122233467999999999984
No 284
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.42 E-value=2.1e-12 Score=93.26 Aligned_cols=63 Identities=25% Similarity=0.258 Sum_probs=45.8
Q ss_pred EEEEEeCCChh----hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027856 63 KAQIWDTAGQE----RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128 (217)
Q Consensus 63 ~~~l~Dt~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 128 (217)
.+.|+||||.. .....+..++..+|++++|.+++...+-.....+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 57899999953 23356777889999999999999876655555566555544 44488999984
No 285
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.42 E-value=1.9e-12 Score=114.44 Aligned_cols=119 Identities=21% Similarity=0.191 Sum_probs=82.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC--C--------------CCcccceeEeEEEEEEE--------------C
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS--L--------------ESKSTIGVEFATRSIRC--------------D 58 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~ 58 (217)
..+...+|+|+|+.++|||||+++|+...-. . +.....++......+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3566789999999999999999999864311 0 00011122211222222 2
Q ss_pred CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
+..+.++++||||+..|.......+..+|++|+|+|+...........|.... . .++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~-~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH-H---CCCCEEEEEECCccc
Confidence 23578899999999999888888899999999999998875444333333332 2 378999999999986
No 286
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.6e-12 Score=99.46 Aligned_cols=168 Identities=21% Similarity=0.204 Sum_probs=108.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC---CCCCccccee---------------E---eEEEEEEEC------CeEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF---SLESKSTIGV---------------E---FATRSIRCD------DKIVK 63 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~---------------~---~~~~~~~~~------~~~~~ 63 (217)
+..++|.++|+-..|||||.++|.+--. +.+....+++ . .+...-.+. .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 6789999999999999999999998311 0000000000 0 000000000 11247
Q ss_pred EEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CC
Q 027856 64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VS 137 (217)
Q Consensus 64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~ 137 (217)
+.|+|.||++-+-....+-..-.|+.++|++++.+ ++-+++ ..+... .-..++++=||+|+...+. .+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl----~AleIi--gik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL----MALEII--GIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH----HHHhhh--ccceEEEEecccceecHHHHHHH
Confidence 88999999988877776666667999999999864 343332 222222 1356888999999976432 34
Q ss_pred HHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhhccCCC
Q 027856 138 TEDATAFAER---ENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 188 (217)
Q Consensus 138 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~ 188 (217)
++++++|.+. .+++++++||..+.|++.+++.|.+++ ...+.+..+.
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I----ptP~rd~~~~ 211 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI----PTPERDLDKP 211 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC----CCCccCCCCC
Confidence 5667777765 467899999999999998887766554 4444444443
No 287
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.41 E-value=3.3e-11 Score=107.11 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=97.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe----------------EEEEEEEeCCChh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK----------------IVKAQIWDTAGQE 73 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~Dt~G~~ 73 (217)
.+..+--+++++ ||||+.++.+......-.-.++-+.-...+..+.. .-.+.||||||++
T Consensus 462 ~~~~~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 462 THNFIANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cCcceeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 344444455544 99999999998875432222222222222222210 0137999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--------------
Q 027856 74 RYRAITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-------------- 136 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-------------- 136 (217)
.+..+....+..+|++++|+|+++ +.+.+.+ ..+.. .+.|+++|+||+|+...-..
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~ 610 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQD 610 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhH
Confidence 998888778889999999999987 3443333 22322 26899999999998531110
Q ss_pred --CHHHHH----HH---HHH---------------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 137 --STEDAT----AF---AER---------------ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 137 --~~~~~~----~~---~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
...+.. .+ ... ..++++++||++|+|+++++.++.....
T Consensus 611 ~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 611 QHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 011110 00 011 1356999999999999999987765443
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.39 E-value=9.2e-13 Score=99.90 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=59.1
Q ss_pred EEEEEeCCChhhhhhhhhhhh--------cCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856 63 KAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 133 (217)
.+.++|||||.++...+.... ...-++++++|.....+... +..++..+.....-+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999987765554433 34457888999764433222 233333322222238999999999999762
Q ss_pred c---CC----C------------HHHHHHHHHH---cC-C-cEEEEecCCCCCHHHHHHHHHHHH
Q 027856 134 R---AV----S------------TEDATAFAER---EN-T-FFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 134 ~---~~----~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
. .. . ....+++++- .+ . .++++|+.+++++.+++..|-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 00 0 0011112221 23 3 599999999999999998887654
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=3.4e-12 Score=112.65 Aligned_cols=118 Identities=21% Similarity=0.225 Sum_probs=80.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----------------CCcccceeEeEEEEEEEC--------CeEEEEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----------------ESKSTIGVEFATRSIRCD--------DKIVKAQ 65 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 65 (217)
.+...+|+++|+.++|||||+++|+...-.. +.....++......+.+. +..+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 3556799999999999999999998732110 000111122112222222 2257899
Q ss_pred EEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
|+||||+..+.......++.+|++++|+|+...-..+.. ..+..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence 999999998888888889999999999999886544432 33333333 368999999999986
No 290
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.39 E-value=1.4e-11 Score=101.02 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=122.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....+++.|+|+.++|||.|++.|+++.+......+....+....+...+....+.+-|.+-. ....+...- ..+|+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3446799999999999999999999999988877677777777777777788778888888764 222222222 77999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc-CCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR-AVSTEDATAFAERENTF-FMETSALESMNVENA 166 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~ 166 (217)
++++||.+++.+++.+...++..... ...|+++|++|+|+.+.. +..... .++++.++++ .+.+|...... .++
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~l 574 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NEL 574 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chH
Confidence 99999999999998876655554443 489999999999996643 233333 7889999877 77777775333 788
Q ss_pred HHHHHHHHH
Q 027856 167 FTEVLTQIY 175 (217)
Q Consensus 167 ~~~i~~~~~ 175 (217)
|..|...+.
T Consensus 575 f~kL~~~A~ 583 (625)
T KOG1707|consen 575 FIKLATMAQ 583 (625)
T ss_pred HHHHHHhhh
Confidence 888876654
No 291
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.38 E-value=2e-11 Score=97.30 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=90.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC----cCC--------------CCCccc-ceeEeEE-----EEEE-ECCeEEEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN----EFS--------------LESKST-IGVEFAT-----RSIR-CDDKIVKA 64 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~----~~~--------------~~~~~~-~~~~~~~-----~~~~-~~~~~~~~ 64 (217)
....+.|+|+|+.++|||||||+|.+. ... .....| ++++... ..+. .++....+
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 345789999999999999999999998 322 111111 1222211 1222 24555789
Q ss_pred EEEeCCChhh--------hhh---------------------hhhhhhc-CCcEEEEEE-ECC----ChhhHHHH-HHHH
Q 027856 65 QIWDTAGQER--------YRA---------------------ITSAYYR-GAVGALLVY-DVT----RHVTFENV-ERWL 108 (217)
Q Consensus 65 ~l~Dt~G~~~--------~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~~~~-~~~~ 108 (217)
.++||+|... ... =+...+. ++++.++|. |.+ .++.+... +.++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 9999999211 111 0223344 889988888 764 11222222 5677
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856 109 KELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 109 ~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
.++... ++|+++++|+.|..... ..+...++...++++++.+|+..
T Consensus 174 ~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 174 EELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred HHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence 887775 89999999999943211 34444566666788877777664
No 292
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.38 E-value=3.4e-11 Score=95.38 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=83.3
Q ss_pred EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCC
Q 027856 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKELRD-HTDSNIVIMLVGNKAD 129 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D 129 (217)
.+.+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..+.. ..-.+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 36889999999999999999999999999999999874 223333333333322 2225799999999999
Q ss_pred CCCcc----------------CCCHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 130 LRHLR----------------AVSTEDATAFAER----------ENTFFMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 130 ~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
+..++ .-..+.+..+... ..+....++|.+-.++..+|+.+.+.+....
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 73211 2234455444332 1234677889999999999999988877654
No 293
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.37 E-value=2e-12 Score=96.97 Aligned_cols=171 Identities=17% Similarity=0.199 Sum_probs=99.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-cceeEeEEEEEE------E------------------------
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIR------C------------------------ 57 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~------~------------------------ 57 (217)
-...+.-|+|+|..|+|||||++||.........++ .+..+.....++ +
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 345678899999999999999999987533221111 000111011100 0
Q ss_pred -----------------CCeEEEEEEEeCCChhhh------hhh-hhhhh-cCCcEEEEEEECCC---hhhHHHHHHHHH
Q 027856 58 -----------------DDKIVKAQIWDTAGQERY------RAI-TSAYY-RGAVGALLVYDVTR---HVTFENVERWLK 109 (217)
Q Consensus 58 -----------------~~~~~~~~l~Dt~G~~~~------~~~-~~~~~-~~~d~ii~v~d~~~---~~s~~~~~~~~~ 109 (217)
....++..++||||+.+. .++ .+.+. ...-+++|++|... +.+| +.+.+.
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlY 172 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLY 172 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHH
Confidence 011136889999996432 111 11111 23356788888654 3333 234444
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCCccC----CC----HHHHHH-------------HHH-----HcCCcEEEEecCCCCCH
Q 027856 110 ELRDHTDSNIVIMLVGNKADLRHLRA----VS----TEDATA-------------FAE-----RENTFFMETSALESMNV 163 (217)
Q Consensus 110 ~l~~~~~~~~p~ivv~nK~D~~~~~~----~~----~~~~~~-------------~~~-----~~~~~~~~~Sa~~~~~i 163 (217)
..........|+|++.||.|+.+... +. .+++.. +.. ..++..+-+|+.+|.|+
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 44334445899999999999976321 00 111111 000 02456899999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027856 164 ENAFTEVLTQIYRVVSRK 181 (217)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (217)
+++|..+...+-+....+
T Consensus 253 ddf~~av~~~vdEy~~~y 270 (366)
T KOG1532|consen 253 DDFFTAVDESVDEYEEEY 270 (366)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999988777665554
No 294
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.37 E-value=3e-11 Score=91.22 Aligned_cols=140 Identities=18% Similarity=0.154 Sum_probs=84.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
......|+++|.+|+|||||++.+.+...........+. ..+ .......+.++||||.- .. .....+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEE
Confidence 455678999999999999999999875322111111121 111 11234578999999853 22 22345789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCccCC---CHHHHHH-HHHH--cCCcEEEEecCCCC
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVI-MLVGNKADLRHLRAV---STEDATA-FAER--ENTFFMETSALESM 161 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~~~~~~~---~~~~~~~-~~~~--~~~~~~~~Sa~~~~ 161 (217)
++++|++....... ..++..+... +.|. ++|+||+|+.+.... ...++.+ +... .+.+++.+||++.-
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999986543322 2334444332 5674 459999998642211 0112222 2222 34679999999864
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=2.9e-12 Score=97.81 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=77.3
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc
Q 027856 73 ERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF 151 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (217)
+++..+...++.++|++++|+|+.++. +++.+..|+..+.. .++|+++|+||+|+.+...+..+.+..+ ...+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 567777888999999999999999887 89999999987654 4799999999999975443333334433 457888
Q ss_pred EEEEecCCCCCHHHHHHHHH
Q 027856 152 FMETSALESMNVENAFTEVL 171 (217)
Q Consensus 152 ~~~~Sa~~~~~i~~~~~~i~ 171 (217)
++++||++|.|++++|+.+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred EEEEecCCchhHHHHHhhhc
Confidence 99999999999999998876
No 296
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.37 E-value=1.7e-11 Score=98.20 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=109.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC--------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA 77 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 77 (217)
..-+|+++-+-..|||||+..|+.+.-.. ......|++.-....-+..+.+.++++||||+..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34689999999999999999999864211 1122345555555555556668999999999999998
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHH-------HcC
Q 027856 78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAE-------REN 149 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~ 149 (217)
-.+..+.-+|++++++|+.+..-.+. +- .+......+.+.|+|+||+|....+.. -.++...+.. .++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT-rF---VlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT-RF---VLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch-hh---hHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 88999999999999999987543221 11 122222236777899999998764311 1222222222 356
Q ss_pred CcEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027856 150 TFFMETSALESM----------NVENAFTEVLTQIY 175 (217)
Q Consensus 150 ~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 175 (217)
+++++.|+..|. ++.-+|+.|++++.
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 789999988764 46677777776654
No 297
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.37 E-value=4.7e-12 Score=94.53 Aligned_cols=151 Identities=16% Similarity=0.134 Sum_probs=84.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC------------CCcc----cceeEeEEEEEEECC-------------
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL------------ESKS----TIGVEFATRSIRCDD------------- 59 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~------------~~~~----~~~~~~~~~~~~~~~------------- 59 (217)
+......|+++|+.|+|||||+++++...... .... ..+.. ...+ .++
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l-~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQI-NTGKECHLDAHMVAHA 94 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEE-cCCCcccCChHHHHHH
Confidence 44568899999999999999999988641110 0000 00000 0000 011
Q ss_pred ------eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856 60 ------KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 60 ------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 133 (217)
....+.+++|.|.-... ..+....+..+.|+|+.+..... .... .. ...|.++++||+|+.+.
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEA 163 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHcccc
Confidence 01355666666621000 01112234445666665443211 1111 11 14567999999999753
Q ss_pred cCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 134 RAVSTEDATAFAERE--NTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
.....++..+..+.. ..+++++||++|.|++++|+++.++
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 164 VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 322334444444443 3789999999999999999999874
No 298
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.37 E-value=7.1e-12 Score=99.70 Aligned_cols=163 Identities=12% Similarity=0.147 Sum_probs=81.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCccc--ceeEeEEEEEEECCeEEEEEEEeCCChhhhh-----hhhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKST--IGVEFATRSIRCDDKIVKAQIWDTAGQERYR-----AITSAYY 83 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~ 83 (217)
..++|+|+|.+|+|||||||+|.|-.-.. ...++ ..++.....+.... .-.+.+||.||.-... .+...-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46899999999999999999997743221 11111 11112222222221 1268999999942211 1222345
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC--C-----ccCCC----HHHHHHHHHH----c
Q 027856 84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR--H-----LRAVS----TEDATAFAER----E 148 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~--~-----~~~~~----~~~~~~~~~~----~ 148 (217)
...|.+|++.+- +-+-.++ .+...+... ++|+.+|-||+|.. + .+... .+++++.+.. .
T Consensus 113 ~~yD~fiii~s~--rf~~ndv-~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSE--RFTENDV-QLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESS--S--HHHH-HHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCC--CCchhhH-HHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 677988887553 3222222 233344433 89999999999961 1 11122 2233333332 2
Q ss_pred C---CcEEEEecCCC--CCHHHHHHHHHHHHHHHHhhh
Q 027856 149 N---TFFMETSALES--MNVENAFTEVLTQIYRVVSRK 181 (217)
Q Consensus 149 ~---~~~~~~Sa~~~--~~i~~~~~~i~~~~~~~~~~~ 181 (217)
+ ..+|.+|+.+- .++..+.+.+.+.+...+...
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence 3 34899998874 457888888888777665544
No 299
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.35 E-value=1.5e-11 Score=94.79 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=57.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeE---------------EEEEEEeCCChhh------
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI---------------VKAQIWDTAGQER------ 74 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~------ 74 (217)
|+++|.|++|||||+|+|++........+..+.+.....+.+.+.. ..+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999988754444555556656566554432 3589999999322
Q ss_pred -hhhhhhhhhcCCcEEEEEEECC
Q 027856 75 -YRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 75 -~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112233467899999999874
No 300
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.35 E-value=1.8e-11 Score=83.58 Aligned_cols=114 Identities=33% Similarity=0.377 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
++|+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777754443 3332 222334466788999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
++..+..+++.+ |...+......+.|.++++||.|+.+...+..++. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999988755 77777665556788999999999854333332222 235577888988874
No 301
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.35 E-value=5.5e-11 Score=88.27 Aligned_cols=155 Identities=25% Similarity=0.219 Sum_probs=111.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhhc
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYYR 84 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 84 (217)
..-+|+++|.|.+|||||+..++..+-........+.+..+..+.+++ ..+++.|.||..+-. ...-+..+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 367999999999999999999998776554446667778888888888 478999999943322 22334567
Q ss_pred CCcEEEEEEECCChhhHH-HHHHHHHHHHhhcC-----------------------------------------------
Q 027856 85 GAVGALLVYDVTRHVTFE-NVERWLKELRDHTD----------------------------------------------- 116 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~~~----------------------------------------------- 116 (217)
.+|.++.|.|++..+.-. .++.-++.+.....
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 899999999998755332 23333333321111
Q ss_pred ------------------CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 117 ------------------SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 117 ------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
...+++.|-||+| .++.++...+++..+ -+.+|+.-..|++.+++.|.+++.
