Query 027857
Match_columns 217
No_of_seqs 140 out of 1177
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 2E-55 4.4E-60 365.0 21.1 177 12-188 1-177 (178)
2 COG1611 Predicted Rossmann fol 100.0 2.6E-45 5.6E-50 310.5 20.4 184 8-192 11-198 (205)
3 TIGR00725 conserved hypothetic 100.0 3.8E-42 8.3E-47 280.8 19.1 158 11-186 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 1.7E-39 3.7E-44 257.7 15.2 131 56-186 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.7 2.1E-15 4.5E-20 129.2 17.1 155 12-185 45-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.4 7.6E-12 1.6E-16 106.6 13.4 143 11-163 44-206 (212)
7 PRK10736 hypothetical protein; 99.3 7.4E-11 1.6E-15 108.2 16.8 157 12-187 108-284 (374)
8 COG0758 Smf Predicted Rossmann 99.1 1.7E-09 3.7E-14 98.4 15.0 158 12-188 112-288 (350)
9 PF12694 MoCo_carrier: Putativ 97.0 0.0088 1.9E-07 48.3 9.8 93 46-145 1-98 (145)
10 PF06908 DUF1273: Protein of u 95.5 0.51 1.1E-05 39.3 12.9 128 11-144 1-167 (177)
11 PF05014 Nuc_deoxyrib_tr: Nucl 95.4 0.036 7.7E-07 42.1 5.2 46 95-146 49-98 (113)
12 KOG3614 Ca2+/Mg2+-permeable ca 94.3 1.1 2.4E-05 47.4 13.9 152 13-168 120-326 (1381)
13 TIGR01133 murG undecaprenyldip 93.4 4.4 9.5E-05 35.5 14.6 72 103-190 246-319 (348)
14 PF13528 Glyco_trans_1_3: Glyc 93.3 2.5 5.3E-05 36.8 12.8 122 42-188 192-316 (318)
15 PLN02605 monogalactosyldiacylg 92.7 2.7 6E-05 38.1 12.6 71 100-190 275-345 (382)
16 PF11071 DUF2872: Protein of u 92.6 1.2 2.6E-05 35.5 8.7 74 98-187 63-137 (141)
17 PF10686 DUF2493: Protein of u 92.1 1.7 3.6E-05 30.8 8.2 61 13-76 5-66 (71)
18 PRK10565 putative carbohydrate 91.9 0.74 1.6E-05 44.3 8.2 126 42-186 254-383 (508)
19 COG0707 MurG UDP-N-acetylgluco 91.8 10 0.00022 34.8 16.2 81 95-191 240-323 (357)
20 COG3660 Predicted nucleoside-d 90.7 10 0.00023 34.0 13.4 58 104-170 241-299 (329)
21 TIGR03646 YtoQ_fam YtoQ family 90.4 2.4 5.2E-05 33.9 8.3 74 98-187 66-140 (144)
22 PRK13608 diacylglycerol glucos 89.0 8.4 0.00018 35.2 12.1 37 99-145 265-301 (391)
23 TIGR01426 MGT glycosyltransfer 88.7 10 0.00022 34.3 12.4 69 104-190 288-357 (392)
24 PRK12446 undecaprenyldiphospho 88.0 18 0.00039 32.8 13.6 31 103-143 248-278 (352)
25 cd03785 GT1_MurG MurG is an N- 87.7 18 0.00039 31.6 15.4 76 99-190 244-322 (350)
26 PRK13660 hypothetical protein; 87.6 4.6 0.0001 33.8 8.6 108 33-144 33-167 (182)
