BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027857
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 281 bits (718), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/207 (72%), Positives = 173/207 (83%)
Query: 9 SNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGC 68
S F+++CVFCGSHSG+R VFSDAA+ELGNELV+RKI+LVYGGGSVGL GLIS+ VY GG
Sbjct: 7 SRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLXGLISRRVYEGGL 66
Query: 69 HVLGIIPKALMPLEISGETVGEVRTVSDMHXXXXXXXXXXXXXXXLPGGYGTMEELLEMI 128
HVLGIIPKAL P+EISGETVG+VR V+D H LPGGYGT EELLE I
Sbjct: 67 HVLGIIPKALXPIEISGETVGDVRVVADXHERKAAXAQEAEAFIALPGGYGTXEELLEXI 126
Query: 129 TWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKMEQ 188
TWSQLGIHKK VGLLNVDGYYN+LLALFD GV+EGFIKP AR I++SAP+AKEL EK E+
Sbjct: 127 TWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELXEKXEE 186
Query: 189 YTPAHEHVAPHESWQMEQLGDYPRQQN 215
YTP+H HVA HESW++E+LGDYP Q+N
Sbjct: 187 YTPSHXHVASHESWKVEELGDYPGQEN 213
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 251 bits (640), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/205 (60%), Positives = 155/205 (75%)
Query: 4 EGYTGSNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTV 63
E S F+R+CVFCGS G + + DAA++LGNELV R I+LVYGGGS+GL GL+SQ V
Sbjct: 6 ESXQKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAV 65
Query: 64 YAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHXXXXXXXXXXXXXXXLPGGYGTMEE 123
+ GG HV+GIIPK L P E++GETVGEVR V+D H LPGGYGT+EE
Sbjct: 66 HDGGRHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEE 125
Query: 124 LLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELL 183
LLE+ITW+QLGIH KPVGLLNVDGYYNSLL+ D V+EGFI P+AR+II+SAP+AKEL+
Sbjct: 126 LLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELV 185
Query: 184 EKMEQYTPAHEHVAPHESWQMEQLG 208
+K+E+Y P HE VA W+ E++G
Sbjct: 186 KKLEEYAPCHERVATKLCWEXERIG 210
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%)
Query: 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVL 71
K +CVF GS+ G + A ELG + I LVYGG VGL G I+ + G +
Sbjct: 2 KTICVFAGSNPGGNEAYKRKAAELGVYXAEQGIGLVYGGSRVGLXGTIADAIXENGGTAI 61
Query: 72 GIIPKALMPLEISGETVGEVRTVSDMHXXXXXXXXXXXXXXXLPGGYGTMEELLEMITWS 131
G+ P L E+ + + E+ V+ H PGG+GT EEL E++ W+
Sbjct: 62 GVXPSGLFSGEVVHQNLTELIEVNGXHERKAKXSELADGFISXPGGFGTYEELFEVLCWA 121
Query: 132 QLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKMEQYT 190
Q+GIH+KP+GL NV+GY+ +QEGF S ++I S+ EL+E+ + Y+
Sbjct: 122 QIGIHQKPIGLYNVNGYFEPXXKXVKYSIQEGFSNESHLKLIHSSSRPDELIEQXQNYS 180
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 1/171 (0%)
Query: 14 VCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73
VCV+C S + + AA E+G+ + R LV GGG+V MG ++Q A G H +G+
Sbjct: 25 VCVYCASGPTHPELLELAA-EVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKGGHTVGV 83
Query: 74 IPKALMPLEISGETVGEVRTVSDMHXXXXXXXXXXXXXXXLPGGYGTMEELLEMITWSQL 133
IPKAL+ E++ E+ M LPGG GT+EE E T L
Sbjct: 84 IPKALVHRELADVDAAELIVTDTMRERKREMEHRSDAFIALPGGIGTLEEFFEAWTAGYL 143
Query: 134 GIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLE 184
G+H KP+ LL+ G+Y+ LL V G++ A ++ + + LE
Sbjct: 144 GMHDKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDNVEAALE 194
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%)
Query: 45 NLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHXXXXXX 104
LV+GGG V MG +S A G +G+IPK L+ E++ E+ M
Sbjct: 46 TLVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRELADHDADELVVTETMWERKQVM 105