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence 1356788888888 566888888888766 556677777889999999998765
No 302
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.34 E-value=1.9e-11 Score=96.49 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=66.0
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STE 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 139 (217)
+.+.|+||+|...-. ......+|.++++.+......+.... ..+.+ ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 688999999954222 22466799999997755554443322 21111 123799999998653211 112
Q ss_pred HHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 140 DATAFAER-------ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 140 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+....... +..+++.+||.++.|++++++.|.+++.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222221 2357999999999999999999998765
No 303
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.34 E-value=5.2e-11 Score=92.45 Aligned_cols=141 Identities=18% Similarity=0.261 Sum_probs=75.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC----------cccceeEeEEEEEEECCeEEEEEEEeCCChh--------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES----------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-------- 73 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------- 73 (217)
..++|+|+|.+|+|||||||.|++....... ..+..+......+.-++..+.+.++||||.-
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999997653331 1233344444445557888999999999910
Q ss_pred ----------hhhhhh---------hhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856 74 ----------RYRAIT---------SAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 74 ----------~~~~~~---------~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 133 (217)
.+.... ...=..+|+++|+++++... ...++ ..+..|. ..+++|.|+.|.|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCH
Confidence 011000 01113668999999986532 21222 2344443 36789999999997542
Q ss_pred cCCC--HHHHHHHHHHcCCcEEEEec
Q 027856 134 RAVS--TEDATAFAERENTFFMETSA 157 (217)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~~~~~Sa 157 (217)
.+.. ...+.+....+++.++....
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHHHHcCceeecccc
Confidence 2211 12223334456766655443
No 304
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.3e-11 Score=98.79 Aligned_cols=155 Identities=20% Similarity=0.192 Sum_probs=106.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC--------------------cCCCCCc---------ccceeEeEEEEEEECCe
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN--------------------EFSLESK---------STIGVEFATRSIRCDDK 60 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~--------------------~~~~~~~---------~~~~~~~~~~~~~~~~~ 60 (217)
....++.+++|+..+|||||+.+++.. ..+..|. ...|.+......+++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 346799999999999999999998752 1112221 23455566666667777
Q ss_pred EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh---hHHHHH--HHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVE--RWLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~--~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
...++|+|+||+..|......-..++|+.++|+|++... .|+... +-...+.+..+ -..++|++||+|+.+..+
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccH
Confidence 789999999999999888888889999999999998532 121110 11112222222 445789999999987665
Q ss_pred CCHHHHHH----HH-HHc-----CCcEEEEecCCCCCHHH
Q 027856 136 VSTEDATA----FA-ERE-----NTFFMETSALESMNVEN 165 (217)
Q Consensus 136 ~~~~~~~~----~~-~~~-----~~~~~~~Sa~~~~~i~~ 165 (217)
-..+++.. |. +.. .+.|+++|+..|+|+-.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 55555533 33 222 34699999999999644
No 305
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.2e-10 Score=90.12 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=101.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC----C---CCCcccceeEeEEEEEEE-------CCeEEEEEEEeCCChhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF----S---LESKSTIGVEFATRSIRC-------DDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~----~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~ 76 (217)
...++++++|+-.+|||||.++|..-.- + .+.....+.+.--..+.+ .++..++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 3459999999999999999999886322 1 111112222222222222 3555789999999987665
Q ss_pred hhhhhhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCcc--CCCHHHHH-HHHHH-----
Q 027856 77 AITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHLR--AVSTEDAT-AFAER----- 147 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~-~~~~~----- 147 (217)
........-.|..++|+|+......+..+- .+.++.. ...++|+||+|...+. ....++.. .+.+.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-----~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-----KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc-----cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 555555566799999999987654444433 3333332 3357888888875432 12222221 11111
Q ss_pred --cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 027856 148 --ENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181 (217)
Q Consensus 148 --~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 181 (217)
-+.+++++||.+|.--.+.+..+.+.+..+..+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 2378999999999666666666666665555444
No 306
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.7e-11 Score=102.83 Aligned_cols=166 Identities=17% Similarity=0.205 Sum_probs=110.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC------------C----eEEEEEEEeCCChhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD------------D----KIVKAQIWDTAGQERY 75 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~l~Dt~G~~~~ 75 (217)
..+=+||+|+-.+|||-|+..+-+.++...-...++-..-..++... + .---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 35668999999999999999999876654332332222222222221 1 1125689999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-----c-CC----------CHH
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-----R-AV----------STE 139 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----~-~~----------~~~ 139 (217)
..+.......||.+|+|+|+...-..+.++ -++.|+. .+.|+||++||+|.... + .+ ...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhH-HHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 999999999999999999998653222221 2233333 48999999999997421 0 00 000
Q ss_pred H--------HHHHHHH-c-------------CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 027856 140 D--------ATAFAER-E-------------NTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181 (217)
Q Consensus 140 ~--------~~~~~~~-~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 181 (217)
+ +.+|+.. + -+.++++||.+|+|+.+++.+|++..+....++
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 0 1122211 1 123788999999999999999999888877765
No 307
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.31 E-value=4.8e-11 Score=90.22 Aligned_cols=119 Identities=16% Similarity=0.226 Sum_probs=71.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccccee-----------EeEEEEEEECC--------------------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV-----------EFATRSIRCDD-------------------- 59 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-------------------- 59 (217)
...++|+|+|+.|+||||+++++.+..+.+......+. ......+.+.+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 34568999999999999999999997632211110000 00000010110
Q ss_pred -------------------eEEEEEEEeCCChhh-------------hhhhhhhhhcC-CcEEEEEEECCChhhHHHHHH
Q 027856 60 -------------------KIVKAQIWDTAGQER-------------YRAITSAYYRG-AVGALLVYDVTRHVTFENVER 106 (217)
Q Consensus 60 -------------------~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~ 106 (217)
....++++||||... ...+...++.+ .+++++|+|+....+-.+...
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 013789999999531 22345566674 468999999865433222223
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 107 WLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 107 ~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
+...+.. .+.++++|+||.|..+
T Consensus 184 ia~~ld~---~~~rti~ViTK~D~~~ 206 (240)
T smart00053 184 LAKEVDP---QGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHH---cCCcEEEEEECCCCCC
Confidence 3333333 3789999999999865
No 308
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.31 E-value=1.7e-10 Score=92.13 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=82.4
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh----------hHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCC
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV----------TFENVERWLKELRD-HTDSNIVIMLVGNKADL 130 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~ 130 (217)
+.+.+||.+|+...+..|..++.++++++||+|+++.. -+.+....+..+.. ..-.+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 57899999999999999999999999999999999732 23333333333332 22257999999999998
Q ss_pred CCcc---------------CCCHHHHHHHHHH-----c------CCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 131 RHLR---------------AVSTEDATAFAER-----E------NTFFMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 131 ~~~~---------------~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
..++ ..+.+.+..+... . .+..+.++|.+-.++..+|+.+.+.+.+..
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 4311 1234444444322 1 234677889999999999999888777654
No 309
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.30 E-value=1.3e-10 Score=97.59 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=77.5
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-cceeEeEEEEEEECCeEEEEEEEeCCChhhh----------h
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDKIVKAQIWDTAGQERY----------R 76 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~ 76 (217)
.+.+..++|+|+|.+|+||||++|++++......... ..+..........++ ..+.++||||.... .
T Consensus 113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 3456678999999999999999999999865433221 122222222233344 57899999994321 1
Q ss_pred hhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 027856 77 AITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSN--IVIMLVGNKADLRH 132 (217)
Q Consensus 77 ~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~ 132 (217)
.....++. .+|++|+|..++.......-..++..+...++.+ ..+|||+|..|...
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11122333 5899999988764332212235666666666543 45789999999865
No 310
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.29 E-value=8.8e-12 Score=95.57 Aligned_cols=161 Identities=19% Similarity=0.126 Sum_probs=108.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------ERYRAIT 79 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~ 79 (217)
......-|+|||.+|+||||||++|++....+...-..+.+......+.... ..+.+.||.|. ..|.+..
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH
Confidence 3455678999999999999999999987766655555555555555444332 37789999993 2333333
Q ss_pred hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEE
Q 027856 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV----IMLVGNKADLRHLRAVSTEDATAFAERENTFFMET 155 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
.-...+|.++.|.|+++|..-+..+..+..+.+..-+..| ++=|-||+|..... . -...++ .+.+
T Consensus 253 -eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~-------e~E~n~--~v~i 321 (410)
T KOG0410|consen 253 -EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-V-------EEEKNL--DVGI 321 (410)
T ss_pred -HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-C-------ccccCC--cccc
Confidence 3346799999999999998655555566666655333334 34466777764421 1 111222 6789
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhhh
Q 027856 156 SALESMNVENAFTEVLTQIYRVVSRK 181 (217)
Q Consensus 156 Sa~~~~~i~~~~~~i~~~~~~~~~~~ 181 (217)
|+++|.|.+++.+.+-..+.....-.
T Consensus 322 saltgdgl~el~~a~~~kv~~~t~~~ 347 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVASETTVD 347 (410)
T ss_pred ccccCccHHHHHHHHHHHhhhhheee
Confidence 99999999999888877766554433
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.27 E-value=6.9e-11 Score=93.03 Aligned_cols=104 Identities=17% Similarity=0.041 Sum_probs=64.9
Q ss_pred EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH--
Q 027856 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST-- 138 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 138 (217)
.+.+.|+||+|.- .........+|.++++.... +.+++..+...+. ++|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~---~~e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVG---QSEVDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCc---hhhhHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 3688999999943 12223566788888885433 3334444333332 567799999999865321110
Q ss_pred HH----HHHHHH---HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 139 ED----ATAFAE---RENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 139 ~~----~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
.. ...+.. .+..+++++||+++.|++++++++.+.+.
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 011111 12346999999999999999999998744
No 312
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.1e-10 Score=89.31 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=62.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe----------------EEEEEEEeCCChh---
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK----------------IVKAQIWDTAGQE--- 73 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~Dt~G~~--- 73 (217)
.+++++||.||+|||||.|+++.........|..+++.....+.+.+. ...+.|+|.+|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999998865444466666666665544211 2578999999932
Q ss_pred ----hhhhhhhhhhcCCcEEEEEEECCC
Q 027856 74 ----RYRAITSAYYRGAVGALLVYDVTR 97 (217)
Q Consensus 74 ----~~~~~~~~~~~~~d~ii~v~d~~~ 97 (217)
.+......-++.+|+++.|+++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 223333445689999999999873
No 313
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=5.6e-11 Score=87.10 Aligned_cols=147 Identities=20% Similarity=0.244 Sum_probs=94.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhhhhhcCC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA-----ITSAYYRGA 86 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~ 86 (217)
.-||+++|.+|+|||++=..+..+... ....++.+++.....+.+-|. ..+.+||+.|++.+-. .....+.++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 358999999999999986655543321 122244455666666655554 5889999999885432 345678899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCccC--CCHHHHHHH----HHHcCCcEEEEecC
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRHLRA--VSTEDATAF----AERENTFFMETSAL 158 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~----~~~~~~~~~~~Sa~ 158 (217)
+++++|+|++..+-..+++.+...+.... .+...+++..+|.|+..... ....+..+. ....++.++++|..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999998775555555554433332 25667888899999975432 222222222 22344568888877
Q ss_pred CC
Q 027856 159 ES 160 (217)
Q Consensus 159 ~~ 160 (217)
+.
T Consensus 163 De 164 (295)
T KOG3886|consen 163 DE 164 (295)
T ss_pred hH
Confidence 54
No 314
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.23 E-value=1.4e-10 Score=83.24 Aligned_cols=53 Identities=19% Similarity=0.089 Sum_probs=44.4
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 122 MLVGNKADLRHLRAVSTEDATAFAERE--NTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 122 ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
++|+||.|+...-..+.+...+-+++. +.+++++|+++|+|+++++.|+...+
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 789999999886677777777777664 57899999999999999999987653
No 315
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.8e-10 Score=91.98 Aligned_cols=155 Identities=19% Similarity=0.093 Sum_probs=107.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCC---CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
-|+..|+-..|||||+..+.+..... .....++++. .....+.....+.|+|.||++++-+.....+..+|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDl--g~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDL--GFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEee--eeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 57889999999999999999875432 3333444444 444344444589999999999999888888889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH---HcCCcEEEEecCCCCCHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE---RENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
|+++++.-..+..+.+ ..+. .. .....++|+||+|..++..+ .+...+... ....++|.+|+.+|.|++++-+
T Consensus 80 vV~~deGl~~qtgEhL-~iLd-ll-gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTGEHL-LILD-LL-GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhHHHH-HHHH-hc-CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 9999765444433321 1111 11 13345899999998763211 111222222 2346689999999999999999
Q ss_pred HHHHHHH
Q 027856 169 EVLTQIY 175 (217)
Q Consensus 169 ~i~~~~~ 175 (217)
.|.....
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9998773
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.8e-10 Score=96.86 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=87.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcC--CC----------------CCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF--SL----------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+...+|+++|+..+|||||..+++-..- .. +....+++......+.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 56788999999999999999999885311 00 0011233444444444443 57999999999
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
+..|..-....++-+|++++|+|+...-..+.-.-|+..... ++|.++++||+|...
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~~ 142 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRLG 142 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECccccc
Confidence 999999999999999999999999887655544445555443 899999999999754
No 317
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.17 E-value=1e-09 Score=85.95 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=76.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC----------CcccceeEeEEEEEEECCeEEEEEEEeCCChhh------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE----------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER------ 74 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 74 (217)
-..++|+++|+.|+|||||+|.|++...... ..++..+......+.-++..+.++++||||.-.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4579999999999999999999999744322 224444555555566678889999999999100
Q ss_pred --------hhhhhhhhh--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 75 --------YRAITSAYY--------------RGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 75 --------~~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
.......++ ..+|+++|.+..+... +..+ -..+..+.. .+.+|.|+.|.|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSK----RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence 011111111 3578999998865432 1111 123333433 56788999999975
Q ss_pred C
Q 027856 132 H 132 (217)
Q Consensus 132 ~ 132 (217)
.
T Consensus 176 T 176 (373)
T COG5019 176 T 176 (373)
T ss_pred C
Confidence 4
No 318
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=5.5e-10 Score=82.46 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=88.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC---------CCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL---------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ--------- 72 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------- 72 (217)
-..++|+|||.+|.|||||+|+++..+... .+..|..+......+.-++...+++++||||.
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 467999999999999999999998865432 11223333333344444777789999999991
Q ss_pred ---------h--------hhhhhhhhhhc--CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 73 ---------E--------RYRAITSAYYR--GAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 73 ---------~--------~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
+ +........+. .+++++|.+..+... +.-+ -.++..+.+ -..++.|+-|.|...
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTE----VVNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhh----hheeeeeEeeccccc
Confidence 1 11111222222 456777777765432 2222 234444433 345788889999643
Q ss_pred c--cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 133 L--RAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 133 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
- +..-.+.+.+-...+++.+++--+.+...-+..++.
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~ 237 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND 237 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence 1 112223334445557788777666654433333333
No 319
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.14 E-value=3.4e-09 Score=83.58 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=88.7
Q ss_pred eEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh-------HHHHHHHHHHHHhhc----CCC
Q 027856 50 FATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT-------FENVERWLKELRDHT----DSN 118 (217)
Q Consensus 50 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-------~~~~~~~~~~l~~~~----~~~ 118 (217)
.....+.+.+ ..+.++|.+|+...+..|..++.+++++|||+++++... .+.+..-+..+...+ -.+
T Consensus 185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ 262 (354)
T KOG0082|consen 185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN 262 (354)
T ss_pred eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence 3344444444 688999999999999999999999999999999987432 222333222222222 257
Q ss_pred CcEEEEEeCCCCCCcc---------------CCCHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 119 IVIMLVGNKADLRHLR---------------AVSTEDATAFAER----------ENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 119 ~p~ivv~nK~D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
.++|+++||.|+-+++ .-..+++..+... ..+.+..+.|.+-.+++.+|..+.+.
T Consensus 263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~ 342 (354)
T KOG0082|consen 263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT 342 (354)
T ss_pred CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence 8999999999984321 1234455444332 12446677899999999999999988
Q ss_pred HHHHHhh
Q 027856 174 IYRVVSR 180 (217)
Q Consensus 174 ~~~~~~~ 180 (217)
+.....+
T Consensus 343 Ii~~nlk 349 (354)
T KOG0082|consen 343 IIQNNLK 349 (354)
T ss_pred HHHHHHH
Confidence 8766543
No 320
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.13 E-value=1.2e-10 Score=87.62 Aligned_cols=154 Identities=20% Similarity=0.157 Sum_probs=89.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcC-----------CCCCccc---------------ceeEeEEEEEEECCe-----
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEF-----------SLESKST---------------IGVEFATRSIRCDDK----- 60 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~~----- 60 (217)
..+.|++.|+||+|||||+++|...-. +++.+.+ .....+...+...+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 467999999999999999998775311 1111110 011122222222211
Q ss_pred -------------EEEEEEEeCCC--hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 027856 61 -------------IVKAQIWDTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125 (217)
Q Consensus 61 -------------~~~~~l~Dt~G--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~ 125 (217)
.+.+.|++|.| +.+.. ...-+|.+++|.-..-.+..+.++.-+-++.. ++|+
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vV 174 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVV 174 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEE
Confidence 15888899987 33332 45668999999998877666555544444432 7999
Q ss_pred eCCCCCCccCCCHHHHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027856 126 NKADLRHLRAVSTEDATAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYRVVS 179 (217)
Q Consensus 126 nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 179 (217)
||.|....+ ....+.+..... +..+++.+||.++.|++++++.|.++......