27 PRK00025 lpxB lipid-A-disaccha 86.3 7.3 0.00016 34.8 9.9 31 102-143 256-286 (380)
28 COG3613 Nucleoside 2-deoxyribo 84.9 6.8 0.00015 32.6 8.1 57 98-160 59-123 (172)
29 cd03784 GT1_Gtf_like This fami 84.4 12 0.00027 33.6 10.6 71 103-190 300-370 (401)
30 TIGR00215 lpxB lipid-A-disacch 84.1 30 0.00065 31.7 13.0 75 104-192 264-347 (385)
31 COG0063 Predicted sugar kinase 82.1 37 0.0008 30.3 12.6 132 41-187 31-168 (284)
32 TIGR03590 PseG pseudaminic aci 81.6 21 0.00044 31.3 10.5 36 99-145 233-268 (279)
33 TIGR00661 MJ1255 conserved hyp 81.0 39 0.00084 29.8 12.9 104 43-164 189-293 (321)
34 PF06258 Mito_fiss_Elm1: Mitoc 80.5 44 0.00095 30.1 14.0 77 104-189 225-308 (311)
35 PF04101 Glyco_tran_28_C: Glyc 78.7 1.8 4E-05 34.4 2.6 33 103-145 68-100 (167)
36 COG2185 Sbm Methylmalonyl-CoA 76.2 7.7 0.00017 31.3 5.5 43 30-73 27-69 (143)
37 PRK13609 diacylglycerol glucos 72.9 70 0.0015 28.6 15.0 72 99-190 265-336 (380)
38 COG1597 LCB5 Sphingosine kinas 71.7 7.8 0.00017 34.6 5.1 47 30-77 45-92 (301)
39 TIGR00196 yjeF_cterm yjeF C-te 71.2 29 0.00062 30.1 8.4 42 102-147 87-128 (272)
40 KOG2968 Predicted esterase of 68.3 8.7 0.00019 39.7 5.0 143 33-212 829-983 (1158)
41 PRK11914 diacylglycerol kinase 68.3 62 0.0013 28.5 10.1 28 111-143 67-94 (306)
42 KOG3349 Predicted glycosyltran 67.5 20 0.00044 29.5 6.1 50 106-165 79-129 (170)
43 COG1832 Predicted CoA-binding 66.8 11 0.00023 30.4 4.3 34 10-48 15-48 (140)
44 PRK14557 pyrH uridylate kinase 66.8 70 0.0015 27.8 9.9 41 12-52 5-54 (247)
45 PRK05749 3-deoxy-D-manno-octul 65.0 1.1E+02 0.0024 27.8 17.0 81 90-190 303-386 (425)
46 PRK13337 putative lipid kinase 63.6 19 0.00041 31.8 5.9 45 32-77 46-92 (304)
47 PRK00861 putative lipid kinase 63.2 16 0.00035 32.1 5.3 44 32-77 46-90 (300)
48 PF01256 Carb_kinase: Carbohyd 61.9 99 0.0022 26.7 9.9 125 46-188 2-133 (242)
49 PRK13055 putative lipid kinase 61.8 20 0.00042 32.3 5.7 45 32-77 48-94 (334)
50 cd07025 Peptidase_S66 LD-Carbo 61.1 61 0.0013 28.5 8.6 45 96-141 46-95 (282)
51 CHL00200 trpA tryptophan synth 61.1 40 0.00086 29.7 7.3 45 114-163 70-119 (263)
52 PF04007 DUF354: Protein of un 60.6 45 0.00097 30.5 7.8 63 104-189 245-307 (335)
53 PF00781 DAGK_cat: Diacylglyce 60.4 15 0.00032 28.1 4.1 43 33-76 43-90 (130)
54 TIGR03702 lip_kinase_YegS lipi 60.0 23 0.0005 31.1 5.7 45 32-77 41-89 (293)
55 COG1010 CobJ Precorrin-3B meth 60.0 1.2E+02 0.0025 26.8 9.8 109 35-146 64-196 (249)
