Query 027856
Match_columns 217
No_of_seqs 144 out of 1849
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 03:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.2E-44 1.4E-48 267.5 19.6 179 1-179 1-179 (216)
2 3cpj_B GTP-binding protein YPT 100.0 1.3E-38 4.6E-43 239.5 19.3 215 1-215 1-223 (223)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 1E-36 3.4E-41 226.5 24.2 176 9-184 4-179 (206)
4 2bov_A RAla, RAS-related prote 100.0 2.3E-36 7.9E-41 224.2 23.3 172 8-180 9-181 (206)
5 2ew1_A RAS-related protein RAB 100.0 9.5E-35 3.2E-39 215.2 23.4 173 8-180 21-193 (201)
6 2bme_A RAB4A, RAS-related prot 100.0 1.9E-34 6.6E-39 210.6 23.8 175 7-181 4-178 (186)
7 2a5j_A RAS-related protein RAB 100.0 1.8E-34 6E-39 212.0 23.6 174 7-180 15-188 (191)
8 1vg8_A RAS-related protein RAB 100.0 8.1E-35 2.8E-39 216.1 21.5 173 10-183 5-182 (207)
9 2hup_A RAS-related protein RAB 100.0 1.2E-34 4E-39 214.7 22.0 172 7-178 23-195 (201)
10 1z0f_A RAB14, member RAS oncog 100.0 2E-34 6.9E-39 209.0 22.4 169 8-176 10-178 (179)
11 2fu5_C RAS-related protein RAB 100.0 6.9E-35 2.4E-39 212.5 20.0 172 10-181 5-176 (183)
12 3tkl_A RAS-related protein RAB 100.0 4.3E-34 1.5E-38 210.4 24.5 172 9-180 12-183 (196)
13 2oil_A CATX-8, RAS-related pro 100.0 5.2E-34 1.8E-38 209.7 23.6 172 8-179 20-191 (193)
14 2gf9_A RAS-related protein RAB 100.0 6.1E-34 2.1E-38 208.7 23.8 170 9-178 18-187 (189)
15 3tw8_B RAS-related protein RAB 100.0 7.8E-34 2.7E-38 206.2 23.5 172 9-181 5-176 (181)
16 1zbd_A Rabphilin-3A; G protein 100.0 1.1E-33 3.7E-38 209.6 24.6 172 9-180 4-175 (203)
17 2efe_B Small GTP-binding prote 100.0 7.9E-34 2.7E-38 206.4 22.3 169 9-177 8-176 (181)
18 2o52_A RAS-related protein RAB 100.0 5.2E-34 1.8E-38 211.0 21.6 172 10-181 22-193 (200)
19 1z08_A RAS-related protein RAB 100.0 3.7E-34 1.3E-38 206.0 19.9 166 10-175 3-168 (170)
20 3kkq_A RAS-related protein M-R 100.0 1.4E-33 4.7E-38 205.6 22.5 168 8-176 13-182 (183)
21 2il1_A RAB12; G-protein, GDP, 100.0 6.3E-34 2.2E-38 209.2 20.4 169 8-176 21-190 (192)
22 1r2q_A RAS-related protein RAB 100.0 1.7E-33 5.9E-38 202.3 22.2 164 11-174 4-167 (170)
23 2g6b_A RAS-related protein RAB 100.0 1.8E-33 6E-38 204.3 22.3 170 8-177 5-175 (180)
24 3bc1_A RAS-related protein RAB 100.0 2.8E-33 9.7E-38 205.4 23.7 175 6-180 4-189 (195)
25 1z0j_A RAB-22, RAS-related pro 100.0 3.1E-33 1.1E-37 201.1 23.2 164 11-174 4-167 (170)
26 3dz8_A RAS-related protein RAB 100.0 1.2E-34 4.2E-39 212.8 15.9 170 9-178 19-188 (191)
27 1g16_A RAS-related protein SEC 100.0 8.9E-34 3E-38 203.9 19.6 165 12-177 2-166 (170)
28 2f7s_A C25KG, RAS-related prot 100.0 1.3E-33 4.4E-38 211.3 21.1 173 8-180 20-203 (217)
29 2fg5_A RAB-22B, RAS-related pr 100.0 1.3E-33 4.3E-38 207.6 20.4 168 9-176 19-186 (192)
30 1ek0_A Protein (GTP-binding pr 100.0 2.5E-33 8.4E-38 201.5 21.5 163 12-174 2-167 (170)
31 2nzj_A GTP-binding protein REM 100.0 3E-33 1E-37 202.1 21.6 169 11-180 2-173 (175)
32 4dsu_A GTPase KRAS, isoform 2B 100.0 6.1E-33 2.1E-37 202.9 23.4 169 11-181 2-171 (189)
33 1z2a_A RAS-related protein RAB 100.0 1.6E-33 5.4E-38 202.2 19.8 165 11-176 3-167 (168)
34 3cph_A RAS-related protein SEC 100.0 6E-33 2.1E-37 206.9 23.4 172 8-180 15-186 (213)
35 2fn4_A P23, RAS-related protei 100.0 4.5E-33 1.5E-37 202.2 22.1 170 8-178 4-174 (181)
36 2y8e_A RAB-protein 6, GH09086P 100.0 2E-33 6.8E-38 203.7 20.0 165 11-175 12-176 (179)
37 3t5g_A GTP-binding protein RHE 100.0 2.8E-33 9.5E-38 203.6 20.0 168 10-178 3-171 (181)
38 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.1E-32 3.8E-37 199.6 23.1 167 9-176 3-174 (177)
39 3cbq_A GTP-binding protein REM 100.0 1.7E-33 5.9E-38 207.5 18.7 169 9-177 19-189 (195)
40 1z06_A RAS-related protein RAB 100.0 6E-33 2.1E-37 203.4 21.4 165 11-175 18-187 (189)
41 2p5s_A RAS and EF-hand domain 100.0 2E-33 6.7E-38 207.7 18.1 167 9-175 24-196 (199)
42 2gf0_A GTP-binding protein DI- 100.0 1.6E-33 5.5E-38 207.8 17.3 164 10-175 5-170 (199)
43 3q85_A GTP-binding protein REM 100.0 4.8E-33 1.7E-37 200.0 19.2 165 13-177 2-168 (169)
44 3c5c_A RAS-like protein 12; GD 100.0 4.5E-33 1.5E-37 203.9 19.3 164 10-175 18-185 (187)
45 3ihw_A Centg3; RAS, centaurin, 100.0 1.8E-32 6.3E-37 200.2 22.4 164 8-178 15-182 (184)
46 1x3s_A RAS-related protein RAB 100.0 2E-32 6.7E-37 201.3 22.4 169 8-177 10-179 (195)
47 2hxs_A RAB-26, RAS-related pro 100.0 2.6E-33 9E-38 203.0 17.4 166 11-176 4-173 (178)
48 3q3j_B RHO-related GTP-binding 100.0 5.8E-33 2E-37 207.5 19.5 170 7-178 21-205 (214)
49 3clv_A RAB5 protein, putative; 100.0 3.5E-32 1.2E-36 201.2 23.4 165 11-178 5-206 (208)
50 3oes_A GTPase rhebl1; small GT 100.0 3.4E-33 1.2E-37 206.7 17.7 170 8-178 19-189 (201)
51 2a9k_A RAS-related protein RAL 100.0 2.4E-32 8.2E-37 199.3 21.8 171 8-179 13-184 (187)
52 3q72_A GTP-binding protein RAD 100.0 1.7E-32 5.7E-37 196.7 20.3 163 13-177 2-165 (166)
53 3reg_A RHO-like small GTPase; 100.0 2.1E-32 7.2E-37 201.3 21.3 167 9-177 19-189 (194)
54 1ky3_A GTP-binding protein YPT 100.0 1E-32 3.5E-37 200.4 19.1 169 10-178 5-180 (182)
55 1u8z_A RAS-related protein RAL 100.0 2.9E-32 9.8E-37 195.4 21.1 163 12-175 3-166 (168)
56 2iwr_A Centaurin gamma 1; ANK 100.0 4.1E-32 1.4E-36 196.9 21.7 164 11-181 5-174 (178)
57 2q3h_A RAS homolog gene family 100.0 3.4E-32 1.2E-36 201.2 21.2 170 9-180 16-199 (201)
58 2yc2_C IFT27, small RAB-relate 100.0 5.6E-33 1.9E-37 206.2 17.0 171 11-181 18-197 (208)
59 2j0v_A RAC-like GTP-binding pr 100.0 5.9E-33 2E-37 207.0 16.5 167 11-179 7-183 (212)
60 1kao_A RAP2A; GTP-binding prot 100.0 4E-32 1.4E-36 194.5 20.0 163 13-176 3-166 (167)
61 1c1y_A RAS-related protein RAP 100.0 4.2E-32 1.4E-36 194.6 20.0 162 13-175 3-166 (167)
62 2g3y_A GTP-binding protein GEM 100.0 6E-32 2E-36 201.2 21.3 168 9-177 33-204 (211)
63 2atv_A RERG, RAS-like estrogen 100.0 5.2E-32 1.8E-36 199.5 20.7 167 10-178 25-193 (196)
64 2atx_A Small GTP binding prote 100.0 8.2E-32 2.8E-36 198.0 21.3 166 8-175 13-192 (194)
65 3con_A GTPase NRAS; structural 100.0 3.3E-31 1.1E-35 194.1 22.9 169 9-179 17-186 (190)
66 1m7b_A RND3/RHOE small GTP-bin 100.0 1E-31 3.6E-36 196.0 19.2 163 11-175 5-182 (184)
67 1gwn_A RHO-related GTP-binding 100.0 1.2E-31 4.1E-36 199.1 19.5 166 9-176 24-204 (205)
68 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.6E-31 5.4E-36 194.9 19.2 163 11-175 3-179 (186)
69 4djt_A GTP-binding nuclear pro 100.0 4.4E-32 1.5E-36 203.1 16.4 172 8-179 6-178 (218)
70 2gco_A H9, RHO-related GTP-bin 100.0 5.7E-31 1.9E-35 194.8 21.6 164 11-176 23-200 (201)
71 2j1l_A RHO-related GTP-binding 100.0 2.1E-31 7.1E-36 199.0 19.4 166 11-178 32-211 (214)
72 2f9l_A RAB11B, member RAS onco 100.0 1.7E-30 5.8E-35 191.9 23.6 171 11-181 3-173 (199)
73 2erx_A GTP-binding protein DI- 100.0 2.5E-31 8.6E-36 191.3 18.5 162 12-174 2-165 (172)
74 3gj0_A GTP-binding nuclear pro 100.0 4.8E-32 1.6E-36 203.4 15.2 172 5-179 7-178 (221)
75 3l0i_B RAS-related protein RAB 100.0 3.9E-34 1.3E-38 211.5 3.4 166 10-175 30-195 (199)
76 2ce2_X GTPase HRAS; signaling 100.0 1.6E-30 5.3E-35 185.9 21.5 161 13-175 3-164 (166)
77 3t1o_A Gliding protein MGLA; G 100.0 6.8E-32 2.3E-36 198.6 14.7 170 7-180 8-196 (198)
78 2fv8_A H6, RHO-related GTP-bin 100.0 1.4E-30 4.7E-35 193.6 21.3 164 11-176 23-200 (207)
79 2cjw_A GTP-binding protein GEM 100.0 1.8E-30 6E-35 190.9 21.3 167 11-178 4-174 (192)
80 3bwd_D RAC-like GTP-binding pr 100.0 1.5E-31 5E-36 194.5 13.0 163 11-175 6-180 (182)
81 4gzl_A RAS-related C3 botulinu 100.0 1.2E-30 4.1E-35 193.5 18.1 163 10-174 27-203 (204)
82 4bas_A ADP-ribosylation factor 100.0 1.1E-30 3.6E-35 192.6 17.1 166 7-178 11-191 (199)
83 1oix_A RAS-related protein RAB 100.0 4.6E-29 1.6E-33 183.1 21.9 167 8-174 24-190 (191)
84 2h57_A ADP-ribosylation factor 100.0 1.5E-29 5.2E-34 185.4 18.3 161 10-176 18-187 (190)
85 1ksh_A ARF-like protein 2; sma 100.0 7.9E-29 2.7E-33 180.8 20.2 160 11-177 16-181 (186)
86 1zd9_A ADP-ribosylation factor 100.0 2.8E-29 9.5E-34 183.8 17.7 160 11-176 20-185 (188)
87 1r8s_A ADP-ribosylation factor 100.0 4E-30 1.4E-34 183.9 12.5 156 14-176 1-162 (164)
88 1upt_A ARL1, ADP-ribosylation 100.0 1.3E-29 4.4E-34 182.3 14.9 159 11-176 5-169 (171)
89 1f6b_A SAR1; gtpases, N-termin 100.0 1.9E-29 6.6E-34 186.2 16.0 156 11-173 23-196 (198)
90 1m2o_B GTP-binding protein SAR 100.0 5.5E-29 1.9E-33 182.6 18.0 156 11-173 21-189 (190)
91 2h17_A ADP-ribosylation factor 100.0 1.8E-29 6.2E-34 183.6 14.3 158 9-173 17-180 (181)
92 1zj6_A ADP-ribosylation factor 100.0 9.4E-29 3.2E-33 180.7 17.7 158 11-175 14-177 (187)
93 1fzq_A ADP-ribosylation factor 100.0 1.2E-28 4.1E-33 179.4 17.2 159 11-176 14-178 (181)
94 2zej_A Dardarin, leucine-rich 100.0 6.6E-30 2.3E-34 186.5 10.1 163 13-176 2-178 (184)
95 2b6h_A ADP-ribosylation factor 100.0 1.3E-29 4.4E-34 186.2 11.1 158 11-175 27-190 (192)
96 2wkq_A NPH1-1, RAS-related C3 100.0 5E-28 1.7E-32 191.8 21.0 162 12-175 154-329 (332)
97 1moz_A ARL1, ADP-ribosylation 100.0 1.8E-28 6E-33 178.4 16.7 160 11-177 16-181 (183)
98 3llu_A RAS-related GTP-binding 100.0 6.1E-29 2.1E-33 183.1 12.4 162 8-174 15-195 (196)
99 2x77_A ADP-ribosylation factor 100.0 3.4E-29 1.1E-33 183.3 10.6 160 11-177 20-185 (189)
100 3th5_A RAS-related C3 botulinu 99.9 4.5E-31 1.6E-35 195.7 0.0 162 11-174 28-203 (204)
101 2qu8_A Putative nucleolar GTP- 100.0 3.4E-27 1.2E-31 177.8 18.0 168 11-181 27-210 (228)
102 2wji_A Ferrous iron transport 100.0 1.1E-27 3.7E-32 171.8 14.4 153 13-174 3-163 (165)
103 3c5h_A Glucocorticoid receptor 100.0 1.1E-28 3.9E-33 188.9 7.8 167 7-175 13-254 (255)
104 2lkc_A Translation initiation 100.0 2.5E-27 8.4E-32 171.5 14.0 159 11-178 6-173 (178)
105 2fh5_B SR-beta, signal recogni 99.9 1.5E-27 5.3E-32 177.8 11.9 160 11-173 5-213 (214)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 7.3E-27 2.5E-31 183.3 15.7 160 12-175 2-180 (307)
107 1svi_A GTP-binding protein YSX 99.9 1.1E-26 3.6E-31 170.7 13.7 160 9-175 19-194 (195)
108 2cxx_A Probable GTP-binding pr 99.9 5.6E-27 1.9E-31 171.4 11.3 157 14-179 2-187 (190)
109 2wjg_A FEOB, ferrous iron tran 99.9 2.1E-26 7.3E-31 168.1 13.5 157 12-177 6-170 (188)
110 3o47_A ADP-ribosylation factor 99.9 4.7E-26 1.6E-30 180.2 15.9 158 12-176 164-327 (329)
111 3iev_A GTP-binding protein ERA 99.9 1.2E-25 4.2E-30 176.3 16.9 166 6-175 3-181 (308)
112 2dyk_A GTP-binding protein; GT 99.9 6.9E-26 2.3E-30 161.2 13.8 150 14-174 2-160 (161)
113 3a1s_A Iron(II) transport prot 99.9 7E-26 2.4E-30 173.4 14.8 156 11-175 3-166 (258)
114 3lvq_E ARF-GAP with SH3 domain 99.9 1.4E-25 4.9E-30 186.9 17.6 162 11-179 320-487 (497)
115 3pqc_A Probable GTP-binding pr 99.9 1.4E-25 4.8E-30 164.5 14.5 163 6-176 16-194 (195)
116 3r7w_B Gtpase2, GTP-binding pr 99.9 2.8E-27 9.6E-32 184.5 5.6 163 15-184 1-182 (331)
117 2gj8_A MNME, tRNA modification 99.9 2.6E-26 8.8E-31 165.7 9.3 154 12-175 3-165 (172)
118 3dpu_A RAB family protein; roc 99.9 2.7E-26 9.1E-31 192.7 8.4 164 9-176 37-208 (535)
119 4dhe_A Probable GTP-binding pr 99.9 1.7E-25 5.7E-30 167.8 11.4 167 8-178 24-213 (223)
120 3iby_A Ferrous iron transport 99.9 1E-25 3.6E-30 172.2 10.1 151 14-173 2-164 (256)
121 3b1v_A Ferrous iron uptake tra 99.9 1.6E-25 5.5E-30 172.4 10.9 153 12-174 2-162 (272)
122 3k53_A Ferrous iron transport 99.9 8.6E-25 2.9E-29 168.7 13.2 155 13-175 3-165 (271)
123 3i8s_A Ferrous iron transport 99.9 4.9E-25 1.7E-29 170.2 9.3 153 13-174 3-167 (274)
124 1nrj_B SR-beta, signal recogni 99.9 1.7E-25 5.8E-30 167.2 6.0 148 6-162 5-170 (218)
125 2hjg_A GTP-binding protein ENG 99.9 3.5E-24 1.2E-28 175.6 13.5 161 11-177 173-350 (436)
126 3qq5_A Small GTP-binding prote 99.9 4.4E-25 1.5E-29 179.0 7.3 190 7-210 28-225 (423)
127 2e87_A Hypothetical protein PH 99.9 5.6E-23 1.9E-27 164.4 17.9 163 11-178 165-338 (357)
128 4dcu_A GTP-binding protein ENG 99.9 9.9E-24 3.4E-28 173.9 13.6 163 10-178 192-371 (456)
129 3gee_A MNME, tRNA modification 99.9 1.6E-23 5.6E-28 172.4 13.6 156 13-175 233-397 (476)
130 1wf3_A GTP-binding protein; GT 99.9 3.6E-23 1.2E-27 161.6 14.7 156 11-174 5-171 (301)
131 1lnz_A SPO0B-associated GTP-bi 99.9 2.8E-23 9.5E-28 164.4 10.0 157 14-175 159-329 (342)
132 1mky_A Probable GTP-binding pr 99.9 2.4E-22 8.4E-27 164.8 15.8 153 14-176 2-166 (439)
133 1xzp_A Probable tRNA modificat 99.9 1E-22 3.4E-27 167.9 13.1 153 13-176 243-405 (482)
134 1wb1_A Translation elongation 99.9 5.6E-22 1.9E-26 164.0 16.1 158 9-175 15-188 (482)
135 3lxx_A GTPase IMAP family memb 99.9 2.1E-21 7.1E-26 147.1 17.9 164 9-176 25-214 (239)
136 3sjy_A Translation initiation 99.9 1.5E-21 5.2E-26 158.5 17.9 164 9-175 4-191 (403)
137 1s0u_A EIF-2-gamma, translatio 99.9 4.3E-21 1.5E-25 156.0 18.9 159 11-175 6-197 (408)
138 3cb4_D GTP-binding protein LEP 99.9 1.1E-21 3.6E-26 165.3 15.4 158 12-175 3-181 (599)
139 2hjg_A GTP-binding protein ENG 99.9 4.7E-23 1.6E-27 168.9 6.8 153 13-175 3-164 (436)
140 2ywe_A GTP-binding protein LEP 99.9 1.8E-21 6E-26 163.7 16.3 159 11-175 4-183 (600)
141 2qtf_A Protein HFLX, GTP-bindi 99.9 4.1E-21 1.4E-25 153.4 17.1 160 15-177 181-355 (364)
142 3geh_A MNME, tRNA modification 99.9 2.2E-22 7.4E-27 165.2 9.8 152 12-175 223-383 (462)
143 2xtp_A GTPase IMAP family memb 99.9 2E-21 6.9E-26 148.9 13.1 162 10-176 19-208 (260)
144 1mky_A Probable GTP-binding pr 99.9 7E-21 2.4E-25 156.1 17.0 161 11-177 178-356 (439)
145 1kk1_A EIF2gamma; initiation o 99.9 4E-21 1.4E-25 156.3 15.5 160 10-175 7-199 (410)
146 1ega_A Protein (GTP-binding pr 99.9 7.1E-22 2.4E-26 154.4 10.5 157 11-174 6-173 (301)
147 3j2k_7 ERF3, eukaryotic polype 99.9 3.3E-21 1.1E-25 157.8 14.7 155 9-168 13-217 (439)
148 3t5d_A Septin-7; GTP-binding p 99.9 4.9E-22 1.7E-26 153.5 8.5 160 11-174 6-202 (274)
149 3lxw_A GTPase IMAP family memb 99.9 3E-21 1E-25 146.9 12.5 162 11-176 19-208 (247)
150 3p26_A Elongation factor 1 alp 99.9 2.1E-21 7.1E-26 161.0 12.4 153 12-166 32-228 (483)
151 1d2e_A Elongation factor TU (E 99.9 4.5E-21 1.5E-25 155.4 11.8 159 12-174 2-193 (397)
152 3izy_P Translation initiation 99.8 3.1E-23 1E-27 172.3 -1.1 158 12-174 3-166 (537)
153 2ged_A SR-beta, signal recogni 99.8 4.5E-21 1.5E-25 140.4 9.6 116 10-134 45-172 (193)
154 1cip_A Protein (guanine nucleo 99.8 1.7E-20 6E-25 149.0 13.7 123 53-177 186-345 (353)
155 4dcu_A GTP-binding protein ENG 99.8 1.3E-21 4.5E-26 161.2 7.5 154 12-175 22-184 (456)
156 2qag_A Septin-2, protein NEDD5 99.8 7.5E-22 2.6E-26 157.8 5.4 161 12-178 36-235 (361)
157 1zun_B Sulfate adenylate trans 99.8 1.1E-20 3.6E-25 154.8 12.1 158 9-169 20-217 (434)
158 2elf_A Protein translation elo 99.8 6.6E-21 2.3E-25 152.6 10.5 147 15-177 23-181 (370)
159 3tr5_A RF-3, peptide chain rel 99.8 1.7E-20 5.7E-25 156.4 12.7 116 11-132 11-148 (528)
160 2c78_A Elongation factor TU-A; 99.8 6.9E-21 2.3E-25 154.7 9.0 148 11-162 9-180 (405)
161 1jny_A EF-1-alpha, elongation 99.8 1.4E-21 4.9E-26 160.0 5.0 155 11-168 4-205 (435)
162 1g7s_A Translation initiation 99.8 5E-20 1.7E-24 155.3 14.0 158 12-176 4-218 (594)
163 2xtz_A Guanine nucleotide-bind 99.8 6.2E-20 2.1E-24 145.8 13.4 120 60-179 181-348 (354)
164 3ohm_A Guanine nucleotide-bind 99.8 7E-20 2.4E-24 143.5 13.3 124 52-177 159-319 (327)
165 2aka_B Dynamin-1; fusion prote 99.8 1.6E-20 5.6E-25 146.6 8.5 163 9-174 22-251 (299)
166 3izq_1 HBS1P, elongation facto 99.8 1.8E-20 6.1E-25 158.8 8.9 154 11-166 165-362 (611)
167 1zo1_I IF2, translation initia 99.8 6.1E-22 2.1E-26 163.3 -1.3 155 12-172 3-163 (501)
168 1r5b_A Eukaryotic peptide chai 99.8 9.7E-21 3.3E-25 156.2 5.3 155 11-167 41-243 (467)
169 1pui_A ENGB, probable GTP-bind 99.8 2.9E-19 9.8E-24 132.5 12.6 159 10-175 23-198 (210)
170 3avx_A Elongation factor TS, e 99.8 9.8E-20 3.3E-24 160.6 11.4 161 9-173 292-483 (1289)
171 4fid_A G protein alpha subunit 99.8 2.7E-19 9.2E-24 140.7 11.9 116 61-176 160-328 (340)
172 1f60_A Elongation factor EEF1A 99.8 6E-20 2E-24 151.1 7.5 150 11-166 5-202 (458)
173 3def_A T7I23.11 protein; chlor 99.8 1.3E-18 4.5E-23 133.4 13.7 126 11-139 34-172 (262)
174 2j69_A Bacterial dynamin-like 99.8 1.6E-18 5.6E-23 149.0 15.2 164 12-178 68-327 (695)
175 3t34_A Dynamin-related protein 99.8 1.5E-19 5E-24 144.8 7.2 161 12-174 33-259 (360)
176 2dy1_A Elongation factor G; tr 99.8 1.7E-18 5.7E-23 148.3 14.0 116 10-131 6-139 (665)
177 1udx_A The GTP-binding protein 99.8 2.2E-18 7.6E-23 139.4 12.7 160 14-177 158-326 (416)
178 1jwy_B Dynamin A GTPase domain 99.8 1.7E-18 5.8E-23 136.1 11.4 162 11-175 22-261 (315)
179 1h65_A Chloroplast outer envel 99.8 1.6E-18 5.4E-23 133.6 10.7 126 11-139 37-175 (270)
180 3mca_A HBS1, elongation factor 99.8 6.5E-20 2.2E-24 154.9 1.9 148 10-164 174-371 (592)
181 1dar_A EF-G, elongation factor 99.8 1.2E-17 4E-22 143.6 15.8 119 8-132 7-143 (691)
182 2h5e_A Peptide chain release f 99.8 1.1E-17 3.7E-22 139.6 13.4 118 11-132 11-148 (529)
183 2qnr_A Septin-2, protein NEDD5 99.7 4.1E-19 1.4E-23 138.7 3.7 162 10-176 15-214 (301)
184 1wxq_A GTP-binding protein; st 99.7 1.7E-18 5.8E-23 139.7 6.7 85 14-98 1-114 (397)
185 2rdo_7 EF-G, elongation factor 99.7 1.4E-16 4.9E-21 137.1 18.6 121 8-132 5-148 (704)
186 2xex_A Elongation factor G; GT 99.7 7E-17 2.4E-21 138.9 16.1 118 9-132 6-141 (693)
187 2qag_C Septin-7; cell cycle, c 99.7 5E-18 1.7E-22 137.4 8.4 160 10-173 28-224 (418)
188 1zcb_A G alpha I/13; GTP-bindi 99.7 2.1E-17 7.2E-22 131.7 10.9 125 53-179 194-356 (362)
189 1u0l_A Probable GTPase ENGC; p 99.7 2.8E-18 9.7E-23 134.0 4.7 134 28-172 32-169 (301)
190 1azs_C GS-alpha; complex (lyas 99.7 8.6E-17 2.9E-21 129.2 12.5 126 53-180 210-389 (402)
191 2x2e_A Dynamin-1; nitration, h 99.7 8.6E-18 2.9E-22 134.2 4.2 159 11-172 29-254 (353)
192 1jal_A YCHF protein; nucleotid 99.7 7.8E-16 2.7E-20 122.1 15.1 146 14-159 3-240 (363)
193 2wsm_A Hydrogenase expression/ 99.7 6.5E-17 2.2E-21 120.7 6.9 156 12-178 29-216 (221)
194 3vqt_A RF-3, peptide chain rel 99.7 3.4E-15 1.1E-19 125.1 15.5 115 12-132 30-166 (548)
195 3p32_A Probable GTPase RV1496/ 99.6 2.4E-16 8.1E-21 125.9 7.6 104 62-176 172-284 (355)
196 2hf9_A Probable hydrogenase ni 99.6 5.4E-18 1.8E-22 127.1 -1.9 154 12-176 37-224 (226)
197 1n0u_A EF-2, elongation factor 99.6 1.3E-15 4.3E-20 133.6 11.5 118 10-131 16-163 (842)
198 2qpt_A EH domain-containing pr 99.6 5.9E-16 2E-20 129.8 7.8 120 8-133 60-233 (550)
199 2dby_A GTP-binding protein; GD 99.6 2.9E-15 1E-19 119.4 10.0 155 14-168 2-254 (368)
200 2www_A Methylmalonic aciduria 99.6 1.7E-14 5.7E-19 114.8 12.1 103 62-176 167-279 (349)
201 4a9a_A Ribosome-interacting GT 99.6 7.3E-14 2.5E-18 111.4 15.8 152 12-167 71-239 (376)
202 1yrb_A ATP(GTP)binding protein 99.6 3.8E-14 1.3E-18 108.4 12.8 111 62-175 109-256 (262)
203 3zvr_A Dynamin-1; hydrolase, D 99.6 1.3E-14 4.5E-19 124.5 9.9 159 11-173 49-275 (772)
204 4fn5_A EF-G 1, elongation fact 99.5 2.9E-13 1E-17 116.9 15.9 119 9-131 9-150 (709)
205 2p67_A LAO/AO transport system 99.5 6.1E-15 2.1E-19 117.1 4.8 104 62-176 149-261 (341)
206 3j25_A Tetracycline resistance 99.5 5E-15 1.7E-19 126.3 3.7 115 14-132 3-133 (638)
207 2qm8_A GTPase/ATPase; G protei 99.4 2.6E-13 9E-18 107.4 8.0 103 62-175 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 5.4E-13 1.8E-17 104.1 8.1 97 72-171 66-164 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 9.8E-12 3.4E-16 99.8 14.9 86 12-97 19-127 (392)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 6.5E-13 2.2E-17 106.4 5.8 88 11-98 20-129 (396)
211 3l82_B F-box only protein 4; T 99.2 1.5E-11 5E-16 89.4 7.2 103 71-175 111-222 (227)
212 3l2o_B F-box only protein 4; s 99.1 7.1E-11 2.4E-15 89.9 6.0 104 70-175 195-307 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 1.8E-11 6.1E-16 98.0 0.4 141 14-163 163-318 (369)
214 2j37_W Signal recognition part 99.0 3E-10 1E-14 93.9 4.9 152 11-173 99-310 (504)
215 3h2y_A GTPase family protein; 99.0 2.2E-11 7.6E-16 97.4 -1.9 135 14-157 161-311 (368)
216 3h2y_A GTPase family protein; 99.0 2.7E-09 9.4E-14 85.3 9.8 96 71-173 55-157 (368)
217 2qag_B Septin-6, protein NEDD5 99.0 1.8E-09 6.2E-14 87.3 8.7 115 13-132 42-190 (427)
218 3sop_A Neuronal-specific septi 98.9 8.3E-09 2.8E-13 79.0 8.6 137 13-154 2-178 (270)
219 1tq4_A IIGP1, interferon-induc 98.9 8.1E-08 2.8E-12 77.6 14.5 159 14-178 70-255 (413)
220 3ec1_A YQEH GTPase; atnos1, at 98.8 9.7E-09 3.3E-13 82.2 7.7 96 71-173 57-159 (369)
221 1puj_A YLQF, conserved hypothe 98.8 2.1E-08 7.1E-13 77.3 7.6 102 66-177 3-107 (282)
222 1puj_A YLQF, conserved hypothe 98.7 1.4E-08 4.8E-13 78.3 5.2 58 11-72 118-175 (282)
223 3cnl_A YLQF, putative uncharac 98.7 8.8E-09 3E-13 78.6 3.0 56 14-73 100-155 (262)
224 3dm5_A SRP54, signal recogniti 98.6 5.7E-07 2E-11 73.1 11.2 136 12-157 99-274 (443)
225 2v3c_C SRP54, signal recogniti 98.4 1.8E-06 6.3E-11 70.3 10.2 131 13-155 99-271 (432)
226 1f5n_A Interferon-induced guan 98.4 3.6E-07 1.2E-11 76.9 6.0 63 11-73 36-102 (592)
227 3kl4_A SRP54, signal recogniti 98.3 5.7E-07 1.9E-11 73.1 5.3 140 12-163 96-277 (433)
228 1j8m_F SRP54, signal recogniti 98.2 3.7E-06 1.3E-10 65.2 8.0 91 62-165 181-280 (297)
229 3szr_A Interferon-induced GTP- 98.2 2.4E-06 8.3E-11 72.6 7.6 26 14-39 46-71 (608)
230 3cnl_A YLQF, putative uncharac 98.2 6.3E-07 2.1E-11 68.3 3.2 93 69-172 4-97 (262)
231 1t9h_A YLOQ, probable GTPase E 98.2 8.3E-07 2.8E-11 69.0 3.0 89 77-168 78-169 (307)
232 1bif_A 6-phosphofructo-2-kinas 98.0 5E-07 1.7E-11 74.6 -0.6 111 12-127 38-158 (469)
233 2rcn_A Probable GTPase ENGC; Y 98.0 2.9E-05 1E-09 61.5 8.2 84 82-169 127-212 (358)
234 3e70_C DPA, signal recognition 98.0 2.1E-05 7.3E-10 61.7 7.3 141 12-164 128-308 (328)
235 3q5d_A Atlastin-1; G protein, 97.9 2.1E-05 7.1E-10 64.1 6.1 26 11-36 65-90 (447)
236 4dzz_A Plasmid partitioning pr 97.6 5.5E-05 1.9E-09 54.9 4.6 85 62-153 76-162 (206)
237 1ye8_A Protein THEP1, hypothet 97.5 5.2E-05 1.8E-09 54.2 3.3 24 14-37 1-24 (178)
238 2xxa_A Signal recognition part 97.5 0.00035 1.2E-08 56.9 7.9 79 62-151 184-269 (433)
239 1kgd_A CASK, peripheral plasma 97.4 7.6E-05 2.6E-09 53.3 3.1 22 15-36 7-28 (180)
240 1lvg_A Guanylate kinase, GMP k 97.4 9.7E-05 3.3E-09 53.6 3.1 22 15-36 6-27 (198)
241 1t9h_A YLOQ, probable GTPase E 97.4 3.5E-05 1.2E-09 59.8 0.8 24 14-37 174-197 (307)
242 3cwq_A Para family chromosome 97.4 0.0025 8.4E-08 46.5 10.7 85 62-153 68-153 (209)
243 3ney_A 55 kDa erythrocyte memb 97.3 0.00016 5.4E-09 52.4 3.6 28 9-36 15-42 (197)
244 3tr0_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 52.7 3.1 22 15-36 9-30 (205)
245 3a00_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 52.2 3.0 22 16-37 4-25 (186)
246 2yv5_A YJEQ protein; hydrolase 97.3 0.00049 1.7E-08 53.4 6.2 23 14-37 166-188 (302)
247 1znw_A Guanylate kinase, GMP k 97.2 0.00017 5.9E-09 52.6 3.1 23 15-37 22-44 (207)
248 1s96_A Guanylate kinase, GMP k 97.2 0.00018 6.1E-09 53.1 3.1 24 14-37 17-40 (219)
249 1z6g_A Guanylate kinase; struc 97.2 0.00018 6.2E-09 53.0 3.1 23 15-37 25-47 (218)
250 1zp6_A Hypothetical protein AT 97.2 0.00022 7.6E-09 51.1 3.5 24 13-36 9-32 (191)