T Consensus 175 NKaD~~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~ 234 (266)
T PF03308_consen 175 NKADRPGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKE 234 (266)
T ss_dssp E--SHHHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred eCCChHHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 999964321 122333333322 23579999999999999999999876554443
No 321
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.7e-10 Score=86.84 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=90.8
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEE----------------------
Q 027856 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIV---------------------- 62 (217)
Q Consensus 6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------------- 62 (217)
.+.+.+...-|+++|+-..||||+|+.|+.+.++. ...+..++++....++-+...+
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 45667788899999999999999999999998875 3345555666666554432221
Q ss_pred -----------------EEEEEeCCChh-----------hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhh
Q 027856 63 -----------------KAQIWDTAGQE-----------RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH 114 (217)
Q Consensus 63 -----------------~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~ 114 (217)
.++++||||.- .|.....-|...+|.||++||+...+-.++....+..+...
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 78999999921 23344555778999999999998776555556666666554
Q ss_pred cCCCCcEEEEEeCCCCCC
Q 027856 115 TDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 115 ~~~~~p~ivv~nK~D~~~ 132 (217)
.-.+-||.||.|.++
T Consensus 211 ---EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 211 ---EDKIRVVLNKADQVD 225 (532)
T ss_pred ---cceeEEEeccccccC
Confidence 556778999999865
No 322
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.10 E-value=1.9e-09 Score=82.35 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=95.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC-----------CCCCcccc---------------eeEeEEEEEEECC-----
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF-----------SLESKSTI---------------GVEFATRSIRCDD----- 59 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~~---------------~~~~~~~~~~~~~----- 59 (217)
.....|+|.|.||+|||||+..|...-. +++.+.|- ....+...+...|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 3467899999999999999998876321 22221110 1111111111111
Q ss_pred -------------eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 027856 60 -------------KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126 (217)
Q Consensus 60 -------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~n 126 (217)
-.+.+.|++|.|-= +.-......+|.++++.-..-.+..+.++.-+.++.. ++|+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvG---Qsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVG---QSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCC---cchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEe
Confidence 11588899998721 1112244568999998777777666666555444443 79999
Q ss_pred CCCCCCccCCCHHHHH---HHH----H--HcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027856 127 KADLRHLRAVSTEDAT---AFA----E--RENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180 (217)
Q Consensus 127 K~D~~~~~~~~~~~~~---~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 180 (217)
|.|..... ....+.. ... . .+..+++.+||..|+|++++++.|.++.......
T Consensus 198 KaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 198 KADRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred ccChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 99964321 1111111 111 1 1446699999999999999999998876655433
No 323
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=5e-09 Score=82.63 Aligned_cols=145 Identities=19% Similarity=0.267 Sum_probs=87.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC---------CcccceeEeEEEEEEECCeEEEEEEEeCCChh--------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE---------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-------- 73 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------- 73 (217)
-..++++++|..|.|||||||.|++..+... ...+..+......+.-+|..+.++++||||.-
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3569999999999999999999998754332 22244455555555557788899999999910
Q ss_pred ----------hhh-------hhhhhhh--cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856 74 ----------RYR-------AITSAYY--RGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 74 ----------~~~-------~~~~~~~--~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 133 (217)
.+. .+.+..+ ..+|+++|.+...... ..-++ ..+..+. ..+.+|.|+.|.|....
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-~~Mk~l~----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-EFMKKLS----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH-HHHHHHh----ccccccceeeccccCCH
Confidence 111 0111112 2678999999876432 11111 2233332 36778999999997653
Q ss_pred cCCC--HHHHHHHHHHcCCcEEEEecCCC
Q 027856 134 RAVS--TEDATAFAERENTFFMETSALES 160 (217)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
.+.. ...+.+.+..+++.+|....-..
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 3221 12233445556777666555443
No 324
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=6.5e-09 Score=79.12 Aligned_cols=173 Identities=17% Similarity=0.144 Sum_probs=104.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcC-------------C-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEF-------------S-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
...+.++|+.+|+-..|||||..+++.-.. . .-.....+++.....+.+.-....+-.+|+||+..
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 455679999999999999999888765211 0 00011234444444444444445778999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHcCC
Q 027856 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAERENT 150 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 150 (217)
|-.....-..+.|+.|+|+++.+..-.+.-+..+ ..++ .+.| +++++||+|+.+..+. -..|..++...+++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-larq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 9988888888999999999999854322222211 1111 2554 6778899999874322 22334555566554
Q ss_pred -----cEEEEecCCC-CC---HHHHHHHHHHHHHHHHhhhhhcc
Q 027856 151 -----FFMETSALES-MN---VENAFTEVLTQIYRVVSRKALEI 185 (217)
Q Consensus 151 -----~~~~~Sa~~~-~~---i~~~~~~i~~~~~~~~~~~~~~~ 185 (217)
+++.-||..- ++ -.+-...+++++-.+....+.+.
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~ 207 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDI 207 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcc
Confidence 4666676642 22 22333344444444444444443
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.05 E-value=3.1e-10 Score=87.59 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=39.6
Q ss_pred CcEEEEEeCCCCCCccCCCHHHHHHHHHH--cCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 119 IVIMLVGNKADLRHLRAVSTEDATAFAER--ENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 119 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
..-++|+||+|+........+...+..+. .+.+++++|+++|+|++++++||..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44589999999975322234444444444 3577999999999999999999976
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.6e-09 Score=89.15 Aligned_cols=117 Identities=25% Similarity=0.290 Sum_probs=84.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC---------cc--------cceeEeEEEEE---EECCeEEEEEEEeC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES---------KS--------TIGVEFATRSI---RCDDKIVKAQIWDT 69 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~---------~~--------~~~~~~~~~~~---~~~~~~~~~~l~Dt 69 (217)
.+...+|+++|+-++|||+|+.-|..+..+... .. ..++.....++ ..+++.+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 456789999999999999999998876542221 11 11111222222 22577789999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 130 (217)
||+..+..-....++.+|++++|+|+...-+++. +..+....+ ...|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ---NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh---ccCcEEEEEehhHH
Confidence 9999998888889999999999999988776553 233333222 47899999999996
No 327
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.01 E-value=2.3e-09 Score=87.64 Aligned_cols=165 Identities=21% Similarity=0.348 Sum_probs=121.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
+.+.+|++|+|..++|||+|+.+++-+.+.....+.-+ .+...+-+++....+.+.|.+|.. ..-|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 44678999999999999999999998887665544332 445556678888888888888832 22355678999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC--ccCCCHHHHHHH-HHHcCCcEEEEecCCCCCHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH--LRAVSTEDATAF-AERENTFFMETSALESMNVEN 165 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~ 165 (217)
|||+...+..+++.+..+...+..+.. ..+|.++++++.-... .+.+...+..+. ++...+.||++++.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 999999999999988877776654443 4678888888754422 123333344444 444568899999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 027856 166 AFTEVLTQIYRVVSRK 181 (217)
Q Consensus 166 ~~~~i~~~~~~~~~~~ 181 (217)
+|+.+...+...+...
T Consensus 180 vf~~~~~k~i~~~~~q 195 (749)
T KOG0705|consen 180 VFQEVAQKIVQLRKYQ 195 (749)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999998888775544
No 328
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=6.5e-09 Score=83.06 Aligned_cols=132 Identities=18% Similarity=0.183 Sum_probs=89.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--cC----------C---CCC-----cccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN--EF----------S---LES-----KSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~--~~----------~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
.-..+|+-+|.+|||||-..|+-- -. . ..+ ....|+......++++.....++|.||||+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 456789999999999999987641 11 0 000 113455555666666666679999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC
Q 027856 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT 150 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (217)
+.|..-+...+.-+|..+.|+|+...-..+. .++++..+- .++|++=++||+|.... -..+.+.+....+++
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl---R~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i 163 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL---RDIPIFTFINKLDREGR--DPLELLDEIEEELGI 163 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh---cCCceEEEeeccccccC--ChHHHHHHHHHHhCc
Confidence 9998877777888999999999976543222 234444333 49999999999997542 234444455444443
No 329
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.99 E-value=1.7e-09 Score=80.82 Aligned_cols=153 Identities=22% Similarity=0.189 Sum_probs=98.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhhhhhcC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY-------RAITSAYYRG 85 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~ 85 (217)
.-+|.++|.|.+||||++..|.+..-........+.........+++ -++++.|.||.-+- ........+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 44899999999999999999998775544334445555555555666 58899999994322 2233455678
Q ss_pred CcEEEEEEECCChhhHHHH-----------------------------------------HHHHHHHHhhc---------
Q 027856 86 AVGALLVYDVTRHVTFENV-----------------------------------------ERWLKELRDHT--------- 115 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~-----------------------------------------~~~~~~l~~~~--------- 115 (217)
|+.+++|.|+..|-+-..+ ...+.+.+...
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da 216 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA 216 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence 9999999998764332111 11111111000
Q ss_pred ----------C--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHH
Q 027856 116 ----------D--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 116 ----------~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+ ..+|++.+.||+|... .+|..-. ..++ .+++||..++|++++++.+.+.+-
T Consensus 217 T~DdLIdvVegnr~yVp~iyvLNkIdsIS-----iEELdii---~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 217 TADDLIDVVEGNRIYVPCIYVLNKIDSIS-----IEELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred chhhhhhhhccCceeeeeeeeecccceee-----eecccee---eeccceeecccccccchHHHHHHHhhcch
Confidence 0 1467888888888533 3322211 1222 788999999999999999988654
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.95 E-value=8.2e-09 Score=76.04 Aligned_cols=93 Identities=18% Similarity=0.107 Sum_probs=65.7
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcC
Q 027856 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-----EREN 149 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 149 (217)
+...+..+++.+|++++|+|++++.. .|...+... ..+.|+++|+||+|+... ....+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcC
Confidence 57788889999999999999987642 122222211 236899999999999653 22333333333 2233
Q ss_pred C---cEEEEecCCCCCHHHHHHHHHHHH
Q 027856 150 T---FFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 150 ~---~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
. .++++||++|.|++++++.|.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 2 589999999999999999998865
No 331
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.94 E-value=4.3e-09 Score=75.00 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=65.3
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEE
Q 027856 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFME 154 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (217)
++.+....+.++|++++|+|++++..... ..+...+.. .++|+++|+||+|+..... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 34567778889999999999987653222 122222222 3689999999999854211 11122233445677999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 027856 155 TSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 155 ~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987765
No 332
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.94 E-value=9e-08 Score=78.70 Aligned_cols=168 Identities=15% Similarity=0.136 Sum_probs=104.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-c-------------------------------------------
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-S------------------------------------------- 44 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~------------------------------------------- 44 (217)
-.++.++|+|||+..+||||.+..+......+... .
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 45678999999999999999999877654322211 1
Q ss_pred ----------cceeEeEEEEEEECCeE-EEEEEEeCCC-------------hhhhhhhhhhhhcCCcEEEEEEECCChhh
Q 027856 45 ----------TIGVEFATRSIRCDDKI-VKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDVTRHVT 100 (217)
Q Consensus 45 ----------~~~~~~~~~~~~~~~~~-~~~~l~Dt~G-------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 100 (217)
.-+.......+.+.|.. -.+.++|.|| .+...++..+++.+.++||+|+--..-+.
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence 11122222233333322 3778999999 23445667788999999999975322211
Q ss_pred HHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-----cEEEEecCCCCCHHHHHHHHHHHH
Q 027856 101 FENVERWL-KELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-----FFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 101 ~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
-+... ..+.+....+...|+|++|.|+.+..-.+...+++.....-+ .||-+-.-.|.. ++.++.|-++=
T Consensus 464 ---ERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGns-sdSIdaIR~YE 539 (980)
T KOG0447|consen 464 ---ERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNS-SESIEAIREYE 539 (980)
T ss_pred ---hhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCc-chhHHHHHHHH
Confidence 12222 223333335788999999999998777888888888776422 266666555533 45555555444
Q ss_pred HHHHhh
Q 027856 175 YRVVSR 180 (217)
Q Consensus 175 ~~~~~~ 180 (217)
.+.+..
T Consensus 540 E~FF~n 545 (980)
T KOG0447|consen 540 EEFFQN 545 (980)
T ss_pred HHHhhh
Confidence 444433
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.93 E-value=3e-09 Score=76.83 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=42.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
...++++++|.||+|||||+|+|++....... +..+++.....+..+. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 44589999999999999999999997654433 3345555445554443 578999998
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.91 E-value=3.5e-09 Score=74.20 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=40.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
+++++|.+|+|||||+|++++....... ...+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999998764322 3344444455555554 5789999994
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.89 E-value=6e-09 Score=74.36 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=39.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999987654433 3344444444443333 368999998
No 336
>PRK12289 GTPase RsgA; Reviewed
Probab=98.88 E-value=1.1e-08 Score=81.72 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=67.3
Q ss_pred hhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEE
Q 027856 77 AITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMET 155 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
.+....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+..... .+........++..++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34455688999999999998775 44455667665533 3789999999999964221 122233345678889999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 027856 156 SALESMNVENAFTEVLTQ 173 (217)
Q Consensus 156 Sa~~~~~i~~~~~~i~~~ 173 (217)
||.++.|++++++.+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999888643
No 337
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.3e-08 Score=74.14 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=98.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh---hhhhhhcCCcEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA---ITSAYYRGAVGA 89 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~i 89 (217)
..+|+++|..-+||||+-+....+..+... -..+.+.....-++....+.+.+||.||+..+-. -.+..++++.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 477999999999999998776655433222 1111111111112233457899999999764432 346678999999
Q ss_pred EEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc-CC-CHHHH----HHHHHH-----cCCcEEEEe
Q 027856 90 LLVYDVTRHV--TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR-AV-STEDA----TAFAER-----ENTFFMETS 156 (217)
Q Consensus 90 i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~-~~~~~----~~~~~~-----~~~~~~~~S 156 (217)
++|+|+.+.. .+..+.......... .+++.+=+.+.|.|...++ .+ ....+ .+.... ..+.|+.+|
T Consensus 106 ifvIDaQddy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDDYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHHHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 9999987642 222222222222222 2578888999999975421 11 11111 111111 223356666
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhh
Q 027856 157 ALESMNVENAFTEVLTQIYRVVSRKA 182 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~~~~~~~~~ 182 (217)
..+ ..+-+.|..+++++..+.+.-+
T Consensus 185 IyD-HSIfEAFSkvVQkLipqLptLE 209 (347)
T KOG3887|consen 185 IYD-HSIFEAFSKVVQKLIPQLPTLE 209 (347)
T ss_pred ecc-hHHHHHHHHHHHHHhhhchhHH
Confidence 554 4688999999888876655443
No 338
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=1.7e-08 Score=78.98 Aligned_cols=88 Identities=15% Similarity=0.034 Sum_probs=67.6
Q ss_pred hhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856 80 SAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL 158 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
...+.++|.+++|+|+.++. ++..++.|+..+... ++|+++|+||+|+.+.. ............+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 33578999999999999887 778888888877653 78999999999996531 1112233344567889999999
Q ss_pred CCCCHHHHHHHHHH
Q 027856 159 ESMNVENAFTEVLT 172 (217)
Q Consensus 159 ~~~~i~~~~~~i~~ 172 (217)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999998887653
No 339
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-07 Score=79.42 Aligned_cols=118 Identities=15% Similarity=0.225 Sum_probs=74.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEE---------------------------------------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFAT--------------------------------------- 52 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 52 (217)
...||++.|..++||||++|+++....-++..-..+.-+..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 46899999999999999999999865543321111000000
Q ss_pred ----EEEEECCe-----EEEEEEEeCCCh---hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc
Q 027856 53 ----RSIRCDDK-----IVKAQIWDTAGQ---ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120 (217)
Q Consensus 53 ----~~~~~~~~-----~~~~~l~Dt~G~---~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p 120 (217)
..+.+++. .-.+.++|.||. ....+-...+...+|++|+|.++.+..+..+ ..++...... +..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CCc
Confidence 00000000 016779999993 3445555677789999999999987765443 3444444432 455
Q ss_pred EEEEEeCCCCCCc
Q 027856 121 IMLVGNKADLRHL 133 (217)
Q Consensus 121 ~ivv~nK~D~~~~ 133 (217)
++|+-||+|....
T Consensus 264 iFIlnnkwDasas 276 (749)
T KOG0448|consen 264 IFILNNKWDASAS 276 (749)
T ss_pred EEEEechhhhhcc
Confidence 6777799998653
No 340
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.81 E-value=2.2e-07 Score=75.95 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=76.3
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh----------HHHHHHHH-HHHHhhcCCCCcEEEEEeCCCC
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT----------FENVERWL-KELRDHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s----------~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~ 130 (217)
..+.++|++|+...+..|..++.+++++|||+++++..- +.+.-.++ ..+....-.+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 688999999999999999999999999999999875321 22222223 3333333357999999999997
Q ss_pred CCc----------------c--CCCHHHHHHHHHH------------cCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 131 RHL----------------R--AVSTEDATAFAER------------ENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 131 ~~~----------------~--~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
..+ . .-..+.+..+... ..+.+..++|.+..++..+|+.+.+-
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 321 0 1234555555443 11246688888888899998887754
No 341
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.80 E-value=2e-08 Score=75.90 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=94.1
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhh
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAG----------QERY 75 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~ 75 (217)
|-+....++++++|.+++|||+|++-++..+...... +..+.+.....+.+.. .+.++|.|| ...+
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchH
Confidence 4445667999999999999999999988866533222 2444444444444444 778999999 1233
Q ss_pred hhhhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-------CC----HHHH
Q 027856 76 RAITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-------VS----TEDA 141 (217)
Q Consensus 76 ~~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-------~~----~~~~ 141 (217)
......|+. +---+++.+|++-+....+. ..+..+.+ .+.|..+|+||+|...... .. ...+
T Consensus 207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDN-PEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHhHHHHHHhhhhhheeeeeeeccCCCCCCCh-HHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 333344432 22235566676654321111 11222222 3899999999999743110 00 1111
Q ss_pred HHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 142 TAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 142 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
.+-......+|+.+|+.++.|++.++-.|..