56 PRK13054 lipid kinase; Reviewe 59.8 24 0.00052 31.1 5.8 44 33-77 46-93 (300)
57 COG4671 Predicted glycosyl tra 58.7 1.4E+02 0.0031 28.0 10.5 81 96-191 283-364 (400)
58 COG3573 Predicted oxidoreducta 58.6 24 0.00052 33.0 5.6 83 44-134 141-244 (552)
59 KOG4022 Dihydropteridine reduc 58.5 84 0.0018 26.5 8.3 69 42-118 3-83 (236)
60 smart00046 DAGKc Diacylglycero 58.5 13 0.00028 28.5 3.4 34 111-144 52-85 (124)
61 COG1819 Glycosyl transferases, 58.2 64 0.0014 30.0 8.6 91 39-145 234-328 (406)
62 TIGR00519 asnASE_I L-asparagin 57.9 27 0.00058 31.8 5.9 50 106-158 76-130 (336)
63 PRK08105 flavodoxin; Provision 57.5 21 0.00046 28.4 4.6 34 11-47 1-34 (149)
64 cd01171 YXKO-related B.subtili 57.5 63 0.0014 27.4 7.9 41 104-148 74-114 (254)
65 PF13607 Succ_CoA_lig: Succiny 56.8 57 0.0012 25.8 6.9 36 108-146 55-90 (138)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 55.9 1.4E+02 0.003 26.1 15.6 69 99-192 269-337 (363)
67 PRK09004 FMN-binding protein M 55.8 20 0.00044 28.4 4.2 34 11-47 1-34 (146)
68 cd03795 GT1_like_4 This family 55.6 72 0.0016 27.3 8.0 72 99-190 255-330 (357)
69 cd03820 GT1_amsD_like This fam 55.1 80 0.0017 26.2 8.0 71 100-190 245-317 (348)
70 PF00781 DAGK_cat: Diacylglyce 54.8 15 0.00034 28.0 3.3 39 104-144 48-89 (130)
71 COG1057 NadD Nicotinic acid mo 54.2 19 0.00041 30.5 3.9 34 10-43 1-34 (197)
72 COG0593 DnaA ATPase involved i 53.9 56 0.0012 30.8 7.3 104 30-143 96-214 (408)
73 PRK11914 diacylglycerol kinase 52.8 30 0.00066 30.4 5.3 45 31-77 52-97 (306)
74 cd00411 Asparaginase Asparagin 52.3 39 0.00085 30.5 6.0 49 107-158 78-131 (323)
75 PF00861 Ribosomal_L18p: Ribos 52.1 55 0.0012 25.2 6.0 41 29-69 70-118 (119)
76 PRK02645 ppnK inorganic polyph 52.0 22 0.00047 31.9 4.2 106 10-163 2-116 (305)
77 cd03808 GT1_cap1E_like This fa 51.6 56 0.0012 27.2 6.6 69 103-190 259-327 (359)
78 PF05159 Capsule_synth: Capsul 51.4 14 0.00031 31.8 2.9 37 103-151 195-231 (269)
79 cd00587 HCP_like The HCP famil 50.8 29 0.00062 30.7 4.7 153 8-186 91-257 (258)
80 cd05212 NAD_bind_m-THF_DH_Cycl 50.1 1.3E+02 0.0028 23.9 8.8 109 2-125 20-130 (140)
81 cd01400 6PGL 6PGL: 6-Phosphogl 49.6 83 0.0018 26.5 7.3 44 104-149 19-62 (219)
82 PRK11253 ldcA L,D-carboxypepti 49.6 1.7E+02 0.0036 26.2 9.5 39 95-134 48-92 (305)
83 PRK06015 keto-hydroxyglutarate 49.2 1.5E+02 0.0033 25.0 8.7 107 12-130 5-116 (201)