Query: 105 XXXXXXXXXLPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGF 164
LPGG GT++ELL++ T LG+H K + +L+ G+++ L A G+
Sbjct: 106 EDRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGY 165
Query: 165 IKPSARQIIISAPSAKELLE 184
+ +A + +I + + L+
Sbjct: 166 VSRTAMERLIVVDNLDDALQ 185
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 139 PVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS---AKELLEKMEQ--YTPAH 193
P G L VD S D EG IK A++++ISAP+ AK ++ + Q Y+PA
Sbjct: 98 PWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPAS 157
Query: 194 EHVAPHES 201
HV + S
Sbjct: 158 HHVVSNAS 165
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 139 PVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS---AKELLEKMEQ--YTPAH 193
P G L VD S D EG IK A++++ISAP+ AK ++ + Q Y+PA
Sbjct: 98 PWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPAS 157
Query: 194 EHVAPHES 201
HV + S
Sbjct: 158 HHVVSNAS 165
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 114 LPGGYGTMEELLEMITWSQL-GIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQI 172
LPGG+GT++EL E++ Q +H+ PV LL+ GY+ L+ + + P Q+
Sbjct: 138 LPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD-RGYWEGLVRWLAFLRDQKAVGPEDLQL 196
Query: 173 IISAPSAKELLEKMEQYTP 191
+E+++ ++ P
Sbjct: 197 FRLTDEPEEVVQALKAEAP 215
>pdb|3H7U|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
Akr4c9
Length = 335
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 138 KPVGLLNVD--GYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKME--QYTPAH 193
KP LL VD + ++ AL+D+G AR I +S S K+L + +E + PA
Sbjct: 147 KPENLLPVDIPSTWKAMEALYDSG--------KARAIGVSNFSTKKLADLLELARVPPAV 198
Query: 194 EHVAPHESWQMEQLGDYPRQQNVQ 217
V H SW+ +L ++ + + V
Sbjct: 199 NQVECHPSWRQTKLQEFCKSKGVH 222
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|B Chain B, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|C Chain C, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|D Chain D, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
Length = 195
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 6 YTGSNFKRVCVFCGSHSGNRRVFS---DAALELGNELVRRKINLVYGGGSVGLMGLISQT 62
Y + K+V V S N+ S D LELG L ++ LV+ GG G+ L+SQ
Sbjct: 18 YFQGHXKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGY-LVFNGGRDGVXELVSQG 76
Query: 63 VYAGGCHVLGIIP 75
V G V+GI+P
Sbjct: 77 VREAGGTVVGILP 89
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 127 MITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQ-EGFIKPSARQIIISAPSAK 180
M T SQLG KKPVG ++ G L+ + Q E ++KPSA A SA+
Sbjct: 458 MKTISQLGTGKKPVGTVSYMGRIEHLMQCRSDVKQAEDWLKPSAVLEAFEARSAR 512
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 139 PVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS---AKELLEKME--QYTPAH 193
P G L V+ S EG ++ AR+++ISAP+ AK L+ + +Y P+
Sbjct: 98 PWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSE 157
Query: 194 EHVAPHES 201
HV + S
Sbjct: 158 HHVVSNAS 165
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 139 PVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS---AKELLEKME--QYTPAH 193
P G L V+ S EG ++ AR+++ISAP+ AK L+ + +Y P+
Sbjct: 98 PWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSE 157
Query: 194 EHVAPHES 201
HV + S
Sbjct: 158 HHVVSNAS 165
>pdb|3H7R|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
Akr4c8
Length = 331