251 3c8u_A Fructokinase; YP_612366 97.2 0.00027 9.1E-09 51.6 3.6 27 11-37 20-46 (208)
252 3tau_A Guanylate kinase, GMP k 97.2 0.00024 8.2E-09 51.9 3.2 24 14-37 9-32 (208)
253 4gp7_A Metallophosphoesterase; 97.2 0.00019 6.5E-09 50.8 2.5 20 15-34 11-30 (171)
254 1ex7_A Guanylate kinase; subst 97.1 0.00026 9E-09 50.8 3.1 21 16-36 4-24 (186)
255 1htw_A HI0065; nucleotide-bind 97.1 0.0003 1E-08 49.2 3.1 23 15-37 35-57 (158)
256 3tif_A Uncharacterized ABC tra 97.1 0.00027 9.3E-09 52.7 2.9 23 15-37 33-55 (235)
257 1kag_A SKI, shikimate kinase I 97.1 0.00032 1.1E-08 49.4 3.1 23 14-36 5-27 (173)
258 2j41_A Guanylate kinase; GMP, 97.1 0.00032 1.1E-08 50.9 3.0 24 14-37 7-30 (207)
259 2qor_A Guanylate kinase; phosp 97.1 0.00033 1.1E-08 50.9 3.1 25 13-37 12-36 (204)
260 2rcn_A Probable GTPase ENGC; Y 97.0 0.00032 1.1E-08 55.5 3.1 24 15-38 217-240 (358)
261 2bdt_A BH3686; alpha-beta prot 97.0 0.00035 1.2E-08 50.0 3.1 21 15-35 4-24 (189)
262 2pcj_A ABC transporter, lipopr 97.0 0.00033 1.1E-08 51.9 2.8 23 15-37 32-54 (224)
263 1knq_A Gluconate kinase; ALFA/ 97.0 0.00055 1.9E-08 48.3 3.9 24 13-36 8-31 (175)
264 4eun_A Thermoresistant glucoki 97.0 0.00038 1.3E-08 50.4 3.1 24 13-36 29-52 (200)
265 3fb4_A Adenylate kinase; psych 97.0 0.00041 1.4E-08 50.8 3.2 22 14-35 1-22 (216)
266 3asz_A Uridine kinase; cytidin 97.0 0.00045 1.5E-08 50.4 3.4 25 12-36 5-29 (211)
267 1ly1_A Polynucleotide kinase; 97.0 0.0005 1.7E-08 48.6 3.6 22 14-35 3-24 (181)
268 3kb2_A SPBC2 prophage-derived 97.0 0.0004 1.4E-08 48.7 3.0 22 15-36 3-24 (173)
269 2onk_A Molybdate/tungstate ABC 97.0 0.00041 1.4E-08 51.9 3.2 23 15-37 26-48 (240)
270 3lw7_A Adenylate kinase relate 97.0 0.00043 1.5E-08 48.6 3.1 20 14-33 2-21 (179)
271 3dl0_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 50.7 3.2 22 14-35 1-22 (216)
272 1b0u_A Histidine permease; ABC 97.0 0.00042 1.5E-08 52.6 3.0 23 15-37 34-56 (262)
273 2cbz_A Multidrug resistance-as 97.0 0.00043 1.5E-08 51.7 2.9 23 15-37 33-55 (237)
274 2bbw_A Adenylate kinase 4, AK4 97.0 0.00049 1.7E-08 51.6 3.3 22 13-34 27-48 (246)
275 1sgw_A Putative ABC transporte 97.0 0.00045 1.5E-08 50.8 3.0 23 15-37 37-59 (214)
276 3gfo_A Cobalt import ATP-bindi 97.0 0.00043 1.5E-08 52.9 3.0 23 15-37 36-58 (275)
277 2eyu_A Twitching motility prot 96.9 0.00046 1.6E-08 52.3 3.1 22 15-36 27-48 (261)
278 2if2_A Dephospho-COA kinase; a 96.9 0.00051 1.8E-08 49.8 3.2 22 14-35 2-23 (204)
279 4g1u_C Hemin import ATP-bindin 96.9 0.00045 1.6E-08 52.5 2.9 23 15-37 39-61 (266)
280 1np6_A Molybdopterin-guanine d 96.9 0.00053 1.8E-08 48.7 3.1 23 14-36 7-29 (174)
281 1cke_A CK, MSSA, protein (cyti 96.9 0.00055 1.9E-08 50.4 3.3 23 14-36 6-28 (227)
282 2jaq_A Deoxyguanosine kinase; 96.9 0.00056 1.9E-08 49.4 3.3 22 15-36 2-23 (205)
283 2pze_A Cystic fibrosis transme 96.9 0.0005 1.7E-08 51.1 3.0 23 15-37 36-58 (229)
284 1g6h_A High-affinity branched- 96.9 0.00048 1.6E-08 52.1 2.9 23 15-37 35-57 (257)
285 2ff7_A Alpha-hemolysin translo 96.9 0.00049 1.7E-08 51.8 2.9 23 15-37 37-59 (247)
286 2i3b_A HCR-ntpase, human cance 96.9 0.00055 1.9E-08 49.3 3.1 23 15-37 3-25 (189)
287 3b85_A Phosphate starvation-in 96.9 0.00044 1.5E-08 50.6 2.6 22 15-36 24-45 (208)
288 1mv5_A LMRA, multidrug resista 96.9 0.00057 1.9E-08 51.3 3.2 23 15-37 30-52 (243)
289 2v9p_A Replication protein E1; 96.9 0.00056 1.9E-08 53.0 3.2 23 15-37 128-150 (305)
290 3t61_A Gluconokinase; PSI-biol 96.9 0.00054 1.9E-08 49.6 3.0 24 13-36 18-41 (202)
291 2olj_A Amino acid ABC transpor 96.9 0.00052 1.8E-08 52.1 3.0 23 15-37 52-74 (263)
292 3ec2_A DNA replication protein 96.9 0.00047 1.6E-08 49.0 2.6 25 13-37 38-62 (180)
293 3vaa_A Shikimate kinase, SK; s 96.9 0.00064 2.2E-08 49.2 3.3 24 13-36 25-48 (199)
294 3end_A Light-independent proto 96.9 0.033 1.1E-06 42.9 13.2 84 62-154 157-242 (307)
295 1ji0_A ABC transporter; ATP bi 96.9 0.00053 1.8E-08 51.3 2.9 23 15-37 34-56 (240)
296 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00057 1.9E-08 51.5 3.1 22 15-36 31-52 (250)
297 3sr0_A Adenylate kinase; phosp 96.9 0.00064 2.2E-08 49.6 3.2 23 14-36 1-23 (206)
298 1vpl_A ABC transporter, ATP-bi 96.9 0.00056 1.9E-08 51.7 3.0 23 15-37 43-65 (256)
299 2qi9_C Vitamin B12 import ATP- 96.9 0.00057 1.9E-08 51.5 3.0 23 15-37 28-50 (249)
300 1jjv_A Dephospho-COA kinase; P 96.9 0.00073 2.5E-08 49.1 3.5 22 14-35 3-24 (206)
301 3uie_A Adenylyl-sulfate kinase 96.9 0.00061 2.1E-08 49.3 3.1 25 13-37 25-49 (200)
302 1qhx_A CPT, protein (chloramph 96.9 0.00064 2.2E-08 48.0 3.1 23 14-36 4-26 (178)
303 2ghi_A Transport protein; mult 96.9 0.00057 1.9E-08 51.8 2.9 23 15-37 48-70 (260)
304 2zu0_C Probable ATP-dependent 96.8 0.00063 2.2E-08 51.8 3.2 22 15-36 48-69 (267)
305 1aky_A Adenylate kinase; ATP:A 96.8 0.00072 2.5E-08 49.7 3.3 24 13-36 4-27 (220)
306 2qt1_A Nicotinamide riboside k 96.8 0.00097 3.3E-08 48.5 4.0 26 11-36 19-44 (207)
307 1nks_A Adenylate kinase; therm 96.8 0.00078 2.7E-08 48.1 3.4 23 14-36 2-24 (194)
308 2ixe_A Antigen peptide transpo 96.8 0.00061 2.1E-08 52.0 2.9 23 15-37 47-69 (271)
309 1e4v_A Adenylate kinase; trans 96.8 0.00069 2.4E-08 49.6 3.1 22 14-35 1-22 (214)
310 1y63_A LMAJ004144AAA protein; 96.8 0.0009 3.1E-08 47.8 3.6 25 12-36 9-33 (184)
311 2ihy_A ABC transporter, ATP-bi 96.8 0.00065 2.2E-08 52.0 3.0 23 15-37 49-71 (279)
312 1u0l_A Probable GTPase ENGC; p 96.8 0.00074 2.5E-08 52.3 3.4 24 15-38 171-194 (301)
313 3lnc_A Guanylate kinase, GMP k 96.8 0.0004 1.4E-08 51.5 1.8 22 15-36 29-51 (231)
314 2cdn_A Adenylate kinase; phosp 96.8 0.00094 3.2E-08 48.3 3.7 26 11-36 18-43 (201)
315 3cm0_A Adenylate kinase; ATP-b 96.8 0.00094 3.2E-08 47.5 3.7 23 13-35 4-26 (186)
316 2nq2_C Hypothetical ABC transp 96.8 0.00066 2.3E-08 51.2 2.9 23 15-37 33-55 (253)
317 3aez_A Pantothenate kinase; tr 96.8 0.0012 3.9E-08 51.5 4.3 27 11-37 88-114 (312)
318 2f1r_A Molybdopterin-guanine d 96.8 0.00035 1.2E-08 49.5 1.2 23 15-37 4-26 (171)
319 2yz2_A Putative ABC transporte 96.8 0.00069 2.4E-08 51.5 2.9 23 15-37 35-57 (266)
320 3tlx_A Adenylate kinase 2; str 96.8 0.00099 3.4E-08 49.9 3.7 24 12-35 28-51 (243)
321 2rhm_A Putative kinase; P-loop 96.8 0.00097 3.3E-08 47.7 3.5 24 13-36 5-28 (193)
322 3co5_A Putative two-component 96.8 0.0028 9.6E-08 43.2 5.7 23 14-36 28-50 (143)
323 4a74_A DNA repair and recombin 96.8 0.00074 2.5E-08 49.7 2.9 23 15-37 27-49 (231)
324 1kht_A Adenylate kinase; phosp 96.8 0.00091 3.1E-08 47.7 3.3 22 14-35 4-25 (192)
325 1ukz_A Uridylate kinase; trans 96.7 0.0013 4.6E-08 47.5 4.2 25 11-35 13-37 (203)
326 2pt5_A Shikimate kinase, SK; a 96.7 0.00098 3.4E-08 46.6 3.3 22 14-35 1-22 (168)
327 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.4E-08 47.4 3.3 23 14-36 6-28 (185)
328 2chg_A Replication factor C sm 96.7 0.0044 1.5E-07 44.9 6.9 22 15-36 40-61 (226)
329 2pjz_A Hypothetical protein ST 96.7 0.00096 3.3E-08 50.6 3.2 23 15-37 32-54 (263)
330 1uj2_A Uridine-cytidine kinase 96.7 0.0011 3.8E-08 49.8 3.5 28 8-35 17-44 (252)
331 2jeo_A Uridine-cytidine kinase 96.7 0.0012 4E-08 49.5 3.6 25 12-36 24-48 (245)
332 2ehv_A Hypothetical protein PH 96.7 0.00094 3.2E-08 49.8 3.1 21 15-35 32-52 (251)
333 1tev_A UMP-CMP kinase; ploop, 96.7 0.0012 4.2E-08 47.2 3.6 23 13-35 3-25 (196)
334 2kjq_A DNAA-related protein; s 96.7 0.00074 2.5E-08 46.6 2.3 24 14-37 37-60 (149)
335 1gvn_B Zeta; postsegregational 96.7 0.0013 4.4E-08 50.6 3.9 26 11-36 31-56 (287)
336 3tqc_A Pantothenate kinase; bi 96.7 0.0014 4.7E-08 51.2 4.0 27 10-36 89-115 (321)
337 1odf_A YGR205W, hypothetical 3 96.7 0.0014 4.9E-08 50.4 4.1 26 11-36 29-54 (290)
338 2wwf_A Thymidilate kinase, put 96.7 0.0015 5E-08 47.5 4.0 24 13-36 10-33 (212)
339 1lw7_A Transcriptional regulat 96.7 0.00081 2.8E-08 53.5 2.7 25 13-37 170-194 (365)
340 2plr_A DTMP kinase, probable t 96.7 0.0013 4.3E-08 47.8 3.6 23 14-36 5-27 (213)
341 1uf9_A TT1252 protein; P-loop, 96.7 0.0014 4.8E-08 47.3 3.7 24 13-36 8-31 (203)
342 3nh6_A ATP-binding cassette SU 96.7 0.00063 2.2E-08 52.8 1.9 23 15-37 82-104 (306)
343 3jvv_A Twitching mobility prot 96.6 0.00099 3.4E-08 52.8 3.0 22 15-36 125-146 (356)
344 1xjc_A MOBB protein homolog; s 96.6 0.0013 4.5E-08 46.3 3.3 24 13-36 4-27 (169)
345 4ido_A Atlastin-1; GTPase, GTP 96.6 0.024 8.2E-07 46.2 11.1 25 10-34 64-88 (457)
346 2x8a_A Nuclear valosin-contain 96.6 0.0011 3.6E-08 50.7 3.0 21 16-36 47-67 (274)
347 2xb4_A Adenylate kinase; ATP-b 96.6 0.0012 4.3E-08 48.6 3.3 22 14-35 1-22 (223)
348 2bbs_A Cystic fibrosis transme 96.6 0.001 3.5E-08 51.2 2.8 23 15-37 66-88 (290)
349 1via_A Shikimate kinase; struc 96.6 0.0011 3.7E-08 46.9 2.8 22 15-36 6-27 (175)
350 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0011 3.7E-08 52.6 3.0 24 15-38 32-55 (359)
351 3iij_A Coilin-interacting nucl 96.6 0.0013 4.5E-08 46.6 3.2 24 13-36 11-34 (180)
352 1zd8_A GTP:AMP phosphotransfer 96.6 0.0013 4.3E-08 48.6 3.2 23 13-35 7-29 (227)
353 1rz3_A Hypothetical protein rb 96.6 0.0017 5.9E-08 47.0 3.8 25 11-35 20-44 (201)
354 3n70_A Transport activator; si 96.6 0.0043 1.5E-07 42.4 5.6 25 13-37 24-48 (145)
355 2v54_A DTMP kinase, thymidylat 96.6 0.0015 5.1E-08 47.2 3.5 25 13-37 4-28 (204)
356 3tui_C Methionine import ATP-b 96.6 0.0012 4.2E-08 52.3 3.2 23 15-37 56-78 (366)
357 2p5t_B PEZT; postsegregational 96.6 0.0014 4.8E-08 49.3 3.4 27 10-36 29-55 (253)
358 1rj9_A FTSY, signal recognitio 96.6 0.0012 4.2E-08 51.1 3.1 84 63-156 186-281 (304)
359 2yvu_A Probable adenylyl-sulfa 96.6 0.0022 7.4E-08 45.7 4.2 25 12-36 12-36 (186)
360 1z47_A CYSA, putative ABC-tran 96.6 0.0012 4.3E-08 52.2 3.1 23 15-37 43-65 (355)
361 2pbr_A DTMP kinase, thymidylat 96.6 0.0015 5E-08 46.7 3.2 21 15-35 2-22 (195)
362 1sq5_A Pantothenate kinase; P- 96.5 0.0018 6.2E-08 50.3 3.9 26 11-36 78-103 (308)
363 1ixz_A ATP-dependent metallopr 96.5 0.0014 4.7E-08 49.3 3.1 22 16-37 52-73 (254)
364 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0012 4.1E-08 51.8 2.8 23 15-37 173-195 (330)
365 2yyz_A Sugar ABC transporter, 96.5 0.0013 4.5E-08 52.1 3.1 23 15-37 31-53 (359)
366 2gza_A Type IV secretion syste 96.5 0.0012 4.2E-08 52.4 2.9 23 15-37 177-199 (361)
367 3rlf_A Maltose/maltodextrin im 96.5 0.0014 4.7E-08 52.4 3.2 23 15-37 31-53 (381)
368 2it1_A 362AA long hypothetical 96.5 0.0014 4.7E-08 52.1 3.2 23 15-37 31-53 (362)
369 1zak_A Adenylate kinase; ATP:A 96.5 0.0012 4.1E-08 48.5 2.6 23 14-36 6-28 (222)
370 2ze6_A Isopentenyl transferase 96.5 0.0014 4.9E-08 49.3 3.1 22 15-36 3-24 (253)
371 2ewv_A Twitching motility prot 96.5 0.0015 5E-08 52.2 3.2 22 15-36 138-159 (372)
372 3b9q_A Chloroplast SRP recepto 96.5 0.0014 4.9E-08 50.7 3.1 24 13-36 100-123 (302)
373 2c95_A Adenylate kinase 1; tra 96.5 0.0016 5.4E-08 46.7 3.1 23 13-35 9-31 (196)
374 1jbk_A CLPB protein; beta barr 96.5 0.0017 6E-08 45.9 3.3 24 14-37 44-67 (195)
375 2bwj_A Adenylate kinase 5; pho 96.5 0.0016 5.5E-08 46.8 3.1 24 13-36 12-35 (199)
376 2z0h_A DTMP kinase, thymidylat 96.5 0.0017 5.7E-08 46.6 3.2 22 15-36 2-23 (197)
377 1v43_A Sugar-binding transport 96.5 0.0015 5.2E-08 52.0 3.2 23 15-37 39-61 (372)
378 1g29_1 MALK, maltose transport 96.5 0.0015 5.1E-08 52.1 3.1 24 15-38 31-54 (372)
379 3be4_A Adenylate kinase; malar 96.5 0.0017 5.7E-08 47.7 3.2 23 14-36 6-28 (217)
380 4e22_A Cytidylate kinase; P-lo 96.5 0.0019 6.4E-08 48.6 3.4 22 13-34 27-48 (252)
381 1gtv_A TMK, thymidylate kinase 96.5 0.00061 2.1E-08 49.7 0.6 22 15-36 2-23 (214)
382 1ak2_A Adenylate kinase isoenz 96.5 0.002 6.8E-08 47.8 3.5 25 12-36 15-39 (233)
383 1nn5_A Similar to deoxythymidy 96.4 0.0019 6.5E-08 47.0 3.3 24 13-36 9-32 (215)
384 3umf_A Adenylate kinase; rossm 96.4 0.0028 9.5E-08 46.6 4.1 22 15-36 31-52 (217)
385 1sxj_E Activator 1 40 kDa subu 96.4 0.012 4E-07 46.3 8.0 21 16-36 39-59 (354)
386 1p9r_A General secretion pathw 96.4 0.0016 5.6E-08 52.7 3.0 23 15-37 169-191 (418)
387 1qf9_A UMP/CMP kinase, protein 96.4 0.0021 7.3E-08 45.8 3.4 22 14-35 7-28 (194)
388 1e6c_A Shikimate kinase; phosp 96.4 0.002 6.9E-08 45.2 3.1 21 15-35 4-24 (173)
389 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0024 8.2E-08 48.3 3.6 24 13-36 4-27 (260)
390 2pez_A Bifunctional 3'-phospho 96.4 0.0026 9E-08 45.0 3.6 24 13-36 5-28 (179)
391 3te6_A Regulatory protein SIR3 96.4 0.0037 1.3E-07 48.7 4.7 26 12-37 44-69 (318)
392 2grj_A Dephospho-COA kinase; T 96.4 0.0029 9.8E-08 45.6 3.8 27 10-36 9-35 (192)
393 1iy2_A ATP-dependent metallopr 96.4 0.002 6.9E-08 49.1 3.1 23 15-37 75-97 (278)
394 2vli_A Antibiotic resistance p 96.4 0.0016 5.3E-08 46.2 2.3 24 13-36 5-28 (183)
395 2oap_1 GSPE-2, type II secreti 96.4 0.0018 6.2E-08 53.8 3.0 23 15-37 262-284 (511)
396 3d31_A Sulfate/molybdate ABC t 96.4 0.0012 4.3E-08 52.1 1.9 23 15-37 28-50 (348)
397 1zuh_A Shikimate kinase; alpha 96.3 0.0026 8.8E-08 44.5 3.4 24 12-35 6-29 (168)
398 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0021 7.3E-08 47.2 3.1 23 15-37 25-47 (235)
399 2iyv_A Shikimate kinase, SK; t 96.3 0.0022 7.6E-08 45.5 3.1 22 14-35 3-24 (184)
400 1vht_A Dephospho-COA kinase; s 96.3 0.0027 9.1E-08 46.5 3.6 23 13-35 4-26 (218)
401 1in4_A RUVB, holliday junction 96.3 0.002 6.9E-08 50.5 3.1 23 15-37 53-75 (334)
402 1q3t_A Cytidylate kinase; nucl 96.3 0.0025 8.5E-08 47.4 3.4 29 7-35 10-38 (236)
403 3gd7_A Fusion complex of cysti 96.3 0.002 6.7E-08 51.7 3.0 22 15-36 49-70 (390)
404 2vp4_A Deoxynucleoside kinase; 96.3 0.0026 8.9E-08 47.1 3.4 26 11-36 18-43 (230)
405 2og2_A Putative signal recogni 96.3 0.0024 8.2E-08 50.6 3.1 25 12-36 156-180 (359)
406 1nij_A Hypothetical protein YJ 96.3 0.0019 6.4E-08 50.4 2.5 24 14-37 5-28 (318)
407 3u61_B DNA polymerase accessor 96.3 0.085 2.9E-06 40.8 11.9 22 16-37 51-72 (324)
408 3r20_A Cytidylate kinase; stru 96.2 0.0029 1E-07 47.0 3.3 24 12-35 8-31 (233)
409 3kta_A Chromosome segregation 96.2 0.0027 9.2E-08 45.0 3.0 21 15-35 28-48 (182)
410 1lv7_A FTSH; alpha/beta domain 96.2 0.0027 9.2E-08 47.7 3.1 24 13-36 45-68 (257)
411 2p65_A Hypothetical protein PF 96.2 0.0022 7.6E-08 45.2 2.4 25 13-37 43-67 (187)
412 2yhs_A FTSY, cell division pro 96.2 0.0026 9E-08 52.4 3.1 24 13-36 293-316 (503)
413 1oxx_K GLCV, glucose, ABC tran 96.2 0.0012 4.2E-08 52.2 1.1 23 15-37 33-55 (353)
414 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0032 1.1E-07 50.0 3.5 24 11-34 31-54 (362)
415 2f6r_A COA synthase, bifunctio 96.2 0.0032 1.1E-07 48.2 3.4 24 12-35 74-97 (281)
416 1cr0_A DNA primase/helicase; R 96.2 0.0026 9E-08 48.9 2.9 23 15-37 37-59 (296)
417 1m7g_A Adenylylsulfate kinase; 96.1 0.004 1.4E-07 45.3 3.6 24 13-36 25-48 (211)
418 3bos_A Putative DNA replicatio 96.1 0.0035 1.2E-07 46.2 3.3 24 13-36 52-75 (242)
419 3t15_A Ribulose bisphosphate c 96.1 0.0051 1.7E-07 47.3 4.3 27 11-37 34-60 (293)
420 3gmt_A Adenylate kinase; ssgci 96.1 0.0036 1.2E-07 46.4 3.3 25 11-35 6-30 (230)
421 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0028 9.5E-08 52.0 2.9 24 14-37 139-162 (460)
422 2obl_A ESCN; ATPase, hydrolase 96.1 0.0032 1.1E-07 49.7 3.2 24 14-37 72-95 (347)
423 2cvh_A DNA repair and recombin 96.1 0.0032 1.1E-07 45.9 3.1 21 15-35 22-42 (220)
424 2w58_A DNAI, primosome compone 96.1 0.0037 1.3E-07 45.1 3.3 24 14-37 55-78 (202)
425 1n0w_A DNA repair protein RAD5 96.1 0.0034 1.2E-07 46.5 3.1 22 15-36 26-47 (243)
426 3nwj_A ATSK2; P loop, shikimat 96.1 0.0033 1.1E-07 47.2 3.0 22 14-35 49-70 (250)
427 4eaq_A DTMP kinase, thymidylat 96.1 0.0051 1.8E-07 45.5 4.0 26 12-37 25-50 (229)
428 1svm_A Large T antigen; AAA+ f 96.0 0.0037 1.3E-07 49.9 3.1 22 14-35 170-191 (377)
429 1ltq_A Polynucleotide kinase; 96.0 0.0047 1.6E-07 47.5 3.6 22 14-35 3-24 (301)
430 3euj_A Chromosome partition pr 95.9 0.0042 1.4E-07 51.2 3.1 21 15-35 31-51 (483)
431 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0045 1.5E-07 42.6 2.9 19 16-34 26-44 (149)
432 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0047 1.6E-07 51.7 3.4 24 15-38 49-72 (538)
433 2dpy_A FLII, flagellum-specifi 95.9 0.0048 1.6E-07 50.3 3.2 23 15-37 159-181 (438)
434 3b60_A Lipid A export ATP-bind 95.9 0.0044 1.5E-07 52.4 3.1 23 15-37 371-393 (582)
435 1njg_A DNA polymerase III subu 95.9 0.005 1.7E-07 45.2 3.0 22 15-36 47-68 (250)
436 3b9p_A CG5977-PA, isoform A; A 95.9 0.0047 1.6E-07 47.4 3.0 24 13-36 54-77 (297)
437 3h4m_A Proteasome-activating n 95.8 0.0048 1.7E-07 47.0 3.0 24 13-36 51-74 (285)
438 1p5z_B DCK, deoxycytidine kina 95.8 0.004 1.4E-07 47.1 2.5 26 11-36 22-47 (263)
439 1tue_A Replication protein E1; 95.8 0.0042 1.4E-07 45.1 2.4 22 15-36 60-81 (212)
440 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0053 1.8E-07 46.0 3.1 24 13-36 39-62 (262)
441 3ozx_A RNAse L inhibitor; ATP 95.8 0.0047 1.6E-07 51.7 3.0 24 15-38 27-50 (538)
442 3b5x_A Lipid A export ATP-bind 95.8 0.0051 1.7E-07 52.1 3.2 23 15-37 371-393 (582)
443 2qmh_A HPR kinase/phosphorylas 95.8 0.006 2.1E-07 44.1 3.1 25 13-37 34-58 (205)
444 3syl_A Protein CBBX; photosynt 95.8 0.0069 2.3E-07 46.7 3.7 26 11-36 65-90 (309)
445 3pfi_A Holliday junction ATP-d 95.8 0.021 7.1E-07 44.6 6.5 23 14-36 56-78 (338)
446 1nlf_A Regulatory protein REPA 95.8 0.0053 1.8E-07 46.8 2.9 21 15-35 32-52 (279)
447 3cf0_A Transitional endoplasmi 95.8 0.0055 1.9E-07 47.3 3.0 23 14-36 50-72 (301)
448 2px0_A Flagellar biosynthesis 95.7 0.0056 1.9E-07 47.2 2.9 134 13-156 105-273 (296)
449 3ake_A Cytidylate kinase; CMP 95.7 0.0062 2.1E-07 43.9 3.1 21 15-35 4-24 (208)
450 3j16_B RLI1P; ribosome recycli 95.7 0.0073 2.5E-07 51.3 3.8 24 15-38 105-128 (608)
451 2yl4_A ATP-binding cassette SU 95.7 0.0045 1.6E-07 52.5 2.5 23 15-37 372-394 (595)
452 3qf4_B Uncharacterized ABC tra 95.7 0.0049 1.7E-07 52.3 2.7 23 15-37 383-405 (598)
453 3zvl_A Bifunctional polynucleo 95.7 0.0062 2.1E-07 49.3 3.0 24 13-36 258-281 (416)
454 1vma_A Cell division protein F 95.6 0.0069 2.4E-07 46.9 3.1 87 62-158 187-285 (306)
455 1l8q_A Chromosomal replication 95.6 0.0066 2.2E-07 47.3 3.0 24 14-37 38-61 (324)
456 1d2n_A N-ethylmaleimide-sensit 95.6 0.0098 3.4E-07 45.0 3.9 26 11-36 62-87 (272)
457 3ozx_A RNAse L inhibitor; ATP 95.6 0.0064 2.2E-07 50.9 3.0 24 15-38 296-319 (538)
458 4a82_A Cystic fibrosis transme 95.6 0.0044 1.5E-07 52.4 2.0 23 15-37 369-391 (578)
459 4fcw_A Chaperone protein CLPB; 95.6 0.011 3.7E-07 45.6 4.1 25 13-37 47-71 (311)
460 3bk7_A ABC transporter ATP-bin 95.6 0.0099 3.4E-07 50.5 4.1 24 15-38 119-142 (607)
461 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0079 2.7E-07 50.4 3.4 24 15-38 314-337 (538)
462 3bk7_A ABC transporter ATP-bin 95.5 0.0073 2.5E-07 51.3 3.2 24 15-38 384-407 (607)
463 4b4t_K 26S protease regulatory 95.5 0.0077 2.6E-07 48.8 3.1 24 13-36 206-229 (428)
464 2qby_A CDC6 homolog 1, cell di 95.5 0.0074 2.5E-07 47.7 3.0 23 14-36 46-68 (386)
465 3d3q_A TRNA delta(2)-isopenten 95.5 0.0081 2.8E-07 47.2 3.1 23 14-36 8-30 (340)
466 3qf4_A ABC transporter, ATP-bi 95.5 0.0056 1.9E-07 51.9 2.3 23 15-37 371-393 (587)
467 3crm_A TRNA delta(2)-isopenten 95.5 0.0083 2.9E-07 46.7 3.1 23 14-36 6-28 (323)
468 3qf7_A RAD50; ABC-ATPase, ATPa 95.5 0.0084 2.9E-07 47.7 3.1 21 13-34 24-44 (365)
469 4b4t_M 26S protease regulatory 95.5 0.0084 2.9E-07 48.7 3.1 24 13-36 215-238 (434)
470 3exa_A TRNA delta(2)-isopenten 95.4 0.0094 3.2E-07 46.2 3.2 22 15-36 5-26 (322)
471 1ofh_A ATP-dependent HSL prote 95.4 0.0087 3E-07 46.0 3.1 24 13-36 50-73 (310)
472 3a8t_A Adenylate isopentenyltr 95.4 0.0094 3.2E-07 46.7 3.2 22 15-36 42-63 (339)
473 2ga8_A Hypothetical 39.9 kDa p 95.4 0.011 3.7E-07 46.7 3.6 23 13-35 24-46 (359)
474 3ld9_A DTMP kinase, thymidylat 95.4 0.012 4.2E-07 43.3 3.7 26 11-36 19-44 (223)
475 1pzn_A RAD51, DNA repair and r 95.4 0.0084 2.9E-07 47.4 2.9 23 15-37 133-155 (349)
476 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.0086 3E-07 46.7 3.0 25 13-37 45-69 (322)
477 2dr3_A UPF0273 protein PH0284; 95.4 0.009 3.1E-07 44.3 3.0 22 15-36 25-46 (247)
478 3j16_B RLI1P; ribosome recycli 95.4 0.0089 3E-07 50.8 3.2 24 16-39 381-404 (608)
479 1fnn_A CDC6P, cell division co 95.4 0.01 3.4E-07 47.1 3.4 23 15-37 46-68 (389)
480 4b4t_L 26S protease subunit RP 95.4 0.0093 3.2E-07 48.5 3.1 25 12-36 214-238 (437)
481 1sxj_C Activator 1 40 kDa subu 95.3 0.0096 3.3E-07 46.7 3.0 24 15-38 48-71 (340)
482 3eie_A Vacuolar protein sortin 95.3 0.011 3.7E-07 46.1 3.2 24 13-36 51-74 (322)
483 1a7j_A Phosphoribulokinase; tr 95.3 0.0059 2E-07 47.0 1.6 22 14-35 6-27 (290)
484 2ocp_A DGK, deoxyguanosine kin 95.3 0.013 4.4E-07 43.5 3.5 23 14-36 3-25 (241)
485 3uc9_A Increased recombination 95.2 0.033 1.1E-06 41.0 5.4 28 10-37 26-53 (233)
486 4b4t_J 26S protease regulatory 95.2 0.011 3.7E-07 47.5 3.1 24 13-36 182-205 (405)
487 3foz_A TRNA delta(2)-isopenten 95.2 0.016 5.4E-07 44.9 3.8 23 14-36 11-33 (316)
488 2qgz_A Helicase loader, putati 95.2 0.013 4.4E-07 45.4 3.3 25 13-37 152-176 (308)
489 2r62_A Cell division protease 95.2 0.0051 1.8E-07 46.4 1.0 22 15-36 46-67 (268)
490 1sxj_D Activator 1 41 kDa subu 95.1 0.012 4.2E-07 46.1 3.1 21 16-36 61-81 (353)
491 1qhl_A Protein (cell division 95.1 0.0016 5.6E-08 48.2 -1.9 23 16-38 30-52 (227)
492 2v1u_A Cell division control p 95.1 0.011 3.7E-07 46.8 2.7 24 13-36 44-67 (387)
493 4f4c_A Multidrug resistance pr 95.1 0.0075 2.6E-07 55.9 1.9 23 14-36 1106-1128(1321)
494 4edh_A DTMP kinase, thymidylat 95.1 0.014 4.8E-07 42.7 3.1 24 13-36 6-29 (213)
495 3tqf_A HPR(Ser) kinase; transf 95.1 0.015 5.1E-07 41.0 3.0 24 14-37 17-40 (181)
496 2h92_A Cytidylate kinase; ross 95.1 0.012 4.2E-07 42.8 2.7 22 14-35 4-25 (219)
497 3pxg_A Negative regulator of g 95.1 0.013 4.5E-07 48.2 3.1 23 14-36 202-224 (468)
498 3uk6_A RUVB-like 2; hexameric 95.1 0.014 4.7E-07 46.2 3.2 24 14-37 71-94 (368)
499 3ea0_A ATPase, para family; al 95.0 0.17 5.9E-06 37.2 9.1 89 62-158 119-207 (245)
500 3qks_A DNA double-strand break 95.0 0.015 5.2E-07 42.1 3.1 19 16-34 26-44 (203)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.2e-44 Score=267.53 Aligned_cols=179 Identities=35% Similarity=0.631 Sum_probs=147.1
Q ss_pred CCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh
Q 027856 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
|+.......+...+||+|+|++|||||||+++|+.+.|...+.+|.+.++....+.+++..+.+.||||+|+++|..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 34334434455679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES 160 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
.+++.++++++|||++++.|++.+..|+..+.....++.|+++|+||+|+.+.+.++.+++++++..+++.|+++||++|
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg 160 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG 160 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence 99999999999999999999999999999998888789999999999999988899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 027856 161 MNVENAFTEVLTQIYRVVS 179 (217)
Q Consensus 161 ~~i~~~~~~i~~~~~~~~~ 179 (217)
.|++++|+.|++.+.....