84 PRK12359 flavodoxin FldB; Prov 49.2 44 0.00095 27.5 5.3 24 56-79 101-124 (172)
85 PF02608 Bmp: Basic membrane p 48.8 30 0.00066 30.6 4.6 44 30-74 175-220 (306)
86 cd03822 GT1_ecORF704_like This 48.5 61 0.0013 27.5 6.4 70 99-191 259-333 (366)
87 cd03804 GT1_wbaZ_like This fam 48.4 94 0.002 27.1 7.7 73 99-192 253-326 (351)
88 TIGR00060 L18_bact ribosomal p 48.3 40 0.00087 26.1 4.6 40 29-68 65-112 (114)
89 cd02072 Glm_B12_BD B12 binding 47.6 1.4E+02 0.003 23.5 9.0 40 33-73 17-56 (128)
90 TIGR03575 selen_PSTK_euk L-ser 47.6 73 0.0016 29.2 7.0 49 137-188 125-174 (340)
91 KOG2467 Glycine/serine hydroxy 47.6 31 0.00066 32.5 4.5 37 30-66 328-374 (477)
92 KOG4435 Predicted lipid kinase 47.1 1.2E+02 0.0025 29.0 8.2 96 53-152 36-156 (535)
93 PRK02155 ppnK NAD(+)/NADH kina 47.1 1.2E+02 0.0026 27.0 8.2 61 9-73 3-93 (291)
94 PRK00696 sucC succinyl-CoA syn 47.0 2.3E+02 0.005 25.9 13.5 71 108-189 311-384 (388)
95 TIGR01182 eda Entner-Doudoroff 47.0 99 0.0021 26.3 7.3 107 12-130 9-120 (204)
96 cd04728 ThiG Thiazole synthase 46.9 2E+02 0.0044 25.3 13.8 112 11-145 93-205 (248)
97 PRK00726 murG undecaprenyldiph 46.7 2E+02 0.0044 25.2 15.5 75 100-191 245-323 (357)
98 cd03825 GT1_wcfI_like This fam 46.3 1.1E+02 0.0024 26.2 7.7 70 100-190 257-328 (365)
99 cd03801 GT1_YqgM_like This fam 46.2 84 0.0018 26.1 6.8 69 101-190 269-339 (374)
100 PTZ00032 60S ribosomal protein 46.1 47 0.001 28.5 5.0 40 29-68 162-209 (211)
101 PRK14569 D-alanyl-alanine synt 45.3 55 0.0012 28.8 5.7 38 11-48 3-40 (296)
102 PLN00141 Tic62-NAD(P)-related 44.6 46 0.001 28.0 5.0 40 3-50 9-48 (251)
103 PRK12361 hypothetical protein; 44.6 45 0.00099 32.1 5.4 44 32-77 286-330 (547)
104 cd03799 GT1_amsK_like This is 44.4 99 0.0022 26.4 7.1 73 99-190 247-325 (355)
105 TIGR00640 acid_CoA_mut_C methy 44.3 78 0.0017 24.8 5.8 43 30-73 17-59 (132)
106 KOG4175 Tryptophan synthase al 44.2 47 0.001 28.8 4.8 33 120-155 78-110 (268)
107 PRK09922 UDP-D-galactose:(gluc 44.1 1.3E+02 0.0028 26.6 8.0 76 99-193 249-325 (359)
108 PRK09461 ansA cytoplasmic aspa 43.7 58 0.0013 29.6 5.7 52 106-159 80-136 (335)
109 COG2081 Predicted flavoprotein 43.7 20 0.00043 33.7 2.7 27 45-73 6-32 (408)
110 CHL00139 rpl18 ribosomal prote 43.6 47 0.001 25.4 4.4 40 29-68 60-107 (109)
111 PRK06029 3-octaprenyl-4-hydrox 43.4 40 0.00087 28.1 4.3 81 107-188 78-168 (185)