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 1112223456889999999999988766653
No 342
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=3.8e-08 Score=77.36 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=99.3
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC----------------cc-------cceeEeEEEEEEEC-----
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KS-------TIGVEFATRSIRCD----- 58 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~-------~~~~~~~~~~~~~~----- 58 (217)
|......++++++|.-.+|||||+-.|..+..+... .. ..|.+.....+.+.
T Consensus 161 d~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~ta 240 (591)
T KOG1143|consen 161 DSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTA 240 (591)
T ss_pred CcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccH
Confidence 444556799999999999999999988876543221 11 22222222222221
Q ss_pred -----CeEEEEEEEeCCChhhhhhhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 59 -----DKIVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 59 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
...--++++|.+|+..|.+..-..+. ..|..++|+++....++.. +.-+..+... ++|++++++|+|+.
T Consensus 241 EEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 241 EEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLV 316 (591)
T ss_pred HHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccc
Confidence 11236789999999999876654443 3488999999987765433 2223333333 89999999999996
Q ss_pred Ccc------------------------CCCHHHHHHHHHH----cCCcEEEEecCCCCCHHHH
Q 027856 132 HLR------------------------AVSTEDATAFAER----ENTFFMETSALESMNVENA 166 (217)
Q Consensus 132 ~~~------------------------~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~ 166 (217)
+.. ..+..++...+++ +-.++|.+|+.+|++++-+
T Consensus 317 ~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 317 DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 531 1122333333333 3356899999999997654
No 343
>PRK00098 GTPase RsgA; Reviewed
Probab=98.79 E-value=2.7e-08 Score=78.29 Aligned_cols=86 Identities=19% Similarity=0.119 Sum_probs=64.3
Q ss_pred hhcCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856 82 YYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES 160 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
...++|.+++|+|+.++.+... +..|+..+.. .++|+++|+||+|+.+... ...+..+.....+.+++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988765443 4667766654 3789999999999963221 122344455567888999999999
Q ss_pred CCHHHHHHHHH
Q 027856 161 MNVENAFTEVL 171 (217)
Q Consensus 161 ~~i~~~~~~i~ 171 (217)
.|++++++.+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998764
No 344
>PRK12288 GTPase RsgA; Reviewed
Probab=98.78 E-value=5.8e-08 Score=77.68 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=66.7
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHcCCcEEEEecCCCC
Q 027856 83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAERENTFFMETSALESM 161 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (217)
..++|.+++|++.....++..+..|+..... .++|+++|+||+|+....+. ...+........+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888889888888876543 37899999999999653211 1122233345567889999999999
Q ss_pred CHHHHHHHHHH
Q 027856 162 NVENAFTEVLT 172 (217)
Q Consensus 162 ~i~~~~~~i~~ 172 (217)
|++++++.+..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999998865
No 345
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.76 E-value=2.9e-08 Score=71.87 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=42.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
...++++++|.+|+|||||++++.+..+... ....+++.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999999876432 2333444444545444 35789999993
No 346
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.75 E-value=3.8e-08 Score=77.12 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=43.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
...++|+++|.||+|||||+|+|.+....... +..+.+.....+..+. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 35689999999999999999999998754332 3445555555555544 5789999994
No 347
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.75 E-value=3.4e-08 Score=76.99 Aligned_cols=58 Identities=24% Similarity=0.403 Sum_probs=42.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
...++++++|.||+|||||+|+|.+....... ...+.+.....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 34689999999999999999999987654432 3344455555555543 5689999995
No 348
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.74 E-value=2.5e-07 Score=73.12 Aligned_cols=156 Identities=18% Similarity=0.126 Sum_probs=94.5
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc--------------cceeEeEEEEEEECCe--------------
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--------------TIGVEFATRSIRCDDK-------------- 60 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-------------- 60 (217)
..+..+.+++.|+-..|||||+-.|.-+..+..... ..+.+.....+-+++.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 355679999999999999999988776544222111 1111111222222211
Q ss_pred -------EEEEEEEeCCChhhhhhhhh--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 61 -------IVKAQIWDTAGQERYRAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 61 -------~~~~~l~Dt~G~~~~~~~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
.--+.|+||.|++.|..... .+-.+.|..++++.+++.-+.-.- +-+.-...-+.|+++++||+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk----EHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK----EHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh----HhhhhhhhhcCCEEEEEEecccC
Confidence 12678999999998876443 334678999999999987543221 11222222389999999999996
Q ss_pred CccCCC--HHHHHHH----------------------HHH--c-CCcEEEEecCCCCCHHHHHH
Q 027856 132 HLRAVS--TEDATAF----------------------AER--E-NTFFMETSALESMNVENAFT 168 (217)
Q Consensus 132 ~~~~~~--~~~~~~~----------------------~~~--~-~~~~~~~Sa~~~~~i~~~~~ 168 (217)
....+. .+++.+. +.. . -+++|.+|+.+|+|++-+.+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 532110 1111111 111 1 25699999999999765433
No 349
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.73 E-value=5.1e-08 Score=77.90 Aligned_cols=83 Identities=18% Similarity=0.044 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcC-CCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhh---
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQER--- 74 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~--- 74 (217)
++++++|.|++|||||++.|++... .....+..+.+.....+.+.+. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999886 4443355555566666666543 24678999999433
Q ss_pred ----hhhhhhhhhcCCcEEEEEEECC
Q 027856 75 ----YRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 75 ----~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223344678999999999985
No 350
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.72 E-value=1e-07 Score=76.94 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=69.7
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHH----HHHH
Q 027856 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATA----FAER 147 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~ 147 (217)
.+.+..+...+++.++++++|+|+.+.. ..|...+..... +.|+++|+||+|+.. +....+++.+ ++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 5678888888889999999999997654 234444444332 679999999999965 2333444443 3555
Q ss_pred cCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027856 148 ENT---FFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 148 ~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
.++ .++.+||++|.|++++|+.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 665 48999999999999999998654
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.70 E-value=3.6e-08 Score=72.58 Aligned_cols=56 Identities=23% Similarity=0.392 Sum_probs=39.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCC-------CCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-------LESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
..+++++|.+|+|||||+|+|.+.... .......+++.....+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 358999999999999999999986431 12223334555555555543 468999999
No 352
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.70 E-value=2.1e-07 Score=85.54 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=71.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcCCCCC----cccceeE-eEEEEEEECCeEEEEEEEeCCCh----h----hhhhhhhhh
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEFSLES----KSTIGVE-FATRSIRCDDKIVKAQIWDTAGQ----E----RYRAITSAY 82 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~Dt~G~----~----~~~~~~~~~ 82 (217)
-+|+|++|+||||++++- |..++... ..+.+.. .....+.+.+ ...++||+|. + .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999886 44443321 1111110 0122333344 4569999992 1 222334444
Q ss_pred h---------cCCcEEEEEEECCChhh---------HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 83 Y---------RGAVGALLVYDVTRHVT---------FENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 83 ~---------~~~d~ii~v~d~~~~~s---------~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
+ ...+++|+++|+.+.-+ -..++..+.++....+...|+.+++||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 3 35799999999875321 13345566777777778999999999999865
No 353
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.70 E-value=6.7e-08 Score=68.85 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=40.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
...+++++|.+|+|||||+++|.+.... ...++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999976533 3334555544433333333 688999998
No 354
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=3.3e-07 Score=75.83 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=84.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.++++-++|+|+||+||||||+.|...-.........| +.++ +.++...+++.++|.+ . +......+-+|.+
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiTv-vsgK~RRiTflEcp~D--l-~~miDvaKIaDLV 137 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PITV-VSGKTRRITFLECPSD--L-HQMIDVAKIADLV 137 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceEE-eecceeEEEEEeChHH--H-HHHHhHHHhhhee
Confidence 34567788999999999999998876532211111111 2222 4566779999999942 2 2233456778999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCCCHHHHHH-----HHHH--cCCcEEEEecCC
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAVSTEDATA-----FAER--ENTFFMETSALE 159 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~-----~~~~--~~~~~~~~Sa~~ 159 (217)
++++|..-....+.+ .+++.+..+ +.| ++-|+|..|+.... .....+.. +..+ .|+.+|.+|...
T Consensus 138 lLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 138 LLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 999998766443332 355555544 555 55688999996532 22222221 2222 367889988765
No 355
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.69 E-value=5.1e-08 Score=75.68 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=65.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQER 74 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 74 (217)
....++|++||.|++|||||.|.|+........-|..+++.....+.+.+. ...++++|++|...
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 346789999999999999999999998887665577777776666555322 35889999999332
Q ss_pred -------hhhhhhhhhcCCcEEEEEEECCC
Q 027856 75 -------YRAITSAYYRGAVGALLVYDVTR 97 (217)
Q Consensus 75 -------~~~~~~~~~~~~d~ii~v~d~~~ 97 (217)
+......-++.+|+++.|+++..
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22223345678999999998764
No 356
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.66 E-value=6.3e-06 Score=57.74 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=82.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCC-Ch------------------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA-GQ------------------ 72 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~------------------ 72 (217)
..++|++.|+||+||||++.++....-...+ ...| +....+.-++..+-|.+.|+. |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4689999999999999999988754432222 1111 334445557777778888887 30
Q ss_pred ---hhhh----hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH
Q 027856 73 ---ERYR----AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA 145 (217)
Q Consensus 73 ---~~~~----~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 145 (217)
+.+. ......+..+|++| +|---+--+. ...+...+......+.|++.++.+-+. .-..+..
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr--------~P~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR--------HPLVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC--------ChHHHHh
Confidence 1111 12233345567554 4433332111 245666666666678998888776542 1122233
Q ss_pred HHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 146 ERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 146 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
...+..++. .+.+|-+.++..+++.+
T Consensus 150 k~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 444433333 45555567777777654
No 357
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.5e-07 Score=79.91 Aligned_cols=119 Identities=20% Similarity=0.224 Sum_probs=83.8
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC--------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
.+....-+|+++.+-..|||||+..|+...--. ....+.|++....-+..-.+.+.++++|+||+.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 355677899999999999999999988643210 111233333333333333455789999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 130 (217)
.|.+.......-+|++++.+|+...-..+...-++..+. .+...++|+||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence 999988888899999999999987654443323333332 36667899999993
No 358
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.65 E-value=5.8e-08 Score=77.10 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=46.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
..++++++|.||+|||||||+|.+...... .+..|.+.....+..+.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence 357899999999999999999999987433 355577777777777663 789999993
No 359
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.3e-08 Score=76.60 Aligned_cols=160 Identities=21% Similarity=0.213 Sum_probs=100.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcC---CCCCcc--cceeEeEEEEE-EEC-------------------------
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF---SLESKS--TIGVEFATRSI-RCD------------------------- 58 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~-~~~------------------------- 58 (217)
.+.+++|+-+|+--.||||+++++.+-+. ..+-.. |+...+....+ .++
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 45689999999999999999999887321 110000 10000000000 000
Q ss_pred -Ce------EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027856 59 -DK------IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----HVTFENVERWLKELRDHTDSNIVIMLVGNK 127 (217)
Q Consensus 59 -~~------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 127 (217)
+. -..+.|+|+||++.+-....+-..-.|++++++..+. |++.+++.. -++.. =+.++++-||
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~----LkhiiilQNK 188 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK----LKHIIILQNK 188 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh----hceEEEEech
Confidence 00 0367899999998877666555555688888887764 445444422 11111 2347888999
Q ss_pred CCCCCccCC--CHHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 128 ADLRHLRAV--STEDATAFAER---ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 128 ~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+|+..+... ..+.+..|... .+++++++||.-..|++.+.+.|++++.
T Consensus 189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 999764322 23445555554 4678999999999999999888887664
No 360
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.60 E-value=6.4e-08 Score=68.55 Aligned_cols=59 Identities=25% Similarity=0.297 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCC------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSL------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
-.++++|++|||||||+|.|++..... .......++.....+..... ..++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 357999999999999999999973211 11111112222333444332 369999995544
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.60 E-value=1.4e-07 Score=67.11 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=38.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
....+|+++|.+|+|||||+|++++..... ...+..+ ........+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t--~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT--TSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc--cceEEEEec---CCEEEEECCC
Confidence 356889999999999999999999876422 2222222 223333333 2578999998
No 362
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.59 E-value=2.6e-07 Score=65.87 Aligned_cols=91 Identities=11% Similarity=0.029 Sum_probs=57.7
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM 161 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (217)
.+..+|++++|+|++++.... ...+...+... ..+.|+++|+||+|+...... ......+........+.+||+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 467899999999999874321 12233333322 235899999999999642211 111222222222335789999999
Q ss_pred CHHHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQIY 175 (217)
Q Consensus 162 ~i~~~~~~i~~~~~ 175 (217)
|++++++.+.+.+.
T Consensus 82 ~~~~L~~~l~~~~~ 95 (157)
T cd01858 82 GKGSLIQLLRQFSK 95 (157)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999876543
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=8.2e-07 Score=63.20 Aligned_cols=86 Identities=17% Similarity=0.059 Sum_probs=56.1
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.....+ .+....+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 68999999988765432 23321 1112237899999999998542111 11112232233556899999999999999
Q ss_pred HHHHHHHHHH
Q 027856 167 FTEVLTQIYR 176 (217)
Q Consensus 167 ~~~i~~~~~~ 176 (217)
++.+.+...+
T Consensus 77 ~~~i~~~~~~ 86 (155)
T cd01849 77 ESAFTKQTNS 86 (155)
T ss_pred HHHHHHHhHH
Confidence 9999876543
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.51 E-value=6.8e-07 Score=64.68 Aligned_cols=99 Identities=17% Similarity=0.072 Sum_probs=64.4
Q ss_pred CCChh-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 027856 69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER 147 (217)
Q Consensus 69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 147 (217)
.||+. +........+.++|++++|+|++++..... ..+...+ .+.|+++|+||+|+.+... .....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence 35532 333445667889999999999987654221 1122222 2578999999999854211 1112122333
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 148 ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
.+..++.+||+++.|++++.+.+...+.
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 3456899999999999999999887764
No 365
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.49 E-value=2.2e-07 Score=75.84 Aligned_cols=56 Identities=23% Similarity=0.229 Sum_probs=46.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
.+.|++||.|||||||+||+|.|.....+. .|.|.+....++.+.. .+.|.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCc
Confidence 699999999999999999999999876555 6777777777776666 6789999993
No 366
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.2e-06 Score=68.36 Aligned_cols=174 Identities=18% Similarity=0.145 Sum_probs=104.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCc----------C---CCC-CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNE----------F---SLE-SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~----------~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
..+..+|+-+|+-..|||||-.+++.-. + +.. -....|++.....+.|.-....+-=.|+||+..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 3456899999999999999988766421 0 000 0113344444444544444456678999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC---CCHHHHHHHHHHcC---
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA---VSTEDATAFAEREN--- 149 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 149 (217)
-.....-..+.|+.|+|+.+.|..-.+.-+.++- .++ .+ -..+++.+||.|+.+..+ .-.-|++++...++
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL-ArQ-VG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHLLL-ARQ-VG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHHHH-HHH-cC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 8887777788899999999998654333222211 111 11 234778889999985332 22234455555554
Q ss_pred --CcEEEEecC---CCCCH---HHHHHHHHHHHHHHHhhhhhccC
Q 027856 150 --TFFMETSAL---ESMNV---ENAFTEVLTQIYRVVSRKALEIG 186 (217)
Q Consensus 150 --~~~~~~Sa~---~~~~i---~~~~~~i~~~~~~~~~~~~~~~~ 186 (217)
.+++.-||+ .|.+- .+....+++++-.+....+..++
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~ 252 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLD 252 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccC
Confidence 458887765 34321 23344555555554555555544
No 367
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.49 E-value=4.4e-06 Score=63.09 Aligned_cols=86 Identities=16% Similarity=0.012 Sum_probs=52.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCCCcccceeEeEEEEEEEC---CeEEEEEEEeCCChhhh------hhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRCD---DKIVKAQIWDTAGQERY------RAIT 79 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~Dt~G~~~~------~~~~ 79 (217)
.+..-|+|+|++++|||+|+|+|++. .+...... ..++......... +....+.++||+|.... ....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~-~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS-QQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC-CCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 45567999999999999999999998 65443321 1111112222111 23468999999994322 1112
Q ss_pred hhhhc--CCcEEEEEEECCC
Q 027856 80 SAYYR--GAVGALLVYDVTR 97 (217)
Q Consensus 80 ~~~~~--~~d~ii~v~d~~~ 97 (217)
...+. -++++||..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 22233 3788888877654
No 368
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.48 E-value=2.5e-06 Score=64.28 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=75.6
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHh----hcCCCCcEEEEEeCCCC
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-------TFENVERWLKELRD----HTDSNIVIMLVGNKADL 130 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~l~~----~~~~~~p~ivv~nK~D~ 130 (217)
+.++++|.+|+..-+..|.-++..+.++|||+..+... +-+.++.-+..+.. ..-..+.+|+.+||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 57899999999999999999999999999999988632 11222222222211 11236778999999998
Q ss_pred CCcc----------------------------CCC--HHHHHHHHHH-------------cCCcEEEEecCCCCCHHHHH
Q 027856 131 RHLR----------------------------AVS--TEDATAFAER-------------ENTFFMETSALESMNVENAF 167 (217)
Q Consensus 131 ~~~~----------------------------~~~--~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~~~ 167 (217)
..++ ..+ .-.++.+.+. +-+.+..+.|.+-++|+.+|
T Consensus 282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF 361 (379)
T KOG0099|consen 282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 361 (379)
T ss_pred HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence 4210 000 0111112111 23557788999999999999
Q ss_pred HHHHHHHHHH
Q 027856 168 TEVLTQIYRV 177 (217)
Q Consensus 168 ~~i~~~~~~~ 177 (217)
+..-+-++..