T Consensus 161 ~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 161 YNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp BSHHHHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHHhhhc
Confidence 9999999999988875543
No 2
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=239.53 Aligned_cols=215 Identities=57% Similarity=0.947 Sum_probs=151.0
Q ss_pred CCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh
Q 027856 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
|.+.......+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 44444445567889999999999999999999999999888888888888888888899889999999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES 160 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
.+++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999999998876668999999999999877778888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhccCC------CC-CCCCCCceee-ecccCccccccccCCc
Q 027856 161 MNVENAFTEVLTQIYRVVSRKALEIGD------DP-AALPKGQTIN-VGTKDDVSAVKKVGCC 215 (217)
Q Consensus 161 ~~i~~~~~~i~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 215 (217)
.|++++|++|++.+.+.....+....+ .+ ...+.+.++. +.++...+++++++||
T Consensus 161 ~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 223 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223 (223)
T ss_dssp CCHHHHHHHHHHHHTTCC------------------------CCBCC----------------
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCchhcccccccccccccCCCcccccccccccccccCCCCC
Confidence 999999999999999877766665522 11 1223344555 3333333345678897
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1e-36 Score=226.45 Aligned_cols=176 Identities=49% Similarity=0.824 Sum_probs=161.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35678999999999999999999999999988888898888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999988777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhc
Q 027856 169 EVLTQIYRVVSRKALE 184 (217)
Q Consensus 169 ~i~~~~~~~~~~~~~~ 184 (217)
+|.+.+.+...+.+..
T Consensus 164 ~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 164 TMARQIKESMSQQNLN 179 (206)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999998876655443
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=224.22 Aligned_cols=172 Identities=33% Similarity=0.498 Sum_probs=151.7
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 3456689999999999999999999999998877777776554 455677888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999998877653 57999999999999887778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027856 167 FTEVLTQIYRVVSR 180 (217)
Q Consensus 167 ~~~i~~~~~~~~~~ 180 (217)
|++|++.+.+....
T Consensus 168 ~~~l~~~i~~~~~~ 181 (206)
T 2bov_A 168 FFDLMREIRARKME 181 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc
Confidence 99999999876543
No 5
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.5e-35 Score=215.16 Aligned_cols=173 Identities=43% Similarity=0.769 Sum_probs=158.3
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+.+..++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 34567899999999999999999999999998888899999988888889999899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...++.++++||++|.|++++|
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988776789999999999998777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027856 168 TEVLTQIYRVVSR 180 (217)
Q Consensus 168 ~~i~~~~~~~~~~ 180 (217)
++|++.+.+...+
T Consensus 181 ~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 181 LDLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999876543
No 6
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.9e-34 Score=210.58 Aligned_cols=175 Identities=47% Similarity=0.789 Sum_probs=159.9
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
.+..+..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+
T Consensus 4 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 83 (186)
T 2bme_A 4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA 83 (186)
T ss_dssp CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcC
Confidence 34557789999999999999999999999999888888888888888888899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++
T Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 84 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 99999999999999999999999988776678999999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 027856 167 FTEVLTQIYRVVSRK 181 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~ 181 (217)
|+++.+.+.+.....
T Consensus 164 ~~~l~~~~~~~~~~~ 178 (186)
T 2bme_A 164 FVQCARKILNKIESG 178 (186)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999998776543
No 7
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.8e-34 Score=211.95 Aligned_cols=174 Identities=52% Similarity=0.840 Sum_probs=155.0
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
.......++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 34456789999999999999999999999998888878888888888888899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876678999999999999877778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027856 167 FTEVLTQIYRVVSR 180 (217)
Q Consensus 167 ~~~i~~~~~~~~~~ 180 (217)
|++|++.+.+...+
T Consensus 175 ~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 175 FINTAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876543
No 8
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=8.1e-35 Score=216.09 Aligned_cols=173 Identities=40% Similarity=0.697 Sum_probs=152.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999998888888988888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCccCCCHHHHHHHHH-HcCCcEEEEecCCCCCHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDATAFAE-RENTFFMETSALESMNVE 164 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~ 164 (217)
++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..+++..++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999899988876543 4789999999999974 5667788888887 567889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 027856 165 NAFTEVLTQIYRVVSRKAL 183 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (217)
++|++|.+.+.+.....+.
T Consensus 164 ~l~~~l~~~~~~~~~~~~~ 182 (207)
T 1vg8_A 164 QAFQTIARNALKQETEVEL 182 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 9999999999887765543
No 9
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=214.71 Aligned_cols=172 Identities=48% Similarity=0.790 Sum_probs=147.8
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+.+.+..++|+|+|.+|+|||||+++|++..+...+.+|.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 34567789999999999999999999999998888888888888888888899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVEN 165 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 165 (217)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++ .++++||++|.|+++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999999887667899999999999987777888999999999998 899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 166 AFTEVLTQIYRVV 178 (217)
Q Consensus 166 ~~~~i~~~~~~~~ 178 (217)
+|++|++.+.+..
T Consensus 183 l~~~l~~~i~~~~ 195 (201)
T 2hup_A 183 AFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 10
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2e-34 Score=208.96 Aligned_cols=169 Identities=51% Similarity=0.876 Sum_probs=154.8
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
...+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34567899999999999999999999999988888888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++.++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988776789999999999998777788899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027856 168 TEVLTQIYR 176 (217)
Q Consensus 168 ~~i~~~~~~ 176 (217)
+++++.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999987754
No 11
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=6.9e-35 Score=212.47 Aligned_cols=172 Identities=47% Similarity=0.817 Sum_probs=129.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999999988877888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027856 170 VLTQIYRVVSRK 181 (217)
Q Consensus 170 i~~~~~~~~~~~ 181 (217)
|.+.+.+...+.
T Consensus 165 l~~~i~~~~~~~ 176 (183)
T 2fu5_C 165 LARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999998776543
No 12
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=210.36 Aligned_cols=172 Identities=49% Similarity=0.799 Sum_probs=159.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..+..++|+++|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 44678999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 027856 169 EVLTQIYRVVSR 180 (217)
Q Consensus 169 ~i~~~~~~~~~~ 180 (217)
+|.+.+.+....
T Consensus 172 ~l~~~i~~~~~~ 183 (196)
T 3tkl_A 172 TMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcc
Confidence 999998876543
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=209.67 Aligned_cols=172 Identities=66% Similarity=1.035 Sum_probs=157.6
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
+..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..++..+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 44567899999999999999999999999998888888888888888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999987766789999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027856 168 TEVLTQIYRVVS 179 (217)
Q Consensus 168 ~~i~~~~~~~~~ 179 (217)
++|.+.+.+...
T Consensus 180 ~~l~~~i~~~~~ 191 (193)
T 2oil_A 180 ETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 14
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=6.1e-34 Score=208.70 Aligned_cols=170 Identities=42% Similarity=0.738 Sum_probs=155.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 34568999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...++.++++||++|.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887666899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027856 169 EVLTQIYRVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
+|.+.+.+..
T Consensus 178 ~l~~~i~~~~ 187 (189)
T 2gf9_A 178 RLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.8e-34 Score=206.20 Aligned_cols=172 Identities=49% Similarity=0.773 Sum_probs=155.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+.+..++|+++|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 45678999999999999999999999999888888999999988999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
+++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999987765 4799999999999988778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 027856 169 EVLTQIYRVVSRK 181 (217)
Q Consensus 169 ~i~~~~~~~~~~~ 181 (217)
+|.+.+.+...+.
T Consensus 164 ~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 164 CITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 9999998877654
No 16
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=209.57 Aligned_cols=172 Identities=40% Similarity=0.735 Sum_probs=158.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45678999999999999999999999999888888888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887666899999999999988777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 027856 169 EVLTQIYRVVSR 180 (217)
Q Consensus 169 ~i~~~~~~~~~~ 180 (217)
+|.+.+.+...+
T Consensus 164 ~l~~~i~~~~~~ 175 (203)
T 1zbd_A 164 RLVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998876544
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=7.9e-34 Score=206.35 Aligned_cols=169 Identities=43% Similarity=0.760 Sum_probs=153.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34667999999999999999999999999888888888888888888889888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027856 169 EVLTQIYRV 177 (217)
Q Consensus 169 ~i~~~~~~~ 177 (217)
+|.+.+.+.
T Consensus 168 ~l~~~~~~~ 176 (181)
T 2efe_B 168 EIARRLPRV 176 (181)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhc
Confidence 999876543
No 18
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=211.01 Aligned_cols=172 Identities=47% Similarity=0.790 Sum_probs=147.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45689999999999999999999999998888888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027856 170 VLTQIYRVVSRK 181 (217)
Q Consensus 170 i~~~~~~~~~~~ 181 (217)
|++.+.+.....
T Consensus 182 l~~~i~~~~~~~ 193 (200)
T 2o52_A 182 CARTILNKIDSG 193 (200)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC
Confidence 999998776543
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=3.7e-34 Score=205.99 Aligned_cols=166 Identities=39% Similarity=0.680 Sum_probs=145.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999887766568999999999999887788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 027856 170 VLTQIY 175 (217)
Q Consensus 170 i~~~~~ 175 (217)
|.+.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 20
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.4e-33 Score=205.59 Aligned_cols=168 Identities=32% Similarity=0.521 Sum_probs=151.4
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
......++|+++|.+|+|||||+++|++..+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 4456789999999999999999999999998888888887766 666778898899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC-CCCCHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL-ESMNVEN 165 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~ 165 (217)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++...+++++++||+ +|.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 9999999999999999999998886543 3578999999999998878889999999999999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 027856 166 AFTEVLTQIYR 176 (217)
Q Consensus 166 ~~~~i~~~~~~ 176 (217)
+|++|.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 21
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=209.24 Aligned_cols=169 Identities=38% Similarity=0.728 Sum_probs=147.3
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
++.+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 34567899999999999999999999999988888888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~ 166 (217)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++... +..++++||++|.|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999998877678999999999999877778888888888874 788999999999999999
Q ss_pred HHHHHHHHHH
Q 027856 167 FTEVLTQIYR 176 (217)
Q Consensus 167 ~~~i~~~~~~ 176 (217)
|++|.+.+.+
T Consensus 181 ~~~l~~~i~~ 190 (192)
T 2il1_A 181 FLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 22
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.7e-33 Score=202.28 Aligned_cols=164 Identities=46% Similarity=0.770 Sum_probs=151.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|+++.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45799999999999999999999999988888888888888888888988999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++.+++...++.++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777788888999999999999999999999999999999
Q ss_pred HHHH
Q 027856 171 LTQI 174 (217)
Q Consensus 171 ~~~~ 174 (217)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8754
No 23
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-33 Score=204.33 Aligned_cols=170 Identities=45% Similarity=0.745 Sum_probs=146.1
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+..+..++|+++|.+|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 44577899999999999999999999999885 45678888888887878899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876678999999999999887778888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 167 FTEVLTQIYRV 177 (217)
Q Consensus 167 ~~~i~~~~~~~ 177 (217)
|+++.+.+.+.
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999887644
No 24
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.8e-33 Score=205.44 Aligned_cols=175 Identities=39% Similarity=0.700 Sum_probs=154.7
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeE-EEEEEECCe---------EEEEEEEeCCChhhh
Q 027856 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA-TRSIRCDDK---------IVKAQIWDTAGQERY 75 (217)
Q Consensus 6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~ 75 (217)
+..+.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++. ...+.+++. .+.+.+|||||++.+
T Consensus 4 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 83 (195)
T 3bc1_A 4 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF 83 (195)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG
T ss_pred cccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH
Confidence 3446678899999999999999999999999988888888888777 556666655 789999999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEE
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFME 154 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (217)
...+..+++.+|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...++++++
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE 163 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999998877654 58999999999999877778888999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhh
Q 027856 155 TSALESMNVENAFTEVLTQIYRVVSR 180 (217)
Q Consensus 155 ~Sa~~~~~i~~~~~~i~~~~~~~~~~ 180 (217)
+||++|.|++++|++|.+.+.+...+
T Consensus 164 ~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 164 TSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999998876543
No 25
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=3.1e-33 Score=201.06 Aligned_cols=164 Identities=40% Similarity=0.759 Sum_probs=152.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||.+.+...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999999988888889998888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988766789999999999998877788888999999999999999999999999999999
Q ss_pred HHHH
Q 027856 171 LTQI 174 (217)
Q Consensus 171 ~~~~ 174 (217)
.+.+
T Consensus 164 ~~~i 167 (170)
T 1z0j_A 164 SRRI 167 (170)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
No 26
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-34 Score=212.78 Aligned_cols=170 Identities=41% Similarity=0.746 Sum_probs=157.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 34578999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999988778889999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027856 169 EVLTQIYRVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
+|++.+.+..
T Consensus 179 ~l~~~i~~~~ 188 (191)
T 3dz8_A 179 RLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=8.9e-34 Score=203.89 Aligned_cols=165 Identities=44% Similarity=0.765 Sum_probs=144.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
|+|++++.+++.+..|+..+......+.|+++|+||+|+. .+....+++..++...+++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999988776789999999999994 356778888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027856 172 TQIYRV 177 (217)
Q Consensus 172 ~~~~~~ 177 (217)
+.+.+.
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988754
No 28
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.3e-33 Score=211.31 Aligned_cols=173 Identities=40% Similarity=0.714 Sum_probs=152.9
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe----------EEEEEEEeCCChhhhhh
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK----------IVKAQIWDTAGQERYRA 77 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~~ 77 (217)
...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.||||||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 34567899999999999999999999999887777788887777777777665 78999999999999999
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEe
Q 027856 78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETS 156 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (217)
.+..++..+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...++.++++|
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 999999999999999999999999999999888766543 5799999999999987777888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhh
Q 027856 157 ALESMNVENAFTEVLTQIYRVVSR 180 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~~~~~~~ 180 (217)
|++|.|++++|++|.+.+.+...+
T Consensus 180 a~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 180 AATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998876544
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-33 Score=207.61 Aligned_cols=168 Identities=40% Similarity=0.743 Sum_probs=152.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 44678999999999999999999999999887888899988888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
+++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999887767899999999999987677888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027856 169 EVLTQIYR 176 (217)
Q Consensus 169 ~i~~~~~~ 176 (217)
+|.+.+.+
T Consensus 179 ~l~~~i~~ 186 (192)
T 2fg5_A 179 GISRQIPP 186 (192)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHh
Confidence 99876643
No 30
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-33 Score=201.46 Aligned_cols=163 Identities=40% Similarity=0.703 Sum_probs=149.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888888898888888888889989999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc---cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL---RAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
|+|++++.+++.+..|+..+......+.|+++|+||+|+... +.+..++...++...++.++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877678999999999999765 56788888899999999999999999999999999
Q ss_pred HHHHHH
Q 027856 169 EVLTQI 174 (217)
Q Consensus 169 ~i~~~~ 174 (217)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998654
No 31
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=202.10 Aligned_cols=169 Identities=30% Similarity=0.389 Sum_probs=137.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--hhhhhhhhhcCCcE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--YRAITSAYYRGAVG 88 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~ 88 (217)
...++|+++|++|+|||||+++|++..+...+ ++.+.+.....+.+++..+.+.+|||||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35699999999999999999999998876655 4566677777788899889999999999887 56677788899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 3479999999999998877788888888998899999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027856 168 TEVLTQIYRVVSR 180 (217)
Q Consensus 168 ~~i~~~~~~~~~~ 180 (217)
++|.+.+.+....
T Consensus 161 ~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 161 EGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcc
Confidence 9999998766543
No 32
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=6.1e-33 Score=202.91 Aligned_cols=169 Identities=31% Similarity=0.494 Sum_probs=146.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|++..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999998777766664 444566678898899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....+++..++...+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887754 35799999999999975 566788899999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027856 170 VLTQIYRVVSRK 181 (217)
Q Consensus 170 i~~~~~~~~~~~ 181 (217)
|.+.+.+...+.
T Consensus 160 l~~~~~~~~~~~ 171 (189)
T 4dsu_A 160 LVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 999998776553
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.6e-33 Score=202.20 Aligned_cols=165 Identities=36% Similarity=0.620 Sum_probs=151.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+..++|+++|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999988888888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999988999887765 589999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 027856 171 LTQIYR 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 987753
No 34
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=6e-33 Score=206.86 Aligned_cols=172 Identities=43% Similarity=0.764 Sum_probs=152.9
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34566899999999999999999999999988888888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++..++...+++++++||++|.|++++|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988776689999999999994 35677888888999899999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027856 168 TEVLTQIYRVVSR 180 (217)
Q Consensus 168 ~~i~~~~~~~~~~ 180 (217)
++|.+.+.+....
T Consensus 174 ~~l~~~~~~~~~~ 186 (213)
T 3cph_A 174 FTLAKLIQEKIDS 186 (213)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876643
No 35
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=4.5e-33 Score=202.16 Aligned_cols=170 Identities=29% Similarity=0.488 Sum_probs=151.0
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+....++|+++|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++..+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 34567899999999999999999999999888888788776665 56677888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRD-HTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++++|||++++.++..+..|+..+.. ....+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 99999999999999999999888844 33458999999999999887788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 167 FTEVLTQIYRVV 178 (217)
Q Consensus 167 ~~~i~~~~~~~~ 178 (217)
|++|.+.+.+..
T Consensus 163 ~~~l~~~~~~~~ 174 (181)
T 2fn4_A 163 FEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 36
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2e-33 Score=203.69 Aligned_cols=165 Identities=38% Similarity=0.703 Sum_probs=152.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999999988888889888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766689999999999998777788888999999999999999999999999999999
Q ss_pred HHHHH
Q 027856 171 LTQIY 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
.+.+.
T Consensus 172 ~~~~~ 176 (179)
T 2y8e_A 172 AAALP 176 (179)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 87654
No 37
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.8e-33 Score=203.62 Aligned_cols=168 Identities=33% Similarity=0.435 Sum_probs=150.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34679999999999999999999999988888888887777 66777899989999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (217)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 999999999999999999988866543 5789999999999988788999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027856 169 EVLTQIYRVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
++++.+.+..
T Consensus 162 ~l~~~~~~~~ 171 (181)
T 3t5g_A 162 RIILEAEKMD 171 (181)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHhc
Confidence 9999887554
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.1e-32 Score=199.58 Aligned_cols=167 Identities=40% Similarity=0.704 Sum_probs=147.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34678999999999999999999999999888888888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCccCCCHHHHHHHHH-HcCCcEEEEecCCCCCH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDATAFAE-RENTFFMETSALESMNV 163 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 163 (217)
+++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++.+++. ..+.+++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988876553 578999999999997 35677888888888 56788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIYR 176 (217)
Q Consensus 164 ~~~~~~i~~~~~~ 176 (217)
+++|+++++.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=207.45 Aligned_cols=169 Identities=29% Similarity=0.345 Sum_probs=144.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh-hhhhhhcCCc
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA-ITSAYYRGAV 87 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d 87 (217)
+....++|+++|.+|||||||+++|++......+.++.+.+.....+.+++..+.+.+|||+|++.+.. ++..++..+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345689999999999999999999987655444445556666667778899999999999999987764 7778899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998876543 47999999999999877778889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 167 FTEVLTQIYRV 177 (217)
Q Consensus 167 ~~~i~~~~~~~ 177 (217)
|+++++.+.+.
T Consensus 179 f~~l~~~i~~~ 189 (195)
T 3cbq_A 179 FEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 40
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=6e-33 Score=203.38 Aligned_cols=165 Identities=38% Similarity=0.670 Sum_probs=148.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-hhhhhhhcCCcEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-AITSAYYRGAVGA 89 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~i 89 (217)
...++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 457999999999999999999999999988888888888888888889988999999999999998 8889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC---CCHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES---MNVEN 165 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~ 165 (217)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...++.++++||++| .|+.+
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence 99999999999999999999987765 467999999999999877778889999999999999999999999 99999
Q ss_pred HHHHHHHHHH
Q 027856 166 AFTEVLTQIY 175 (217)
Q Consensus 166 ~~~~i~~~~~ 175 (217)
+|++|++.+.
T Consensus 178 l~~~l~~~i~ 187 (189)
T 1z06_A 178 IFMTLAHKLK 187 (189)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=207.68 Aligned_cols=167 Identities=38% Similarity=0.638 Sum_probs=139.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34567999999999999999999999999888788888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC------CccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR------HLRAVSTEDATAFAERENTFFMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..+++..++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999999887766689999999999996 3456778888999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 i~~~~~~i~~~~~ 175 (217)
++++|++|++.+.
T Consensus 184 v~el~~~l~~~i~ 196 (199)
T 2p5s_A 184 IVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
No 42
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-33 Score=207.77 Aligned_cols=164 Identities=34% Similarity=0.465 Sum_probs=141.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 345799999999999999999999999887777777664443 4456788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.+..+++..++..+++.++++||++|.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999988888877766543 3789999999999976 5677888888999999999999999999999999
Q ss_pred HHHHHHHH
Q 027856 168 TEVLTQIY 175 (217)
Q Consensus 168 ~~i~~~~~ 175 (217)
++|++.+.
T Consensus 163 ~~l~~~~~ 170 (199)
T 2gf0_A 163 QELLTLET 170 (199)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHHh
Confidence 99987664
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=4.8e-33 Score=200.03 Aligned_cols=165 Identities=29% Similarity=0.353 Sum_probs=134.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh-hhhhhhcCCcEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA-ITSAYYRGAVGALL 91 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~ 91 (217)
.+||+++|++|+|||||+++|++......+..+.+.+.....+.+++..+.+.+|||||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998887776666777777788888899999999999999988876 67778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877654 479999999999998778889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027856 171 LTQIYRV 177 (217)
Q Consensus 171 ~~~~~~~ 177 (217)
++.+...
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9887653
No 44
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=203.88 Aligned_cols=164 Identities=27% Similarity=0.413 Sum_probs=142.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|.+|+|||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..+ ..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45679999999999999999999999998888888887665 445667888899999999999888775 6689999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEec-CCCCCHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSA-LESMNVEN 165 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~ 165 (217)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...++.++++|| ++|.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 999999999999999999998876532 58999999999999877788899999999999999999999 89999999
Q ss_pred HHHHHHHHHH
Q 027856 166 AFTEVLTQIY 175 (217)
Q Consensus 166 ~~~~i~~~~~ 175 (217)
+|+.|++.+.
T Consensus 176 lf~~l~~~i~ 185 (187)
T 3c5c_A 176 VFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.8e-32 Score=200.15 Aligned_cols=164 Identities=20% Similarity=0.300 Sum_probs=142.9
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
......+||+++|.+|||||||+++|+++.+...+.++. . .....+.+++..+.+.+|||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-G-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-E-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-c-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 445678999999999999999999999999887776663 3 334777889999999999999988776 778899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CccCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLR--HLRAVSTEDATAFAEREN-TFFMETSALESMNV 163 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 163 (217)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.+++...+ +.++++||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987653 578999999999994 456788899999999987 88999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIYRVV 178 (217)
Q Consensus 164 ~~~~~~i~~~~~~~~ 178 (217)
+++|+++++.+.+.+
T Consensus 168 ~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 168 ERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888664
No 46
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=201.25 Aligned_cols=169 Identities=46% Similarity=0.762 Sum_probs=152.7
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
......++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 34456799999999999999999999999998888889888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..+++..++...++.++++||++|.|++++
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 99999999999999999999999877543 5789999999999954 567788889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 167 FTEVLTQIYRV 177 (217)
Q Consensus 167 ~~~i~~~~~~~ 177 (217)
|++|.+.+.+.
T Consensus 169 ~~~l~~~~~~~ 179 (195)
T 1x3s_A 169 FEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 47
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.6e-33 Score=203.05 Aligned_cols=166 Identities=33% Similarity=0.506 Sum_probs=146.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECC-eEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-KIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
...++|+++|++|+|||||+++|++..+...+.++.+.+.....+.+++ ..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4579999999999999999999999988777778888778788888876 678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTD--SNIV-IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++|+|++++.+++.+..|+..+..... ...| +++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999899888876432 1444 8999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027856 167 FTEVLTQIYR 176 (217)
Q Consensus 167 ~~~i~~~~~~ 176 (217)
|++|.+.+.+
T Consensus 164 ~~~l~~~~~~ 173 (178)
T 2hxs_A 164 FQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 48
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=5.8e-33 Score=207.50 Aligned_cols=170 Identities=24% Similarity=0.425 Sum_probs=145.7
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
..+....+||+|+|.+|+|||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34556789999999999999999999999999888888887776 44566778889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cE
Q 027856 87 VGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FF 152 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 152 (217)
|++|+|||++++.+++. +..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...++ .+
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence 99999999999999998 688999998765 58999999999999763 56889999999999998 89
Q ss_pred EEEecCCCCC-HHHHHHHHHHHHHHHH
Q 027856 153 METSALESMN-VENAFTEVLTQIYRVV 178 (217)
Q Consensus 153 ~~~Sa~~~~~-i~~~~~~i~~~~~~~~ 178 (217)
+++||++|.| ++++|+++++.+.+..
T Consensus 179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EEeccCCCcccHHHHHHHHHHHHhccC
Confidence 9999999998 9999999999887554
No 49
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.5e-32 Score=201.16 Aligned_cols=165 Identities=36% Similarity=0.669 Sum_probs=147.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeE-----------------------------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI----------------------------- 61 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 61 (217)
...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999999888888888888888777777655
Q ss_pred --------EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856 62 --------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 62 --------~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 133 (217)
+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-ccc
Confidence 899999999999999999999999999999999999999999999999988765 499999999999 554
Q ss_pred cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
+.+..+++.+++...+++++++||++|.|++++|++|.+.+.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 677889999999999999999999999999999999999888654
No 50
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=206.68 Aligned_cols=170 Identities=31% Similarity=0.453 Sum_probs=144.5
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3445689999999999999999999999999888878877666 555556677789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999876543 47899999999999887888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 167 FTEVLTQIYRVV 178 (217)
Q Consensus 167 ~~~i~~~~~~~~ 178 (217)
|++|.+.+.+..
T Consensus 178 ~~~l~~~i~~~~ 189 (201)
T 3oes_A 178 FTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhh
Confidence 999999887543
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.4e-32 Score=199.33 Aligned_cols=171 Identities=33% Similarity=0.500 Sum_probs=149.1
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
......++|+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3445679999999999999999999999998777777766554 445667888889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 99999999999999999999988877654 47999999999999877778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027856 167 FTEVLTQIYRVVS 179 (217)
Q Consensus 167 ~~~i~~~~~~~~~ 179 (217)
|++|.+.+.+.+.
T Consensus 172 ~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 172 FFDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999886653
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.7e-32 Score=196.65 Aligned_cols=163 Identities=33% Similarity=0.403 Sum_probs=123.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|++|+|||||+++|.+....... ++.+.++ ...+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999987765433 4455544 35567789999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35799999999999988788899999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027856 172 TQIYRV 177 (217)
Q Consensus 172 ~~~~~~ 177 (217)
+.+.+.
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988754
No 53
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.1e-32 Score=201.29 Aligned_cols=167 Identities=25% Similarity=0.486 Sum_probs=147.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|.+|+|||||+++|++..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 45678999999999999999999999999888888888766654 56678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc--cCCCHHHHHHHHHHcCCc-EEEEecCCCCCHH
Q 027856 89 ALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL--RAVSTEDATAFAERENTF-FMETSALESMNVE 164 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 164 (217)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++...++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 67888887654 57999999999999753 567889999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYRV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
++|++|++.+.+.
T Consensus 177 ~l~~~l~~~i~~~ 189 (194)
T 3reg_A 177 EVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888643
No 54
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1e-32 Score=200.44 Aligned_cols=169 Identities=37% Similarity=0.676 Sum_probs=135.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
....++|+++|++|+|||||+++|++..+...+.++.+.+.....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999999888888888888877777776 556899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCC-ccCCCHHHHHHHHH-HcCCcEEEEecCCCCC
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRH-LRAVSTEDATAFAE-RENTFFMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 162 (217)
+++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..+++.+++. ..+.+++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988876543 5789999999999954 34567888888887 4668899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIYRVV 178 (217)
Q Consensus 163 i~~~~~~i~~~~~~~~ 178 (217)
++++|++|.+.+.+++
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999888654
No 55
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.9e-32 Score=195.40 Aligned_cols=163 Identities=34% Similarity=0.540 Sum_probs=143.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999998777777766554 3455678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877654 479999999999998777788899999999999999999999999999999999
Q ss_pred HHHHH
Q 027856 171 LTQIY 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
.+.+.
T Consensus 162 ~~~i~ 166 (168)
T 1u8z_A 162 MREIR 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98775
No 56
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4.1e-32 Score=196.92 Aligned_cols=164 Identities=21% Similarity=0.347 Sum_probs=138.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|++|+|||||+++|+++.+.. +.+|.+..+ ...+.+++..+.+.+|||||++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999998876 667776444 56667788889999999999876 35778899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCC--CccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT---DSNIVIMLVGNKADLR--HLRAVSTEDATAFAERE-NTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 164 (217)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..+++.+++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999988766655443 3579999999999994 44667888888888876 6889999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027856 165 NAFTEVLTQIYRVVSRK 181 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~~ 181 (217)
++|+++++.+.+.....