112 PRK00208 thiG thiazole synthas 43.3 2.3E+02 0.0051 25.0 14.0 113 10-145 92-205 (250)
113 TIGR00421 ubiX_pad polyprenyl 43.2 1.1E+02 0.0023 25.4 6.8 80 107-188 75-165 (181)
114 COG0163 UbiX 3-polyprenyl-4-hy 42.9 48 0.001 28.1 4.6 81 108-188 81-170 (191)
115 TIGR02113 coaC_strep phosphopa 42.8 36 0.00079 28.1 3.9 83 106-189 75-176 (177)
116 COG0300 DltE Short-chain dehyd 42.8 2.4E+02 0.0052 25.0 10.1 59 10-76 5-63 (265)
117 PF00534 Glycos_transf_1: Glyc 42.6 1.4E+02 0.003 22.9 7.2 72 98-190 83-156 (172)
118 PLN02958 diacylglycerol kinase 42.6 55 0.0012 31.3 5.6 45 32-77 157-208 (481)
119 PF05690 ThiG: Thiazole biosyn 42.5 27 0.00058 30.7 3.1 93 33-145 113-205 (247)
120 PRK04183 glutamyl-tRNA(Gln) am 42.4 63 0.0014 30.5 5.8 48 108-158 153-205 (419)
121 cd03812 GT1_CapH_like This fam 42.2 96 0.0021 26.6 6.7 69 103-191 262-330 (358)
122 PRK01231 ppnK inorganic polyph 42.1 1.4E+02 0.0031 26.6 7.9 33 10-45 3-35 (295)
123 TIGR03449 mycothiol_MshA UDP-N 42.0 1.1E+02 0.0024 27.3 7.3 71 99-190 294-366 (405)
124 PRK00654 glgA glycogen synthas 41.9 2.9E+02 0.0064 25.7 14.2 72 102-189 351-425 (466)
125 cd06353 PBP1_BmpA_Med_like Per 41.8 75 0.0016 27.3 5.9 41 30-73 166-206 (258)
126 TIGR01198 pgl 6-phosphoglucono 41.7 1.6E+02 0.0036 25.0 8.0 42 105-149 25-66 (233)
127 cd00458 SugarP_isomerase Sugar 41.6 1.9E+02 0.004 23.3 8.2 45 104-149 16-60 (169)
128 PF11834 DUF3354: Domain of un 41.5 58 0.0013 22.9 4.2 33 109-147 19-51 (69)
129 COG3967 DltE Short-chain dehyd 41.3 33 0.00071 29.9 3.4 26 45-71 8-33 (245)
130 PLN02591 tryptophan synthase 40.8 1.3E+02 0.0028 26.3 7.2 45 114-163 57-106 (250)
131 PF14359 DUF4406: Domain of un 40.7 64 0.0014 23.8 4.6 37 99-141 51-90 (92)
132 cd02201 FtsZ_type1 FtsZ is a G 40.7 1.8E+02 0.0038 25.9 8.3 73 35-115 78-154 (304)
133 PRK05723 flavodoxin; Provision 40.6 47 0.001 26.6 4.2 33 12-47 1-33 (151)
134 PF09314 DUF1972: Domain of un 40.6 57 0.0012 27.3 4.7 40 11-50 1-42 (185)
135 COG1609 PurR Transcriptional r 40.4 2.7E+02 0.0058 24.9 10.4 41 10-52 57-97 (333)
136 TIGR03451 mycoS_dep_FDH mycoth 40.1 2.6E+02 0.0056 24.8 9.3 31 42-74 177-208 (358)
137 TIGR03492 conserved hypothetic 40.1 3E+02 0.0065 25.3 11.1 32 102-144 291-322 (396)
138 PRK08862 short chain dehydroge 40.1 1.5E+02 0.0032 24.7 7.3 53 12-72 6-58 (227)
139 PF04412 DUF521: Protein of un 40.0 3.2E+02 0.007 25.7 13.8 152 7-163 177-348 (400)