T Consensus 362 nDcrdiIqr~ 371 (379)
T KOG0099|consen 362 NDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHH
Confidence 9877666543
No 369
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.4e-07 Score=75.17 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=88.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC--------cCCCCC--------cccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN--------EFSLES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
....-+|+++.+-.+||||.-.|++-- ...... ....|++....-+.++++.+.+.++||||+.
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 345678999999999999999987642 111111 1134555666666777777899999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
.|+--.+.+++-.|+++.|+|++..-..+.+..|+.. ...++|-..++||+|...
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence 9998888999999999999999987655545555544 334789899999999743
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.46 E-value=2.9e-06 Score=67.22 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=79.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC------cc---------------cceeEeEEEEEEE-------------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES------KS---------------TIGVEFATRSIRC------------- 57 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~------~~---------------~~~~~~~~~~~~~------------- 57 (217)
..--|+++|++|+||||++..|.+....... .. -.+..+.......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999987763211100 00 0111111110000
Q ss_pred CCeEEEEEEEeCCChhh--------hhhhhhh----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 027856 58 DDKIVKAQIWDTAGQER--------YRAITSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~~~--------~~~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~ 125 (217)
....+.+.++||||... ....... .-...+..++|+|++... +.+... ...... -.+.-+|+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIl 266 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIIL 266 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEE
Confidence 11236899999999432 2221111 113467889999998543 222221 111111 12346899
Q ss_pred eCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 126 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
||.|.... .-.+.......+.++..++ +|++++++-
T Consensus 267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 99995432 2234555666788888888 667776653
No 371
>PRK12288 GTPase RsgA; Reviewed
Probab=98.44 E-value=4.9e-07 Score=72.41 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=35.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcCCCCC------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEFSLES------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 76 (217)
++++|.+|+|||||||+|++....... .....++.....+.+.+. ..++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 789999999999999999987542211 111112222333344332 2499999965543
No 372
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=1.9e-06 Score=65.40 Aligned_cols=116 Identities=26% Similarity=0.400 Sum_probs=69.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc----cceeEeEEEEEEECCeEEEEEEEeCCCh-------hhhh---
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIGVEFATRSIRCDDKIVKAQIWDTAGQ-------ERYR--- 76 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~--- 76 (217)
-..++|+-+|.+|.||||||..|++..+.....+ ..........+.-.+..++++++||.|. +.|.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 4579999999999999999999999888654433 2222222222333566789999999991 1110
Q ss_pred ----hhhhh-------------hh--cCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 77 ----AITSA-------------YY--RGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 77 ----~~~~~-------------~~--~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
+..+. .+ ..+++.+|.+..+... +..+.- .+..+. ....+|.|+-|.|..
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~-LKslDLvtmk~Ld----skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHS-LKSLDLVTMKKLD----SKVNIIPVIAKADTI 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcc-hhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence 11111 12 3557788888775432 322221 233333 255567778888854
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.41 E-value=1.1e-06 Score=61.57 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=52.5
Q ss_pred hhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEec
Q 027856 80 SAYYRGAVGALLVYDVTRHVTFE--NVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSA 157 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
...+..+|++++|+|+.++.+.. .+..++... . .++|+++|+||+|+..... ..+..+.....+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 34568899999999998876543 233333322 1 4789999999999864221 23344555566778999999
Q ss_pred CCCCC
Q 027856 158 LESMN 162 (217)
Q Consensus 158 ~~~~~ 162 (217)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98754
No 374
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.41 E-value=2.5e-06 Score=66.52 Aligned_cols=102 Identities=16% Similarity=0.053 Sum_probs=67.0
Q ss_pred CCChh-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 027856 69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER 147 (217)
Q Consensus 69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 147 (217)
.||+. .........+..+|++++|+|+..+.+... ..+...+ .+.|+++|+||+|+.+... .....+....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 36653 223445667889999999999987754322 1122222 2679999999999864211 1111222333
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 148 ENTFFMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
.+..++.+||.++.|+.++.+.+.+.+.+..
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 4567899999999999999999887775543
No 375
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.41 E-value=2.1e-05 Score=63.50 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=86.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC-----------------CCC-Ccccc-e-----eEeEEEEEEE-CCeEEEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF-----------------SLE-SKSTI-G-----VEFATRSIRC-DDKIVKAQ 65 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~-----------------~~~-~~~~~-~-----~~~~~~~~~~-~~~~~~~~ 65 (217)
...+=|+|||+--+||||||+||..... +.+ ...|+ + .......+.+ ++-.+++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 3457789999999999999999986422 111 11111 0 1111222333 46678999
Q ss_pred EEeCCCh-------------h------hh------hhhhh----hhh--cCCcEEEEEEECCC----hhhHHHH-HHHHH
Q 027856 66 IWDTAGQ-------------E------RY------RAITS----AYY--RGAVGALLVYDVTR----HVTFENV-ERWLK 109 (217)
Q Consensus 66 l~Dt~G~-------------~------~~------~~~~~----~~~--~~~d~ii~v~d~~~----~~s~~~~-~~~~~ 109 (217)
++|+.|- + +| ....+ ..+ +..=++++.-|.+= ++.+..+ +..+.
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 9999981 0 11 10000 011 12235666666542 3344444 45777
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856 110 ELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 110 ~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
+|... ++|+++++|-.+... ....+...++..+++++++++++..
T Consensus 175 ELk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 175 ELKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence 77766 899999999887543 3345666777888899988887765
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.38 E-value=2.8e-06 Score=60.60 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=37.2
Q ss_pred EEEEEEeCCChhhhhhhhhh--------hhcCCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856 62 VKAQIWDTAGQERYRAITSA--------YYRGAVGALLVYDVTRHVTF-ENVERWLKELRDHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 130 (217)
.+..++|++|...-...... ..-..+.+++++|+.+.... .....+..++.... ++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 57789999995322222211 23357889999998654321 12233445554332 679999995
No 377
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.38 E-value=4.1e-06 Score=66.29 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=87.3
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----------------CCcccceeEeEEEEEEE-------------
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----------------ESKSTIGVEFATRSIRC------------- 57 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~------------- 57 (217)
.......++|+|+|.-.+|||||+-.|+...++. +...|........-++.
T Consensus 127 ~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~ 206 (641)
T KOG0463|consen 127 TEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGH 206 (641)
T ss_pred CCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCC
Confidence 3445567999999999999999998776543311 11111111111111111
Q ss_pred --------CCeEEEEEEEeCCChhhhhhhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027856 58 --------DDKIVKAQIWDTAGQERYRAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127 (217)
Q Consensus 58 --------~~~~~~~~l~Dt~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 127 (217)
.+..-.++|+|.+|++.|....-.-+ +-.|.-++++-++...-- ....-+..... -..|+++|.+|
T Consensus 207 ~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiG-mTKEHLgLALa---L~VPVfvVVTK 282 (641)
T KOG0463|consen 207 NLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIG-MTKEHLGLALA---LHVPVFVVVTK 282 (641)
T ss_pred cccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccccee-ccHHhhhhhhh---hcCcEEEEEEe
Confidence 12223678999999999987654333 345777777776543211 01111111122 27899999999
Q ss_pred CCCCCccCCCHHH---HH--------------------------HHHHHcCCcEEEEecCCCCCHHH
Q 027856 128 ADLRHLRAVSTED---AT--------------------------AFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 128 ~D~~~~~~~~~~~---~~--------------------------~~~~~~~~~~~~~Sa~~~~~i~~ 165 (217)
+|+-... +..+- +. .|..+.-+++|.+|..+|+|+.-
T Consensus 283 IDMCPAN-iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L 348 (641)
T KOG0463|consen 283 IDMCPAN-ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL 348 (641)
T ss_pred eccCcHH-HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH
Confidence 9985421 11111 11 11122336789999999999754
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.36 E-value=5.8e-06 Score=65.85 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=54.6
Q ss_pred EEEEEEeCCChhhhh----hhhhhh--hcCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856 62 VKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDVTRHVT-FENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 134 (217)
+.+.|+||+|..... .....+ ..+.|.+++|+|+..... .+.+..+...+ + .--+|+||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~-~~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------G-IDGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------C-CCEEEEeeecCCCC-
Confidence 478999999953211 111111 235788999999866432 22122222211 2 23688999997542
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 135 AVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
.-.+...+...+.++.+++ +|.+++++...
T Consensus 295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 2224445556688888877 67888776443
No 379
>PRK12289 GTPase RsgA; Reviewed
Probab=98.36 E-value=7.3e-07 Score=71.47 Aligned_cols=55 Identities=24% Similarity=0.200 Sum_probs=34.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcCCCCC------cccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEFSLES------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
++++|.+|+|||||||+|++....... .....++.....+...+.. .|+||||..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~ 235 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFN 235 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence 799999999999999999976432211 1101122333334343322 699999954
No 380
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.36 E-value=9.7e-07 Score=71.33 Aligned_cols=57 Identities=25% Similarity=0.406 Sum_probs=38.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCC----CCCcccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFS----LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
.+++++|.+|+|||||+|+|++.... .......+++.....+..++ .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 48999999999999999999985421 11222334444455555433 34799999943
No 381
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=7.6e-07 Score=72.04 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcC----CCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEF----SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
.++.++|.+|+|||||||+|++... ........|++.....+..++. ..++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 4799999999999999999996531 1111233344455555555443 379999995
No 382
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.34 E-value=7.9e-07 Score=68.77 Aligned_cols=58 Identities=26% Similarity=0.193 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC------CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF------SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
-.+++|++|+|||||+|+|.+... +........++.....+.+.+.. .++||||..++
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 468999999999999999997422 22222222333445555554322 49999996544
No 383
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.34 E-value=1e-06 Score=67.44 Aligned_cols=57 Identities=23% Similarity=0.179 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCC------CcccceeEeEEEEEEECCeEEEEEEEeCCChhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLE------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
-.++++|.+|+|||||+|+|++...... ......++.....+...+ ..++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence 3679999999999999999998643221 111111222233333333 26999999543
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.32 E-value=6.9e-06 Score=66.53 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=61.8
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH----HHHc
Q 027856 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF----AERE 148 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~ 148 (217)
+.+.............+++|+|+.+.. ..|...+..... +.|+++|+||+|+... ....+++..+ +...
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 345554444433334899999997743 234444444332 6789999999999652 3333333333 4455
Q ss_pred CC---cEEEEecCCCCCHHHHHHHHHHH
Q 027856 149 NT---FFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 149 ~~---~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999998654
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.31 E-value=1e-05 Score=62.83 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=54.7
Q ss_pred EEEEEEEeCCChhhhhhh--------hhh----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027856 61 IVKAQIWDTAGQERYRAI--------TSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~--------~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 128 (217)
.+.+.++||||....... ... .-...|.+++|+|++... +.+... ..+.+.. .+.-+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~-~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQA-KVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHH-HHHHhhC---CCCEEEEEcc
Confidence 368899999995432211 111 112478999999997532 222221 2222211 1346889999
Q ss_pred CCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 129 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
|.... .-.+.......+.++.+++ +|++++++-
T Consensus 228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 97542 2334455556678888877 666666653
No 386
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=4.6e-06 Score=75.42 Aligned_cols=156 Identities=23% Similarity=0.229 Sum_probs=83.2
Q ss_pred EEEcCCCCCHHHHHHHHhhCcCCC--CCccc--ceeEeEEEEEEECCeEEEEEEEeCCC----h----hhhhhhhhhh--
Q 027856 17 VLIGDSGVGKSNLLSRFTRNEFSL--ESKST--IGVEFATRSIRCDDKIVKAQIWDTAG----Q----ERYRAITSAY-- 82 (217)
Q Consensus 17 ~v~G~~~~GKSsli~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G----~----~~~~~~~~~~-- 82 (217)
+|+|++|+||||++.. .+..|+. ..... .+.........+.+ ...++||.| + +.....|..+
T Consensus 129 ~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 129 MVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred EEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 7999999999999864 3332221 11110 00000111222233 557999999 1 2233445544
Q ss_pred -------hcCCcEEEEEEECCChhh---------HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHH--HH
Q 027856 83 -------YRGAVGALLVYDVTRHVT---------FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT--AF 144 (217)
Q Consensus 83 -------~~~~d~ii~v~d~~~~~s---------~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~--~~ 144 (217)
.+..|+||+.+|+++.-+ ...++.-+.++.+......|+.+++||.|+....+.-..... +-
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~r 284 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEER 284 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCHHHH
Confidence 257799999999976322 122334455666666678999999999998653211000000 11
Q ss_pred HHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856 145 AERENTFFMETSALESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 145 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 177 (217)
..-+| -.|...+....+....+..-.+.+.++
T Consensus 285 ~qvwG-~tf~~~~~~~~~~~~~~~~e~~~L~~r 316 (1188)
T COG3523 285 EQVWG-VTFPLDARRNANLAAELEQEFRLLLDR 316 (1188)
T ss_pred hhhce-eccccccccccchHHHHHHHHHHHHHH
Confidence 11122 245666666645555544444444433
No 387
>PRK01889 GTPase RsgA; Reviewed
Probab=98.29 E-value=4e-06 Score=67.66 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=59.9
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-HcCCcEEEEecCCCC
Q 027856 83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-RENTFFMETSALESM 161 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 161 (217)
..++|.+++|+++........++.++..+... +++.++|+||+|+.+.. .+....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997555555666676666554 67788999999997531 111222222 346789999999999
Q ss_pred CHHHHHHHHH
Q 027856 162 NVENAFTEVL 171 (217)
Q Consensus 162 ~i~~~~~~i~ 171 (217)
|++++..++-
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888763
No 388
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.28 E-value=7.2e-06 Score=67.13 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh------CcCCCCCc---------------ccceeEeEEEEEEEC-------------
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTR------NEFSLESK---------------STIGVEFATRSIRCD------------- 58 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~------~~~~~~~~---------------~~~~~~~~~~~~~~~------------- 58 (217)
+.-|+++|.+|+||||++..|.. ........ .-.+..+.......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 46789999999999999998763 11110000 011111111110001
Q ss_pred CeEEEEEEEeCCChhhhh----hhhhhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 59 DKIVKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
...+.+.|+||+|..... .....+ ....+-+++|+|+.....-. .....+... -.+.-+|+||.|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC
Confidence 124688999999943221 111111 23567899999987553322 122222221 234578899999743
No 389
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.26 E-value=6.4e-06 Score=64.63 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=67.0
Q ss_pred CCChhh-hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 027856 69 TAGQER-YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER 147 (217)
Q Consensus 69 t~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 147 (217)
.||+.. ........+..+|++++|+|+..+.+... .++..+. .+.|+++|+||+|+.+... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 567542 23345667789999999999987754322 1222222 1689999999999864211 1122222334
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856 148 ENTFFMETSALESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 177 (217)
.+..++.+|+.++.|++++.+.+...+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 466789999999999999999888776554
No 390
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.25 E-value=1.2e-06 Score=69.59 Aligned_cols=66 Identities=24% Similarity=0.432 Sum_probs=51.9
Q ss_pred CCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856 2 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 2 ~~~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
+++.+...-...++++|+|.|++||||+||+|......... .+.|.+..-..+..+. .+.|.|.||
T Consensus 241 gny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 241 GNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred cCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCc
Confidence 45566666778899999999999999999999998876555 5556666555655554 778999999
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=2.5e-05 Score=63.00 Aligned_cols=142 Identities=14% Similarity=0.076 Sum_probs=71.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCC-C--CcccceeEeE------------------EEEEEE---------CCeEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL-E--SKSTIGVEFA------------------TRSIRC---------DDKIV 62 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~-~--~~~~~~~~~~------------------~~~~~~---------~~~~~ 62 (217)
.-.++++|++|+||||++..|....... . .....+.+.+ ...... .-...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3478899999999999999987642211 0 0000011110 000000 01124
Q ss_pred EEEEEeCCChhhhhh----hhhhh--hcCCcEEEEEEECCCh-hhHHHHHHHHHHHHhh-cCC-CCcEEEEEeCCCCCCc
Q 027856 63 KAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDVTRH-VTFENVERWLKELRDH-TDS-NIVIMLVGNKADLRHL 133 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~-~s~~~~~~~~~~l~~~-~~~-~~p~ivv~nK~D~~~~ 133 (217)
.+.++||+|...... ....+ .....-.++|++++.. .....+-.-+...... ... ..+--+|+||.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 889999999542221 11111 1223456788887654 3333332222222110 000 012357789999644
Q ss_pred cCCCHHHHHHHHHHcCCcEEEEecC
Q 027856 134 RAVSTEDATAFAERENTFFMETSAL 158 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
..=.+..+....+.++.+++.-
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt~G 317 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVSTG 317 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEecC
Confidence 3444566677777776555543
No 392
>PRK13695 putative NTPase; Provisional
Probab=98.20 E-value=6.8e-05 Score=54.37 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=43.9
Q ss_pred hhhcCCcEEEEEEEC---CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEec
Q 027856 81 AYYRGAVGALLVYDV---TRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSA 157 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~---~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..+..+++ +++|- .+..+ ..+...+......+.|++++.+|... ...........+..+++++
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~- 157 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELT- 157 (174)
T ss_pred hccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEc-
Confidence 34456676 56772 22222 22334444433447899999987432 2234445555667777774
Q ss_pred CCCCCHHHHHHHHHHHH
Q 027856 158 LESMNVENAFTEVLTQI 174 (217)
Q Consensus 158 ~~~~~i~~~~~~i~~~~ 174 (217)
.+|-+++...+++.+
T Consensus 158 --~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 158 --PENRDSLPFEILNRL 172 (174)
T ss_pred --chhhhhHHHHHHHHH
Confidence 446667777777644
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.19 E-value=3.7e-05 Score=56.82 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCC---------------------cccceeEeEEEEEE-------------ECC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES---------------------KSTIGVEFATRSIR-------------CDD 59 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~~~ 59 (217)
--|+++|++|+||||.+-+|......... ....+......... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 35899999999999998877653211100 00122221111100 001
Q ss_pred eEEEEEEEeCCChhhhh----hhhhhhh--cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 60 KIVKAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVT-FENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
..+.+.|+||+|..... .....++ ...+-+++|++++.... .+.+..++..+ +. --+|+||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~------~~-~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF------GI-DGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS------ST-CEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc------cC-ceEEEEeecCCC
Confidence 12468999999943221 1111111 25677889999876542 22222222221 12 247799999644
Q ss_pred ccCCCHHHHHHHHHHcCCcEEEEec
Q 027856 133 LRAVSTEDATAFAERENTFFMETSA 157 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+..+....+.++-.++.