T Consensus 158 ~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999998876654
No 57
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=201.18 Aligned_cols=170 Identities=30% Similarity=0.471 Sum_probs=139.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|.+|+|||||+++|++..+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 456789999999999999999999999988777777776444 4566778888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcCC-cEEE
Q 027856 89 ALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAERENT-FFME 154 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 154 (217)
+++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++..++...+. .+++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999986 7998887765 3899999999999975 246778888999988887 8999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhh
Q 027856 155 TSALESMNVENAFTEVLTQIYRVVSR 180 (217)
Q Consensus 155 ~Sa~~~~~i~~~~~~i~~~~~~~~~~ 180 (217)
+||++|.|++++|++|++.+.+...+
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999999999998876543
No 58
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=5.6e-33 Score=206.15 Aligned_cols=171 Identities=30% Similarity=0.467 Sum_probs=115.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCCCcccceeEeEEEEEEECCe--EEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRCDDK--IVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
...++|+|+|.+|+|||||+++|++. .+...+.+|.+.++....+.+++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999999 777777788877777888888876 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCC-ccCCCHHHHHHHHHHcCCcEEEEecCC-CC
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRH-LRAVSTEDATAFAERENTFFMETSALE-SM 161 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 161 (217)
|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++.+++...++.++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 5899999999999987 677888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 027856 162 NVENAFTEVLTQIYRVVSRK 181 (217)
Q Consensus 162 ~i~~~~~~i~~~~~~~~~~~ 181 (217)
|++++|++|.+.+.+...++
T Consensus 178 gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988776554
No 59
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=5.9e-33 Score=206.95 Aligned_cols=167 Identities=30% Similarity=0.542 Sum_probs=142.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999998877777776554 445667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccC--------CCHHHHHHHHHHcCC-cEEEEecCCC
Q 027856 91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRA--------VSTEDATAFAERENT-FFMETSALES 160 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 160 (217)
+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.+. +..+++.+++...++ .++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 7999887765 4899999999999976433 367888889998886 8999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 027856 161 MNVENAFTEVLTQIYRVVS 179 (217)
Q Consensus 161 ~~i~~~~~~i~~~~~~~~~ 179 (217)
.|++++|++|++.+.+...
T Consensus 165 ~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp TTHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHhhhhh
Confidence 9999999999998876543
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4e-32 Score=194.48 Aligned_cols=163 Identities=31% Similarity=0.497 Sum_probs=144.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.++|+++|++|+|||||+++|+++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988877777765443 56677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++...++...+++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999888888876543 5799999999999987777888889999999999999999999999999999999
Q ss_pred HHHHH
Q 027856 172 TQIYR 176 (217)
Q Consensus 172 ~~~~~ 176 (217)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87753
No 61
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.2e-32 Score=194.59 Aligned_cols=162 Identities=31% Similarity=0.517 Sum_probs=143.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.++|+++|.+|+|||||+++|+++.+...+.++.+.... ..+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999888878777775553 4566778889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++... +.+++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999988888887653 358999999999999887778888899998887 7889999999999999999999
Q ss_pred HHHHH
Q 027856 171 LTQIY 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
.+.+.
T Consensus 162 ~~~i~ 166 (167)
T 1c1y_A 162 VRQIN 166 (167)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98763
No 62
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6e-32 Score=201.22 Aligned_cols=168 Identities=28% Similarity=0.372 Sum_probs=139.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcC--CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-hhhhhhhhhcC
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEF--SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-YRAITSAYYRG 85 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 85 (217)
.....+||+|+|.+|||||||+++|++... ...+ ++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 345679999999999999999999997543 3333 4466666677778899989999999999876 45567778899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 86 AVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
+|++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...++.++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988876542 2479999999999998767788888888888899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYRV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
++|++|++.+...
T Consensus 192 elf~~l~~~i~~~ 204 (211)
T 2g3y_A 192 ELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987643
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-32 Score=199.51 Aligned_cols=167 Identities=35% Similarity=0.473 Sum_probs=146.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..++..+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 35679999999999999999999999998888878777655 45566788889999999999887 77788899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC-CHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM-NVENAF 167 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~ 167 (217)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999988887654 3589999999999998877888899999999999999999999999 999999
Q ss_pred HHHHHHHHHHH
Q 027856 168 TEVLTQIYRVV 178 (217)
Q Consensus 168 ~~i~~~~~~~~ 178 (217)
++|++.+.+..
T Consensus 183 ~~l~~~i~~~~ 193 (196)
T 2atv_A 183 YELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999887654
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.2e-32 Score=198.05 Aligned_cols=166 Identities=27% Similarity=0.477 Sum_probs=145.4
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+....++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 3445789999999999999999999999988877777776554 445667788899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEE
Q 027856 88 GALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFM 153 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~ 153 (217)
++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++...++ .++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV 170 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence 999999999999999987 7988888764 38999999999999753 35778889999999887 899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 027856 154 ETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 154 ~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
++||++|.|++++|++|++.++
T Consensus 171 ~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 171 ECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998775
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=3.3e-31 Score=194.11 Aligned_cols=169 Identities=31% Similarity=0.483 Sum_probs=136.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+....++|+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 344679999999999999999999999988777766665443 4566678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
+++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....+++.+++...+++++++||++|.|++++|
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988876553 4789999999999976 5677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027856 168 TEVLTQIYRVVS 179 (217)
Q Consensus 168 ~~i~~~~~~~~~ 179 (217)
++|.+.+.+.+.
T Consensus 175 ~~l~~~~~~~~~ 186 (190)
T 3con_A 175 YTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999998876544
No 66
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1e-31 Score=196.01 Aligned_cols=163 Identities=28% Similarity=0.491 Sum_probs=142.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 5679999999999999999999999998877778877665 345667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEEEe
Q 027856 91 LVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 156 (217)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..+++.+++...+ ..++++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 99999999999998 67988887654 48999999999999742 4578888999998887 6899999
Q ss_pred cC-CCCCHHHHHHHHHHHHH
Q 027856 157 AL-ESMNVENAFTEVLTQIY 175 (217)
Q Consensus 157 a~-~~~~i~~~~~~i~~~~~ 175 (217)
|+ ++.|++++|+.+++.+.
T Consensus 163 a~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHH
T ss_pred ecCCCcCHHHHHHHHHHHHh
Confidence 99 68999999999998875
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=199.07 Aligned_cols=166 Identities=27% Similarity=0.483 Sum_probs=143.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 345679999999999999999999999998887778877665 3456678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEE
Q 027856 89 ALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFME 154 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 154 (217)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++...+ ..+++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 181 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998 68988887664 47999999999999742 4577888999998887 68999
Q ss_pred EecC-CCCCHHHHHHHHHHHHHH
Q 027856 155 TSAL-ESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 155 ~Sa~-~~~~i~~~~~~i~~~~~~ 176 (217)
+||+ ++.|++++|+.|++.+++
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHhh
Confidence 9999 689999999999988764
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.6e-31 Score=194.88 Aligned_cols=163 Identities=32% Similarity=0.528 Sum_probs=143.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|+++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3579999999999999999999999988877777776544 455667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEe
Q 027856 91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++...+. .++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 68888877653 8999999999999653 45677888889998887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 027856 157 ALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~~ 175 (217)
|++|.|++++|+++.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHS
T ss_pred CCCccCHHHHHHHHHHHHh
Confidence 9999999999999998775
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.4e-32 Score=203.07 Aligned_cols=172 Identities=28% Similarity=0.499 Sum_probs=147.4
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
......++|+++|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.+|||||++.+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 344568999999999999999999999998887777888777776666554 4448999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999999998887777999999999999887778888888898889999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027856 167 FTEVLTQIYRVVS 179 (217)
Q Consensus 167 ~~~i~~~~~~~~~ 179 (217)
|++|.+.+.+...
T Consensus 166 ~~~l~~~~~~~~~ 178 (218)
T 4djt_A 166 FLHLARIFTGRPD 178 (218)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHhcccc
Confidence 9999998876543
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=5.7e-31 Score=194.77 Aligned_cols=164 Identities=30% Similarity=0.487 Sum_probs=144.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45799999999999999999999999988877777776654 34667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEe
Q 027856 91 LVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+... +.+..+++..++...+. .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 67888887654 48999999999999764 45777888899999887 799999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027856 157 ALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~~~ 176 (217)
|++|.|++++|++|.+.+++
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988763
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=199.04 Aligned_cols=166 Identities=31% Similarity=0.488 Sum_probs=124.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999988777767765443 455677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcCC-cEEEEe
Q 027856 91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.... .+..+++..++...++ .++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 6888887654 578999999999997642 5677888899999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 027856 157 ALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~~~~~ 178 (217)
|++|.|++++|++|++.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887544
No 72
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=1.7e-30 Score=191.92 Aligned_cols=171 Identities=81% Similarity=1.220 Sum_probs=151.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+..++|+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999988888888888888888889999999999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 170 (217)
+|+|+.+..+++.+..|+..+......+.|+++++||+|+.+.+....+++..++...++.++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999888889888776555678999999999998767778888999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 027856 171 LTQIYRVVSRK 181 (217)
Q Consensus 171 ~~~~~~~~~~~ 181 (217)
.+.+.+...+.
T Consensus 163 ~~~~~~~~~~~ 173 (199)
T 2f9l_A 163 LTEIYRIVSQK 173 (199)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhhc
Confidence 99998765443
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-31 Score=191.28 Aligned_cols=162 Identities=32% Similarity=0.471 Sum_probs=140.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 358999999999999999999999988777767766544 3445678888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999988888888776542 47899999999999877778888888899989999999999999999999999
Q ss_pred HHHHH
Q 027856 170 VLTQI 174 (217)
Q Consensus 170 i~~~~ 174 (217)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98654
No 74
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=4.8e-32 Score=203.35 Aligned_cols=172 Identities=31% Similarity=0.548 Sum_probs=151.1
Q ss_pred CCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856 5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 5 ~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
.........+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence 33445667899999999999999999998888877777888888999989989999999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... ..+...++...++.++++||++|.|++
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999999998765 4889999999999976432 225666778889999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027856 165 NAFTEVLTQIYRVVS 179 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~ 179 (217)
++|++|.+.+.....
T Consensus 164 ~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 164 KPFLWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999998876543
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=211.48 Aligned_cols=166 Identities=51% Similarity=0.819 Sum_probs=142.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 46789999999999999999999999998888888888888888888999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856 90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (217)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998877778999999999999877777777788899999999999999999999999999
Q ss_pred HHHHHH
Q 027856 170 VLTQIY 175 (217)
Q Consensus 170 i~~~~~ 175 (217)
|.+.+.
T Consensus 190 l~~~l~ 195 (199)
T 3l0i_B 190 MAAEIK 195 (199)
T ss_dssp HTTTTT
T ss_pred HHHHHH
Confidence 987654
No 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=1.6e-30 Score=185.85 Aligned_cols=161 Identities=32% Similarity=0.539 Sum_probs=141.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.++|+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 48999999999999999999999988777766665443 55566788889999999999999888999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856 93 YDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++..+++...+++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999899988876653 4799999999999976 55678888999999999999999999999999999999
Q ss_pred HHHH
Q 027856 172 TQIY 175 (217)
Q Consensus 172 ~~~~ 175 (217)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=6.8e-32 Score=198.62 Aligned_cols=170 Identities=23% Similarity=0.252 Sum_probs=138.2
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-----------CcccceeEeEEEEE-EECCeEEEEEEEeCCChhh
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------SKSTIGVEFATRSI-RCDDKIVKAQIWDTAGQER 74 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~ 74 (217)
.......+||+++|.+|+|||||++.+.+.. ... +.+|.+.++....+ .+++..+.+.+|||||++.
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 3455778999999999999999997666543 333 22355555444444 5567788999999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc
Q 027856 75 YRAITSAYYRGAVGALLVYDVT------RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE 148 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 148 (217)
+...+..+++.+|++++|||++ +..+++.+..|+..+. ....+.|+++|+||+|+.+ .+..+++.+++...
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPE 163 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhc
Confidence 9999999999999999999999 5567777777777773 2335899999999999976 47888999999999
Q ss_pred CC-cEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027856 149 NT-FFMETSALESMNVENAFTEVLTQIYRVVSR 180 (217)
Q Consensus 149 ~~-~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 180 (217)
++ .++++||++|.|++++|++|.+.+.+...+
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 98 899999999999999999999999877643
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.4e-30 Score=193.57 Aligned_cols=164 Identities=32% Similarity=0.496 Sum_probs=137.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|++..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 357899999999999999999999999887777777665543 3667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEe
Q 027856 91 LVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+... +.+..++...++...+. .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 67888887654 48999999999999754 35677888888888887 799999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027856 157 ALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~~~ 176 (217)
|++|.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=1.8e-30 Score=190.87 Aligned_cols=167 Identities=28% Similarity=0.366 Sum_probs=137.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC--CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-hhhhhhhhhcCCc
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF--SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-YRAITSAYYRGAV 87 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d 87 (217)
...++|+++|.+|||||||+++|++... ...+ ++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 3469999999999999999999997433 3333 3456666667778899999999999999766 4556777888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (217)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...++.++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988877653 357899999999999876778888888888888899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 167 FTEVLTQIYRVV 178 (217)
Q Consensus 167 ~~~i~~~~~~~~ 178 (217)
|+++.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886544
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.5e-31 Score=194.49 Aligned_cols=163 Identities=29% Similarity=0.530 Sum_probs=126.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45699999999999999999999999887777676654432 23445666788899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccC----------CCHHHHHHHHHHcCC-cEEEEecC
Q 027856 91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRA----------VSTEDATAFAERENT-FFMETSAL 158 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 158 (217)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+. +..+++.+++...+. .++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999987 6988887765 3899999999999966433 477888889988886 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027856 159 ESMNVENAFTEVLTQIY 175 (217)
Q Consensus 159 ~~~~i~~~~~~i~~~~~ 175 (217)
+|.|++++|++|++.++
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1.2e-30 Score=193.49 Aligned_cols=163 Identities=31% Similarity=0.514 Sum_probs=138.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|.+|+|||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 34579999999999999999999999988877767764 34455666788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcCCc-EEEE
Q 027856 90 LLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAERENTF-FMET 155 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 155 (217)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.... .+..+++..++...++. ++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999986 7888888765 589999999999997643 27778888899998864 9999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 027856 156 SALESMNVENAFTEVLTQI 174 (217)
Q Consensus 156 Sa~~~~~i~~~~~~i~~~~ 174 (217)
||++|.|++++|++|++.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=1.1e-30 Score=192.65 Aligned_cols=166 Identities=16% Similarity=0.307 Sum_probs=129.9
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
..+....++|+|+|.+|+|||||+++|++..+.. .+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 4456778999999999999999999999999887 67788774433 333 334789999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCccCCCHHHHHHH------HHHcCCc
Q 027856 86 AVGALLVYDVTRHVTFENVERWLKELRDHTD--------SNIVIMLVGNKADLRHLRAVSTEDATAF------AERENTF 151 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~ 151 (217)
+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.... ..++.... +...++.
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeE
Confidence 9999999999999999999888888765421 278999999999997642 22222221 1346678
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 152 FMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 152 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
++++||++|.|++++|++|.+.+.+..
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888664
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=4.6e-29 Score=183.15 Aligned_cols=167 Identities=81% Similarity=1.214 Sum_probs=150.6
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+.+..++|+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..++
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 34567899999999999999999999999998888899999988889999999899999999999988888888899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856 88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
++++|+|..+..+++.+..|+..+........|+++++||+|+.+......+++..++...++.++++|++++.+++++|
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~ 183 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999888888888766555578999999999998766778888999999999999999999999999999
Q ss_pred HHHHHHH
Q 027856 168 TEVLTQI 174 (217)
Q Consensus 168 ~~i~~~~ 174 (217)
+.|.+.+
T Consensus 184 ~~l~~~i 190 (191)
T 1oix_A 184 QTILTEI 190 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998765
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=185.38 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=130.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCc-CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNE-FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
....++|+++|.+|+|||||+++|++.. +...+.+|.+ .....+.+++ +.+.+|||||++.+...+..++..+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4468999999999999999999999987 4555666665 3344555554 689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCC
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALES 160 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 160 (217)
+++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ....+++.+... ..++.++++||++|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999888888776543 4799999999999975 345566665553 23567999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQIYR 176 (217)
Q Consensus 161 ~~i~~~~~~i~~~~~~ 176 (217)
.|++++|++|.+.+.+
T Consensus 172 ~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQT 187 (190)
T ss_dssp BTHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999987653
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=7.9e-29 Score=180.85 Aligned_cols=160 Identities=19% Similarity=0.327 Sum_probs=129.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|+++. ...+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999988 55666776644 33444554 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999888888776542 257999999999999763 23444433322 235679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYRV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
++|+++.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887644
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.8e-29 Score=183.76 Aligned_cols=160 Identities=20% Similarity=0.335 Sum_probs=129.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+|+|.+|+|||||+++|++..+...+.+|.+.++.. +... .+.+.+|||||++.+...+..++..+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 457999999999999999999999999887777887766543 3333 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+... ...++...... ..++.++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999888888776532 258999999999999763 22333322221 134569999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYR 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
++|++|.+.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999976643
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=4e-30 Score=183.86 Aligned_cols=156 Identities=18% Similarity=0.353 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|+++.+.. +.+|.+.. ...+... .+.+.+|||||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 44565532 3333333 378999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHH
Q 027856 94 DVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVENAF 167 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 167 (217)
|++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999988888877553 2357899999999999663 23333322211 134569999999999999999
Q ss_pred HHHHHHHHH
Q 027856 168 TEVLTQIYR 176 (217)
Q Consensus 168 ~~i~~~~~~ 176 (217)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987653
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.3e-29 Score=182.34 Aligned_cols=159 Identities=18% Similarity=0.317 Sum_probs=126.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.++.+.. +.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 346899999999999999999999988754 44565543 34444554 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 164 (217)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...++.++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999998888877765542 2589999999999997632 233332222 2245679999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYR 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.9e-29 Score=186.18 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=122.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|.++.+.. +.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 346899999999999999999999988643 44565544 34555666 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----------------cCCcE
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----------------ENTFF 152 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 152 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++.+++.. .+..+
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999988888876542 35799999999999975 5667777776652 23569
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q 027856 153 METSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 153 ~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
+++||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999754
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=5.5e-29 Score=182.56 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=127.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|.++.+.. +.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 345799999999999999999999988753 44565553 45556666 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH------------cCCcEEEEec
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER------------ENTFFMETSA 157 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 157 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++.+.+.. .++.++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999988888876532 25799999999999976 4566666665442 3457999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027856 158 LESMNVENAFTEVLTQ 173 (217)
Q Consensus 158 ~~~~~i~~~~~~i~~~ 173 (217)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999753
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.8e-29 Score=183.64 Aligned_cols=158 Identities=20% Similarity=0.350 Sum_probs=125.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+....++|+++|.+|+|||||+++|++..+ ..+.++.+... ..+.+++ +.+.+|||||++.+...+..++..+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 345689999999999999999999999987 44456665443 3444555 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCC
Q 027856 89 ALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 162 (217)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+... ..++.++++||++|.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999888888776542 35899999999999965 234444444332 2345799999999999
Q ss_pred HHHHHHHHHHH
Q 027856 163 VENAFTEVLTQ 173 (217)
Q Consensus 163 i~~~~~~i~~~ 173 (217)
++++|++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999754
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9.4e-29 Score=180.71 Aligned_cols=158 Identities=20% Similarity=0.355 Sum_probs=125.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|+++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.+...+..++..+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 34699999999999999999999988776 455665533 33444555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+... ..++.++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999988888886642 25799999999999975 334555544432 235679999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 165 NAFTEVLTQIY 175 (217)
Q Consensus 165 ~~~~~i~~~~~ 175 (217)
++|++|++.+.
T Consensus 167 ~l~~~l~~~~~ 177 (187)
T 1zj6_A 167 QGLEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=1.2e-28 Score=179.41 Aligned_cols=159 Identities=22% Similarity=0.344 Sum_probs=124.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45799999999999999999999988653 344565543 33444554 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 164 (217)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++..+... ..++.++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999988888776543 23578999999999997632 3333333221 234569999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYR 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
++|+++.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=6.6e-30 Score=186.50 Aligned_cols=163 Identities=17% Similarity=0.363 Sum_probs=121.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--cCCCCCcccceeEeEEEEEEE---CCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRC---DDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.++|+++|++|||||||+++|++. .+...+.+|.+.++....+.+ ++..+.+.+|||+|++.+..++..++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 455556677777766655543 335678999999999999999999999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC---HHHHHHHHHHcCCc----EEEEecCC
Q 027856 88 GALLVYDVTRH-VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS---TEDATAFAERENTF----FMETSALE 159 (217)
Q Consensus 88 ~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 159 (217)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+.+. .++...++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 57888889999887654 478999999999997643221 23334555556776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 027856 160 SM-NVENAFTEVLTQIYR 176 (217)
Q Consensus 160 ~~-~i~~~~~~i~~~~~~ 176 (217)
|. ++.++++.|.+.+.+
T Consensus 161 ~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 161 ESDALAKLRKTIINESLN 178 (184)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 96 999999999877654
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=1.3e-29 Score=186.23 Aligned_cols=158 Identities=16% Similarity=0.356 Sum_probs=119.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|+++.+.. +.+|.+ .....+...+ +.+.+|||||++.+...+..++..+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 457999999999999999999999887653 345554 3333444444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999888888775532 257999999999999663 23333322211 134569999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 165 NAFTEVLTQIY 175 (217)
Q Consensus 165 ~~~~~i~~~~~ 175 (217)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999997764
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=5e-28 Score=191.76 Aligned_cols=162 Identities=31% Similarity=0.514 Sum_probs=142.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||||+++|+++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999988777777765444 4556778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEec
Q 027856 92 VYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSA 157 (217)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 157 (217)
|||++++.+++.+. .|+..+..... +.|+++|+||+|+... +.+..+++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999886 68888877653 8999999999999653 46778889999999987 8999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027856 158 LESMNVENAFTEVLTQIY 175 (217)
Q Consensus 158 ~~~~~i~~~~~~i~~~~~ 175 (217)
++|.|++++|+.|.+.++
T Consensus 312 ~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999998876
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=1.8e-28 Score=178.40 Aligned_cols=160 Identities=19% Similarity=0.352 Sum_probs=125.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|+++.+ ..+.++.+.. ...+.+++ +.+.+|||||++.+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998877 4455666643 33444554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.... .++.++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999888888876543 358999999999999653 344444443322 23469999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYRV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
++|++|.+.+.+.
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=6.1e-29 Score=183.12 Aligned_cols=162 Identities=18% Similarity=0.219 Sum_probs=121.3
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEE--EEEE-CCeEEEEEEEeCCChhhhhhhh---hh
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR--SIRC-DDKIVKAQIWDTAGQERYRAIT---SA 81 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~Dt~G~~~~~~~~---~~ 81 (217)
.+....+||+++|.+|||||||++++.+... .. ++.+.+.... ...+ ++..+.+.+|||||++.+.... ..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 4566789999999999999999998887533 22 3333333322 2233 2566899999999999987766 89
Q ss_pred hhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------ccCCCHHHHHHHHH----Hc
Q 027856 82 YYRGAVGALLVYDVTRH--VTFENVERWLKELRDHTDSNIVIMLVGNKADLRH-------LRAVSTEDATAFAE----RE 148 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~ 148 (217)
+++++|++++|||++++ .++..+..|+..+... ..+.|+++|+||+|+.. .+.+..++...++. ..
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 99999999999999997 6666666777766433 35899999999999754 23445555667777 66
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 149 NTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 149 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
++.|+++||++ .|++++|+.+++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 78899999999 99999999998764
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=3.4e-29 Score=183.33 Aligned_cols=160 Identities=18% Similarity=0.298 Sum_probs=126.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||+++|.++.+.. +.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999999887654 44555533 33444454 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999998888877775532 3579999999999997632 233332222 2234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYRV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
++|+++.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=4.5e-31 Score=195.66 Aligned_cols=162 Identities=32% Similarity=0.532 Sum_probs=136.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|+++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999999888777666664433 444556777788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcCC-cEEEEe
Q 027856 91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.. .+..+++..++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999886 78888776543 78999999999997542 4555667777888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 027856 157 ALESMNVENAFTEVLTQI 174 (217)
Q Consensus 157 a~~~~~i~~~~~~i~~~~ 174 (217)
|++|.|++++|++|++.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=3.4e-27 Score=177.77 Aligned_cols=168 Identities=19% Similarity=0.161 Sum_probs=120.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh------hhh---hhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ------ERY---RAITSA 81 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~~~~ 81 (217)
...++|+|+|.+|+|||||+++|++..+.....+..+.+.....+...+ ..+.+|||||. +.. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4579999999999999999999999877533323333333333444444 68999999997 321 122334
Q ss_pred hhcCCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH---HHHHHHHHcC--CcEEE
Q 027856 82 YYRGAVGALLVYDVTRHVTFEN--VERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE---DATAFAEREN--TFFME 154 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 154 (217)
++..+|++++|+|++++.++.. ...|+..+.... .+.|+++|+||+|+.+.+.+..+ .+..++...+ +.+++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5788899999999999877642 234566555432 37899999999999876666554 4556666666 78999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhhh
Q 027856 155 TSALESMNVENAFTEVLTQIYRVVSRK 181 (217)
Q Consensus 155 ~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 181 (217)
+||++|.|++++|++|.+.+.+.+...
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~ 210 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAES 210 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998776544
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1.1e-27 Score=171.78 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=116.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh------hhhhhhhc--
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR------AITSAYYR-- 84 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-- 84 (217)
.++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++ ..+.+|||||+..+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999999876555445555555555666665 588999999987653 33455554
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
.+|++++|+|+++... ...|+..+.. .+.|+++|+||+|+...+.+.. +.++++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999988643 3456666654 3789999999999865444432 3567777888999999999999999
Q ss_pred HHHHHHHHHH
Q 027856 165 NAFTEVLTQI 174 (217)
Q Consensus 165 ~~~~~i~~~~ 174 (217)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=188.85 Aligned_cols=167 Identities=29% Similarity=0.380 Sum_probs=123.1
Q ss_pred CCCCCeeeEEEEEcCC---------CCCHHHHHHHHhh---CcCCCCCcccc-eeEeEEEE--------------EEECC
Q 027856 7 DDDYDYLFKVVLIGDS---------GVGKSNLLSRFTR---NEFSLESKSTI-GVEFATRS--------------IRCDD 59 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~ 59 (217)
.......+||+|+|.+ |||||||+++|++ ..+...+.++. +.++.... ..+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3445678999999999 9999999999999 45555554443 33322211 12456
Q ss_pred eEEEEEEEe-----------------------CCChhhhhhhhhhhhc---------------------CCcEEEEEEEC
Q 027856 60 KIVKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GAVGALLVYDV 95 (217)
Q Consensus 60 ~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~ii~v~d~ 95 (217)
..+.+.+|| ++|++.+..++..++. ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 778999999 5666666667777776 79999999999
Q ss_pred CCh--hhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-cCCcEEEEecCCCCCHHHHHHHHH
Q 027856 96 TRH--VTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 96 ~~~--~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
+++ .+++.+..|+..+... ...+.|+++|+||+|+...+.+ +++.+++.. .++.++++||++|.|++++|++|+
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 998 9999999999888765 3357999999999999654433 566777766 478899999999999999999998
Q ss_pred HHHH
Q 027856 172 TQIY 175 (217)
Q Consensus 172 ~~~~ 175 (217)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8763
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=2.5e-27 Score=171.50 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=121.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|++..+...+.++.+.+.....+.+++. .+.+|||||++.+...+..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45789999999999999999999999887776666666666666667774 6789999999999988888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-------C--CcEEEEecCCCC
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-------N--TFFMETSALESM 161 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~ 161 (217)
+|+|++++......+ ++..+. ..+.|+++|+||+|+.+. ..++........ + +.++++||++|.
T Consensus 84 ~v~d~~~~~~~~~~~-~l~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE-AINHAK---AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp EEEETTCCCCHHHHH-HHHHHG---GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred EEEECCCCCcHHHHH-HHHHHH---hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 999998843322221 222222 247899999999999653 233333333222 2 479999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQIYRVV 178 (217)
Q Consensus 162 ~i~~~~~~i~~~~~~~~ 178 (217)
|++++|++|.+.+...+
T Consensus 157 gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 157 GLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhhhhc
Confidence 99999999998776543
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=1.5e-27 Score=177.83 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=113.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe-EEEEEEEeCCChhhhhh-hhhhhhcCCcE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK-IVKAQIWDTAGQERYRA-ITSAYYRGAVG 88 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ 88 (217)
...++|+++|++|+|||||+++|++..+...+. +.+.+... +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 456899999999999999999999998877664 33333333 555543 57899999999999987 78889999999
Q ss_pred EEEEEECCChh-hHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCccCCC--HHHHHHHHH----------------
Q 027856 89 ALLVYDVTRHV-TFENVER-WLKELRDH--TDSNIVIMLVGNKADLRHLRAVS--TEDATAFAE---------------- 146 (217)
Q Consensus 89 ii~v~d~~~~~-s~~~~~~-~~~~l~~~--~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~---------------- 146 (217)
+++|||+++.. ++..... |...+... ...+.|+++|+||+|+....... .+.+.....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 3544443 44444432 23578999999999997643210 111111111
Q ss_pred -----------------Hc--CCcEEEEecCCC------CCHHHHHHHHHHH
Q 027856 147 -----------------RE--NTFFMETSALES------MNVENAFTEVLTQ 173 (217)
Q Consensus 147 -----------------~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~ 173 (217)
.. ++.|+++||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 566999999999 9999999999865
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=7.3e-27 Score=183.27 Aligned_cols=160 Identities=21% Similarity=0.306 Sum_probs=126.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCC---CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh-----hhhhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFS---LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY-----RAITSAYY 83 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~ 83 (217)
..+||+++|.+|+|||||+++|+++... ..+.+|.+.... .+.+++ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987432 234455554443 444444 479999999999888 67888899
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--ccC----CCHHHHHHHHHHcC---CcE
Q 027856 84 RGAVGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRH--LRA----VSTEDATAFAEREN---TFF 152 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 152 (217)
+++|++++|||++++.+++.+..|...+.... .++.|+++|+||+|+.. .+. +..+++.+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877765554432 35899999999999976 333 45577888888887 689
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 027856 153 METSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 153 ~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+++||++ .++.++|..+++.+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 889999998886543
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=1.1e-26 Score=170.70 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=111.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----------QERYRAI 78 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 78 (217)
+....++|+++|.+|+|||||+++|++..+...+.++.+.+........++ .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 445689999999999999999999999886665556665555555555554 689999999 7778877
Q ss_pred hhhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH--HHHHH-HHHHcCCcE
Q 027856 79 TSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST--EDATA-FAERENTFF 152 (217)
Q Consensus 79 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~ 152 (217)
+..++..+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+...+++.. +++.+ +....+..+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 88887766 9999999999887766532 2233332 3789999999999976443322 22222 222245789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 027856 153 METSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 153 ~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+++||++|.|++++|++|.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999987653
No 108
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=5.6e-27 Score=171.35 Aligned_cols=157 Identities=22% Similarity=0.231 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC-----------hhhhhhhhhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG-----------QERYRAITSAY 82 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~ 82 (217)
++|+++|.+|+|||||+++|++..+...+.++.+.. ...+.+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999998776665554433 3333333 678999999 67777777777
Q ss_pred hcC-CcEEEEEEECCChhhHHHH-HHHHHH---------HHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc
Q 027856 83 YRG-AVGALLVYDVTRHVTFENV-ERWLKE---------LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF 151 (217)
Q Consensus 83 ~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~---------l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (217)
++. ++++++++++.+..++..+ ..|... +......+.|+++|+||+|+.... .++.++++...+.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 6666666666666666665 455432 122222479999999999997643 55677788877764
Q ss_pred -------EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027856 152 -------FMETSALESMNVENAFTEVLTQIYRVVS 179 (217)
Q Consensus 152 -------~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 179 (217)
++++||++|.|++++|+++.+.+.+...
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998876543
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.1e-26 Score=168.12 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=123.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh------hhhhhhhc-
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR------AITSAYYR- 84 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 84 (217)
..++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++ ..+.+|||||++.+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999999776555556666666666676665 688999999987653 34555554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856 85 -GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 85 -~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (217)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.....+. .+..+++...++.++++||+++.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999875 3445567776655 378999999999997644443 3567777888899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIYRV 177 (217)
Q Consensus 164 ~~~~~~i~~~~~~~ 177 (217)
+++|+++.+.+.+.
T Consensus 157 ~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 157 EELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999877543
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.7e-26 Score=180.18 Aligned_cols=158 Identities=18% Similarity=0.333 Sum_probs=118.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+|+|.+|+|||||+++|++..+.... +|.+... ..+...+ +.+.||||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999998865443 4544433 3333444 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~ 165 (217)
|||++++.++..+..|+..+... ...++|+++|+||+|+.+.. ..++....... .+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999999887766665443 33589999999999997632 33333332222 245699999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 166 AFTEVLTQIYR 176 (217)
Q Consensus 166 ~~~~i~~~~~~ 176 (217)
+|++|++.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.2e-25 Score=176.35 Aligned_cols=166 Identities=18% Similarity=0.118 Sum_probs=125.5
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhh----------
Q 027856 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQER---------- 74 (217)
Q Consensus 6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------- 74 (217)
...++...-.|+++|.+|+|||||+|+|++..+..... +..+........... ....+.||||||...