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 144 NVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLE--KMEQYTPAHEHVAPHES 201
++ + ++ AL+D+G AR I +S S+K+L + + + TPA V H
Sbjct: 151 DITSTWKAMEALYDSG--------KARAIGVSNFSSKKLTDLLNVARVTPAVNQVECHPV 202
Query: 202 WQMEQLGDYPRQQNVQ 217
WQ + L + + + V
Sbjct: 203 WQQQGLHELCKSKGVH 218
>pdb|3MTJ|A Chain A, The Crystal Structure Of A Homoserine Dehydrogenase From
Thiobacillus Denitrificans To 2.15a
Length = 444
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 142 LLNVDGYYNSLLALFDN-------GVQEGFIKPSARQIIISAPSAKELLEKMEQYTPAHE 194
+ NVDG N++L D G G +P+A ++ +L++ +T
Sbjct: 280 IANVDGAXNAVLVKGDAVGPTLYYGAGAGS-EPTASAVV------ADLVDVTRLHTADPH 332
Query: 195 HVAPHESWQMEQLGDYP 211
H PH ++Q +QL D P
Sbjct: 333 HRVPHLAFQPDQLADTP 349
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 139 PVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS---AKELLEKM--EQYTPAH 193
P G L V+ S EG ++ AR+++ISAP+ AK + + Y P
Sbjct: 98 PWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPRE 157
Query: 194 EHVAPHES 201
+HV + S
Sbjct: 158 QHVVSNAS 165
>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
pdb|2QQO|B Chain B, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
Length = 460
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 129 TW-SQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKME 187
TW S + + + G D +++L + + + I S+ Q + +PSA L+
Sbjct: 272 TWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQEYLWSPSAARLVSSRS 331
Query: 188 QYTPAHEHVAPHESWQMEQLG 208
+ P P E W LG
Sbjct: 332 GWFPRIPQAQPGEEWLQVDLG 352
>pdb|2QQJ|A Chain A, Crystal Structure Of The B1b2 Domains From Human
Neuropilin-2
Length = 325
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 129 TW-SQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKME 187
TW S + + + G D +++L + + + I S+ Q + +PSA L+
Sbjct: 143 TWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQEYLWSPSAARLVSSRS 202
Query: 188 QYTPAHEHVAPHESWQMEQLG 208
+ P P E W LG
Sbjct: 203 GWFPRIPQAQPGEEWLQVDLG 223
>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 579
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 129 TW-SQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKME 187
TW S + + + G D +++L + + + I S+ Q + +PSA L+
Sbjct: 391 TWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQEYLWSPSAARLVSSRS 450
Query: 188 QYTPAHEHVAPHESWQMEQLG 208
+ P P E W LG
Sbjct: 451 GWFPRIPQAQPGEEWLQVDLG 471
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 114 LPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLL 153
LPGG GT+ EL ++ W+ L + + L VD Y+ LL
Sbjct: 104 LPGGVGTLAEL--VLAWNLLYLRRGVGRPLAVDPYWLGLL 141
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 48/131 (36%), Gaps = 13/131 (9%)
Query: 16 VFC-GSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGG------C 68
V C G HS N V E+G+EL R++N+ G G G
Sbjct: 150 VVCWGGHSINE-VEYQYTREVGHELGLRELNICTGCGPGAXEGPXKGAAVGHAKQRYSEY 208
Query: 69 HVLGIIPKALMPLEISGETVGEVRTVSDMHXXXXXXXXXXXXXXXLPGGYGTMEELLEMI 128
LG+ +++ E V E+ D+ PGG GT EELL +
Sbjct: 209 RYLGLTEPSIIAAEPPNPIVNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYI- 267
Query: 129 TWSQLGIHKKP 139
LGI P
Sbjct: 268 ----LGIXXHP 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,784,520
Number of Sequences: 62578
Number of extensions: 266190
Number of successful extensions: 570
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 24
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)