T Consensus 155 ----~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 155 ----RLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp ----TTHHHHHHHHHHTSEEEEEES
T ss_pred ----CcccceeHHHHhCCCeEEEEC
Confidence 334466677777777666554
No 394
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=4.7e-06 Score=69.53 Aligned_cols=116 Identities=21% Similarity=0.196 Sum_probs=80.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCc-----CCC-------------CCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNE-----FSL-------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
...-+|.+.-+-.+||||+-++.+-.. +.. .....++++....+.. +..+.++++||||+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~--w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT--WRDYRINIIDTPGH 114 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee--eccceeEEecCCCc
Confidence 356789999999999999999876421 111 1111223333333333 33689999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
..|.--.+..++-.|+.++++++...-..+....|...-+ + ++|.+..+||+|...
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r-y---~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR-Y---NVPRICFINKMDRMG 170 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh-c---CCCeEEEEehhhhcC
Confidence 9888777888888999999999877654444444554433 3 899999999999754
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.14 E-value=4.6e-06 Score=65.36 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc------ccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK------STIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
-.++++|++|+|||||+|.|++........ ....++.....+...+. ..++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 468999999999999999999865432211 11112222333434322 259999996544
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=7.7e-05 Score=62.51 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=71.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCC--------CCccc---------------ceeEeEEEEEE------E-CCeEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL--------ESKST---------------IGVEFATRSIR------C-DDKIV 62 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~--------~~~~~---------------~~~~~~~~~~~------~-~~~~~ 62 (217)
.-.|+++|++|+||||++..|...-... ....+ .+.......-. . .-..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4578999999999999998877531100 00000 11111100000 0 01236
Q ss_pred EEEEEeCCChhhhhhh----hhh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856 63 KAQIWDTAGQERYRAI----TSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 136 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 136 (217)
.+.|+||+|....... ... ... ....++|++.... ..++...+..+.. ..+.-+|+||+|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~---- 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG---- 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----
Confidence 8899999995322111 000 111 2245667776532 3333333443332 235678999999733
Q ss_pred CHHHHHHHHHHcCCcEEEEecCC
Q 027856 137 STEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
..-.+.......+.++.+++.-.
T Consensus 499 ~lG~aLsv~~~~~LPI~yvt~GQ 521 (559)
T PRK12727 499 RFGSALSVVVDHQMPITWVTDGQ 521 (559)
T ss_pred chhHHHHHHHHhCCCEEEEeCCC
Confidence 34556667777777766666443
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.10 E-value=6.4e-05 Score=54.42 Aligned_cols=82 Identities=16% Similarity=0.032 Sum_probs=44.8
Q ss_pred EEEEEEeCCChhhh----hhhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 62 VKAQIWDTAGQERY----RAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
..+.++|++|.... ......+. ...+.+++|+|+..... ...+...+.... + ..-+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~-- 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR-- 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence 46889999996321 11111111 34899999999865432 122333333222 2 24677899997542
Q ss_pred CCHHHHHHHHHHcCCcEE
Q 027856 136 VSTEDATAFAERENTFFM 153 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ 153 (217)
...+...+...+.++.
T Consensus 155 --~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 155 --GGAALSIRAVTGKPIK 170 (173)
T ss_pred --cchhhhhHHHHCcCeE
Confidence 2223335566665543
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=98.10 E-value=6.8e-06 Score=64.78 Aligned_cols=57 Identities=25% Similarity=0.194 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc------cceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS------TIGVEFATRSIRCDDKIVKAQIWDTAGQE 73 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
-.++++|++|+|||||+|+|++........- ...++.....+...+. ..++||||..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~ 227 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS 227 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence 3589999999999999999998654321111 0011222233333332 3699999954
No 399
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.10 E-value=1.9e-05 Score=58.82 Aligned_cols=63 Identities=21% Similarity=0.156 Sum_probs=39.3
Q ss_pred EEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 130 (217)
.+.++||-.. ..+.-+....++|.+|.|+|.+-. ++...+...+...+.. -.++.+|+||+|-
T Consensus 135 e~VivDtEAG--iEHfgRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAG--IEHFGRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccc--hhhhccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccc
Confidence 4556666322 233344566889999999998654 3444444444333331 3789999999995
No 400
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.09 E-value=1.4e-05 Score=59.38 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=76.1
Q ss_pred eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh----------HHHHHHHHHHHH-hhcCCCCcEEEEEeCC
Q 027856 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT----------FENVERWLKELR-DHTDSNIVIMLVGNKA 128 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s----------~~~~~~~~~~l~-~~~~~~~p~ivv~nK~ 128 (217)
..+.+.+.|.+|+..-+..|.+++.++-.+++++.++..+. .++...++..+. ...-.+.++|+..||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 34567788999988888888888888877777776654321 111122222221 1222578899999999
Q ss_pred CCCCcc----------------CCCHHHHHHHHHH----cC------CcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 129 DLRHLR----------------AVSTEDATAFAER----EN------TFFMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 129 D~~~~~----------------~~~~~~~~~~~~~----~~------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
|+.+++ ..+.+.+++|... .+ +.-..++|.+-+|++-+|..+-+.+++..
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 986532 2233444445433 11 12456788889999999999888877654
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=0.00012 Score=59.33 Aligned_cols=135 Identities=17% Similarity=0.158 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCC---------------------CcccceeEeEEEEEE---------EC-CeE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLE---------------------SKSTIGVEFATRSIR---------CD-DKI 61 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~---------~~-~~~ 61 (217)
.-.|+++|++|+||||++..|........ +....+.......-. .. ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 35799999999999999998864211000 000111111110000 00 012
Q ss_pred EEEEEEeCCChhhhh----hhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 62 VKAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
+.+.|+||+|..... .....++ ...+.+++|+|++... .++...+..+... + .--+|+||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~---~-idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI---H-IDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC---C-CCEEEEEcccCCC---
Confidence 588999999953211 1112222 2356788888875332 2223333333321 2 2357899999754
Q ss_pred CCHHHHHHHHHHcCCcEEEEec
Q 027856 136 VSTEDATAFAERENTFFMETSA 157 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..=.+...+...+.++..++.
T Consensus 392 -k~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEeC
Confidence 233355666777777655554
No 402
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.06 E-value=9.1e-05 Score=59.73 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=78.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccc---ceeEeEEEE---------------EE--E----------CCeEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKST---IGVEFATRS---------------IR--C----------DDKIV 62 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~---------------~~--~----------~~~~~ 62 (217)
.=-|++||++|+||||-+..|...-.-...... ++++.+..- +. . .-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 456899999999999998877665431111011 111111100 00 0 01113
Q ss_pred EEEEEeCCChhhhh----hhhhhhhcCC--cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856 63 KAQIWDTAGQERYR----AITSAYYRGA--VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 136 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~----~~~~~~~~~~--d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 136 (217)
.+.|+||.|...+. .-...++..+ .-+.+|++++.. .+++...+..+... +.. -+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~i~-~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---PID-GLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---Ccc-eeEEEcccccC----
Confidence 88999999954332 2233333322 335556666543 33444455544432 222 36789999533
Q ss_pred CHHHHHHHHHHcCCcEEEEecCC--CCCHHH-HHHHHHHHHHHHH
Q 027856 137 STEDATAFAERENTFFMETSALE--SMNVEN-AFTEVLTQIYRVV 178 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~-~~~~i~~~~~~~~ 178 (217)
+.=.+-....+.+.++-.++--. .+++.. --.++++.+....
T Consensus 353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 44555666666666655554333 333322 1234555554433
No 403
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.05 E-value=2.9e-05 Score=55.93 Aligned_cols=134 Identities=20% Similarity=0.259 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeC-CCh---------------------
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT-AGQ--------------------- 72 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~--------------------- 72 (217)
+|.+.|.+|+|||||+++++........ +..| +....+.-++..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~-~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGL-PVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCG-GEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCC-ccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999998865421111 1112 22333334555566666666 331
Q ss_pred -hhhhhh----hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCccCCCHHHHHHHHH
Q 027856 73 -ERYRAI----TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA-DLRHLRAVSTEDATAFAE 146 (217)
Q Consensus 73 -~~~~~~----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~ 146 (217)
+.+... ....+..+| ++++|=--+--+ ....|.+.+......+.|++.++-+. +. ...+++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 112211 111124555 566663222100 01345555555555688888887766 32 12555667
Q ss_pred HcCCcEEEEecCCCCC
Q 027856 147 RENTFFMETSALESMN 162 (217)
Q Consensus 147 ~~~~~~~~~Sa~~~~~ 162 (217)
+.++.+++++..+...
T Consensus 147 ~~~~~i~~vt~~NRd~ 162 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDA 162 (168)
T ss_dssp TTTSEEEE--TTTCCC
T ss_pred CCCcEEEEeChhHHhh
Confidence 7788888887775443
No 404
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.04 E-value=0.00011 Score=58.30 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=52.0
Q ss_pred EEEEEEeCCChhhhhhhhhhh--------hcCCcEEEEEEECCChhhHHH-H-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 62 VKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDVTRHVTFEN-V-ERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~s~~~-~-~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
....++++.|...-......+ .-..|+++-|+|+.+-..... . +....++.... +|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccCC
Confidence 466788888832211111111 124588999999977544322 2 23444443322 7999999998
Q ss_pred CccCCCHHHHHHHHHHcC--CcEEEEecC
Q 027856 132 HLRAVSTEDATAFAEREN--TFFMETSAL 158 (217)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 158 (217)
+... .+..+...+..+ +.++.++..
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence 7442 455566666654 557777773
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=0.00016 Score=59.32 Aligned_cols=136 Identities=17% Similarity=0.121 Sum_probs=71.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-----------------------cceeEeEEEEEE-------ECCeEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-----------------------TIGVEFATRSIR-------CDDKIV 62 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~-------~~~~~~ 62 (217)
.-.|+++|++|+||||++..|.+......... ..+.......-. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999998876421000000 001110000000 000113
Q ss_pred EEEEEeCCChhhh----hhhhhhhh--cCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 63 KAQIWDTAGQERY----RAITSAYY--RGAVGALLVYDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 63 ~~~l~Dt~G~~~~----~~~~~~~~--~~~d~ii~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
.+.++||+|.... ......+. ....-.++|+|++. ..... .++..+... + .--+|+||.|...
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~~---~-~~~~I~TKlDEt~--- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQGH---G-IHGCIITKVDEAA--- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcCC---C-CCEEEEEeeeCCC---
Confidence 7789999994321 11122221 22345778888874 33333 333333221 2 2357899999644
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCC
Q 027856 136 VSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
..=.+..+....+.++..++.-.
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt~Gq 363 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVTNGQ 363 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEECCC
Confidence 34446667777788866666433
No 406
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.02 E-value=4.4e-05 Score=53.82 Aligned_cols=58 Identities=17% Similarity=0.066 Sum_probs=35.7
Q ss_pred EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 129 (217)
.+.+.|+||+|.. .....++..+|-++++...+-.+....+.. ..+. . .=++++||.|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~-~-----~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA--GIME-I-----ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh-h-----cCEEEEeCCC
Confidence 3688999998844 222347888999999987763333222111 1121 1 1278899987
No 407
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.90 E-value=6e-06 Score=60.16 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=43.3
Q ss_pred EEEEEEeCCChhhhhhh-----hhhhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 62 VKAQIWDTAGQERYRAI-----TSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~-----~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
....++++.|...-..+ ...-.-..+.++.|+|+.+-........ +..++.... ++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh-
Confidence 46778888884332222 0111235688999999977543333433 444443322 7899999987643
Q ss_pred CCHHHHHHHHHHc
Q 027856 136 VSTEDATAFAERE 148 (217)
Q Consensus 136 ~~~~~~~~~~~~~ 148 (217)
...+..++..+..
T Consensus 158 ~~i~~~~~~ir~l 170 (178)
T PF02492_consen 158 QKIERVREMIREL 170 (178)
T ss_dssp --HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 2234455555553
No 408
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.89 E-value=0.00019 Score=59.35 Aligned_cols=136 Identities=19% Similarity=0.106 Sum_probs=69.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----------CCcc-----------cceeEeEEEEEEEC-----------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----------ESKS-----------TIGVEFATRSIRCD----------- 58 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----------~~~~-----------~~~~~~~~~~~~~~----------- 58 (217)
..+..|+++|.+|+||||++..|...-... .+.+ ..+..........+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999988775421100 0000 01111111100000
Q ss_pred CeEEEEEEEeCCChhhhhhh----hh--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 59 DKIVKAQIWDTAGQERYRAI----TS--AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
-....+.++||+|....... .. .....+|.+++|+|++... + .......+.... + ..-+|+||.|...
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~-av~~a~~F~~~l--~-i~gvIlTKlD~~a 246 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--Q-AKNQAKAFHEAV--G-IGGIIITKLDGTA 246 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--H-HHHHHHHHHhcC--C-CCEEEEecccCCC
Confidence 01137899999995432211 11 1133578899999987653 1 112222222211 1 2357889999643
Q ss_pred ccCCCHHHHHHHHHHcCCcEEEEe
Q 027856 133 LRAVSTEDATAFAERENTFFMETS 156 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~S 156 (217)
. .=.+.......+.++.+++
T Consensus 247 ~----~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 K----GGGALSAVAETGAPIKFIG 266 (437)
T ss_pred c----ccHHHHHHHHHCcCEEEEe
Confidence 1 2234455556666655544
No 409
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.89 E-value=3.2e-05 Score=56.63 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.+-+.|+|+.||||||+.+.+...
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h 26 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEH 26 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHH
Confidence 467899999999999999988764
No 410
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.89 E-value=0.00012 Score=56.85 Aligned_cols=89 Identities=16% Similarity=0.044 Sum_probs=63.7
Q ss_pred hhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856 80 SAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL 158 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
+.-+.+.|-+++|+++.+|. ++..+..++-..... ++..+|++||+|+.+..+...++........+...+.+|++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence 33444567777777777765 555566666655543 67778889999998754433345666777789999999999
Q ss_pred CCCCHHHHHHHHH
Q 027856 159 ESMNVENAFTEVL 171 (217)
Q Consensus 159 ~~~~i~~~~~~i~ 171 (217)
++.++.++...+.
T Consensus 151 ~~~~~~~l~~~l~ 163 (301)
T COG1162 151 NGDGLEELAELLA 163 (301)
T ss_pred CcccHHHHHHHhc
Confidence 9999998877654
No 411
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.88 E-value=8e-05 Score=51.92 Aligned_cols=107 Identities=17% Similarity=0.150 Sum_probs=61.3
Q ss_pred EEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC
Q 027856 17 VLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 17 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
..-|.+|+|||++.-.+...-- .....+.-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3457899999999665443211 1111111111110 001111688999999843 333456788899999999875
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 97 RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 97 ~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
..++......++.+.... ...++.+|+|+.+..