T Consensus 3 ~~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~ 81 (308)
T 3iev_A 3 HHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHS 81 (308)
T ss_dssp ----CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHH
Confidence 34566778899999999999999999999998764332 222222223333333 136899999999733
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcE
Q 027856 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFF 152 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~ 152 (217)
+......++..+|++++|+|++++.+..+...|+..+... +.|+++|+||+|+........+....+....+ ..+
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 3456677889999999999999988888777777777663 78999999999997434555666777777765 779
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 027856 153 METSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 153 ~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+++||++|.|++++|+++.+.+.
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCc
Confidence 99999999999999999987763
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=6.9e-26 Score=161.20 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhhhhhcC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITSAYYRG 85 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 85 (217)
++|+++|++|+|||||+++|.+..+.. ...++.+.+.....+..++. .+.+|||||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999987542 23334444455555666664 789999999876 44556678899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 027856 86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 164 (217)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. +++.+++ ..++ .++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998644322 122222322 378999999999997642 2334444 5666 79999999999999
Q ss_pred HHHHHHHHHH
Q 027856 165 NAFTEVLTQI 174 (217)
Q Consensus 165 ~~~~~i~~~~ 174 (217)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=7e-26 Score=173.40 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=120.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh------hhhhhh-
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA------ITSAYY- 83 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~- 83 (217)
...++|+++|++|+|||||+++|++..+.....+..+.+.....+...+ ..+.+|||||...+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4578999999999999999999999876554445555555555555555 6899999999766543 224454
Q ss_pred -cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856 84 -RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN 162 (217)
Q Consensus 84 -~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
..+|++++|+|+++.++. ..|...+... +.|+++|+||+|+...+.+.. +...++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999987543 3455555543 799999999999976544442 36778888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 i~~~~~~i~~~~~ 175 (217)
++++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 114
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=1.4e-25 Score=186.88 Aligned_cols=162 Identities=17% Similarity=0.358 Sum_probs=125.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|++..+.. +.+|.+.... .+.+.+ +.+.+|||||++.+...+..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 357999999999999999999999998654 3356654433 333333 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856 91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 164 (217)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+. ...++...... ..++.++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999988888775533 258999999999999762 23333333221 123459999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027856 165 NAFTEVLTQIYRVVS 179 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~ 179 (217)
++|++|.+.+.+...
T Consensus 473 ~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999987654443
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1.4e-25 Score=164.45 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=116.8
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhh
Q 027856 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----------QERY 75 (217)
Q Consensus 6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~ 75 (217)
...+....++|+++|.+|+|||||+++|++..... ..++.+.+........+. .+.+||||| ++.+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence 34455678999999999999999999999988433 334544444444444444 577999999 6677
Q ss_pred hhhhhhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc--CCCHHHHHHHHHHc-C
Q 027856 76 RAITSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR--AVSTEDATAFAERE-N 149 (217)
Q Consensus 76 ~~~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~-~ 149 (217)
...+..++..+ |++++|+|+++..+.... .+...+... +.|+++|+||+|+.+.. ....+++..++... +
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 77777777665 999999999876443322 222223222 78999999999997532 22334455555553 4
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 150 TFFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 150 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
+.++++||++|.|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999999987753
No 116
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=2.8e-27 Score=184.50 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=122.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCC---CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh---hhhhhhcCCcE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA---ITSAYYRGAVG 88 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~ 88 (217)
||+++|..|+|||||++++.++.++. .+.+|.+.+... ++ ..+.+++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988764432 245677666543 22 347999999999999964 46889999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-------cCCCHHHHHHHHHH----cCCcEEEE
Q 027856 89 ALLVYDVTRH--VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-------RAVSTEDATAFAER----ENTFFMET 155 (217)
Q Consensus 89 ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 155 (217)
+|+|||++++ .+...+..|+..+... .++.|+++++||+|+... +.+..++++++++. .++.|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3334444445555443 358999999999999763 24555666667765 57889999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhhhhhc
Q 027856 156 SALESMNVENAFTEVLTQIYRVVSRKALE 184 (217)
Q Consensus 156 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~ 184 (217)
||++ .++.++|..+++.+......-+..
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~~le~~ 182 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELSFLENM 182 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHHHHHHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 9998 589999999998877655544333
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=2.6e-26 Score=165.72 Aligned_cols=154 Identities=21% Similarity=0.201 Sum_probs=113.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh----h--h--hhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR----A--I--TSAY 82 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~--~--~~~~ 82 (217)
..++|+++|.+|+|||||+++|.+..... ...++.+.+.....+.+++. .+.+|||||.+.+. . . ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999876532 22344445555666777764 57899999975321 1 1 1235
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856 83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
++.+|++++|+|++++.+++. ..|+..+......++|+++|+||+|+.+... .++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999999887653 4677777666555799999999999854211 11122456799999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 i~~~~~~i~~~~~ 175 (217)
++++|++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=2.7e-26 Score=192.69 Aligned_cols=164 Identities=21% Similarity=0.257 Sum_probs=124.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEE------E--EECCeEEEEEEEeCCChhhhhhhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS------I--RCDDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
.....+||+++|.+|||||||+++|++..+...+.+|.+.+..... + ..++..+.+.+|||||++.+..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3456799999999999999999999999988777788777665442 1 1123357899999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES 160 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
.+++.+|++++|+|+++. +.+..|+..+.... .+.|+++|+||+|+...+.+..++++..+...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999765 44567888887765 37999999999999887778888888888888999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQIYR 176 (217)
Q Consensus 161 ~~i~~~~~~i~~~~~~ 176 (217)
.|++++|+.+.+.+.+
T Consensus 193 ~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLH 208 (535)
T ss_dssp --CTTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999987764
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.7e-25 Score=167.75 Aligned_cols=167 Identities=15% Similarity=0.117 Sum_probs=113.3
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCC----------hhhhh
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAG----------QERYR 76 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~~ 76 (217)
.+....++|+|+|.+|+|||||+++|++.........+.+.+.......+. .....+.|||||| .+.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 344567999999999999999999999987322222333333333334443 3346889999999 45555
Q ss_pred hhhhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHHH----
Q 027856 77 AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAER---- 147 (217)
Q Consensus 77 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---- 147 (217)
.....++.. +|++++|+|++++.+.. ...++..+.. .+.|+++|+||+|+...... ..++..+....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 666666655 78899999998764422 2345555554 37899999999999763321 11222222222
Q ss_pred ---cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 148 ---ENTFFMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 148 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
.+.+++++||++|.|++++|++|.+.+....
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4567999999999999999999998876543
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=1e-25 Score=172.21 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhhhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA----------ITSAYY 83 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~ 83 (217)
.+|+++|.+|||||||+|+|++........++.+.+.....+.+++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 58999999999999999999998766555566677777777777774 889999999765542 455666
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856 84 --RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM 161 (217)
Q Consensus 84 --~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (217)
..+|++++|+|+++.+... .+...+.. .+.|+++|+||+|+...+.... ....+....+++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~---~l~~~l~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHL---YLTSQLFE---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHH---HHHHHHTT---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHH---HHHHHHHH---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 8999999999999865443 23333333 3799999999999865433322 2445677789999999999999
Q ss_pred CHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQ 173 (217)
Q Consensus 162 ~i~~~~~~i~~~ 173 (217)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999764
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=1.6e-25 Score=172.40 Aligned_cols=153 Identities=17% Similarity=0.158 Sum_probs=114.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh------hhhhhhhc-
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR------AITSAYYR- 84 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 84 (217)
..++|+++|++|||||||+++|++........+..+ .......+.. ...+.+|||||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~t--v~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVT--VERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCC--CSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCc--EEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 358999999999999999999999764433334333 3333333444 5689999999987664 44555664
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856 85 -GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 85 -~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (217)
.+|++++|+|+++.+.. ..|...+.. .+.|+++|+||+|+...+.+. .+...++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345555554 389999999999996544443 3456777888999999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 164 ENAFTEVLTQI 174 (217)
Q Consensus 164 ~~~~~~i~~~~ 174 (217)
+++|+++.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=8.6e-25 Score=168.75 Aligned_cols=155 Identities=20% Similarity=0.152 Sum_probs=120.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh------hhhhhh--c
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA------ITSAYY--R 84 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~ 84 (217)
.++|+++|++|+|||||+++|++..+.....++.+.+.....+.+.+. .+.+|||||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999998876556667777777777777764 689999999766544 455555 7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
++|++++|+|+++... ...|...+.... ..|+++|+||+|+.+.+..... ...+...++++++++||++|.|+.
T Consensus 81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence 8999999999988642 234444444431 3999999999998654333332 667778889999999999999999
Q ss_pred HHHHHHHHHHH
Q 027856 165 NAFTEVLTQIY 175 (217)
Q Consensus 165 ~~~~~i~~~~~ 175 (217)
++|+.+.+.+.
T Consensus 155 ~l~~~i~~~~~ 165 (271)
T 3k53_A 155 ELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=4.9e-25 Score=170.23 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=115.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh----------hhhhhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR----------AITSAY 82 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~ 82 (217)
.++|+++|.+|+|||||+|+|++..+.....++.+.+.....+...+ ..+.+|||||...+. .....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999886555556666666666666655 467899999976554 222333
Q ss_pred h--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856 83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES 160 (217)
Q Consensus 83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
+ ..+|++++|+|+++.+... .+...+... +.|+++|+||+|+.+.+... .....+....+++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHH---HHHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 7999999999998865443 344444443 78999999999986543322 1245667778899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027856 161 MNVENAFTEVLTQI 174 (217)
Q Consensus 161 ~~i~~~~~~i~~~~ 174 (217)
.|++++|++|.+.+
T Consensus 154 ~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 154 RGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987654
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.7e-25 Score=167.19 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=105.7
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC---CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhh
Q 027856 6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE---SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAY 82 (217)
Q Consensus 6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 82 (217)
........++|+++|++|+|||||+++|++..+... +.++.+.++ ....+.+|||||++.+...+..+
T Consensus 5 ~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~ 75 (218)
T 1nrj_B 5 GIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDY 75 (218)
T ss_dssp -----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHH
T ss_pred CCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHH
Confidence 334456679999999999999999999999886542 333332221 33578999999999998888888
Q ss_pred hcC----CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCccCCC------HHHHHHHHHH
Q 027856 83 YRG----AVGALLVYDVT-RHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVS------TEDATAFAER 147 (217)
Q Consensus 83 ~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~ 147 (217)
+.. +|++++|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+.....+. .+++..++..
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 155 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 877 89999999999 888888887877777554 33589999999999997754433 3445666666
Q ss_pred cCCcEEEEecCCCCC
Q 027856 148 ENTFFMETSALESMN 162 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~ 162 (217)
.+..++++||++|.+
T Consensus 156 ~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHC--------
T ss_pred Hhccccccccccccc
Confidence 777899999998865
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=3.5e-24 Score=175.62 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=117.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAIT 79 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 79 (217)
+..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45799999999999999999999998764 233344445555555666664 5899999997 4454443
Q ss_pred h-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-HH----cCCcEE
Q 027856 80 S-AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-ER----ENTFFM 153 (217)
Q Consensus 80 ~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~ 153 (217)
. .++..+|++++|+|++++.+.++. .|...+.. .++|+++|+||+|+.+.+....++..+.. .. .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 477889999999999998887765 46666554 37999999999999875554444443322 22 367899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 027856 154 ETSALESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 154 ~~Sa~~~~~i~~~~~~i~~~~~~~ 177 (217)
++||++|.|++++|+.+.+.+.+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877654
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=4.4e-25 Score=179.04 Aligned_cols=190 Identities=17% Similarity=0.154 Sum_probs=130.6
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-------
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI------- 78 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------- 78 (217)
+.+....++|+++|.+|+|||||+++|++..+.. ...+..+.+.....+.+.+.. .+.+|||||++.+...
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~ 106 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEK 106 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHH
Confidence 3455678999999999999999999999988642 333444455555666665542 8899999998766443
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL 158 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
...++..+|++++|+|++... ....|+..+... +.|+++|+||+|+...... +..+++...++++++++||+
T Consensus 107 ~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred HHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence 355788999999999983332 235677777665 8899999999999775443 55666666778899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCcccccc
Q 027856 159 ESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVK 210 (217)
Q Consensus 159 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (217)
+|.|++++|++|.+.+.+. .+..-.....++++.+-+..+.+...+|
T Consensus 179 tg~gI~eL~~~L~~~l~~~-----~e~~l~~dLv~~gd~v~lv~pid~~~pk 225 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD-----EEIPYLGDLIDGGDLVILVVPIDLGAPK 225 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC-----CCCCSCSCCCCTTCCEEEECCCSCCSST
T ss_pred CCCCHHHHHHHHHHhhhhh-----ccCcchhhccccCceEEEEeeccccCcC
Confidence 9999999999999877543 1111122356667777776666555543
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=5.6e-23 Score=164.39 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=121.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR---------AITSA 81 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 81 (217)
...++|+++|.+|+|||||+++|++........+..+.......+...+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999999875332223333333334444443 578999999964321 12224
Q ss_pred hhcCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856 82 YYRGAVGALLVYDVTRHV--TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+..... .++...++...+.+++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 556799999999998876 67777788888877554 799999999999976332 2445666667788999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~~~~~ 178 (217)
|+|++++|++|.+.+....
T Consensus 320 g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999886553
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=9.9e-24 Score=173.86 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=121.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----------QERYRAI 78 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 78 (217)
....++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++. .+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 345799999999999999999999987532 233344444444455666664 789999999 5667665
Q ss_pred hh-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-----CCcE
Q 027856 79 TS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-----NTFF 152 (217)
Q Consensus 79 ~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~ 152 (217)
.. .+++.+|++++|+|+++..+... ..|...+.. .++|+++|+||+|+.+.+....++..+.+... ++++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 44 47889999999999988654332 345555544 37999999999999876667677777776654 5789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 153 METSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 153 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
+++||++|.|++++|+.+.+.+.+..
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998776554
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=1.6e-23 Score=172.45 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=99.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh--------hhhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT--------SAYY 83 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 83 (217)
.++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+++ +.+.+|||||...+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 588999999999999999999998643 23334455555556666776 579999999987655333 3467
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856 84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (217)
..+|++++|+|++++.+++.+..+...+.... +.|+++|+||+|+...... +.+.+......+++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence 89999999999999887654333333333332 7899999999999764432 223333332467999999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIY 175 (217)
Q Consensus 164 ~~~~~~i~~~~~ 175 (217)
+++|++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=3.6e-23 Score=161.56 Aligned_cols=156 Identities=21% Similarity=0.182 Sum_probs=109.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------YRAITSA 81 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~ 81 (217)
....+|+++|.+|+|||||+|+|++..+.... .+..+.......+... ..++.||||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 45578999999999999999999999876432 2222222222223333 36899999999654 4556667
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-c-CCcEEEEecCC
Q 027856 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-E-NTFFMETSALE 159 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~Sa~~ 159 (217)
+++.+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+..... +....... . ...++++||++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred HHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence 8899999999999988755432 22334554432 4789999999999865322 02222222 2 34699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~ 174 (217)
|.|++++|+.+.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998654
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=2.8e-23 Score=164.44 Aligned_cols=157 Identities=20% Similarity=0.185 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----hhhhhhhhh---cCC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----YRAITSAYY---RGA 86 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~---~~~ 86 (217)
.+|+++|.+|||||||+++|++........+..+.......+.+++. ..+.+|||||... +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999987643322233333333444555442 4789999999643 223434444 459
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcEEEEecCC
Q 027856 87 VGALLVYDVTR---HVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFFMETSALE 159 (217)
Q Consensus 87 d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 159 (217)
+++++|+|+++ +.+++.+..|+.++..+.. .++|+++|+||+|+... .+..+++..... ..++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7788888889999887642 47999999999998652 234556666665 6799999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQIY 175 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~~ 175 (217)
+.|++++|++|.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 314 REGLRELLFEVANQLE 329 (342)
T ss_dssp SSTTHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998764
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=2.4e-22 Score=164.81 Aligned_cols=153 Identities=21% Similarity=0.274 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhhhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER---------YRAITSAYY 83 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 83 (217)
.+|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++. .+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 589999999999999999999987542 33344445555566666764 679999999653 345667789
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH-HHHHHHcCC-cEEEEecCCCC
Q 027856 84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA-TAFAERENT-FFMETSALESM 161 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~ 161 (217)
+.+|++++|+|+.++.+..+. .+...+.. .++|+++|+||+|+.+. . ..+. .++. ..++ .++++||++|.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~-~i~~~l~~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE-SLADFLRK---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH-HHHHHHHH---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence 999999999999876554321 12222222 27899999999998542 0 1222 3333 4565 69999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027856 162 NVENAFTEVLTQIYR 176 (217)
Q Consensus 162 ~i~~~~~~i~~~~~~ 176 (217)
|+.++|+++.+.+.+
T Consensus 152 gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 152 NLDTMLETIIKKLEE 166 (439)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccc
Confidence 999999999988764
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=1e-22 Score=167.88 Aligned_cols=153 Identities=21% Similarity=0.250 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChh-hhh--------hhhhhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-RYR--------AITSAY 82 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~--------~~~~~~ 82 (217)
.++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||.. .+. .....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999998643 23334555666666777776 578999999976 443 223457
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856 83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
+..+|++++|+|++++.+++..+ +++.+ .+.|+++|+||+|+... ...+++..++ ..+.+++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 88999999999999987766543 33333 37899999999999652 4445554443 2446899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIYR 176 (217)
Q Consensus 163 i~~~~~~i~~~~~~ 176 (217)
++++|++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999997764
No 134
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=5.6e-22 Score=164.01 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=112.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCc-------CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSA 81 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 81 (217)
.....++|+++|+.++|||||+++|++.. +..+.....+.+.....+.+++ ..+.+|||||++.|...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 33457999999999999999999999876 2222323333343334444555 68999999999999988889
Q ss_pred hhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHc----CCcE
Q 027856 82 YYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAERE----NTFF 152 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~ 152 (217)
.+..+|++++|+|+++ +.+.+.+. .+.. .++|+++|+||+|+.+... ...+++.+++... +.++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 9999999999999988 44443332 2222 2688899999999975321 1233444555544 5679
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 027856 153 METSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 153 ~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+++||++|.|+.+++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998775
No 135
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=2.1e-21 Score=147.13 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=107.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc--cceeEeEEEEEEECCeEEEEEEEeCCC-----------hhhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--TIGVEFATRSIRCDDKIVKAQIWDTAG-----------QERY 75 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~ 75 (217)
+....++|+++|.+|+|||||+++|++..+.....+ +.+.......+.+++ ..+.+||||| ...+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 445679999999999999999999999887655544 344444445555566 4789999999 3345
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC------HHHHHHHHHH
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVT--FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS------TEDATAFAER 147 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~ 147 (217)
......+++.+|++++|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+.++.+...
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 5555666788999999999875433 22222333322221 146899999999986543332 2356777788
Q ss_pred cCCcEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 027856 148 ENTFFMETSALES-----MNVENAFTEVLTQIYR 176 (217)
Q Consensus 148 ~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~ 176 (217)
.+..++.++...+ .++.++|..+.+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888888877643 5788888877765543
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.88 E-value=1.5e-21 Score=158.46 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=114.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEE----------------EEEEE---CCeEEEEEEEeC
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFAT----------------RSIRC---DDKIVKAQIWDT 69 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~---~~~~~~~~l~Dt 69 (217)
.....++|+++|++|+|||||+++|++........... .+... ..... ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 34567999999999999999999999864332110000 00000 00000 112368999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHHH
Q 027856 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAER 147 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~ 147 (217)
||++.+...+...+..+|++++|+|++++.+......++..+.... ..|+++|+||+|+.+..+. ..+++.++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998765555566666665442 3589999999999763221 11222333322
Q ss_pred c---CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 148 E---NTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 148 ~---~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
. +++++++||++|.|++++|+.|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 2 567999999999999999999986553
No 137
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=4.3e-21 Score=156.03 Aligned_cols=159 Identities=23% Similarity=0.197 Sum_probs=105.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC---CCCCcc--cceeEeEEEEEEE-------------C--C----eEEEEEE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF---SLESKS--TIGVEFATRSIRC-------------D--D----KIVKAQI 66 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l 66 (217)
...++|+++|+.++|||||+++|++... .....+ |....+....+.. . + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4569999999999999999999996532 223223 4433333333321 1 1 1368999
Q ss_pred EeCCChhhhhhhhhhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHH
Q 027856 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTR----HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTED 140 (217)
Q Consensus 67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~ 140 (217)
|||||++.|...+...+..+|++++|+|+++ +.+.+.+.. +... ...|+++++||+|+.+... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999998888788889999999999985 444443332 2222 1357999999999976443 23455
Q ss_pred HHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 141 ATAFAER---ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 141 ~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+.+++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6666654 3578999999999999999999886543
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=1.1e-21 Score=165.34 Aligned_cols=158 Identities=19% Similarity=0.235 Sum_probs=110.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCc--CC-----CCC------cccceeEeEEE--EEEE---CCeEEEEEEEeCCChh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNE--FS-----LES------KSTIGVEFATR--SIRC---DDKIVKAQIWDTAGQE 73 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~--~~-----~~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~~ 73 (217)
...+|+++|+.++|||||+++|+... +. ... ..+.+++.... .+.+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998732 11 001 01122233222 2222 5567899999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC---
Q 027856 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT--- 150 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 150 (217)
.|...+...+..+|++++|+|+++..+.+....|+.... .+.|+++|+||+|+...+ ..+...++....+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999989999999999999999999877777777766654 278999999999997632 22334455555565
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 151 FFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 151 ~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
.++++||++|.|++++|+++.+.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 4999999999999999999987654
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=4.7e-23 Score=168.92 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=101.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhhhhhc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE--------RYRAITSAYYR 84 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~ 84 (217)
.++|+++|.+|+|||||+|+|++..+... ..+.+.+..............+.+|||||.+ .+...+..++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999999876533 2455555555554454444689999999975 56677788899
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCH
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNV 163 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 163 (217)
.+|++++|+|+.++.+..+. .+...+.. .++|+++|+||+|+..... +..++. ..++ .++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~~---~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE-EVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH-HHHHHHTT---CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence 99999999999987665432 23333332 4789999999999865321 111222 3454 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 027856 164 ENAFTEVLTQIY 175 (217)
Q Consensus 164 ~~~~~~i~~~~~ 175 (217)
.++|+++.+.+.
T Consensus 153 ~~L~~~i~~~l~ 164 (436)
T 2hjg_A 153 GDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHhcC
Confidence 999999987764
No 140
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=1.8e-21 Score=163.74 Aligned_cols=159 Identities=21% Similarity=0.260 Sum_probs=114.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCc--CCC-----CCcc------cceeEeE--EEEEEE---CCeEEEEEEEeCCCh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FSL-----ESKS------TIGVEFA--TRSIRC---DDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~-----~~~~------~~~~~~~--~~~~~~---~~~~~~~~l~Dt~G~ 72 (217)
+...+|+++|+.++|||||+++|+... +.. .... ..+++.. ...+.+ ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999998631 110 0000 1111111 122222 456689999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC--
Q 027856 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-- 150 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 150 (217)
..|...+...+..+|++++|+|+++..+.+....|..... .+.|+++|+||+|+...+ ..+...++....+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999888889999999999999999887777777766554 378999999999997532 22334455555565
Q ss_pred -cEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 151 -FFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 151 -~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
.++++||++|.|++++|++|++.+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3999999999999999999987654
No 141
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=4.1e-21 Score=153.44 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhhhhhcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------ERYRAITSAYYRG 85 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~~ 85 (217)
.|+++|.+|+|||||+|+|++........+..+.+.....+.+++ ..+.+|||+|. +.+...+. .+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHh
Confidence 499999999999999999999876444334445556666777777 46799999995 22333333 4688
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHc---CCcEEEEecCC
Q 027856 86 AVGALLVYDVTRHV--TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAERE---NTFFMETSALE 159 (217)
Q Consensus 86 ~d~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~ 159 (217)
+|++++|+|++++. ..+....|...+......+.|+++|+||+|+...... ..+.+..++... +..++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 4555556666666554457899999999998653210 011222333444 23689999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~~~~ 177 (217)
+.|+++++++|.+.+...
T Consensus 338 g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccc
Confidence 999999999998876543
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=2.2e-22 Score=165.21 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=104.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh--------hhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT--------SAY 82 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 82 (217)
..++|+++|.+|+|||||+|+|++..... ...++.+.+.....+.+++ ..+.+|||||...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 35899999999999999999999976542 3334445555555666677 477999999976544332 335
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856 83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
+..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ....+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998776544 44555543 47999999999997644332 111111 346799999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 i~~~~~~i~~~~~ 175 (217)
++++|++|.+.+.
T Consensus 371 i~eL~~~i~~~~~ 383 (462)
T 3geh_A 371 IDSLETAILEIVQ 383 (462)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=2e-21 Score=148.94 Aligned_cols=162 Identities=13% Similarity=0.109 Sum_probs=105.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcC-CCCCccc-ceeEeEEEEEEECCeEEEEEEEeCCChhhhh-----------
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF-SLESKST-IGVEFATRSIRCDDKIVKAQIWDTAGQERYR----------- 76 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------- 76 (217)
....++|+|+|.+|+|||||+++|++... .....++ .+..........++ ..+.||||||...+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 44579999999999999999999999874 3333333 34444444555555 578999999965432
Q ss_pred hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEe-CCCCCCccCCCH-------HHHHHHHH
Q 027856 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS--NIVIMLVGN-KADLRHLRAVST-------EDATAFAE 146 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~ 146 (217)
.....+++.+|++++|+|+++..... ..++..+....+. ..|.++++| |+|+... .... .++..+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 22234678999999999998622211 1222333332221 356666666 9999742 1111 22344555
Q ss_pred HcCCc---E--EEEecCCCCCHHHHHHHHHHHHHH
Q 027856 147 RENTF---F--METSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 147 ~~~~~---~--~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
..+.. + +++||++|.|+.++|++|.+.+.+
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 55432 2 789999999999999999988765
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=7e-21 Score=156.15 Aligned_cols=161 Identities=22% Similarity=0.194 Sum_probs=109.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-----------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI----------- 78 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 78 (217)
+..++|+++|++|||||||+|+|++..... ...+..+.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 356999999999999999999999986532 22233344444556667775 6789999996433221
Q ss_pred -hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-H----HcCCcE
Q 027856 79 -TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-E----RENTFF 152 (217)
Q Consensus 79 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~~ 152 (217)
...++..+|++++|+|+++..+.++. .+...+.. .++|+++|+||+|+.+.+....++..... . ..++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 12356789999999999887665542 23333332 37999999999999765444444443222 2 235789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHH
Q 027856 153 METSALESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 153 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 177 (217)
+++||++|.|++++|+.+.+.+.+.
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999776554
No 145
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=4e-21 Score=156.32 Aligned_cols=160 Identities=23% Similarity=0.211 Sum_probs=111.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcC---CCCCcc--cceeEeEEEEEEE-------------C--C----eEEEEE
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF---SLESKS--TIGVEFATRSIRC-------------D--D----KIVKAQ 65 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 65 (217)
....++|+++|+.++|||||+++|++... ...... |....+....+.. . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 46789999999999999999999996532 223223 4333333333321 0 1 136899
Q ss_pred EEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHH
Q 027856 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTE 139 (217)
Q Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~ 139 (217)
||||||++.|.......+..+|++++|+|+++. .+.+.+.. +... ...|+++|+||+|+.+... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999988877788899999999999854 44443332 2222 1357999999999976332 1233
Q ss_pred HHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 140 DATAFAER---ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 140 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
++.+++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 44455443 3578999999999999999999886543
No 146
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.87 E-value=7.1e-22 Score=154.41 Aligned_cols=157 Identities=20% Similarity=0.163 Sum_probs=106.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChh-h--------hhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-R--------YRAITS 80 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~ 80 (217)
....+|+++|++|+|||||+|+|++..+.... .+..+.......+..++ ..+.+|||||.. . +.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 34568999999999999999999998764322 12122222222333343 588999999976 2 233345
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALE 159 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
.++..+|++++|+|+++ -+. ...++..... ..+.|+++++||+|+........+.+.++....+. .++++||++
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~--~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTP--DDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCH--HHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC-CCH--HHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 67789999999999977 322 2223322222 24789999999999865222222334455555665 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027856 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~i~~~~~~i~~~~ 174 (217)
|.|++++++.+.+.+
T Consensus 159 g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 159 GLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999988654
No 147
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=3.3e-21 Score=157.80 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=104.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC-------------------------------CCCcccceeEeEEEEEEE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS-------------------------------LESKSTIGVEFATRSIRC 57 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 57 (217)
+....++|+++|++++|||||+++|+...-. .......+.+..... +
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~--~ 90 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAY--F 90 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEE--E
Confidence 4456799999999999999999999654211 111122333333333 3
Q ss_pred CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCC
Q 027856 58 DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---FE---NVERWLKELRDHTDSNIV-IMLVGNKADL 130 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~D~ 130 (217)
......+.||||||++.|...+...+..+|++++|+|+++... ++ .....+..+.. .+.| +++|+||+|+
T Consensus 91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD 167 (439)
T ss_pred ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence 3344689999999999999999999999999999999988632 11 11112222222 2566 8999999998
Q ss_pred CCcc--C----CCHHHHHHHHHHcC------CcEEEEecCCCCCHHHHHH
Q 027856 131 RHLR--A----VSTEDATAFAEREN------TFFMETSALESMNVENAFT 168 (217)
Q Consensus 131 ~~~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 168 (217)
.... + ...+++..++...+ ++++++||++|.|+.++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 5321 1 11233344444443 4699999999999999766
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=4.9e-22 Score=153.53 Aligned_cols=160 Identities=17% Similarity=0.220 Sum_probs=93.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-C-------cccceeEeEEEEEEECCeEEEEEEEeCCChh-------hh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-S-------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-------RY 75 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~ 75 (217)
...++|+|+|.+|+|||||+|+|++...... + .+|.+.+.....+..++..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 4579999999999999999999888765433 2 4555556555555556666799999999952 22
Q ss_pred hhhh-------hhhhc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 76 RAIT-------SAYYR-------------GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 76 ~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
..+. ..++. .+|+++++++.+.......-..++..+.. ++|+++|+||+|+....+
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 2222 22222 37899999977653211111334444443 789999999999865322
Q ss_pred CC--HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 136 VS--TEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 136 ~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
.. .+.+.+.....++.++++|+.+++++.+++++|.+.+
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 21 1234445556788899999999999999998887543
No 149
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=3e-21 Score=146.86 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=105.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccc--ceeEeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKST--IGVEFATRSIRCDDKIVKAQIWDTAGQ--------ERYRAITS 80 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~ 80 (217)
...++|+++|.+|+|||||+|+|++.........+ .+..........++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 45799999999999999999999998876544333 22233334444455 57899999995 22322222
Q ss_pred hh----hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCC------CHHHHHHHHHH
Q 027856 81 AY----YRGAVGALLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAV------STEDATAFAER 147 (217)
Q Consensus 81 ~~----~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~ 147 (217)
.+ .+.+|++++|+|+++... .. ..++..+....+ .+.|+++++||.|+.+.... ..+.++.+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~-~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTA-QD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCH-HH-HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCH-HH-HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 33 389999999999975321 11 223333333322 26899999999999653210 11345667777
Q ss_pred cCCcEEEEecCC-----CCCHHHHHHHHHHHHHH
Q 027856 148 ENTFFMETSALE-----SMNVENAFTEVLTQIYR 176 (217)
Q Consensus 148 ~~~~~~~~Sa~~-----~~~i~~~~~~i~~~~~~ 176 (217)
.+..++.+++.. +.++.++++.|.+.+.+
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 787787777655 57899999988877765
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=2.1e-21 Score=161.00 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=100.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-----------------------------CcccceeEeEEEEEEECCeEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------------------------SKSTIGVEFATRSIRCDDKIV 62 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (217)
..++|+++|++++|||||+++|++...... .....+++.......++....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 469999999999999999999986521100 001113333333333444457
Q ss_pred EEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHH------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN------VERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 136 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 136 (217)
.+.||||||++.|...+..++..+|++++|+|++++.+... ....+..+... ...|+++|+||+|+.+.++.