140 PRK13057 putative lipid kinase 40.0 62 0.0014 28.2 5.2 45 31-77 39-83 (287)
141 COG2085 Predicted dinucleotide 39.9 68 0.0015 27.6 5.1 52 11-73 1-52 (211)
142 COG0252 AnsB L-asparaginase/ar 39.9 47 0.001 30.6 4.5 34 109-145 102-135 (351)
143 KOG1201 Hydroxysteroid 17-beta 39.7 37 0.00079 30.7 3.6 29 41-70 37-65 (300)
144 PF03975 CheD: CheD chemotacti 39.7 47 0.001 25.3 3.8 45 2-47 31-81 (114)
145 COG0549 ArcC Carbamate kinase 39.6 70 0.0015 29.0 5.4 27 90-116 208-234 (312)
146 PF00106 adh_short: short chai 39.4 56 0.0012 25.1 4.3 30 44-74 2-31 (167)
147 cd03807 GT1_WbnK_like This fam 39.1 94 0.002 26.0 6.0 67 103-190 264-330 (365)
148 PF12146 Hydrolase_4: Putative 38.9 63 0.0014 22.9 4.2 17 32-48 32-48 (79)
149 PF01820 Dala_Dala_lig_N: D-al 38.8 38 0.00083 25.8 3.2 36 12-47 1-36 (117)
150 PF01182 Glucosamine_iso: Gluc 38.7 1.2E+02 0.0026 25.1 6.5 86 104-190 17-111 (199)
151 cd03794 GT1_wbuB_like This fam 38.6 2.4E+02 0.0052 23.7 12.9 73 99-190 286-363 (394)
152 cd03818 GT1_ExpC_like This fam 38.4 1.3E+02 0.0029 26.9 7.2 71 99-190 292-364 (396)
153 PRK15484 lipopolysaccharide 1, 38.4 1.7E+02 0.0036 26.5 7.9 71 99-190 268-342 (380)
154 cd00384 ALAD_PBGS Porphobilino 38.1 3.2E+02 0.0069 25.0 10.0 131 21-166 129-282 (314)
155 PF01081 Aldolase: KDPG and KH 37.8 1.6E+02 0.0035 24.8 7.2 107 12-130 9-120 (196)
156 TIGR00236 wecB UDP-N-acetylglu 37.4 2E+02 0.0043 25.5 8.1 75 91-190 257-332 (365)
157 PF02729 OTCace_N: Aspartate/o 37.0 1.5E+02 0.0032 23.5 6.5 79 59-157 57-135 (142)
158 COG0703 AroK Shikimate kinase 36.8 1.2E+02 0.0026 25.2 6.0 90 27-118 56-155 (172)
159 TIGR02153 gatD_arch glutamyl-t 36.6 82 0.0018 29.6 5.6 49 108-158 140-193 (404)
160 COG0716 FldA Flavodoxins [Ener 36.5 60 0.0013 25.5 4.2 34 11-47 1-34 (151)
161 cd03819 GT1_WavL_like This fam 36.4 1.3E+02 0.0028 25.8 6.6 67 101-188 257-326 (355)
162 PRK10886 DnaA initiator-associ 36.3 2E+02 0.0043 24.1 7.5 111 26-144 25-143 (196)
163 PRK12422 chromosomal replicati 36.2 2E+02 0.0044 27.2 8.3 106 30-144 120-242 (445)
164 PF09152 DUF1937: Domain of un 36.0 45 0.00098 26.0 3.2 39 99-143 71-114 (116)
165 TIGR00936 ahcY adenosylhomocys 36.0 1E+02 0.0022 29.1 6.1 70 44-123 197-266 (406)
166 cd03798 GT1_wlbH_like This fam 35.9 1.4E+02 0.003 24.9 6.6 72 100-192 271-344 (377)
167 PLN02271 serine hydroxymethylt 35.9 78 0.0017 31.3 5.5 42 29-70 441-492 (586)