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 444444444455554332 355778999999753
No 412
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=0.00037 Score=57.59 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=49.3
Q ss_pred EEEEEEeCCChhhhh----hhhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856 62 VKAQIWDTAGQERYR----AITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 134 (217)
+.+.|+||+|..... .....++. ...-+++|++++.. ...+...+..+... + +--+|+||.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 588999999953221 12222333 23456777787543 22233333333321 2 2258899999643
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCC
Q 027856 135 AVSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
..-.+..+....+.++..++.-.
T Consensus 372 --~~G~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEeCCC
Confidence 33456777778888876666543
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=0.00088 Score=56.01 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc--------cc---------------ceeEeEEEEEEE-------CCeEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK--------ST---------------IGVEFATRSIRC-------DDKIVK 63 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~---------------~~~~~~~~~~~~-------~~~~~~ 63 (217)
--++++|++|+||||++..|.+........ .+ .+.......-.. .-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 458999999999999999888643111000 00 000000000000 001236
Q ss_pred EEEEeCCChhhhh---hhhhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856 64 AQIWDTAGQERYR---AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 137 (217)
Q Consensus 64 ~~l~Dt~G~~~~~---~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~ 137 (217)
+.++||+|..... ......+.. ..-.++|+|+.... ..+......+.. ....-+|+||.|... .
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~----~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA----S 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc----c
Confidence 7899999932211 111111211 22367888876432 222222222222 223357789999643 3
Q ss_pred HHHHHHHHHHcCCcEEEEecCC
Q 027856 138 TEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
.-.+.......+.++.+++.-.
T Consensus 407 ~G~~l~i~~~~~lPI~yvt~GQ 428 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVSNGQ 428 (484)
T ss_pred chHHHHHHHHHCCCeEEEecCC
Confidence 4456667777788866665433
No 414
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00046 Score=55.71 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=71.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCC----------C-----------cccceeEeEEEEEE---------EC-Ce
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLE----------S-----------KSTIGVEFATRSIR---------CD-DK 60 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------~-----------~~~~~~~~~~~~~~---------~~-~~ 60 (217)
..-.|+++|++|+||||++..+........ + ....+..+....-. .. ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 345689999999999999998765211000 0 00111111100000 00 02
Q ss_pred EEEEEEEeCCChhhhh----hhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856 61 IVKAQIWDTAGQERYR----AITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~----~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 134 (217)
.+.+.|+||+|..... .....+.. ..+.+++|.++... ..++...+..+.. -.+--+|+||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~----l~i~glI~TKLDET~-- 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE----IPIDGFIITKMDETT-- 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc----CCCCEEEEEcccCCC--
Confidence 3588999999963221 11122222 34666777765322 2233333332221 123357899999643
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCC
Q 027856 135 AVSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
..=.+...+...+.++..++.-.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt~GQ 379 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMTDGQ 379 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEecCC
Confidence 33446667777787766666433
No 415
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.83 E-value=0.00018 Score=47.34 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=49.8
Q ss_pred EEEEc-CCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 16 VVLIG-DSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 16 I~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
|++.| ..|+||||+...+...-.. ...+ ...+..+.. +.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56666 6699999998766543321 1111 112222222 688999999854322 2366777999999988
Q ss_pred CCChhhHHHHHHHHH
Q 027856 95 VTRHVTFENVERWLK 109 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~ 109 (217)
.+ ..+...+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 74 445555555544
No 416
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.82 E-value=0.0003 Score=55.92 Aligned_cols=95 Identities=11% Similarity=0.090 Sum_probs=50.4
Q ss_pred EEEEEEeCCChhhhhhhhhhhhc--------CCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 62 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDVTRHVTF-ENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
....++++.|...-..+...++. ..++++.|+|+.+.... +.......++... + +|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D---~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---D---RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---C---EEEEeccccCC
Confidence 45678999995443333333321 24789999998754321 1111222333322 1 78999999876
Q ss_pred ccCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHH
Q 027856 133 LRAVSTEDATAFAEREN--TFFMETSALESMNVENAF 167 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~ 167 (217)
. .+.+.+..+..+ +.++.++ ........+|
T Consensus 165 ~----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 E----AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred H----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 3 244555555543 4455544 2223444444
No 417
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.80 E-value=3.5e-05 Score=59.62 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=40.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----CCcccceeEeEEEE-EEECCeEEEEEEEeCCC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----ESKSTIGVEFATRS-IRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G 71 (217)
...+++.|+|-||+|||||||++...+... ......|.+..+.. +.+.... .+.+.||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCC
Confidence 356899999999999999999877654322 22233444444444 3443332 588999999
No 418
>PRK10867 signal recognition particle protein; Provisional
Probab=97.78 E-value=0.00077 Score=55.71 Aligned_cols=86 Identities=16% Similarity=0.021 Sum_probs=46.4
Q ss_pred EEEEEEeCCChhhh----hhhhhhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 62 VKAQIWDTAGQERY----RAITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
+.+.|+||+|.... -.....+ .-..+.+++|+|+.... ++......+.... + ..-+|+||.|.....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~rg- 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDARG- 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence 57899999994321 1111111 12567789999986542 2222333333211 2 235778999964321
Q ss_pred CCHHHHHHHHHHcCCcEEEEec
Q 027856 136 VSTEDATAFAERENTFFMETSA 157 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
-.+.......+.|+.+++.
T Consensus 257 ---G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ---GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 2255566666777555543
No 419
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.76 E-value=0.00015 Score=41.75 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=31.2
Q ss_pred cCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856 84 RGAVGALLVYDVTR--HVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 84 ~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 129 (217)
+-.++++|++|++. +.+.++-..++.+++.... ++|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 44688999999986 4567776778888888774 899999999998
No 420
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.76 E-value=0.0006 Score=56.28 Aligned_cols=86 Identities=17% Similarity=0.033 Sum_probs=47.9
Q ss_pred EEEEEEeCCChhhh----hhhhhh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 62 VKAQIWDTAGQERY----RAITSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~----~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
+.+.|+||+|.... -..... ..-..+.+++|+|+.... +.......+.... + ..-+|+||.|....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~~-- 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDAR-- 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCccc--
Confidence 57899999994221 111111 123568889999987543 2333333333222 2 23577999996432
Q ss_pred CCHHHHHHHHHHcCCcEEEEec
Q 027856 136 VSTEDATAFAERENTFFMETSA 157 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
.-.+.......+.|+.+++.
T Consensus 255 --~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 --GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 22256666677777555543
No 421
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00044 Score=56.58 Aligned_cols=136 Identities=20% Similarity=0.212 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc-CCCC---------------------CcccceeEeEEEE-E-----EECCeEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE-FSLE---------------------SKSTIGVEFATRS-I-----RCDDKIVKAQ 65 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~-~~~~---------------------~~~~~~~~~~~~~-~-----~~~~~~~~~~ 65 (217)
.-|+++|++||||||++..|.... .... +....+....... . ......+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999887532 1000 0001111111100 0 0011235789
Q ss_pred EEeCCChhhh----hhhhhhhhc-----CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856 66 IWDTAGQERY----RAITSAYYR-----GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 136 (217)
Q Consensus 66 l~Dt~G~~~~----~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 136 (217)
++||+|.... ...+..++. ...-.++|+|++... +.+...+...... + +--+|+||.|...
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~---~-~~glIlTKLDEt~---- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL---N-YRRILLTKLDEAD---- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC---C-CCEEEEEcccCCC----
Confidence 9999995321 111122221 234577888887653 1222222222211 2 2357899999643
Q ss_pred CHHHHHHHHHHcCCcEEEEecCC
Q 027856 137 STEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
..=.+.......+.++..++.-.
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~GQ 396 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSVGQ 396 (432)
T ss_pred CccHHHHHHHHHCCCEEEEecCC
Confidence 23335666777777766655443
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.001 Score=58.40 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-c----------------------cceeEeEEEEEEE--------CCeEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK-S----------------------TIGVEFATRSIRC--------DDKIV 62 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~----------------------~~~~~~~~~~~~~--------~~~~~ 62 (217)
--|+++|+.|+||||.+..|.+........ . ..+....... .. .-...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-~~~~l~~al~~~~~~ 264 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-DAADLRFALAALGDK 264 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-CHHHHHHHHHHhcCC
Confidence 357999999999999999888643111000 0 0111110000 00 01124
Q ss_pred EEEEEeCCChhh----hhhhhhhh--hcCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 63 KAQIWDTAGQER----YRAITSAY--YRGAVGALLVYDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 63 ~~~l~Dt~G~~~----~~~~~~~~--~~~~d~ii~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
.+.|+||+|... .......+ ....+-.++|+|++. ...+.++ ...+......+ +--+|+||.|...
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~-i~glIlTKLDEt~--- 337 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGED-VDGCIITKLDEAT--- 337 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCC-CCEEEEeccCCCC---
Confidence 789999999321 11111111 123456788888864 3333333 23332211001 2357899999644
Q ss_pred CCHHHHHHHHHHcCCcEEEEecC
Q 027856 136 VSTEDATAFAERENTFFMETSAL 158 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
..=.+..+....+.++.+++.-
T Consensus 338 -~~G~iL~i~~~~~lPI~yit~G 359 (767)
T PRK14723 338 -HLGPALDTVIRHRLPVHYVSTG 359 (767)
T ss_pred -CccHHHHHHHHHCCCeEEEecC
Confidence 2333556677777776666543
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.71 E-value=0.00044 Score=44.45 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=45.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-hhhhhcCCcEEEEEEE
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYD 94 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d 94 (217)
+++.|..|+||||+...+........+ .. .. ++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~v-------~~--~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK-RV-------LL--ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-eE-------EE--EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887755422111 11 11 11 7789999985432221 2445667899999988
Q ss_pred CCChh
Q 027856 95 VTRHV 99 (217)
Q Consensus 95 ~~~~~ 99 (217)
.+...
T Consensus 68 ~~~~~ 72 (99)
T cd01983 68 PEALA 72 (99)
T ss_pred Cchhh
Confidence 76543
No 424
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00019 Score=59.14 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=83.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC------------CCC----CcccceeEeEEEEEEE--------------CCe
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF------------SLE----SKSTIGVEFATRSIRC--------------DDK 60 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~------------~~~----~~~~~~~~~~~~~~~~--------------~~~ 60 (217)
.+.-++.|+.+-..|||||-..|...-- ... ....+++......+.+ ++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 3456788999999999999998876311 000 0111111111122111 344
Q ss_pred EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-ccCCCHH
Q 027856 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH-LRAVSTE 139 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-~~~~~~~ 139 (217)
.+.++++|.||+..|.+-....++-.|+.++|+|+-+.--.+.-..+...+.+. -+| ++++||.|..- +-+++.+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkP-vlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKP-VLVMNKMDRALLELQLSQE 172 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccc-eEEeehhhHHHHhhcCCHH
Confidence 578999999999999998888999999999999988764333222344444432 344 58899999632 2345666
Q ss_pred HHHHHHHH
Q 027856 140 DATAFAER 147 (217)
Q Consensus 140 ~~~~~~~~ 147 (217)
++-+..++
T Consensus 173 eLyqtf~R 180 (842)
T KOG0469|consen 173 ELYQTFQR 180 (842)
T ss_pred HHHHHHHH
Confidence 66554443
No 425
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00021 Score=57.02 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc---------------------ccceeEeEEEEEEE-------------CC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK---------------------STIGVEFATRSIRC-------------DD 59 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~~ 59 (217)
-=|.++|..|+||||.+-.|........+. .-.++.++..+... ..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 347899999999999987766421111110 01222233322211 23
Q ss_pred eEEEEEEEeCCChhhhh-hhhhh-----hhcCCcEEEEEEECCChhhHHHHHH
Q 027856 60 KIVKAQIWDTAGQERYR-AITSA-----YYRGAVGALLVYDVTRHVTFENVER 106 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~-~~~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~ 106 (217)
+.+.+.|+||+|...-. ++.+. -.-+.|-+|+|.|++-....+....
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 34799999999943221 12211 1235789999999998776554433
No 426
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00038 Score=52.45 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=71.4
Q ss_pred eeEEEEEcCCCC--CHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 13 LFKVVLIGDSGV--GKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 13 ~~~I~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
.+-++|+|.+|+ ||.+|+.+|....|.........+.+...++........+.+.-.+--+++.--.........+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 456789999999 999999999988776555444444444444433222223333322221222212222334557899
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLR 131 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~ 131 (217)
++||.+....+..+..|+.--... ... .+-++||.|.+
T Consensus 84 mvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrv 122 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRV 122 (418)
T ss_pred EEEeccchhhhHHHHhhccccccc---cchhheecccccccc
Confidence 999999999999888887753321 222 34567999964
No 427
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.0013 Score=53.64 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCC----------CC---------------cccceeEeEEEEEE-------ECCe
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL----------ES---------------KSTIGVEFATRSIR-------CDDK 60 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~----------~~---------------~~~~~~~~~~~~~~-------~~~~ 60 (217)
+-.|+++|++|+||||.+..|....... .. ..-.+......... -.-.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4578999999999999998776421100 00 00111111111100 0012
Q ss_pred EEEEEEEeCCChhhhh----hhhhhhhcC--Cc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856 61 IVKAQIWDTAGQERYR----AITSAYYRG--AV-GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~----~~~~~~~~~--~d-~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 133 (217)
.+.+.++||+|..... .-...++.. .+ -.++|+|++... ..+...+...... -+--+|+||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence 3588999999943211 111222222 12 578888987652 2333333333221 12357899999643
Q ss_pred cCCCHHHHHHHHHHcCCcEEEEec
Q 027856 134 RAVSTEDATAFAERENTFFMETSA 157 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..=.+..+....+.++..++.
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit~ 347 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVTD 347 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEeC
Confidence 333455666777777655554
No 428
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.63 E-value=2e-05 Score=62.84 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh--hhhhhhhhcCCc
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY--RAITSAYYRGAV 87 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~d 87 (217)
....|.|+++|.|++||||+||+|-...+.... |..|.+..-.++.... .+-|+|+||..-- .+-....++
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPGvVyps~dset~ivLk--- 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPGVVYPSSDSETDIVLK--- 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCCccCCCCCchHHHHhh---
Confidence 345799999999999999999999998876554 3333333222222222 6679999993211 122233333
Q ss_pred EEEEEEECCChh
Q 027856 88 GALLVYDVTRHV 99 (217)
Q Consensus 88 ~ii~v~d~~~~~ 99 (217)
+++=|=.+.+++
T Consensus 377 GvVRVenv~~pe 388 (572)
T KOG2423|consen 377 GVVRVENVKNPE 388 (572)
T ss_pred ceeeeeecCCHH
Confidence 345555566654
No 429
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.62 E-value=0.00037 Score=46.18 Aligned_cols=100 Identities=20% Similarity=0.123 Sum_probs=58.0
Q ss_pred EcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh
Q 027856 19 IGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH 98 (217)
Q Consensus 19 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 98 (217)
=+..|+||||+...|...-.......+.-.+ .+.... ..+.++|+|+.... .....+..+|.++++.+.+ .
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-----~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVD-----LDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-----CCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence 4567899999876655432211011111111 111111 17899999985432 3345678899999998864 4
Q ss_pred hhHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 027856 99 VTFENVERWLKELRDHTDS-NIVIMLVGNK 127 (217)
Q Consensus 99 ~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK 127 (217)
.+...+..+++.+...... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4556666677766655433 4456677775
No 430
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.0018 Score=50.18 Aligned_cols=134 Identities=17% Similarity=0.154 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCC---------------------CCcccceeEeEEEEEE---------E-CCeEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSL---------------------ESKSTIGVEFATRSIR---------C-DDKIV 62 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~---------~-~~~~~ 62 (217)
-+|+++|++|+||||++..+....... .+....+.......-. . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 689999999999999988775531100 0000111111110000 0 01136
Q ss_pred EEEEEeCCChhhhh----hhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856 63 KAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 136 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 136 (217)
.+.++||+|..... ..+..++ ...+-+++|+|++... +++..++..+.. -.+--+|+||.|...
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~---- 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA---- 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence 88999999954211 1111122 2456788999986432 222333333332 122357899999754
Q ss_pred CHHHHHHHHHHcCCcEEEEec
Q 027856 137 STEDATAFAERENTFFMETSA 157 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+...+...+.++..++.
T Consensus 226 ~~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 226 SSGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred CccHHHHHHHHHCcCEEEEeC
Confidence 233355666677777666554
No 431
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.59 E-value=0.00082 Score=46.48 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.-.+++.|++|+|||+|++.+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999887654
No 432
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.54 E-value=0.00096 Score=53.65 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~ 36 (217)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999864
No 433
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.52 E-value=8.8e-05 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999865
No 434
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.48 E-value=9.8e-05 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.754 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
++|+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999987
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.48 E-value=0.0001 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.730 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.+|+|+|.+|+|||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998654
No 436
>PRK08118 topology modulation protein; Reviewed
Probab=97.47 E-value=0.00011 Score=52.98 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.+|+|+|++|||||||.+.|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999988654
No 437
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.44 E-value=0.0034 Score=45.64 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEE--EeCCC-hhhhhhhhhhhhcCCcEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI--WDTAG-QERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~Dt~G-~~~~~~~~~~~~~~~d~ii 90 (217)
=.++++|+.|+|||||++.+.+...+... .+.+++..+.+.. .+.+| +.....+...++.+.++++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-----------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGD-----------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCc-----------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 36899999999999999998876532221 1112222111111 11444 3334456667777776555
Q ss_pred EE--EECCChhhHHHHHHHHHHHH
Q 027856 91 LV--YDVTRHVTFENVERWLKELR 112 (217)
Q Consensus 91 ~v--~d~~~~~s~~~~~~~~~~l~ 112 (217)
+= .+.-|+.+.+.+..++..+.