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHH
Confidence 89999999999999999999999999999999998643221 11222222222 13569999999999764333
Q ss_pred CHHHHH----HHHHHc-----CCcEEEEecCCCCCHHHH
Q 027856 137 STEDAT----AFAERE-----NTFFMETSALESMNVENA 166 (217)
Q Consensus 137 ~~~~~~----~~~~~~-----~~~~~~~Sa~~~~~i~~~ 166 (217)
..++.. .+.... +++++++||++|.|+.++
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 333333 333332 456999999999999753
No 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=4.5e-21 Score=155.38 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=108.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCc-------CCCC-------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNE-------FSLE-------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA 77 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 77 (217)
..++|+++|++++|||||+++|++.. +... .....+.+.......+......+.||||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999999741 1000 001222333333344444446889999999999988
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccC---CCHHHHHHHHHHcC----
Q 027856 78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRA---VSTEDATAFAEREN---- 149 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 149 (217)
.+...+..+|++|+|+|+++....+..+.| ..+... ++| +++++||+|+.+..+ ...+++.+++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888889999999999999986544433333 333332 678 689999999974211 11234556666655
Q ss_pred -CcEEEEecCCCCC----------HHHHHHHHHHHH
Q 027856 150 -TFFMETSALESMN----------VENAFTEVLTQI 174 (217)
Q Consensus 150 -~~~~~~Sa~~~~~----------i~~~~~~i~~~~ 174 (217)
++++++||++|.| +.++|+.|.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5799999999765 667776665543
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=3.1e-23 Score=172.33 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=114.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++++|||||+++|.+..+.....++.+.+.....+...+ ...++||||||++.|...+..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 457899999999999999999998877655555555544444443322 2378999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHH---HHHc--CCcEEEEecCCCCCHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAF---AERE--NTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~ 165 (217)
|+|+++....+..+.|. .+. ..+.|+++++||+|+.+.+.. ...++... +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~l~-~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQ-HAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHHHH-HHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHHHH-HHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99999876554443332 222 247899999999999653211 11112111 1112 24699999999999999
Q ss_pred HHHHHHHHH
Q 027856 166 AFTEVLTQI 174 (217)
Q Consensus 166 ~~~~i~~~~ 174 (217)
+|+++...+
T Consensus 158 Lle~I~~l~ 166 (537)
T 3izy_P 158 LAEATIALA 166 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998655
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.5e-21 Score=140.36 Aligned_cols=116 Identities=19% Similarity=0.293 Sum_probs=87.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC---CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC-
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE---SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG- 85 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~- 85 (217)
....++|+++|++|+|||||+++|++..+... ..++.+.+ ...+.+.+|||||.+.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C---------CCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee---------ecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35678999999999999999999999876441 22222211 133578999999998887777777665
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCcc
Q 027856 86 ---AVGALLVYDVT-RHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLR 134 (217)
Q Consensus 86 ---~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~~~ 134 (217)
+|++++|+|++ +..++..+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 898998888877776543 23589999999999997643
No 154
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.85 E-value=1.7e-20 Score=148.95 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=100.8
Q ss_pred EEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhc-CCCCcE
Q 027856 53 RSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRDHT-DSNIVI 121 (217)
Q Consensus 53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ 121 (217)
..+.++ .+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|+
T Consensus 186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 334444 3789999999999999999999999999999999999 456887777887776532 257999
Q ss_pred EEEEeCCCCCCcc---------------CCCHHHHHHHHH-----------HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 122 MLVGNKADLRHLR---------------AVSTEDATAFAE-----------RENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 122 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
++++||.|+...+ .++.+++..++. ..++.++++||+++.|+.++|+++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985422 356788888876 34577999999999999999999999887
Q ss_pred HH
Q 027856 176 RV 177 (217)
Q Consensus 176 ~~ 177 (217)
+.
T Consensus 344 ~~ 345 (353)
T 1cip_A 344 KN 345 (353)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 155
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=1.3e-21 Score=161.22 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=103.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC--------hhhhhhhhhhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG--------QERYRAITSAYY 83 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~ 83 (217)
..++|+++|.+|||||||+|+|++..+.... .+.+.+.......+......+.+||||| ++.+...+..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 4679999999999999999999998765333 4556666666666665556899999999 777888888999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 027856 84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMN 162 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 162 (217)
..+|++++|+|..+..+..+ ..+...+.. .++|+++|+||+|+.+.. ....++. ..+ ..++++||.+|.|
T Consensus 101 ~~ad~il~VvD~~~~~~~~d-~~l~~~l~~---~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD-EEVAKILYR---TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH-HHHHHHHTT---CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCCChHH-HHHHHHHHH---cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccc
Confidence 99999999999887544332 223333332 489999999999986421 1111122 223 2478999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 i~~~~~~i~~~~~ 175 (217)
+.++++.+.+.+.
T Consensus 172 v~~L~~~i~~~l~ 184 (456)
T 4dcu_A 172 LGDLLDAVAEHFK 184 (456)
T ss_dssp HHHHHHHHHTTGG
T ss_pred hHHHHHHHHhhcc
Confidence 9999999987553
No 156
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=7.5e-22 Score=157.80 Aligned_cols=161 Identities=19% Similarity=0.292 Sum_probs=89.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CC--------cccceeEeEEEEEEECCeEEEEEEEeCCCh-------hhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQ-------ERY 75 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~ 75 (217)
..++|+|+|++|+|||||+++|++..... .+ .++.+.......+..++..+.+.+|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999988764332 22 134444444444445666779999999997 555
Q ss_pred hhhhh-------hhhcC-------------CcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856 76 RAITS-------AYYRG-------------AVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR 134 (217)
Q Consensus 76 ~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 134 (217)
..++. .++.. +|+++|+++.. ..++..+. .|+..+ ..++|+++|+||+|+...+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 55554 44433 23455555531 23333333 344433 2579999999999997654
Q ss_pred CCCH--HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 135 AVST--EDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
++.. +++.+++..++++++++||+++.+ ++.|.++.+.+.+..
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 4433 455666667789999999999999 888999888876543
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=154.84 Aligned_cols=158 Identities=22% Similarity=0.187 Sum_probs=106.0
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC---C---------Cccc-------------------ceeEeEEEEEEE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL---E---------SKST-------------------IGVEFATRSIRC 57 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~---~---------~~~~-------------------~~~~~~~~~~~~ 57 (217)
.....++|+++|++++|||||+++|++..... . ...+ .+++.......+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 34567999999999999999999998754110 0 0011 111121222223
Q ss_pred CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-
Q 027856 58 DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV- 136 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~- 136 (217)
......+.+|||||++.|...+..++..+|++++|+|++++...+. ..++..+... ...|+++|+||+|+.+..+.
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL--GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence 3334689999999999999888889999999999999998653332 2333333332 12368999999999752211
Q ss_pred ---CHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHHH
Q 027856 137 ---STEDATAFAEREN-----TFFMETSALESMNVENAFTE 169 (217)
Q Consensus 137 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~ 169 (217)
..++...++...+ .+++++||++|.|+.++|+.
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 1244555666666 67999999999999886443
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=6.6e-21 Score=152.61 Aligned_cols=147 Identities=10% Similarity=0.058 Sum_probs=105.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
+|+++|++++|||||+++|+ . ...+.+ .....+......+.+|||||+++|.......+..+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~--~giTi~--~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------K--KGTSSD--ITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------E--EEEESS--SEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------h--CCEEEE--eeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 1 111222 2223333334579999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCccCCC--HHHHHHHHHHc---CCcEEE--EecCC---CCC
Q 027856 95 VTRHVTFENVERWLKELRDHTDSNIVI-MLVGN-KADLRHLRAVS--TEDATAFAERE---NTFFME--TSALE---SMN 162 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~---~~~~~~--~Sa~~---~~~ 162 (217)
+... ......++..+... +.|. ++++| |+|+ +.+... .+++.+++... .+++++ +||++ +.|
T Consensus 93 -~~g~-~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQGL-DAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TTCC-CHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CCCC-cHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 5432 33334455555443 6676 88999 9998 432211 13444444443 367999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 027856 163 VENAFTEVLTQIYRV 177 (217)
Q Consensus 163 i~~~~~~i~~~~~~~ 177 (217)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887654
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=1.7e-20 Score=156.40 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=83.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcC------------------CC----CCcccceeEeEEEEEEECCeEEEEEEEe
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF------------------SL----ESKSTIGVEFATRSIRCDDKIVKAQIWD 68 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D 68 (217)
....+|+++|++|+|||||+++|+...- .. ......+.......+.+.+ +.++|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 3568999999999999999999972110 00 0001112222233344444 6899999
Q ss_pred CCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
|||+..+...+..++..+|++++|+|+++..+.+....|. .+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 9999999998999999999999999999877666554443 3333 3789999999999864
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=6.9e-21 Score=154.74 Aligned_cols=148 Identities=17% Similarity=0.137 Sum_probs=103.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC--------cCCCC--C-----cccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN--------EFSLE--S-----KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
...++|+++|++++|||||+++|++. .+... . ..+.+.+.......+......+.||||||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45799999999999999999999973 11110 0 012233333333444444468899999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccC---CCHHHHHHHHHHcC--
Q 027856 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRA---VSTEDATAFAEREN-- 149 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-- 149 (217)
...+...+..+|++++|+|+++....+. ..++..+... +.| +++++||+|+.+..+ ...+++.+++...+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 8888889999999999999988754333 4455555443 677 889999999974211 11234555666554
Q ss_pred ---CcEEEEecCCCCC
Q 027856 150 ---TFFMETSALESMN 162 (217)
Q Consensus 150 ---~~~~~~Sa~~~~~ 162 (217)
.+++++||++|.|
T Consensus 165 ~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 165 GDEVPVIRGSALLALE 180 (405)
T ss_dssp TTTSCEEECCHHHHHH
T ss_pred ccCCCEEEccHHHhhh
Confidence 5799999999977
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=1.4e-21 Score=159.97 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=103.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCCC-----------------------------cccceeEeEEEEEEECC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLES-----------------------------KSTIGVEFATRSIRCDD 59 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 59 (217)
...++|+++|++++|||||+++|+.. .+.... ....+.+.. ...++.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~--~~~~~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEEC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee--EEEEec
Confidence 35689999999999999999999875 222110 111222222 223333
Q ss_pred eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhh----cCCC-CcEEEEEeCCCCCCcc
Q 027856 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSN-IVIMLVGNKADLRHLR 134 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~----~~~~-~p~ivv~nK~D~~~~~ 134 (217)
....+.||||||++.|...+..++..+|++|+|+|+++ .+++.+..|....... ...+ .++++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 44689999999999999999999999999999999998 5565432221111111 1114 4689999999997621
Q ss_pred ------CCCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 027856 135 ------AVSTEDATAFAEREN-----TFFMETSALESMNVENAFT 168 (217)
Q Consensus 135 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 168 (217)
+...+++.+++...+ ++++++||++|.|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112344566666655 6799999999999986654
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=5e-20 Score=155.30 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=106.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC----cccceeEeEEEEE------------EECCeEEEEEEEeCCChhhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES----KSTIGVEFATRSI------------RCDDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~l~Dt~G~~~~ 75 (217)
..++|+++|++++|||||+++|++..+.... ..+.+..+..... .++.....++||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 3579999999999999999999987653322 1222222211100 00001125899999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC-------------H-
Q 027856 76 RAITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS-------------T- 138 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~- 138 (217)
...+...+..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+....... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9988888999999999999999 55554433 2222 378999999999996421100 0
Q ss_pred --H-------HHHHHHHHcC---------------CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 139 --E-------DATAFAEREN---------------TFFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 139 --~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
+ +........+ ++++++||++|.|+.+++++|...+..
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 1111112222 369999999999999999999987764
No 163
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=6.2e-20 Score=145.76 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=94.4
Q ss_pred eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 027856 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRDHT-DSNIVIMLVGNKA 128 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~ 128 (217)
..+.+.+|||+|++.++.+|..++++++++|+|||++ +..+++....|+..+.... ..+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7788888888888876542 2579999999999
Q ss_pred CCCCccC--C-------------------CHHHHHHHHHH----------------cCCcEEEEecCCCCCHHHHHHHHH
Q 027856 129 DLRHLRA--V-------------------STEDATAFAER----------------ENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 129 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
|+.+++. + +.+++..++.. ..+.++++||+++.|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1 14566666432 123468999999999999999999
Q ss_pred HHHHHHHh
Q 027856 172 TQIYRVVS 179 (217)
Q Consensus 172 ~~~~~~~~ 179 (217)
+.+.+...
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 164
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.83 E-value=7e-20 Score=143.55 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=99.0
Q ss_pred EEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-CCCCc
Q 027856 52 TRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRDHT-DSNIV 120 (217)
Q Consensus 52 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p 120 (217)
...+.+++ +.+.+|||+|++.++..|..++++++++|+|+|++ +..++.+...|+..+.... ..+.|
T Consensus 159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 33444444 78999999999999999999999999999999765 5566777666777665432 25799
Q ss_pred EEEEEeCCCCCCcc----------------CCCHHHHHHHHH----------HcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 121 IMLVGNKADLRHLR----------------AVSTEDATAFAE----------RENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 121 ~ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
+++++||+|+.+++ ..+.+++.+++. ..++.++++||+++.|++.+|..+.+.+
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 99999999996543 467788887753 3456789999999999999999999988
Q ss_pred HHH
Q 027856 175 YRV 177 (217)
Q Consensus 175 ~~~ 177 (217)
.+.
T Consensus 317 l~~ 319 (327)
T 3ohm_A 317 LQL 319 (327)
T ss_dssp HHT
T ss_pred HHH
Confidence 864
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=1.6e-20 Score=146.61 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=104.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc----cce----------------------eEe------------
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIG----------------------VEF------------ 50 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~----------------------~~~------------ 50 (217)
+....++|+|+|.+|+|||||+++|++..+.+.... ..+ .+.
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999887432110 011 000
Q ss_pred -----------EEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhhhhhcCCcEEE-EEEECCChhhHHHH
Q 027856 51 -----------ATRSIRCD-DKIVKAQIWDTAGQE-------------RYRAITSAYYRGAVGAL-LVYDVTRHVTFENV 104 (217)
Q Consensus 51 -----------~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~ 104 (217)
....+.+. .....+.||||||.. .+......++..++.++ +|+|+++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 00000000 012578999999952 45566777888888766 79999876544433
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH--cC-CcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 105 ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER--EN-TFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 105 ~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
..+...+.. .+.|+++|+||+|+.+......+.++..... .+ .+++++||++|.|++++|+.+.+..
T Consensus 182 ~~~~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 182 LKIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHhCC---CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 334444432 4789999999999976443223322211001 12 3578899999999999999998743
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.8e-20 Score=158.78 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=101.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-----------------------------ccceeEeEEEEEEECCeE
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-----------------------------STIGVEFATRSIRCDDKI 61 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|++|+|||||+++|++........ ...|++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999999764321110 011222222222233334
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---F---ENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 135 (217)
..+.||||||++.+...+...+..+|++|+|+|++++.. + ......+..+... ...|+++|+||+|+.+.+.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 689999999999999999999999999999999987521 0 0111112222221 1245999999999976332
Q ss_pred CCHH----HHHHHHHHc-----CCcEEEEecCCCCCHHHH
Q 027856 136 VSTE----DATAFAERE-----NTFFMETSALESMNVENA 166 (217)
Q Consensus 136 ~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 166 (217)
...+ ++..++... +++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2222 233344433 357999999999999876
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=6.1e-22 Score=163.30 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=106.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++++|||||+++|.+..+.....+..+.+.....+..++ ..++||||||++.|...+...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999998765544333333222222232333 478999999999999998888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc--CCCHH--HHHHHHHHcC--CcEEEEecCCCCCHHH
Q 027856 92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR--AVSTE--DATAFAEREN--TFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 165 (217)
|+|+++....+..+.| ..+.. .+.|+++++||+|+...+ .+..+ +...+...++ ++++++||++|.|+++
T Consensus 81 VVda~~g~~~qT~e~l-~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI-QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEETTTBSCTTTHHHH-HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EeecccCccHHHHHHH-HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 9999884322222222 22222 378999999999996421 11100 0000112222 6799999999999999
Q ss_pred HHHHHHH
Q 027856 166 AFTEVLT 172 (217)
Q Consensus 166 ~~~~i~~ 172 (217)
+|+++..
T Consensus 157 Lle~I~~ 163 (501)
T 1zo1_I 157 LLDAILL 163 (501)
T ss_dssp HHHHTTT
T ss_pred hhhhhhh
Confidence 9999874
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=9.7e-21 Score=156.21 Aligned_cols=155 Identities=20% Similarity=0.186 Sum_probs=90.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC--cCCC-----------------------------CCcccceeEeEEEEEEECC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFSL-----------------------------ESKSTIGVEFATRSIRCDD 59 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 59 (217)
...++|+++|+.++|||||+++|+.. .+.. ......+++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999752 1110 0001112222222333333
Q ss_pred eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCcc-
Q 027856 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLR- 134 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~- 134 (217)
..+.||||||++.|...+...+..+|++|+|+|+++.. +|+....+.+.+......++| +++++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 68899999999999988888899999999999999863 222111222222211123676 99999999995421
Q ss_pred -----CCCHHHHHHHHHHc-------CCcEEEEecCCCCCHHHHH
Q 027856 135 -----AVSTEDATAFAERE-------NTFFMETSALESMNVENAF 167 (217)
Q Consensus 135 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~ 167 (217)
....+++..++... +++++++||++|.|+.++|
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123455555555 3559999999999998866
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=2.9e-19 Score=132.47 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=100.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh----------hhhhhh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE----------RYRAIT 79 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 79 (217)
.....+|+++|++|+|||||+++|++..+.....++.+.......+.+++ .+.+|||||.. .+....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999998875444445555554444444433 56799999963 233333
Q ss_pred hhhh---cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHcC--CcE
Q 027856 80 SAYY---RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAEREN--TFF 152 (217)
Q Consensus 80 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~ 152 (217)
..++ ..++++++++|++++.+.... .....+.. .+.|++++.||+|+....+ ...+.+..++...+ +.+
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 3344 578999999999886554321 12222222 3788999999999865321 11234445555443 458
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 027856 153 METSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 153 ~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+++||+++.++++++++|.+.+.
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHC
T ss_pred EEEeecCCCCHHHHHHHHHHHHh
Confidence 89999999999999999987654
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=9.8e-20 Score=160.59 Aligned_cols=161 Identities=17% Similarity=0.114 Sum_probs=107.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCcC-------CC-------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEF-------SL-------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
.....++|+++|++++|||||+++|++... .. ....+.|++.....+.++.....+.||||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 345679999999999999999999987410 00 0112333333333344444446899999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHcC-
Q 027856 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAEREN- 149 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~- 149 (217)
|.......+..+|++|+|+|+++....+. ..++..+... ++| +++++||+|+.+..+. ..+++.+++...+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 99888889999999999999988643332 2333444433 677 7899999999752211 1234556666654
Q ss_pred ----CcEEEEecCCC--------CCHHHHHHHHHHH
Q 027856 150 ----TFFMETSALES--------MNVENAFTEVLTQ 173 (217)
Q Consensus 150 ----~~~~~~Sa~~~--------~~i~~~~~~i~~~ 173 (217)
++++++||++| .|+.++|+.|.+.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 57999999999 3466666666543
No 171
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.80 E-value=2.7e-19 Score=140.72 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=94.4
Q ss_pred EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027856 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRDHT-DSNIVIMLVGNKAD 129 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D 129 (217)
.+.+.+|||+|++.++..|..++++++++|+|+|++ +..++.+...|+..+.... ..+.|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 478999999999999999999999999999999998 6677887777777765432 35799999999999
Q ss_pred CCCcc---------------CCCHHHHHHHHHH---------------------------cCCcEEEEecCCCCCHHHHH
Q 027856 130 LRHLR---------------AVSTEDATAFAER---------------------------ENTFFMETSALESMNVENAF 167 (217)
Q Consensus 130 ~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~~i~~~~ 167 (217)
+.+++ ....+++.+++.. ..+.++++||++..|++.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 85421 1246666555433 13668999999999999999
Q ss_pred HHHHHHHHH
Q 027856 168 TEVLTQIYR 176 (217)
Q Consensus 168 ~~i~~~~~~ 176 (217)
..+.+.+++
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999988
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.80 E-value=6e-20 Score=151.14 Aligned_cols=150 Identities=15% Similarity=0.136 Sum_probs=101.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCc--CCCC------------------C-----------cccceeEeEEEEEEECC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FSLE------------------S-----------KSTIGVEFATRSIRCDD 59 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~~------------------~-----------~~~~~~~~~~~~~~~~~ 59 (217)
...++|+++|++++|||||+++|++.. +... + ....+.+.... .++.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEec
Confidence 457999999999999999999998741 1110 0 01122222222 2333
Q ss_pred eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh---H----HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 027856 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---F----ENVERWLKELRDHTDSNIV-IMLVGNKADLR 131 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~----~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~ 131 (217)
....+.||||||++.|...+...+..+|++|+|+|+++... | +..+ .+..+.. .+.| +++|+||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH---TTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH---cCCCeEEEEEEccccc
Confidence 34689999999999999999899999999999999987632 2 2222 2222222 2555 89999999997
Q ss_pred CccC----CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHH
Q 027856 132 HLRA----VSTEDATAFAEREN-----TFFMETSALESMNVENA 166 (217)
Q Consensus 132 ~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 166 (217)
+... ...+++..++...+ ++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 3211 11234455555554 67999999999998754
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=1.3e-18 Score=133.41 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=86.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhh------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYY------ 83 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~------ 83 (217)
...++|+++|.+|+|||||+++|++...... ..+..+.......+..++ ..+.+|||||+..+......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 3579999999999999999999999876332 222233334444455555 4899999999866544433333
Q ss_pred ---cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCccCCCHH
Q 027856 84 ---RGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSN--IVIMLVGNKADLRHLRAVSTE 139 (217)
Q Consensus 84 ---~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~~~~~~~ 139 (217)
..+|++++|++++... +... ..|+..+....+.+ .|+++|+||+|+...+....+
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 2789999999987654 3222 45677776655433 489999999999654444443
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=1.6e-18 Score=148.96 Aligned_cols=164 Identities=13% Similarity=0.198 Sum_probs=109.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-ccccee-EeE------EEEEEE--------------------------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGV-EFA------TRSIRC-------------------------- 57 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~-~~~------~~~~~~-------------------------- 57 (217)
..++|+|+|.+|+|||||+|+|++..+.+.. .+++.. ... ..+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4689999999999999999999998765432 222210 000 001111
Q ss_pred --------------------CCeE--EEEEEEeCCChhh---hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 027856 58 --------------------DDKI--VKAQIWDTAGQER---YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR 112 (217)
Q Consensus 58 --------------------~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~ 112 (217)
.... ..+.||||||... .......++..+|++++|+|++++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0000 2589999999654 33456678899999999999998887776665655543
Q ss_pred hhcCCCCcEEEEEeCCCCCCccCCCHH---H-------HHHH----HH-H--------cCCcEEEEecC-----------
Q 027856 113 DHTDSNIVIMLVGNKADLRHLRAVSTE---D-------ATAF----AE-R--------ENTFFMETSAL----------- 158 (217)
Q Consensus 113 ~~~~~~~p~ivv~nK~D~~~~~~~~~~---~-------~~~~----~~-~--------~~~~~~~~Sa~----------- 158 (217)
. .+.|+++|+||+|+.....++.+ + .... .. . ....++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 3 26789999999999654311111 1 1111 11 1 12359999999
Q ss_pred ---CCCCHHHHHHHHHHHHHHHH
Q 027856 159 ---ESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 159 ---~~~~i~~~~~~i~~~~~~~~ 178 (217)
++.|+.++++.+.+.+.+.+
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999988775543
No 175
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=1.5e-19 Score=144.83 Aligned_cols=161 Identities=12% Similarity=0.109 Sum_probs=107.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEE--------------------------------------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR-------------------------------------- 53 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 53 (217)
..++|+|+|.+|||||||+++|++..+.+....+.+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999877443322221110000
Q ss_pred --------------EEEE-CCeEEEEEEEeCCChhhh-------------hhhhhhhhcCCcEEEEEEECCChhhHHHHH
Q 027856 54 --------------SIRC-DDKIVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDVTRHVTFENVE 105 (217)
Q Consensus 54 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 105 (217)
.+.+ ......+.+|||||...+ ..+...++.++|++|+|+|..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 1110 011136899999996554 566778899999999999875433221 3
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 106 RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 106 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
.|+..+......+.|+++|+||+|+.+......+.+.......+..|+.+++.++.++++.++.+....
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 345555555555789999999999987555444444444445677899999999988887766654433
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=1.7e-18 Score=148.34 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=82.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC------------------cccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES------------------KSTIGVEFATRSIRCDDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.....+|+++|+.|+|||||+++|++....... ....+.......+... .+.+++|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence 455789999999999999999999954322100 0011222222233333 47899999999
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
+..+......++..+|++++|+|+.+...... ..++..+.. .+.|+++++||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 99998888899999999999999887654433 344444443 278999999999986
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=2.2e-18 Score=139.40 Aligned_cols=160 Identities=17% Similarity=0.126 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----hhhhhhh---hhcCC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----YRAITSA---YYRGA 86 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~ 86 (217)
-.|+++|++|||||||+++|++........+..+.......+.+++ ...+.+||+||... +..+... .+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3479999999999999999998753222222223333344454443 24789999999632 1112222 24579
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
+.+++++|++ ...+..+..+..++..+.. ...|.++++||+|+... ...+++.+.....+..++.+||+++.|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999997 5556667667666655421 25789999999998753 22344445555567889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027856 165 NAFTEVLTQIYRV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
+++++|.+.+.+.
T Consensus 314 eL~~~i~~~l~~~ 326 (416)
T 1udx_A 314 ALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888654
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.77 E-value=1.7e-18 Score=136.14 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=97.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc----ccc---eeEeE--------------------------------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK----STI---GVEFA-------------------------------- 51 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~---~~~~~-------------------------------- 51 (217)
...++|+|+|.+|+|||||+|+|++..+.+... ... .....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 456899999999999999999999988633221 011 00000
Q ss_pred ------------------EEEEE-ECCeEEEEEEEeCCChhh-------------hhhhhhhhhcCCcEEEEEEECCChh
Q 027856 52 ------------------TRSIR-CDDKIVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDVTRHV 99 (217)
Q Consensus 52 ------------------~~~~~-~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 99 (217)
...+. .......+.||||||... +......++..+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00000 011124789999999642 4566677889999999999974322
Q ss_pred -hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC------CCCHHHHHHHHHH
Q 027856 100 -TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE------SMNVENAFTEVLT 172 (217)
Q Consensus 100 -s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~i~~ 172 (217)
+......+...+. ..+.|+++|+||+|+........+.+.......+..++++++.. +.|+.++++.+.+
T Consensus 182 ~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 182 LANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp STTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 1111112333332 24789999999999976443223322211111225577776554 6788888888776
Q ss_pred HHH
Q 027856 173 QIY 175 (217)
Q Consensus 173 ~~~ 175 (217)
.+.
T Consensus 259 ~~~ 261 (315)
T 1jwy_B 259 YFK 261 (315)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=1.6e-18 Score=133.56 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=82.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh-------hh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS-------AY 82 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~ 82 (217)
...++|+++|.+|+|||||+|+|++..+.... .+..+.......+...+ ..+.+|||||...+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999998764322 12222222223333333 6899999999755432211 11
Q ss_pred --hcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCccCCCHH
Q 027856 83 --YRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSN--IVIMLVGNKADLRHLRAVSTE 139 (217)
Q Consensus 83 --~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~~~~~~~ 139 (217)
...+|++++|+|++... +... ..|+..+....+.+ .|+++|+||+|+...+....+
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~ 175 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD 175 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence 34789999999986532 3222 35777776554333 699999999999765443443
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.76 E-value=6.5e-20 Score=154.94 Aligned_cols=148 Identities=24% Similarity=0.209 Sum_probs=82.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-----------------------------cccceeEeEEEEEEECCe
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------------------KSTIGVEFATRSIRCDDK 60 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 60 (217)
....++|+++|++++|||||+++|++....... ....|++.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 345789999999999999999999753110000 001222333333333334
Q ss_pred EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCC
Q 027856 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKELRDHTDSNIV-IMLVGNKAD 129 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D 129 (217)
...+.||||||++.|...+...+..+|++|+|+|++++ .+.+. +..+... ++| +++|+||+|
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~----l~~~~~l---gip~iIvviNKiD 326 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH----AYLLRAL---GISEIVVSVNKLD 326 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH----HHHHHHS---SCCCEEEEEECGG
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH----HHHHHHc---CCCeEEEEEeccc
Confidence 46899999999999988888889999999999999853 23222 2222222 555 899999999
Q ss_pred CCCccCCC----HHHHHHHH-HHcCC-----cEEEEecCCCCCHH
Q 027856 130 LRHLRAVS----TEDATAFA-ERENT-----FFMETSALESMNVE 164 (217)
Q Consensus 130 ~~~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 164 (217)
+.+..... ..++..+. ...++ +++++||++|.|+.
T Consensus 327 l~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 327 LMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 96522111 12333334 33344 69999999999997
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=1.2e-17 Score=143.63 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=85.0
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCc--C------CCC--C--------cccceeEeEEEEEEECCeEEEEEEEeC
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNE--F------SLE--S--------KSTIGVEFATRSIRCDDKIVKAQIWDT 69 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~--~------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt 69 (217)
.+.....+|+|+|++|+|||||+++|+... + ... . ....+.......+.+.+ +.++||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDT 84 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDT 84 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEEC
Confidence 345678999999999999999999998421 1 000 0 11112222223333343 68999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
||+..+...+..++..+|++++|+|+++..+.+....|... .. .+.|+++|+||+|+..
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH---TTCCEEEEEECTTSTT
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH---cCCCEEEEEECCCccc
Confidence 99999888889999999999999999998777766555543 33 2789999999999864
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.75 E-value=1.1e-17 Score=139.59 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=79.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC--------------------CcccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE--------------------SKSTIGVEFATRSIRCDDKIVKAQIWDTA 70 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 70 (217)
...++|+++|++|+|||||+++|+...-... ...+.+++.......+....+.+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 3568999999999999999999997421100 00111222211122222233689999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
|+..|......++..+|++++|+|+++...... ..++..+.. .++|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~---~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL---RDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT---TTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH---cCCCEEEEEcCcCCcc
Confidence 999988888889999999999999988643222 233333332 3789999999999864
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=4.1e-19 Score=138.69 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=85.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC-cCCCCC--------cccceeEeEEEEEEECCeEEEEEEEeCCCh-------h
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN-EFSLES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQ-------E 73 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~ 73 (217)
....++|+|+|++|+|||||+++|++. .++..+ .++.............+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345789999999999999999999876 433322 112211111122222444568999999997 4
Q ss_pred hhhhhhh-------hhhc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856 74 RYRAITS-------AYYR-------------GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 74 ~~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 133 (217)
.+..+.. .++. .+++++++.+.+.. +++.+. ...+.... ...++++|+||.|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 4444333 3332 23446666654321 122222 12222222 36799999999999764
Q ss_pred cCC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 134 RAV--STEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
+++ ..+++.+++..+++.++++||+++ |++++|..+.+.+.+
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 332 235677788888999999999999 999999999988753
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=1.7e-18 Score=139.74 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEE--EE-------------------ECC-eEEEEEEEeCCC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS--IR-------------------CDD-KIVKAQIWDTAG 71 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~l~Dt~G 71 (217)
++|+++|.+|+|||||+|+|++........+..+.+..... +. +++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999998732222222222222221 11 122 247899999999
Q ss_pred hhhh----hhhhh---hhhcCCcEEEEEEECCCh
Q 027856 72 QERY----RAITS---AYYRGAVGALLVYDVTRH 98 (217)
Q Consensus 72 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~ 98 (217)
.... ..+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 22222 456899999999999875
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=1.4e-16 Score=137.09 Aligned_cols=121 Identities=16% Similarity=0.111 Sum_probs=85.0
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCc--CCCC--------C--------cccceeEeEEEEEEEC-----CeEEEE
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNE--FSLE--------S--------KSTIGVEFATRSIRCD-----DKIVKA 64 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~~--------~--------~~~~~~~~~~~~~~~~-----~~~~~~ 64 (217)
.+.....+|+|+|+.|+|||||+++|+... +... . ....+.......+.+. +..+.+
T Consensus 5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence 345667999999999999999999997531 1110 0 0111222222223322 234799
Q ss_pred EEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 65 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
+||||||+..|...+...++.+|++|+|+|+++....+....|.. +.. .+.|+++|+||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCccc
Confidence 999999999998888889999999999999998766555444433 322 3789999999999854
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=7e-17 Score=138.85 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=84.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCC---C-------------cccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLE---S-------------KSTIGVEFATRSIRCDDKIVKAQIWDTA 70 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 70 (217)
+.....+|+++|++|+|||||+++|+.. .+... . ....+.......+.+.+ +.++|||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence 4566799999999999999999999952 21100 0 01111122222333444 689999999
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
|+..+...+..+++.+|++++|+|+++..+......|.. +.. .+.|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999888888889999999999999998877666555543 333 2789999999999864
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=5e-18 Score=137.44 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=81.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC--------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-----
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR----- 76 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----- 76 (217)
....++|+|+|++|+|||||+++|++..+.... .++.+.......+...+....+++||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 445788999999999999999999998763221 1222222111122223434578999999964321
Q ss_pred --h------------------hhhhhhcCCcEEEEEEECCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856 77 --A------------------ITSAYYRGAVGALLVYDVTRH-VTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR 134 (217)
Q Consensus 77 --~------------------~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 134 (217)
. +...++..+++.+++|..... .++.... .|+..+. .+.|+|+|+||+|+...+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 1 112334455543344333322 2233332 4666554 378999999999997654
Q ss_pred CCCH--HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856 135 AVST--EDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
++.. +++.+.+..+++.++++|+.++.++.++|..+...