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHH
Confidence 41 11223444454555555543
No 438
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.43 E-value=0.00028 Score=52.65 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=25.1
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++.....-|+|+|++|||||||++.|....
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 3455566778899999999999999997653
No 439
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.42 E-value=0.00087 Score=46.14 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
--|++.|+.|+|||||++.+....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999988764
No 440
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.0005 Score=52.39 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|+|||||++.++|-.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999943
No 441
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00029 Score=56.51 Aligned_cols=158 Identities=17% Similarity=0.113 Sum_probs=92.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcC-------------------CCCC----c------ccceeEeEEEEEEECCe
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF-------------------SLES----K------STIGVEFATRSIRCDDK 60 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~-------------------~~~~----~------~~~~~~~~~~~~~~~~~ 60 (217)
....+++.++|+-.+||||+-..++...- ...| . ..-+-+.......+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 35579999999999999998776554200 0000 0 01112222222223333
Q ss_pred EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh---hHHHHHHHH--HHHHhhcCCCCcEEEEEeCCCCCCcc-
Q 027856 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVERWL--KELRDHTDSNIVIMLVGNKADLRHLR- 134 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~--~~l~~~~~~~~p~ivv~nK~D~~~~~- 134 (217)
.-.+++.|+||+..|....-.-..++|..++|+++...+ .|+.--+.. ..+... ..-...|+++||+|-...+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCccCc
Confidence 458899999999988877777778899999998885422 122211111 111111 1235578899999975422
Q ss_pred -CCCHHHH----HHHHHHcC------CcEEEEecCCCCCHHHHHH
Q 027856 135 -AVSTEDA----TAFAEREN------TFFMETSALESMNVENAFT 168 (217)
Q Consensus 135 -~~~~~~~----~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 168 (217)
....++. ..+.+..+ ..++++|..+|.++.+.-+
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1122222 23333222 3499999999999887654
No 442
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.42 E-value=0.0044 Score=44.77 Aligned_cols=84 Identities=13% Similarity=0.008 Sum_probs=50.7
Q ss_pred EEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHH
Q 027856 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT 142 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 142 (217)
.+.++|+|+.... .....+..+|.++++++.+.. +...+..+++.+... ......+++|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence 6899999985332 234456789999999887643 444455555655542 13456789999986432 1122233
Q ss_pred HHHHHcCCcEE
Q 027856 143 AFAERENTFFM 153 (217)
Q Consensus 143 ~~~~~~~~~~~ 153 (217)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44444565544
No 443
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.42 E-value=0.012 Score=42.06 Aligned_cols=143 Identities=10% Similarity=0.060 Sum_probs=97.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+....-.|+++|..+.++..|..+++..... . ...++.... .. .|. + ....=..+|.
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~------~-----~l~Vh~a~s-LP-----Lp~--e----~~~lRprIDl 67 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDKE------F-----KLKVHLAKS-LP-----LPS--E----NNNLRPRIDL 67 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhccc------e-----eEEEEEecc-CC-----Ccc--c----ccCCCceeEE
Confidence 4456789999999999999999999863211 1 111111000 00 011 0 1112356899
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
|+|++|.....|++.++.-+..+....--++-++++.| ....+.-.+...+..+++..+.++++.+.-....+...+-+
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~-a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATN-AGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcC-CCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 99999999999999988877777655444665555544 44444356788999999999999999999888877777777
Q ss_pred HHHHHHH
Q 027856 169 EVLTQIY 175 (217)
Q Consensus 169 ~i~~~~~ 175 (217)
.+++.+.
T Consensus 147 RLL~~lq 153 (176)
T PF11111_consen 147 RLLRMLQ 153 (176)
T ss_pred HHHHHHH
Confidence 7776554
No 444
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.40 E-value=0.0016 Score=50.90 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------------
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ--------------- 72 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------------- 72 (217)
++.....+++++|++|.|||+++++|...+..... .. ...+.+..+.+|..
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-ED-------------AERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CC-------------CccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 45566788999999999999999999987643221 11 11235556666551
Q ss_pred ---------hhhhhhhhhhhcCCcEEEEEEECC-C--hhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027856 73 ---------ERYRAITSAYYRGAVGALLVYDVT-R--HVTFENVERWLKELRDHTD-SNIVIMLVGNKA 128 (217)
Q Consensus 73 ---------~~~~~~~~~~~~~~d~ii~v~d~~-~--~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~ 128 (217)
..........++...+=++++|-- + ..+....+.+++.+..... -.+|++.|+++-
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 111222334566777778888843 2 1233333444444443322 378888888753
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.00014 Score=50.75 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
|+++|+||||||||++.+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999988443
No 446
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.00078 Score=54.77 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=61.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC----------CCCcc-----------cceeEeEEEEEEE-----------
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS----------LESKS-----------TIGVEFATRSIRC----------- 57 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~----------~~~~~-----------~~~~~~~~~~~~~----------- 57 (217)
...+..|+++|..|+||||.+-.|...... ..|.| ..+.+++......
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 345788999999999999987765542110 01111 1112221110000
Q ss_pred --CCeEEEEEEEeCCChhhhhh-hhh-----hhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCC
Q 027856 58 --DDKIVKAQIWDTAGQERYRA-ITS-----AYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKA 128 (217)
Q Consensus 58 --~~~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~ 128 (217)
....+.+.|+||+|...... +.. .-.-+.|=+++|+|+.-.+.-..... +-+.+ .. .-+|+||.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l-~i------tGvIlTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL-GI------TGVILTKL 249 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc-CC------ceEEEEcc
Confidence 11125899999999432221 111 12246788999999987764433322 33332 22 14667777
Q ss_pred CCC
Q 027856 129 DLR 131 (217)
Q Consensus 129 D~~ 131 (217)
|-.
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred cCC
Confidence 753
No 447
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.36 E-value=0.00022 Score=42.00 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
..++.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998664
No 448
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.35 E-value=0.0023 Score=46.46 Aligned_cols=85 Identities=26% Similarity=0.234 Sum_probs=59.3
Q ss_pred eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH
Q 027856 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE 139 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 139 (217)
..+.+.++|||+.... .....+..+|.+++++..+.. +...+..+++.+... +.++.+|+||.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 4578999999975322 334466889999999998743 555566666666543 5678899999997432 345
Q ss_pred HHHHHHHHcCCcEE
Q 027856 140 DATAFAERENTFFM 153 (217)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (217)
++.++.+..+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 66777777777654
No 449
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.32 E-value=0.00025 Score=43.05 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
|++.|.+|+||||+.+.|...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999988664
No 450
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.31 E-value=0.00037 Score=52.04 Aligned_cols=68 Identities=19% Similarity=0.107 Sum_probs=36.9
Q ss_pred EEEEEeCCChhhhhhh----h--hhhhcCCcEEEEE---EEC---CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856 63 KAQIWDTAGQERYRAI----T--SAYYRGAVGALLV---YDV---TRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~----~--~~~~~~~d~ii~v---~d~---~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 130 (217)
...++|+||+.++... + ...+.+.+.=+.+ +|. ++|..+- ..++-.+.....-..|-+-|++|+|+
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhHH
Confidence 6789999997543211 1 1122334443333 332 3555443 23333333333347888899999998
Q ss_pred CC
Q 027856 131 RH 132 (217)
Q Consensus 131 ~~ 132 (217)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 53
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.0002 Score=54.00 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
|+++|++|||||||++-+.|-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999888654
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.26 E-value=0.00018 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999866
No 453
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.25 E-value=0.0002 Score=61.97 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=77.6
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeE--------------------------------------
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-------------------------------------- 49 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-------------------------------------- 49 (217)
......+.|+|+|..++||||.++.+.|..|.+......+-.
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 345667899999999999999999999966533221110000
Q ss_pred ---------------eEEEEEEE-CCeEEEEEEEeCCCh-------------hhhhhhhhhhhcCCcEEEEEEECCChhh
Q 027856 50 ---------------FATRSIRC-DDKIVKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDVTRHVT 100 (217)
Q Consensus 50 ---------------~~~~~~~~-~~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s 100 (217)
....++.+ .-.-..++++|.||. .....+...++...+.+|+.+...+-+
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d- 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD- 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-
Confidence 00111111 011136789999992 234556677888888888887766522
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 101 FENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
+. -..++....+....+..++-|++|.|+.+
T Consensus 183 ~a-ts~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 183 IA-TSPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred hh-cCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 11 13456666666666778888899999865
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.23 E-value=0.0019 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
|+|+|++||||||+++.+++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987754
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.22 E-value=0.0003 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++|+|+.|+|||||++.+.+...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 579999999999999999887653
No 456
>PRK10646 ADP-binding protein; Provisional
Probab=97.20 E-value=0.0035 Score=44.18 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-|++-|+-|+|||||++.+....
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999987653
No 457
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.19 E-value=0.0051 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++.|++||||||-++.|....
T Consensus 113 LLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhh
Confidence 5788999999999999888643
No 458
>PRK06217 hypothetical protein; Validated
Probab=97.17 E-value=0.00039 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.+|+|+|.+|||||||.++|....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999988653
No 459
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0042 Score=50.91 Aligned_cols=28 Identities=32% Similarity=0.460 Sum_probs=23.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
+..-+|+|||+.|+|||||+.-|++..-
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCCC
Confidence 3456899999999999999999988643
No 460
>PRK01889 GTPase RsgA; Reviewed
Probab=97.16 E-value=0.00048 Score=55.71 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
-.++++|.+|+|||||++.+++...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999998643
No 461
>PRK04195 replication factor C large subunit; Provisional
Probab=97.16 E-value=0.012 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-.+++.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999998754
No 462
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.16 E-value=0.0094 Score=41.74 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=38.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh-hhhhhhhhhhcCCcEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-RYRAITSAYYRGAVGALL 91 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~~~~~~~~~~d~ii~ 91 (217)
.++++|+.|+|||||++.+.+...+. .| .+.+++...-..+...++.+ ..-.+...++.+.+++++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~-----~G------~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPD-----EG------IVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC-----ce------EEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 56899999999999999998865321 11 12223321111122244433 333556667777765444
No 463
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00026 Score=51.03 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
..-+++.|++|+|||||+++|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458999999999999999999876
No 464
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.15 E-value=0.00037 Score=52.27 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
-++|+|++|||||||++-+-+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 379999999999999998776543
No 465
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.14 E-value=0.0027 Score=44.25 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
--|++-|+-|+|||||.+.+...--
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHcC
Confidence 3478999999999999999887644
No 466
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.13 E-value=0.00041 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
|+|.|.+||||||+++.|....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988763
No 467
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.13 E-value=0.0004 Score=50.93 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.=|+|+|++|||||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999998764
No 468
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00043 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+|+++|.|||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988765
No 469
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.12 E-value=0.0013 Score=44.57 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcC--CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEF--SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
--|++-|+-|+|||||++.+....- ....+||...-..... -...-+.+-++=..+.++.......-+-..+++++
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~--~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~ 93 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEG--GNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICV 93 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEE--TTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecC--CCceEEEeeccccCCHHHHHHCCchhhhCCCCEEE
Confidence 3489999999999999998876432 1334455443221111 11222344444444444433332122222355655
Q ss_pred E
Q 027856 92 V 92 (217)
Q Consensus 92 v 92 (217)
|
T Consensus 94 I 94 (123)
T PF02367_consen 94 I 94 (123)
T ss_dssp E
T ss_pred E
Confidence 5
No 470
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.12 E-value=0.00048 Score=48.05 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.|+|+|+.|+|||||++.|++...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987653
No 471
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.11 E-value=0.00046 Score=48.00 Aligned_cols=21 Identities=57% Similarity=0.858 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~ 36 (217)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 472
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00061 Score=50.42 Aligned_cols=24 Identities=50% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++++|++|||||||++.+.+-..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 479999999999999998876553
No 473
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.09 E-value=0.0005 Score=47.02 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999988654
No 474
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.09 E-value=0.00055 Score=46.95 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLE 41 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~ 41 (217)
-.++++|++|+|||+++..+........
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 4689999999999999999987765443
No 475
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.08 E-value=0.0049 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
=+++.|++|+||||.++.|....
T Consensus 47 iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45779999999999999888653
No 476
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.0038 Score=44.32 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-.++++|+.|+|||||++.+.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999998765
No 477
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.06 E-value=0.00056 Score=51.88 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=23.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-+..++++|+|.+|||||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 455789999999999999999988854
No 478
>PRK14530 adenylate kinase; Provisional
Probab=97.04 E-value=0.00057 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.+|+|+|+|||||||+.+.|...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988753
No 479
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.04 E-value=0.0081 Score=49.70 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=37.2
Q ss_pred hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 129 (217)
.+....|++++.+|+ =..+.--|..+++.++..+......++.+++|-.|.+
T Consensus 150 EIlKaLyr~a~iLIL-DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 150 EILKALYRGARLLIL-DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHhcCCCEEEE-cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 456677888886554 1233334577788888888888778999999988865
No 480
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.03 E-value=0.0006 Score=49.97 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.|+++|++|+|||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997653
No 481
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.03 E-value=0.00057 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.|+|+|++|||||||++.|....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999987753
No 482
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.03 E-value=0.00081 Score=50.19 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+...-|+|+|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999875
No 483
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.016 Score=45.85 Aligned_cols=141 Identities=15% Similarity=0.197 Sum_probs=75.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc------c---------------cceeEeEEEE-------EEE------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK------S---------------TIGVEFATRS-------IRC------ 57 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~------~---------------~~~~~~~~~~-------~~~------ 57 (217)
.++-|+++|-.|+||||-|-.|.......... . -.+.+..... +-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 47889999999999999988766532111100 0 0111111110 000
Q ss_pred CCeEEEEEEEeCCCh--------hhhhhhhhhhhcCC-----cEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEE
Q 027856 58 DDKIVKAQIWDTAGQ--------ERYRAITSAYYRGA-----VGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIML 123 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~~-----d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iv 123 (217)
....+.+.|+||+|. ++...+.+ ..... +-+++++|+.... +++.++.+-+.+. . --+
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~r-V~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-l------~Gi 289 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVR-VIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-L------DGI 289 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHH-HhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-C------ceE
Confidence 112368999999993 22222221 22222 4488888988765 3444444333332 2 258
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 124 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
|+||.|-...-.+ +...+...+.|+.++.- |++++++
T Consensus 290 IlTKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 290 ILTKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred EEEecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence 8999996432222 34466777888666653 3344444
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.01 E-value=0.00059 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
|+|.|++|||||||++.|.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987754
No 485
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.01 E-value=0.00079 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
....|+|.|.+|||||||.+.|.+.-
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999988753
No 486
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.00 E-value=0.013 Score=46.02 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~ 34 (217)
--|+|.|.+||||||+++.|-
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999984
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.98 E-value=0.00071 Score=44.66 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~ 34 (217)
--++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999875
No 488
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00058 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
...++|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4578999999999999999999884
No 489
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.97 E-value=0.0053 Score=43.96 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++++|+.|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999988653
No 490
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.96 E-value=0.00077 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.|+++|++|+|||+|++.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999877544
No 491
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.96 E-value=0.00069 Score=49.24 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-|+|+|++|||||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47999999999999999998853
No 492
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.96 E-value=0.00077 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-.++++|++|+|||||++.+++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999988754
No 493
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.96 E-value=0.0092 Score=44.89 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=61.8
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN--VERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 139 (217)
+.+.|+|+.|..... ....+..+|.+|+=.-.+..+.-+. .-.|+..+.......+|.-|+.|++.-... .....
T Consensus 84 ~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~-~~~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARL-TRAQR 160 (231)
T ss_pred CCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchh-hHHHH
Confidence 578999999854332 3345567898888665554332222 234555555555678999999999874321 11112
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 140 DATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 140 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
.+.++.. +++++.+.-....-+.++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2223332 47788888877666666665
No 494
>PRK13949 shikimate kinase; Provisional
Probab=96.95 E-value=0.00083 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+|+|+|++|+||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987764
No 495
>PRK14532 adenylate kinase; Provisional
Probab=96.94 E-value=0.00077 Score=49.41 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
++|+++|+|||||||+..+|...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 496
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.00072 Score=48.17 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~ 34 (217)
++|+|.|.||+||||+.++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999887
No 497
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.93 E-value=0.00084 Score=48.43 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
=.++|+|++|+|||||+|-+.|=..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 3689999999999999998887554
No 498
>PRK08233 hypothetical protein; Provisional
Probab=96.92 E-value=0.00079 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
+-|+|.|.+|||||||.++|....
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 668899999999999999998653
No 499
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.92 E-value=0.00076 Score=49.28 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
.-|+++|.+||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999884
No 500
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00078 Score=50.48 Aligned_cols=21 Identities=48% Similarity=0.719 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999887
Done!