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 4433 55667777889999999999999999877766643
No 188
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.73 E-value=2.1e-17 Score=131.67 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=94.4
Q ss_pred EEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCCcE
Q 027856 53 RSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRDH-TDSNIVI 121 (217)
Q Consensus 53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~p~ 121 (217)
..+.+++ +.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...+.|+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 3444454 789999999999999999999999999999999999 67888888888877654 2357999
Q ss_pred EEEEeCCCCCCcc----------------CCCHHHHHHHHH-----------HcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856 122 MLVGNKADLRHLR----------------AVSTEDATAFAE-----------RENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 122 ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 174 (217)
++++||.|+.+++ ..+.+++..++. ..++.++++||+++.|+.++|+++.+.+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 9999999996432 266777777662 2356799999999999999999999988
Q ss_pred HHHHh
Q 027856 175 YRVVS 179 (217)
Q Consensus 175 ~~~~~ 179 (217)
.+...
T Consensus 352 ~~~~l 356 (362)
T 1zcb_A 352 LHDNL 356 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.72 E-value=2.8e-18 Score=133.99 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=109.0
Q ss_pred HHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHH
Q 027856 28 NLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVE 105 (217)
Q Consensus 28 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~ 105 (217)
+|+.+++.+.|. ..+.+|.+..+. ..+..++ .+.+||+ ++++..++..+++++|++|+|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688889988888 788899985443 3322222 7899999 8899999999999999999999999987 788888
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHHH
Q 027856 106 RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 106 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
.|+..+.. .++|+++|+||+|+.+.+.+ +++.+++..++ ..++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99988765 37999999999999764322 45666777666 88999999999999999987753
No 190
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.71 E-value=8.6e-17 Score=129.22 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=100.4
Q ss_pred EEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCCcE
Q 027856 53 RSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRDH-TDSNIVI 121 (217)
Q Consensus 53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~p~ 121 (217)
..+.+++ +.+.+|||+|++.++..|..++++++++|+|||+++ ..+++.+..|+..+... ...+.|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3444554 799999999999999999999999999999999999 88899999999888764 2367999
Q ss_pred EEEEeCCCCCCccC---C---------------------------CHHHHHHHH-----HH--------cCCcEEEEecC
Q 027856 122 MLVGNKADLRHLRA---V---------------------------STEDATAFA-----ER--------ENTFFMETSAL 158 (217)
Q Consensus 122 ivv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~ 158 (217)
++|+||+|+...+. + ..+++..++ .. ..+.++++||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999854321 1 135555553 22 24568899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 027856 159 ESMNVENAFTEVLTQIYRVVSR 180 (217)
Q Consensus 159 ~~~~i~~~~~~i~~~~~~~~~~ 180 (217)
++.|++++|..+.+.+.+...+
T Consensus 368 d~~nV~~vF~~v~~~I~~~~l~ 389 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMHLR 389 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888766543
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.69 E-value=8.6e-18 Score=134.16 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=95.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccc----cee----------------------E---------------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKST----IGV----------------------E--------------- 49 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~~----------------------~--------------- 49 (217)
...++|+|+|.+|+|||||+++|++..+.+..... .+. +
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999998875322111 110 0
Q ss_pred --------eEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhhhhhcCCc-EEEEEEECCChhhHHHHHH
Q 027856 50 --------FATRSIRCD-DKIVKAQIWDTAGQE-------------RYRAITSAYYRGAV-GALLVYDVTRHVTFENVER 106 (217)
Q Consensus 50 --------~~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~ 106 (217)
.....+.+. .....+.||||||.. .+..+...++...+ ++++|++++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 000011111 112578999999942 34556666776555 5555667655332222222
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH--HHHcC-CcEEEEecCCCCCHHHHHHHHHH
Q 027856 107 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF--AEREN-TFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 107 ~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
+... ....+.|+++|+||+|+.+........+... ....+ ..++++||+++.|+.++++.+.+
T Consensus 189 i~~~---~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKE---VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH---HCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHH---hCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333 3335789999999999976433222211100 00122 24778999999999999999876
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=7.8e-16 Score=122.10 Aligned_cols=146 Identities=17% Similarity=0.133 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhhhh--
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQERYR-- 76 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~-- 76 (217)
++|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ...+.+|||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999997743332232233333334444442 1478999999976543
Q ss_pred --hh---hhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHH------------------------------
Q 027856 77 --AI---TSAYYRGAVGALLVYDVTRH----------VTFENVERWLKEL------------------------------ 111 (217)
Q Consensus 77 --~~---~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l------------------------------ 111 (217)
.+ ....++.+|++++|+|+++. ..++++..+..++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 23357899999999999862 1222222111111
Q ss_pred ----------Hh-------------------h-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856 112 ----------RD-------------------H-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 112 ----------~~-------------------~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
.. + ....+|+++++|+.|..-......+.+.+++...+..++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 10 0 112589999999998642112235667777888889999999763
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=6.5e-17 Score=120.72 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=96.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeE--------------eEEEEEEE----------------CCeE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE--------------FATRSIRC----------------DDKI 61 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 61 (217)
...+|+++|.+|+|||||+++|++.............+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35789999999999999999998763221100000000 00011111 0122
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 141 (217)
..+.+|||+|..... ..+....+.+++|+|+.+.... ...+... . +.|+++|+||+|+........++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 578899999941110 0111356889999998765321 1111111 1 468899999999865333456666
Q ss_pred HHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856 142 TAFAERE--NTFFMETSALESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 142 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 178 (217)
.+.+... +.+++++||++|.|+.++|+++.+.+....
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 6666554 467999999999999999999998775543
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.65 E-value=3.4e-15 Score=125.13 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=82.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCc------------------C----CCCCcccceeEeEEEEEEECCeEEEEEEEeC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNE------------------F----SLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 69 (217)
..-+|+|+|+.++|||||..+|+... + ..+....+++.-....+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 46899999999999999999997311 0 011111222333334444455 78999999
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
||+..|..-....++-+|++++|+|+...-..+....|.... .+ ++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT---TCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh---CCceEEEEecccchh
Confidence 999999998999999999999999999876655544554443 33 899999999999743
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=2.4e-16 Score=125.88 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=69.5
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC--HH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS--TE 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~ 139 (217)
+.+.||||||.. ......+..+|++++|+|.........+.. .. ...|+++|+||+|+....... ..
T Consensus 172 ~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------~~--~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKK------GV--LELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCT------TS--GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHH------hH--hhcCCEEEEECCCCcChhHHHHHHH
Confidence 588999999932 223344588999999999876544322110 01 246889999999986422111 11
Q ss_pred HHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 140 DATAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 140 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
+....... ++.+++++||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 12222111 25779999999999999999999988765
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.64 E-value=5.4e-18 Score=127.05 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=92.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeE------------EEEEEEC-CeE-----------------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA------------TRSIRCD-DKI----------------- 61 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 61 (217)
..++|+++|.+|||||||+++|+...+...+..+.+.++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987655433334333322 1111111 111
Q ss_pred --EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH
Q 027856 62 --VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE 139 (217)
Q Consensus 62 --~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 139 (217)
..+.++|++|.-... ..+-...+.++.++|......... ..... . ..|.++|+||+|+........+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence 134555555521000 011122344556666432211100 00111 1 4678999999999764445677
Q ss_pred HHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 140 DATAFAERE--NTFFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 140 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
+...++... +++++++||++|.|++++|+++.+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 777776654 5789999999999999999999887653
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=1.3e-15 Score=133.57 Aligned_cols=118 Identities=21% Similarity=0.199 Sum_probs=87.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----------------CCc--ccceeEeEEEEEE------------ECC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----------------ESK--STIGVEFATRSIR------------CDD 59 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----------------~~~--~~~~~~~~~~~~~------------~~~ 59 (217)
.....+|+|+|+.|+|||||+++|+...-.. ... .|.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3457899999999999999999998742100 001 1222222222222 234
Q ss_pred eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
..+.++||||||+..|...+..+++.+|++|+|+|++++.+++....|..... .+.|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 47899999999999999999999999999999999999888777665654443 378999999999986
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=5.9e-16 Score=129.81 Aligned_cols=120 Identities=19% Similarity=0.247 Sum_probs=82.6
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC---CCCcccceeEeEEEEEEECCe------------------------
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS---LESKSTIGVEFATRSIRCDDK------------------------ 60 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~------------------------ 60 (217)
.+....++|+|+|.+|+|||||+|+|++..+. ....++.+ .... +.....
T Consensus 60 ~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~~-i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g 136 (550)
T 2qpt_A 60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFVA-VMHGETEGTVPGNALVVDPEKPFRKLNPFG 136 (550)
T ss_dssp TTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEEE-EECCSSSEEECCC-----------------
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEEE-EEECCcccccCCceeeecCcccHHHHhhhc
Confidence 34556799999999999999999999998864 22222221 1100 000000
Q ss_pred -------E---------EEEEEEeCCChhh-----------hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHh
Q 027856 61 -------I---------VKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD 113 (217)
Q Consensus 61 -------~---------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~ 113 (217)
. ..+.||||||... +...+..++..+|++++|+|+++....+....++..+..
T Consensus 137 ~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~ 216 (550)
T 2qpt_A 137 NTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG 216 (550)
T ss_dssp -CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT
T ss_pred ccccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh
Confidence 0 2589999999654 445667788899999999999875444444556655543
Q ss_pred hcCCCCcEEEEEeCCCCCCc
Q 027856 114 HTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 114 ~~~~~~p~ivv~nK~D~~~~ 133 (217)
.+.|+++|+||+|+...
T Consensus 217 ---~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 217 ---HEDKIRVVLNKADMVET 233 (550)
T ss_dssp ---CGGGEEEEEECGGGSCH
T ss_pred ---cCCCEEEEEECCCccCH
Confidence 36899999999998753
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.60 E-value=2.9e-15 Score=119.45 Aligned_cols=155 Identities=18% Similarity=0.103 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECC-------------------eEEEEEEEeCCChhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-------------------KIVKAQIWDTAGQER 74 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~ 74 (217)
++|+++|.+|+|||||+++|++........+..+.........+.+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6799999999999999999998753222112112222222223321 235799999999754
Q ss_pred hh-------hhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHH---------------------------
Q 027856 75 YR-------AITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKE--------------------------- 110 (217)
Q Consensus 75 ~~-------~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~--------------------------- 110 (217)
.. ......++.+|++++|+|+++. ....++..+..+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 2223457899999999999851 111111111110
Q ss_pred ------------HHhh--------------------cCCCCcEEEEEeCCCCC--Cc-cCCCHHHHHHHHHHcCCcEEEE
Q 027856 111 ------------LRDH--------------------TDSNIVIMLVGNKADLR--HL-RAVSTEDATAFAERENTFFMET 155 (217)
Q Consensus 111 ------------l~~~--------------------~~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
+... .-..+|+++++||.|.. +. +....+.+..++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 1000 01247999999999742 21 1233566777888888999999
Q ss_pred ecCCCCCHHHHHH
Q 027856 156 SALESMNVENAFT 168 (217)
Q Consensus 156 Sa~~~~~i~~~~~ 168 (217)
||+...++.++++
T Consensus 242 SAk~E~el~eL~~ 254 (368)
T 2dby_A 242 SARLEAELAELSG 254 (368)
T ss_dssp CHHHHHHHHTSCH
T ss_pred echhHHHHHHhch
Confidence 9988665554443
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=114.81 Aligned_cols=103 Identities=9% Similarity=0.019 Sum_probs=62.9
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 141 (217)
+.+.++||+|... ........+|++++|+|++.+...+.+.. .+ ...|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 5789999999531 12345678999999999987643222111 11 14578999999998642110 0011
Q ss_pred HHHHH----------HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 142 TAFAE----------RENTFFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 142 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
..+.. .+..+++.+||++|.|+++++++|.+.+.+
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 12211 124568999999999999999999987654
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.3e-14 Score=111.41 Aligned_cols=152 Identities=19% Similarity=0.124 Sum_probs=99.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhhhhhc
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY-------RAITSAYYR 84 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~ 84 (217)
...+|+++|.||+|||||+|+|++........+..+.+.....+.+.+ ..++++||||.... .......++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 457999999999999999999999876555556777777788888888 57899999994321 122234567
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--------ccCCCHHHHHHHHHHcCCcEEE
Q 027856 85 GAVGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRH--------LRAVSTEDATAFAERENTFFME 154 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~ 154 (217)
.+|++++|+|++++.. ..+....++.... -...|.++++||.|... ......++.........+.--+
T Consensus 149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred hcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 8999999999998743 2233333333221 13567789999999732 1234556666665554433222
Q ss_pred EecCCCCCHHHHH
Q 027856 155 TSALESMNVENAF 167 (217)
Q Consensus 155 ~Sa~~~~~i~~~~ 167 (217)
+.-..+...+++.
T Consensus 227 v~~~~nv~eddl~ 239 (376)
T 4a9a_A 227 IAFRCDATVDDLI 239 (376)
T ss_dssp EEECSCCCHHHHH
T ss_pred eeecccCCHHHHH
Confidence 2223333444443
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.57 E-value=3.8e-14 Score=108.38 Aligned_cols=111 Identities=14% Similarity=-0.059 Sum_probs=68.0
Q ss_pred EEEEEEeCCChhhhhhhhh------hhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856 62 VKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHLR 134 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 134 (217)
+.+.||||||......... ..+.. +++++++|+....+...... +..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999766543221 23455 88999998764332222211 1111111111268999999999986532
Q ss_pred CCCHHHHHHH----------------------------HHHcC--CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 135 AVSTEDATAF----------------------------AEREN--TFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 135 ~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
.. +++.++ +...+ .+++++||+++.|+++++++|.+.+.
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 11 111111 23333 47999999999999999999987664
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.55 E-value=1.3e-14 Score=124.53 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=98.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccccee------------------------------------------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV------------------------------------------ 48 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~------------------------------------------ 48 (217)
...++|+|+|.+++|||||+|+|++..+.+......+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45689999999999999999999998763322111110
Q ss_pred -------EeEEEE--EEECCeEEEEEEEeCCChh-------------hhhhhhhhhh-cCCcEEEEEEECCChhhHHHHH
Q 027856 49 -------EFATRS--IRCDDKIVKAQIWDTAGQE-------------RYRAITSAYY-RGAVGALLVYDVTRHVTFENVE 105 (217)
Q Consensus 49 -------~~~~~~--~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~ 105 (217)
...... +...+. ..+.|+||||.. ........++ ..+|++++|+|++...+..+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 000011 111111 257899999932 2223333444 5789999999998754333322
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH--HHcC-CcEEEEecCCCCCHHHHHHHHHHH
Q 027856 106 RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA--EREN-TFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 106 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
.++..+.. .+.|+++|+||+|+............... ...+ ..++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 34444433 47899999999999764433222111000 0012 347889999999999999888763
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=2.9e-13 Score=116.91 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=83.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhCc--------CCC----------CCcccceeEeEEEEEEEC-----CeEEEEE
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNE--------FSL----------ESKSTIGVEFATRSIRCD-----DKIVKAQ 65 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~--------~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~ 65 (217)
+.+..-+|+|+|+.++|||||..+|+... ... +....+++.-....+.+. ...+.++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 44677899999999999999999987421 100 111122222233334332 2358999
Q ss_pred EEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
|+||||+..|..-....++-+|++++|+|+...-..+....|...... +.|.++++||+|..
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence 999999999998888899999999999999987655554455555443 88999999999974
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.52 E-value=6.1e-15 Score=117.07 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=65.1
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH--H
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST--E 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--~ 139 (217)
+.+.||||||...... .....+|++++|+|++.....+.+.. .. .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5799999999543322 24689999999999976543211111 00 1457799999999865211110 1
Q ss_pred HHHHHHHHc-------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856 140 DATAFAERE-------NTFFMETSALESMNVENAFTEVLTQIYR 176 (217)
Q Consensus 140 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 176 (217)
+........ ..+++++||++|.|+++++++|.+.+..
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 222222221 3568999999999999999999987653
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.51 E-value=5e-15 Score=126.34 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc--CCC--------CCcc------cceeEeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE--FSL--------ESKS------TIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA 77 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~--~~~--------~~~~------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 77 (217)
.||+|+|+.++|||||..+|+... ... .+.. ..|++.....+.+....+.++|+||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 579999999999999999987421 100 0000 012222222223333446899999999999999
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
.....++-+|++++|+|+...-..+....|..... . ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~-~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK-M---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH-H---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH-c---CCCeEEEEecccccc
Confidence 99999999999999999998655444344444443 3 788999999999743
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=2.6e-13 Score=107.35 Aligned_cols=103 Identities=12% Similarity=0.068 Sum_probs=62.3
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 141 (217)
+.+.|+||+|...- .......+|.+++++|+......+.+... +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 58899999995321 12345789999999998654322111111 11 234577789999743221111112
Q ss_pred HHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 142 TAFAER----------ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 142 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
+.+... +..+++.+||+++.|++++++.|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222221 1456899999999999999999988654
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.41 E-value=5.4e-13 Score=104.10 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=79.3
Q ss_pred hhhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC-HHHHHHHHHHcC
Q 027856 72 QERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS-TEDATAFAEREN 149 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (217)
++++..+...++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++..+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667777888999999999999999986 88888889887765 389999999999997643222 344556666778
Q ss_pred CcEEEEecCCCCCHHHHHHHHH
Q 027856 150 TFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 150 ~~~~~~Sa~~~~~i~~~~~~i~ 171 (217)
.+++++||++|.|++++|+.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 8999999999999999998764
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=9.8e-12 Score=99.76 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=62.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcC-CCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhh-
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQER- 74 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~- 74 (217)
...+|+++|.+|+|||||+|+|++... .....++.+.+.....+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 467999999999999999999999776 4444455555555666666552 13689999999432
Q ss_pred ------hhhhhhhhhcCCcEEEEEEECCC
Q 027856 75 ------YRAITSAYYRGAVGALLVYDVTR 97 (217)
Q Consensus 75 ------~~~~~~~~~~~~d~ii~v~d~~~ 97 (217)
+.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234456789999999999863
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.35 E-value=6.5e-13 Score=106.39 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=53.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQERY 75 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 75 (217)
...++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34689999999999999999999998764444444555555555555442 235899999997654
Q ss_pred hh-------hhhhhhcCCcEEEEEEECCCh
Q 027856 76 RA-------ITSAYYRGAVGALLVYDVTRH 98 (217)
Q Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~~~~ 98 (217)
.+ .+..+++.+|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 43 455678999999999999753
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.25 E-value=1.5e-11 Score=89.43 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=68.6
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHH---HHHHHHHHHHhhc-CCCCcEEEEEeCC-CCCCccCCCHHHHHHHH
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFE---NVERWLKELRDHT-DSNIVIMLVGNKA-DLRHLRAVSTEDATAFA 145 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~l~~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~ 145 (217)
|++.++.+|..|+.++|++|||+|.+|.+-.+ ++..+...+.... -.+.|++|++||. |+.. .++..++.+..
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~L 188 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHEL 188 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHHc
Confidence 68899999999999999999999999874322 2222222232221 2578999999985 6743 55666665443
Q ss_pred HH----cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 146 ER----ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 146 ~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
.. ....+..|||.+|+|+.+.++|+.+.+.
T Consensus 189 ~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 189 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 22 2344899999999999999999986553
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.12 E-value=7.1e-11 Score=89.94 Aligned_cols=104 Identities=8% Similarity=-0.029 Sum_probs=73.8
Q ss_pred CChhhhhhhhhhhhcCCcEEEEEEECCChhhH---HHHHHHHHHHHhhc-CCCCcEEEEEeC-CCCCCccCCCHHHHHHH
Q 027856 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTF---ENVERWLKELRDHT-DSNIVIMLVGNK-ADLRHLRAVSTEDATAF 144 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~---~~~~~~~~~l~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~~~ 144 (217)
.|++.++.+|..|+.++|++|||+|.+|.+-+ +++..+...+.... -.+.|++|++|| .|+.. .++..++.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e~ 272 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE 272 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHHH
Confidence 46788999999999999999999999987532 22322223332221 248999999996 57754 5566665544
Q ss_pred HHH----cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856 145 AER----ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 145 ~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 175 (217)
... ....+..|||.+|+|+.+-++|+.+.+.
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 322 2334899999999999999999997664
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.06 E-value=1.8e-11 Score=98.01 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC-----cCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------h-hhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN-----EFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------A-ITS 80 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~-~~~ 80 (217)
.+|+++|.+|+|||||+|+|++. ..... ....+++.....+.+.. .+.++||||..... . ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 57999999999999999999986 21111 12222333344444444 26899999942111 1 111
Q ss_pred hhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856 81 AYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL 158 (217)
Q Consensus 81 ~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
.++ ...+.++++++......+..+. .+......+.|+++++||.|.....+. ....+.+.+..+..+.+.++.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~ 313 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKR 313 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred HHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCch
Confidence 122 6789999999984331111110 022223347899999999998764332 222334455566666666665
Q ss_pred CCCCH
Q 027856 159 ESMNV 163 (217)
Q Consensus 159 ~~~~i 163 (217)
...++
T Consensus 314 ~~~~~ 318 (369)
T 3ec1_A 314 YAAEF 318 (369)
T ss_dssp GTTTC
T ss_pred hhhhc
Confidence 54443
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.99 E-value=3e-10 Score=93.92 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=83.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHh------hCcCCCCCc----cc-----------ceeEeEEEEEE-------------
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFT------RNEFSLESK----ST-----------IGVEFATRSIR------------- 56 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~------~~~~~~~~~----~~-----------~~~~~~~~~~~------------- 56 (217)
.....|+++|.+|+||||++++|. +........ +. .+.........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998 433211110 00 01111110000
Q ss_pred ECCeEEEEEEEeCCChhhhh-hhh---hhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCC
Q 027856 57 CDDKIVKAQIWDTAGQERYR-AIT---SAY--YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI-MLVGNKAD 129 (217)
Q Consensus 57 ~~~~~~~~~l~Dt~G~~~~~-~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D 129 (217)
.....+.+.|+||||..... .+. ... +..+|.+++|+|+....... .....+.. ..|+ .+|+||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCc
Confidence 00023588999999954211 111 111 23789999999998754311 12222222 2454 78999999
Q ss_pred CCCccCCCHHHHHHHHHHcCCcE------------------EEEecCCCCC-HHHHHHHHHHH
Q 027856 130 LRHLRAVSTEDATAFAERENTFF------------------METSALESMN-VENAFTEVLTQ 173 (217)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~i~~~ 173 (217)
....... +.......+.++ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8642211 222233333332 3368888988 88888888754
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.98 E-value=2.2e-11 Score=97.42 Aligned_cols=135 Identities=13% Similarity=0.182 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCC-----CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh----h----hh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFS-----LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA----I----TS 80 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~----~~ 80 (217)
.+|+++|.+|+|||||+|+|++.... .......+++.....+.+... +.++||||...... + ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 57999999999999999999986321 111223333444444444442 78999999422110 1 11
Q ss_pred hh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHH-HHHHHcCCcEEEEec
Q 027856 81 AY--YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT-AFAERENTFFMETSA 157 (217)
Q Consensus 81 ~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa 157 (217)
.+ ....+.++++++.........+ ..+......+.|+++++||.|.....+ .+.+. .+.+..+..+.+.++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCCch
Confidence 11 3577889999887432111111 002222334789999999999876332 33333 344455655555444
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=2.7e-09 Score=85.30 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=73.5
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH----HH
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF----AE 146 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 146 (217)
..+.|.+.+..+++..+++++|+|++++. ..|...+..... +.|+++|+||+|+... ....++..++ +.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 45788999999999999999999999864 345555655543 7899999999999753 3334444333 55
Q ss_pred HcCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027856 147 RENT---FFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 147 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
..+. .++.+||++|.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 5676 69999999999999999988653
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.97 E-value=1.8e-09 Score=87.30 Aligned_cols=115 Identities=22% Similarity=0.294 Sum_probs=60.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc--cceeEeEEEEE--EECCeEEEEEEEeCCChhhh-------------
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--TIGVEFATRSI--RCDDKIVKAQIWDTAGQERY------------- 75 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~~~~------------- 75 (217)
.++++|+|++|+|||||++.|++..+...... ..+.......+ ...+....++++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 46799999999999999999999754321111 11111112222 11222347899999983211
Q ss_pred -hhhhhh----h---------hcC--CcE-EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856 76 -RAITSA----Y---------YRG--AVG-ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 76 -~~~~~~----~---------~~~--~d~-ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 132 (217)
...+.. + ... +|+ ++++.|...+-+..++ .++..+ . .+.|+|+|.||+|...
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---D-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---C-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---h-hCCCEEEEEcchhccc
Confidence 111111 1 112 233 5556666544333321 222222 2 4889999999999765
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.86 E-value=8.3e-09 Score=79.04 Aligned_cols=137 Identities=21% Similarity=0.202 Sum_probs=70.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-------cceeEeEEEEEEE--CCeEEEEEEEeCCChhh---------
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-------TIGVEFATRSIRC--DDKIVKAQIWDTAGQER--------- 74 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~--------- 74 (217)
.++++++|++|+|||||++.|++...+..... ..........+.. .+....++++|++|.-.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 57999999999999999999998643321100 0000001111111 11123779999998210
Q ss_pred -hhh----hhh--------------hhhcCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856 75 -YRA----ITS--------------AYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134 (217)
Q Consensus 75 -~~~----~~~--------------~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 134 (217)
... ... ..+..+++.++++|.. .+-+..+ ...+..+.. ..++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 000 000 1123468888998854 3322222 233334432 38999999999976532
Q ss_pred CCC--HHHHHHHHHHcCCcEEE
Q 027856 135 AVS--TEDATAFAERENTFFME 154 (217)
Q Consensus 135 ~~~--~~~~~~~~~~~~~~~~~ 154 (217)
+.. ...+.......++.+++
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 211 12223334445666554
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.86 E-value=8.1e-08 Score=77.63 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccc-eeEeE-EEEEEECCeEEEEEEEeCCChhh----hhh-hhhhhhcCC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI-GVEFA-TRSIRCDDKIVKAQIWDTAGQER----YRA-ITSAYYRGA 86 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~----~~~-~~~~~~~~~ 86 (217)
..++++|++|+|||||+|.+.|...+....-.. +.+.. ...+.-......+.+||++|... ... +...-+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 479999999999999999999854322211111 11000 01111111112578999998421 111 111123344
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------CccCCCHHHH----HHHH----HHcC--
Q 027856 87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR-------HLRAVSTEDA----TAFA----EREN-- 149 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~-- 149 (217)
+..++ ++..... -+.+ .+...+.. .+.|+++|.||.|+. .-+....++. .++. ...+
T Consensus 150 ~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 150 DFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp SEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55555 7765311 1111 22233333 278999999999973 1112223332 3332 1222
Q ss_pred -CcEEEEec--CCCCCHHHHHHHHHHHHHHHH
Q 027856 150 -TFFMETSA--LESMNVENAFTEVLTQIYRVV 178 (217)
Q Consensus 150 -~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~~ 178 (217)
...|.+|+ ..+.|++++.+.+.+.+.+..
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 35788999 556679999998887765443
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.81 E-value=9.7e-09 Score=82.17 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=71.3
Q ss_pred ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH----HH
Q 027856 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF----AE 146 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 146 (217)
.++.|.+....++..++++++|+|++++.+ .|...+..... +.|+++|+||+|+... ....+...++ +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 478899999999999999999999999763 34444444332 7899999999999763 2333444333 45
Q ss_pred HcCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027856 147 RENT---FFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 147 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 173 (217)
..+. .++.+||++|.|++++++.+.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 5665 68999999999999999988654
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.76 E-value=2.1e-08 Score=77.31 Aligned_cols=102 Identities=13% Similarity=0.035 Sum_probs=70.3
Q ss_pred EEeCCChh-hhhhhhhhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHH
Q 027856 66 IWDTAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFE--NVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT 142 (217)
Q Consensus 66 l~Dt~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 142 (217)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..++ .++|.++|+||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 44578865 44456667789999999999999987653 233332 378999999999997621 122223
Q ss_pred HHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856 143 AFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177 (217)
Q Consensus 143 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 177 (217)
++.+..+.+++.+||.++.|+.++++.+.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44445578899999999999999999888776644
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.70 E-value=1.4e-08 Score=78.27 Aligned_cols=58 Identities=21% Similarity=0.430 Sum_probs=36.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
...++|+++|.||+|||||+|+|.+....... ...+++.....+.... .+.+|||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCc
Confidence 34689999999999999999999987643322 2223333333333333 5789999994
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.67 E-value=8.8e-09 Score=78.56 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+. .+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 6999999999999999999998775432 23334433333333332 57899999954
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.57 E-value=5.7e-07 Score=73.09 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=75.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhC------cCCC----CCc-----------ccceeEeEEEEEEEC------------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRN------EFSL----ESK-----------STIGVEFATRSIRCD------------ 58 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~------~~~~----~~~-----------~~~~~~~~~~~~~~~------------ 58 (217)
.+.-|+++|.+|+||||++..|... .... .+. ...+..........+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999988742 1100 000 001111111000000
Q ss_pred -CeEEEEEEEeCCChhhh-----hhhhh-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 59 -DKIVKAQIWDTAGQERY-----RAITS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 59 -~~~~~~~l~Dt~G~~~~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
...+.+.|+||+|.... ..+.. .....+|.+++|+|+....... .....+... -.+..+|+||+|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCc
Confidence 01268899999993211 11111 1223579999999987654322 222333322 23557899999975
Q ss_pred CccCCCHHHHHHHHHHcCCcEEEEec
Q 027856 132 HLRAVSTEDATAFAERENTFFMETSA 157 (217)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
. ..-.+.......+.++.+++.
T Consensus 253 ~----~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 253 A----KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp S----SHHHHHHHHHTTCCCEEEEEC
T ss_pred c----cccHHHHHHHHHCCCEEEEEc
Confidence 4 233455566677888777765
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.40 E-value=1.8e-06 Score=70.26 Aligned_cols=131 Identities=15% Similarity=0.052 Sum_probs=70.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc------CC-----CCCcc------------------c--ceeEeE-E--EEEEEC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE------FS-----LESKS------------------T--IGVEFA-T--RSIRCD 58 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~------~~-----~~~~~------------------~--~~~~~~-~--~~~~~~ 58 (217)
...|+++|.+|+||||+++.|.... .. ..... . .+.+.. . ..+. .
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~-~ 177 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME-K 177 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH-T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH-H
Confidence 4579999999999999999887631 10 00000 0 000000 0 0000 0
Q ss_pred CeEEEEEEEeCCChhhh----hhhhh--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCC
Q 027856 59 DKIVKAQIWDTAGQERY----RAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNI-V-IMLVGNKADL 130 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~----~~~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~ivv~nK~D~ 130 (217)
...+.+.|+||||.... ..... ..+..+|.+++|+|+..... .......+. ... | ..+|+||+|.
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCC
Confidence 12357899999995321 11111 11236899999999876532 112222222 134 5 7899999997
Q ss_pred CCccCCCHHHHHHHHHHcCCcEEEE
Q 027856 131 RHLRAVSTEDATAFAERENTFFMET 155 (217)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
... ...+.......+.++..+
T Consensus 251 ~~~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 251 SAK----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp CST----THHHHHHHHHSSCCEEEE
T ss_pred ccc----hHHHHHHHHHHCCCEEEe
Confidence 531 122334555666665444
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.39 E-value=3.6e-07 Score=76.91 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=39.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-CcccceeEeEEEEE--EE-CCeEEEEEEEeCCChh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSI--RC-DDKIVKAQIWDTAGQE 73 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~ 73 (217)
...++|+|+|.+|+|||||+|+|++...... ...+.+.+.....+ .. ......+.|+||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 4568999999999999999999999874322 11111222222221 11 1222478999999943
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=5.7e-07 Score=73.07 Aligned_cols=140 Identities=15% Similarity=0.121 Sum_probs=77.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhC------cCCC----CCc-----------ccceeEeEEEEE-------------EE
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRN------EFSL----ESK-----------STIGVEFATRSI-------------RC 57 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~------~~~~----~~~-----------~~~~~~~~~~~~-------------~~ 57 (217)
...-|+++|++|+||||++..|... .... .+. ...+........ ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 3567899999999999999988732 1100 000 000111110000 00
Q ss_pred CCeEEEEEEEeCCChhh------h-hhhhh-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856 58 DDKIVKAQIWDTAGQER------Y-RAITS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~~~------~-~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 129 (217)
....+.+.++||||... + ..+.. ......+.+++|+|+....... .....+... -.+..+|+||.|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD 249 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMD 249 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEeccc
Confidence 11135788999999432 1 11111 1122568999999998654322 222333322 235678999999
Q ss_pred CCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (217)
... ..-.+.......+.++.+++. |+++
T Consensus 250 ~~a----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GTA----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp GCS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ccc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 743 344455666677888877775 4443
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.24 E-value=3.7e-06 Score=65.17 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=55.1
Q ss_pred EEEEEEeCCChhh--hh-hhhh-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 027856 62 VKAQIWDTAGQER--YR-AITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRH 132 (217)
Q Consensus 62 ~~~~l~Dt~G~~~--~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~ 132 (217)
+.+.++||||... .. .+.. .....+|.+++|+|+..... .......+.. ..+ ..+|+||+|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5789999999654 21 1111 12346899999999864321 1122223332 244 678999999743
Q ss_pred ccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 027856 133 LRAVSTEDATAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 165 (217)
....+.......+.++..++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23445566777888877776 4555543
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.24 E-value=2.4e-06 Score=72.63 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCcCC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNEFS 39 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~~~ 39 (217)
..|+|+|++|||||||++.+.|-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 45999999999999999999997543
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.21 E-value=6.3e-07 Score=68.27 Aligned_cols=93 Identities=11% Similarity=0.026 Sum_probs=61.4
Q ss_pred CCChhh-hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 027856 69 TAGQER-YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER 147 (217)
Q Consensus 69 t~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 147 (217)
.||+.. ........+.++|+++.|+|+.++.+.... .+. .. ++|.++|+||+|+.+.. ..+...++...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEK--TTKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence 466542 223456678899999999999988764321 111 11 78999999999997631 12223344455
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHH
Q 027856 148 ENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~i~~~~~~i~~ 172 (217)
.+.++ .+||.++.|+.++++.+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67778 9999999999998887654
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.16 E-value=8.3e-07 Score=68.96 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=59.9
Q ss_pred hhhhhhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHcCCcEE
Q 027856 77 AITSAYYRGAVGALLVYDVTRHVT-FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAERENTFFM 153 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (217)
.+.+..+.++|.+++|+|+.+|.. ...+..++..... .++|.++|+||+|+.+... ...+...+.....+.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 344456789999999999997653 3334444444433 3788999999999976321 012334444555688899
Q ss_pred EEecCCCCCHHHHHH
Q 027856 154 ETSALESMNVENAFT 168 (217)
Q Consensus 154 ~~Sa~~~~~i~~~~~ 168 (217)
.+||.++.|++++++
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999988877665543
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.03 E-value=5e-07 Score=74.55 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=63.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--hhhhh--------hh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--YRAIT--------SA 81 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~~ 81 (217)
..+.|+++|.+|+||||+.++|....... ..++.............+......+||..|.+. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999988653211 111111110000000011112346889988632 22222 45
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027856 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 127 (217)
++...++.++|+|.++. +.+....|+..+... +.+++++-..
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~ 158 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESI 158 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEEC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEE
Confidence 56667888999999887 455556677666554 4455544433
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.96 E-value=2.9e-05 Score=61.48 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=56.0
Q ss_pred hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHcCCcEEEEecCC
Q 027856 82 YYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAERENTFFMETSALE 159 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
...++|.+++|.+. .|. +...+..++...... ++|.++|+||+|+.+.... ..+.........|.+++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46789999988665 454 344455555444333 7788999999999763210 01122333445688899999999
Q ss_pred CCCHHHHHHH
Q 027856 160 SMNVENAFTE 169 (217)
Q Consensus 160 ~~~i~~~~~~ 169 (217)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999887654
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.95 E-value=2.1e-05 Score=61.71 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=74.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc---------------------cceeEeEEEEEEEC------------
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS---------------------TIGVEFATRSIRCD------------ 58 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~------------ 58 (217)
..--|+++|++|+||||+++.+.+...+..... ..+..+........
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 456789999999999999999886421111100 00100100000000
Q ss_pred -CeEEEEEEEeCCChhhhhh-hh---h--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856 59 -DKIVKAQIWDTAGQERYRA-IT---S--AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 59 -~~~~~~~l~Dt~G~~~~~~-~~---~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 131 (217)
.....+.++|++|...... .. . ...-..|-.+++.|+.... ++......+.... + ..++++||.|..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~~ 281 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDAD 281 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGGC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCCc
Confidence 0113566899999532111 10 0 0112468889999976543 2223333333321 2 236888999963
Q ss_pred CccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856 132 HLRAVSTEDATAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 164 (217)
. ..-.+.......+.++..++ +|++++
T Consensus 282 a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 282 A----RGGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp S----CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred c----chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 3 23335566777788877777 555543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.87 E-value=2.1e-05 Score=64.14 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....-|+|+|.+++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45667899999999999999999974
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.62 E-value=5.5e-05 Score=54.95 Aligned_cols=85 Identities=9% Similarity=-0.094 Sum_probs=54.8
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCccCCCHH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRHLRAVSTE 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~ 139 (217)
+.+.++|+|+.. .......+..+|.+++++..+... ..+..+++.+.... ..+.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 688999999854 233445666799999999876554 55666666665543 235677999999985431 123
Q ss_pred HHHHHHHHcCCcEE
Q 027856 140 DATAFAERENTFFM 153 (217)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (217)
+..+..+..+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 34455555554433
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.53 E-value=5.2e-05 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.725 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.+++++|++|+|||||++.+.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999888754
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.47 E-value=0.00035 Score=56.86 Aligned_cols=79 Identities=18% Similarity=0.077 Sum_probs=43.1
Q ss_pred EEEEEEeCCChhhhh-hhhh-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCcc
Q 027856 62 VKAQIWDTAGQERYR-AITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLR 134 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~ 134 (217)
+.+.|+||||..... .+.. .....++.+++|+|+...... ......+.. ..+ .-+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCccH
Confidence 578999999953221 1111 123468899999998754322 122222322 223 34789999975422
Q ss_pred CCCHHHHHHHHHHcCCc
Q 027856 135 AVSTEDATAFAERENTF 151 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~ 151 (217)
..+.......+.+
T Consensus 257 ----g~~l~i~~~~~~P 269 (433)
T 2xxa_A 257 ----GAALSIRHITGKP 269 (433)
T ss_dssp ----THHHHHHHHHCCC
T ss_pred ----HHHHHHHHHHCCC
Confidence 1233444445554
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=7.6e-05 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.38 E-value=9.7e-05 Score=53.64 Aligned_cols=22 Identities=50% Similarity=0.738 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.++++|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.37 E-value=3.5e-05 Score=59.81 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-.++++|++|+|||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 378999999999999999999764
No 242
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.37 E-value=0.0025 Score=46.53 Aligned_cols=85 Identities=9% Similarity=0.008 Sum_probs=54.8
Q ss_pred EEEEEEeCCCh-hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHH
Q 027856 62 VKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTED 140 (217)
Q Consensus 62 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 140 (217)
+.+.++|+|+. ... .....+..+|.+++++..+ ..+...+..+++.+.... +.++.+|+|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 67899999986 322 3344667899999998864 455666666777776533 4568899999986430 11344
Q ss_pred HHHHHHHcCCcEE
Q 027856 141 ATAFAERENTFFM 153 (217)
Q Consensus 141 ~~~~~~~~~~~~~ 153 (217)
..+..+..+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555555554433
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=0.00016 Score=52.43 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 9 DYDYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+....--|+|+|++|+|||||++.|.+.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3444556899999999999999999875
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.28 E-value=0.00014 Score=52.73 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-|+++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999875
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.28 E-value=0.00014 Score=52.16 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
++++|++|||||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999998753
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.27 E-value=0.00049 Score=53.36 Aligned_cols=23 Identities=61% Similarity=0.933 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-.++++|++|+|||||+|.|. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357999999999999999998 53
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.23 E-value=0.00017 Score=52.62 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57999999999999999998754
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.22 E-value=0.00018 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
--++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999998854
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.21 E-value=0.00018 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++|+|++|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998744
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.21 E-value=0.00022 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-.|+++|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999876
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.17 E-value=0.00027 Score=51.62 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=23.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.....|+|+|++|||||||++.|.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999887654
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.16 E-value=0.00024 Score=51.92 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
--|+++|++|||||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998764
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.15 E-value=0.00019 Score=50.78 Aligned_cols=20 Identities=50% Similarity=0.690 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027856 15 KVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~ 34 (217)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.13 E-value=0.00026 Score=50.83 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~ 36 (217)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.10 E-value=0.0003 Score=49.16 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998865
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.09 E-value=0.00027 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999988754
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.07 E-value=0.00032 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..|+++|++|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998764
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.06 E-value=0.00032 Score=50.87 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
..|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998765
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.05 E-value=0.00033 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
..-|+++|++|||||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999987643
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.04 E-value=0.00032 Score=55.54 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998654
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.04 E-value=0.00035 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
-++++|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 262
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.02 E-value=0.00033 Score=51.90 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988754
No 263
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.02 E-value=0.00055 Score=48.34 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|+++|++||||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356999999999999999988753
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.01 E-value=0.00038 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-.|+|+|++|||||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999988764
No 265
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.01 E-value=0.00041 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 266
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.00 E-value=0.00045 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....|+|+|+.|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988774
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.00 E-value=0.0005 Score=48.60 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.99 E-value=0.0004 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.|++.|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 269
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.99 E-value=0.00041 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.99 E-value=0.00043 Score=48.60 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 027856 14 FKVVLIGDSGVGKSNLLSRF 33 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l 33 (217)
+-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 271
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.99 E-value=0.00044 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.96 E-value=0.00042 Score=52.57 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.95 E-value=0.00043 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998764
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.95 E-value=0.00049 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~ 34 (217)
...|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.95 E-value=0.00045 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998764
No 276
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.95 E-value=0.00043 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.95 E-value=0.00046 Score=52.35 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.++++|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998874
No 278
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.93 E-value=0.00051 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
+.|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 279
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.92 E-value=0.00045 Score=52.52 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998864
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.92 E-value=0.00053 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-++++|.+|+|||||+++|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 281
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.92 E-value=0.00055 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.91 E-value=0.00056 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999988763
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.91 E-value=0.0005 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
No 284
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.91 E-value=0.00048 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 285
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.91 E-value=0.00049 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999988764
No 286
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.00055 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47999999999999999888753
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.90 E-value=0.00044 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.++++|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999886
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.90 E-value=0.00057 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998764
No 289
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.90 E-value=0.00056 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++|+|++|+|||||++.|.+-.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999888643
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.89 E-value=0.00054 Score=49.62 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|+|+|.+||||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999988754
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.89 E-value=0.00052 Score=52.11 Aligned_cols=23 Identities=48% Similarity=0.603 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999988764
No 292
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.00047 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-.++++|++|+|||||++.+.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999988654
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.88 E-value=0.00064 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-.|+++|++||||||+.+.|...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999988753
No 294
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.88 E-value=0.033 Score=42.93 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=53.4
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEE-EEEeCCCCCCccCCCHH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIM-LVGNKADLRHLRAVSTE 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~i-vv~nK~D~~~~~~~~~~ 139 (217)
+.+.|+|+|+.-... .....+..+|.++++... +..+...+..++..+.... ..+.+++ +|+|+.+.. .
T Consensus 157 yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~ 227 (307)
T 3end_A 157 TDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------D 227 (307)
T ss_dssp CSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------H
T ss_pred CCEEEEeCCCccchH-HHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------H
Confidence 688999998743221 123456789999999875 4555666666777766532 2345544 899999842 3
Q ss_pred HHHHHHHHcCCcEEE
Q 027856 140 DATAFAERENTFFME 154 (217)
Q Consensus 140 ~~~~~~~~~~~~~~~ 154 (217)
..+++.+..+.+++.
T Consensus 228 ~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 228 EVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCCcee
Confidence 355556666666544
No 295
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.88 E-value=0.00053 Score=51.32 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 296
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.88 E-value=0.00057 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 297
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.87 E-value=0.00064 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+.|+++|+|||||+|...+|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 298
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.87 E-value=0.00056 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.87 E-value=0.00057 Score=51.46 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999998764
No 300
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.86 E-value=0.00073 Score=49.07 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.86 E-value=0.00061 Score=49.32 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
..-|+++|++|||||||.+.|.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999887654
No 302
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.86 E-value=0.00064 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-|++.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998864
No 303
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.85 E-value=0.00057 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57999999999999999998753
No 304
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.85 E-value=0.00063 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 305
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.84 E-value=0.00072 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.+.|+++|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988653
No 306
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.83 E-value=0.00097 Score=48.46 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.....|+|+|.+|||||||.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999998875
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.83 E-value=0.00078 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..|+|.|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988763
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.83 E-value=0.00061 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 309
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.82 E-value=0.00069 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 310
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.81 E-value=0.0009 Score=47.77 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988765
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.81 E-value=0.00065 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999998764
No 312
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.81 E-value=0.00074 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++++|++|+|||||+|.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 579999999999999999998654
No 313
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.81 E-value=0.0004 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=15.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh-hC
Q 027856 15 KVVLIGDSGVGKSNLLSRFT-RN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~-~~ 36 (217)
-|+++|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 64
No 314
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.81 E-value=0.00094 Score=48.30 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...+.|++.|.+||||||+.+.|...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988753
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.80 E-value=0.00094 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 316
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.80 E-value=0.00066 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.79 E-value=0.0012 Score=51.49 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
....-|+|+|++|||||||++.+.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456789999999999999999888754
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.78 E-value=0.00035 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.|+|+|++|||||||++.+.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988754
No 319
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.78 E-value=0.00069 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988764
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.78 E-value=0.00099 Score=49.88 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
..+.|++.|.+||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 321
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.77 E-value=0.00097 Score=47.68 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|++.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988753
No 322
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.76 E-value=0.0028 Score=43.23 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999887654
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.76 E-value=0.00074 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998743
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.76 E-value=0.00091 Score=47.71 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.75 E-value=0.0013 Score=47.46 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=21.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
.....|++.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.73 E-value=0.00098 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998875
No 327
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.72 E-value=0.001 Score=47.36 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..|+++|.+||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 328
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.72 E-value=0.0044 Score=44.86 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 329
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.71 E-value=0.00096 Score=50.62 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998765
No 330
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.70 E-value=0.0011 Score=49.84 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=21.6
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 8 DDYDYLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
......+.|+|.|.+||||||+.+.|..
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3444567899999999999999998865
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.70 E-value=0.0012 Score=49.49 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...-|+|+|+.|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988763
No 332
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.70 E-value=0.00094 Score=49.82 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
-++++|++|||||||++.+++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 479999999999999998883
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.69 E-value=0.0012 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 334
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.69 E-value=0.00074 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-.++++|++|+|||+|++.+.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999988754
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.69 E-value=0.0013 Score=50.56 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....-|++.|++||||||+.++|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999753
No 336
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.68 E-value=0.0014 Score=51.20 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=22.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...++-|+|+|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 445678999999999999999887654
No 337
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.68 E-value=0.0014 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=21.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....-|+|+|++|||||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999877653
No 338
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.68 E-value=0.0015 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.052 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|++.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999988753
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.68 E-value=0.00081 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999988754
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.67 E-value=0.0013 Score=47.81 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..|++.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.65 E-value=0.0014 Score=47.25 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 478999999999999999998875
No 342
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.65 E-value=0.00063 Score=52.77 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999888753
No 343
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.65 E-value=0.00099 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.|+|+|++|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998874
No 344
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.64 E-value=0.0013 Score=46.34 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|+++|.+|||||||+.+|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998864
No 345
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.64 E-value=0.024 Score=46.18 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=20.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHh
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~ 34 (217)
..+..=|+|+|..++|||+|+|.|+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3456778899999999999999654
No 346
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.63 E-value=0.0011 Score=50.70 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~ 36 (217)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 347
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.62 E-value=0.0012 Score=48.60 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
+.|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 348
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.61 E-value=0.001 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999998754
No 349
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.61 E-value=0.0011 Score=46.86 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+|+++|.+||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999988753
No 350
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.61 E-value=0.0011 Score=52.58 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
-++++|++|||||||++.+.|-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 368999999999999999998653
No 351
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.61 E-value=0.0013 Score=46.60 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|++.|.+||||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456999999999999999988743
No 352
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.60 E-value=0.0013 Score=48.65 Aligned_cols=23 Identities=39% Similarity=0.731 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
...|++.|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998874
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.60 E-value=0.0017 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
....-|+|+|.+|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998875
No 354
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.59 E-value=0.0043 Score=42.38 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999987654
No 355
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.59 E-value=0.0015 Score=47.17 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
...|++.|.+||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999988753
No 356
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.59 E-value=0.0012 Score=52.35 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999988754
No 357
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.58 E-value=0.0014 Score=49.31 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
......|+++|.+||||||+.+.|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 445678999999999999999998754
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.57 E-value=0.0012 Score=51.14 Aligned_cols=84 Identities=15% Similarity=0.024 Sum_probs=45.8
Q ss_pred EEEEEeCCChhhh--------h----hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856 63 KAQIWDTAGQERY--------R----AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 63 ~~~l~Dt~G~~~~--------~----~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 130 (217)
.+.++||+|.... . .+........+.+++++|+...... ...+..+.... +. .++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~~-t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--GL-TGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--CC-SEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--CC-cEEEEECCcc
Confidence 4568999994211 1 1112334567888889998765432 22222232221 22 3688899986
Q ss_pred CCccCCCHHHHHHHHHHcCCcEEEEe
Q 027856 131 RHLRAVSTEDATAFAERENTFFMETS 156 (217)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (217)
... .-.+.......+.++.++.
T Consensus 260 ~a~----gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAK----GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCC----CTTHHHHHHHHCCCEEEEE
T ss_pred ccc----ccHHHHHHHHHCCCeEEEe
Confidence 432 1224455666777766665
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.0022 Score=45.74 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....|+++|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4577999999999999999988754
No 360
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.57 E-value=0.0012 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998764
No 361
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.55 E-value=0.0015 Score=46.72 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.55 E-value=0.0018 Score=50.26 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....-|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999988874
No 363
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.55 E-value=0.0014 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
++++|++|+|||||++.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999988643
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.54 E-value=0.0012 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998764
No 365
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.54 E-value=0.0013 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 37899999999999999998864
No 366
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.54 E-value=0.0012 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++|+|++|+|||||++.+.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 367
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.54 E-value=0.0014 Score=52.39 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999998864
No 368
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0014 Score=52.06 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998864
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.53 E-value=0.0012 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..|+|+|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 370
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.52 E-value=0.0014 Score=49.31 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-|+|+|++|||||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999988753
No 371
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.52 E-value=0.0015 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.|+|+|++|||||||++.+++.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
No 372
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.51 E-value=0.0014 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.--++++|+.||||||+++.+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999988763
No 373
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.51 E-value=0.0016 Score=46.66 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.50 E-value=0.0017 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-.+++.|++|+|||+|++.+....
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999887653
No 375
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.50 E-value=0.0016 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|++.|.+||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988753
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.50 E-value=0.0017 Score=46.58 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 377
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.49 E-value=0.0015 Score=52.02 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998854
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.49 E-value=0.0015 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
-++++|+.|||||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 368999999999999999988643
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.48 E-value=0.0017 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+.|+++|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988653
No 380
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.46 E-value=0.0019 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~ 34 (217)
...|+|+|++|||||||++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999988
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.45 E-value=0.00061 Score=49.67 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.45 E-value=0.002 Score=47.79 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....|+++|.+||||||+.+.|...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999988753
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.45 E-value=0.0019 Score=46.99 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|++.|.+||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988753
No 384
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.44 E-value=0.0028 Score=46.61 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-|+|+|+|||||+|....|...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3677999999999999888753
No 385
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.012 Score=46.27 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~ 36 (217)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988874
No 386
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.43 E-value=0.0016 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-|+|+|++|||||||++.+++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998754
No 387
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.42 E-value=0.0021 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.41 E-value=0.002 Score=45.16 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.38 E-value=0.0024 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999988753
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.38 E-value=0.0026 Score=44.98 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|+++|.+||||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988764
No 391
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0037 Score=48.67 Aligned_cols=26 Identities=8% Similarity=-0.068 Sum_probs=22.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
..-.+.+.|+||+|||++++.++...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999988654
No 392
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.37 E-value=0.0029 Score=45.62 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..+.+.|++.|.+||||||+.+.|...
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999988754
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.36 E-value=0.002 Score=49.08 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 38999999999999999988753
No 394
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.36 E-value=0.0016 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=16.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|++.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998643
No 395
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.36 E-value=0.0018 Score=53.82 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++|+|++|||||||++.+++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998754
No 396
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.35 E-value=0.0012 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998864
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.34 E-value=0.0026 Score=44.50 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
+.-.|++.|.+||||||+.+.|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.34 E-value=0.0021 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|++|+|||||++.+.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988543
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.34 E-value=0.0022 Score=45.52 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988865
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.34 E-value=0.0027 Score=46.48 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 401
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.34 E-value=0.002 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 48999999999999999988753
No 402
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0025 Score=47.35 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=22.3
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
+.+......|+++|.+||||||+.+.|..
T Consensus 10 ~~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 10 DDDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ----CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34455677899999999999999998875
No 403
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.33 E-value=0.002 Score=51.71 Aligned_cols=22 Identities=55% Similarity=0.795 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4799999999999999998874
No 404
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.32 E-value=0.0026 Score=47.10 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=22.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....-|++.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999998875
No 405
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.26 E-value=0.0024 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..--|+++|+.||||||+++.|.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3457899999999999999988763
No 406
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.26 E-value=0.0019 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-++|+|..|||||||++.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999764
No 407
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.25 E-value=0.085 Score=40.83 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhCc
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~ 37 (217)
+++.|++|+|||++++.+....
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh
Confidence 4556779999999999987543
No 408
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.25 E-value=0.0029 Score=47.01 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
..+.|++.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998874
No 409
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.23 E-value=0.0027 Score=44.98 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999998765
No 410
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.22 E-value=0.0027 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-.|++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999998764
No 411
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.20 E-value=0.0022 Score=45.21 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-.+++.|++|+|||+|++.+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3467999999999999999887653
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.20 E-value=0.0026 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.--|+|+|..|||||||++.|.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 456899999999999999988763
No 413
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.20 E-value=0.0012 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++++|+.|||||||++.+.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998864
No 414
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.19 E-value=0.0032 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~ 34 (217)
...+||+++|.+|||||||++.+.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999998753
No 415
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.19 E-value=0.0032 Score=48.17 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
..+.|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998873
No 416
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.19 E-value=0.0026 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-++|+|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988754
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.15 E-value=0.004 Score=45.33 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|+++|.+|+||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999987654
No 418
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.14 E-value=0.0035 Score=46.22 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988754
No 419
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.14 E-value=0.0051 Score=47.35 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=21.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
..+.-+++.|+||+|||+|++.+....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345677888999999999999987643
No 420
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.14 E-value=0.0036 Score=46.38 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=20.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
.+.++++++|.|||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998865
No 421
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0028 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-.++|+|+.|||||||++.|++-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 468999999999999999988753
No 422
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.13 E-value=0.0032 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
=+++++|+.|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999874
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.13 E-value=0.0032 Score=45.85 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
-++++|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 424
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.12 E-value=0.0037 Score=45.06 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
..+++.|++|+|||+|+..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999887644
No 425
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.11 E-value=0.0034 Score=46.50 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-++++|++|+|||||+..+.+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 426
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.10 E-value=0.0033 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
-.|+++|.+|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.09 E-value=0.0051 Score=45.55 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
...-|++.|.+||||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999987654
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.02 E-value=0.0037 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
-.|+++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 429
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.00 E-value=0.0047 Score=47.48 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999886
No 430
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.94 E-value=0.0042 Score=51.17 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
-++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999887
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.93 E-value=0.0045 Score=42.61 Aligned_cols=19 Identities=42% Similarity=0.718 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 027856 16 VVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~ 34 (217)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999865
No 432
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.92 E-value=0.0047 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++++|+.|+|||||++.+.|...
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998643
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.88 E-value=0.0048 Score=50.30 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998864
No 434
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.88 E-value=0.0044 Score=52.45 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999988754
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.85 E-value=0.005 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-+++.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 436
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.85 E-value=0.0047 Score=47.36 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-.+++.|++|+|||+|++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999998864
No 437
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.85 E-value=0.0048 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998764
No 438
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.84 E-value=0.004 Score=47.06 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.....|++.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999888754
No 439
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.84 E-value=0.0042 Score=45.15 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.+++.|+||+|||+++.++...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998887653
No 440
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.83 E-value=0.0053 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|++.|++|+|||+|++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998763
No 441
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.81 E-value=0.0047 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
-++++|+.|+|||||++.+.+...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 479999999999999999998643
No 442
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.81 E-value=0.0051 Score=52.07 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988754
No 443
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.80 E-value=0.006 Score=44.08 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
...|+++|++|+|||+|...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999998664
No 444
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.79 E-value=0.0069 Score=46.66 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=21.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.....+++.|++|+|||+|++.+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999866653
No 445
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.79 E-value=0.021 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..|++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999998654
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.77 E-value=0.0053 Score=46.79 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998886
No 447
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.76 E-value=0.0055 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-.|++.|++|+|||+|++.+.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999998864
No 448
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.73 E-value=0.0056 Score=47.22 Aligned_cols=134 Identities=15% Similarity=0.128 Sum_probs=69.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCcCC-CC----------Cccc-----------ceeEeEEEE----EE--E-CCeEEE
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-LE----------SKST-----------IGVEFATRS----IR--C-DDKIVK 63 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-~~----------~~~~-----------~~~~~~~~~----~~--~-~~~~~~ 63 (217)
.-.|+++|++|+||||++..|.+.... .. +... .+....... +. + .-..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 447899999999999999987642210 00 0000 000000000 00 0 002257
Q ss_pred EEEEeCCChhhhhh--h--hhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856 64 AQIWDTAGQERYRA--I--TSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 137 (217)
Q Consensus 64 ~~l~Dt~G~~~~~~--~--~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~ 137 (217)
+.|+||+|...... + ....+. ..+.+++|+|++.. ...+..+...+.. -+ ..-+|.||.|....
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~---- 254 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS---- 254 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC----
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc----
Confidence 89999999543221 1 111222 36778899987643 2333333333321 12 23466799997542
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 027856 138 TEDATAFAERENTFFMETS 156 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~S 156 (217)
...+.......+.++..++
T Consensus 255 ~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp CHHHHHHHHTCSCCCSEEC
T ss_pred hhHHHHHHHHHCcCEEEEE
Confidence 2355666777777755544
No 449
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.73 E-value=0.0062 Score=43.93 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 027856 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~ 35 (217)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 450
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0073 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++++|+.|+|||||++.+.+...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 589999999999999999998643
No 451
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.71 E-value=0.0045 Score=52.49 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999988754
No 452
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.69 E-value=0.0049 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999888754
No 453
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.66 E-value=0.0062 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..-|+|+|.+||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998764
No 454
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.64 E-value=0.0069 Score=46.94 Aligned_cols=87 Identities=20% Similarity=0.104 Sum_probs=48.4
Q ss_pred EEEEEEeCCChhhh--------hhhhhh----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856 62 VKAQIWDTAGQERY--------RAITSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~--------~~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 129 (217)
+.+.++||||.... ..+... .-...+.+++|+|+.... +.+... ..+.... +. .-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a-~~~~~~~--~i-~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQA-KIFKEAV--NV-TGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHH-HHHHHHS--CC-CEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHH-HHHHhcC--CC-CEEEEeCCC
Confidence 46899999994211 111111 113478899999986332 222221 2222221 22 357789999
Q ss_pred CCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856 130 LRHLRAVSTEDATAFAERENTFFMETSAL 158 (217)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
... ..-.+.......+.++.+++.-
T Consensus 261 ~~~----~gG~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 261 GTA----KGGITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp GCS----CTTHHHHHHHHHCCCEEEEECS
T ss_pred Ccc----chHHHHHHHHHHCCCEEEEeCC
Confidence 643 2233667777888887776543
No 455
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.63 E-value=0.0066 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-.+++.|++|+|||+|++.+.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 458999999999999999887643
No 456
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.62 E-value=0.0098 Score=45.02 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999998864
No 457
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.61 E-value=0.0064 Score=50.92 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++++|+.|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999998653
No 458
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.60 E-value=0.0044 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999887654
No 459
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.60 E-value=0.011 Score=45.55 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-.++++|++|+|||++++.+.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3479999999999999999887653
No 460
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.57 E-value=0.0099 Score=50.49 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++++|+.|+|||||++.+.|...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 589999999999999999998643
No 461
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.55 E-value=0.0079 Score=50.37 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++|+|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 462
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.53 E-value=0.0073 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.++|+|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998654
No 463
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0077 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+--|++.|+||+|||+|++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999998864
No 464
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.51 E-value=0.0074 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-.++|.|++|+|||||++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998864
No 465
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.50 E-value=0.0081 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999988763
No 466
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.49 E-value=0.0056 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999888753
No 467
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.49 E-value=0.0083 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988764
No 468
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.45 E-value=0.0084 Score=47.65 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~ 34 (217)
.+ .+|+|+.|+|||||++.++
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 45 4699999999999999876
No 469
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0084 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+-.|++.|+||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998864
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.45 E-value=0.0094 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999998865
No 471
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.45 E-value=0.0087 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988754
No 472
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.44 E-value=0.0094 Score=46.70 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998865
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.43 E-value=0.011 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~ 35 (217)
..+|+++|++|+||||+.+.|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999987665
No 474
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.41 E-value=0.012 Score=43.31 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 11 DYLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
....-|++.|.+||||||+++.|...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999987754
No 475
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.41 E-value=0.0084 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-+.|+|++|+|||||+..+.+..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.0086 Score=46.70 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-.|++.|++|+|||+|++.+....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3579999999999999999988643
No 477
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.40 E-value=0.009 Score=44.26 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-++++|++|+|||||+..++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998877653
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.0089 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcCC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEFS 39 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~~ 39 (217)
++++|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999986543
No 479
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.38 E-value=0.01 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCc
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.++|.|++|+|||+|++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988654
No 480
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.0093 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 12 YLFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.+--|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998864
No 481
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.32 E-value=0.0096 Score=46.69 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
.+++.|++|+||||+++.+.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999999887643
No 482
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.30 E-value=0.011 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
...|++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998764
No 483
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.29 E-value=0.0059 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=16.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
+-|+|.|++||||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.27 E-value=0.013 Score=43.54 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999988764
No 485
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.033 Score=41.01 Aligned_cols=28 Identities=11% Similarity=-0.040 Sum_probs=21.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 10 YDYLFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
+.+.+-|+..|.++.|||+|++++.+..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 3445555555999999999999999874
No 486
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.011 Score=47.52 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
+--|++.|+||+|||.|++++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 346899999999999999999864
No 487
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.23 E-value=0.016 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-|+|+|++|||||+|...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45889999999999999998754
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.18 E-value=0.013 Score=45.42 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-.+++.|++|+|||+|+..+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999887643
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.17 E-value=0.0051 Score=46.40 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 027856 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.+++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999998764
No 490
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.012 Score=46.06 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~ 36 (217)
+++.|++|+|||++++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988765
No 491
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.11 E-value=0.0016 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhCcC
Q 027856 16 VVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~~~~~ 38 (217)
++|+|+.|+|||||++.+.+-..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 36899999999999999887543
No 492
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.09 E-value=0.011 Score=46.84 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
.-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999988764
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.09 E-value=0.0075 Score=55.86 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
=+|+++|++|||||||++.|.+-
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 37899999999999999988764
No 494
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.07 E-value=0.014 Score=42.67 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856 13 LFKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
..-|++.|.+||||||+++.|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999988654
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.07 E-value=0.015 Score=41.02 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
.-|++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999998754
No 496
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.06 E-value=0.012 Score=42.84 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~ 35 (217)
+.|++.|.+||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999988765
No 497
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.05 E-value=0.013 Score=48.17 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~ 36 (217)
-+++++|++|+|||+|++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988765
No 498
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.05 E-value=0.014 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856 14 FKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~v~G~~~~GKSsli~~l~~~~ 37 (217)
-.+++.|++|+|||+|++.+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999887643
No 499
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.03 E-value=0.17 Score=37.21 Aligned_cols=89 Identities=10% Similarity=0.033 Sum_probs=58.6
Q ss_pred EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 141 (217)
+.+.++|+|+.. .......+..+|.+++++.. +..+...+..+++.+.........+.+|+|+.+... ....++
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~~- 192 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSDE- 192 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHHH-
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHHH-
Confidence 688999999853 22344567789999999886 466677777777777665433456889999998643 233333
Q ss_pred HHHHHHcCCcEEEEecC
Q 027856 142 TAFAERENTFFMETSAL 158 (217)
Q Consensus 142 ~~~~~~~~~~~~~~Sa~ 158 (217)
+.+..+.+++..-..
T Consensus 193 --~~~~~~~~v~~~ip~ 207 (245)
T 3ea0_A 193 --IEKVIGRPISKRIPQ 207 (245)
T ss_dssp --HHHHHTSCEEEEECC
T ss_pred --HHHHhCCCeEEECCC
Confidence 334456666554333
No 500
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.03 E-value=0.015 Score=42.13 Aligned_cols=19 Identities=42% Similarity=0.718 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 027856 16 VVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 16 I~v~G~~~~GKSsli~~l~ 34 (217)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999754
Done!