168 PRK05920 aromatic acid decarbo 35.8 69 0.0015 27.2 4.6 100 107-207 93-204 (204)
169 cd03814 GT1_like_2 This family 35.7 1.1E+02 0.0024 25.9 6.0 68 102-190 261-330 (364)
170 PRK05583 ribosomal protein L7A 35.6 1.2E+02 0.0025 22.9 5.4 57 91-158 37-100 (104)
171 PRK06756 flavodoxin; Provision 35.5 88 0.0019 24.2 4.9 76 106-181 48-132 (148)
172 PRK09330 cell division protein 35.5 1.9E+02 0.0041 27.1 7.8 55 53-115 113-167 (384)
173 TIGR00147 lipid kinase, YegS/R 35.4 1E+02 0.0022 26.8 5.8 32 45-77 60-92 (293)
174 cd05844 GT1_like_7 Glycosyltra 35.3 2.1E+02 0.0045 24.7 7.8 70 102-191 259-335 (367)
175 PRK09880 L-idonate 5-dehydroge 35.1 2.4E+02 0.0053 24.8 8.3 30 43-74 171-201 (343)
176 PRK09355 hydroxyethylthiazole 34.9 1.4E+02 0.0031 25.8 6.6 40 104-147 51-93 (263)
177 PRK05333 NAD-dependent deacety 34.9 1.2E+02 0.0027 26.7 6.3 72 98-190 205-277 (285)
178 cd03800 GT1_Sucrose_synthase T 34.7 1.1E+02 0.0023 26.8 5.9 69 101-190 296-366 (398)
179 COG2022 ThiG Uncharacterized e 34.6 3.3E+02 0.0071 24.1 11.0 115 9-145 98-212 (262)
180 PRK03378 ppnK inorganic polyph 34.3 2.6E+02 0.0056 24.9 8.2 35 9-46 3-37 (292)
181 PRK02645 ppnK inorganic polyph 34.2 2.2E+02 0.0049 25.4 7.9 28 45-73 60-87 (305)
182 TIGR01501 MthylAspMutase methy 34.2 2.4E+02 0.0051 22.3 11.9 40 33-73 19-58 (134)
183 PF12831 FAD_oxidored: FAD dep 33.9 35 0.00077 31.7 2.8 27 45-73 2-28 (428)
184 PRK08887 nicotinic acid mononu 33.8 53 0.0012 26.8 3.5 24 11-34 1-24 (174)
185 TIGR01127 ilvA_1Cterm threonin 33.7 1.9E+02 0.0042 26.3 7.5 24 109-132 307-330 (380)
186 PF00710 Asparaginase: Asparag 33.7 1E+02 0.0022 27.6 5.6 37 106-144 71-107 (313)
187 PRK05476 S-adenosyl-L-homocyst 33.5 1.2E+02 0.0027 28.6 6.3 87 44-148 214-301 (425)
188 PRK06973 nicotinic acid mononu 33.5 73 0.0016 27.7 4.5 31 11-41 21-51 (243)
189 PF00290 Trp_syntA: Tryptophan 33.3 60 0.0013 28.6 3.9 40 120-162 70-110 (259)
190 cd02191 FtsZ FtsZ is a GTPase 33.0 3.6E+02 0.0077 24.1 9.0 36 42-77 85-124 (303)
191 cd00432 Ribosomal_L18_L5e Ribo 32.8 93 0.002 23.1 4.5 39 29-67 56-102 (103)
192 COG0159 TrpA Tryptophan syntha 32.8 2E+02 0.0043 25.6 7.1 114 44-188 20-141 (265)
193 PRK07313 phosphopantothenoylcy 32.8 56 0.0012 27.0 3.5 87 104-190 74-178 (182)
194 PRK04539 ppnK inorganic polyph 32.7 2.8E+02 0.006 24.8 8.2 34 10-46 4-37 (296)
195 PLN02945 nicotinamide-nucleoti 32.5 1.2E+02 0.0027 25.9 5.7 41 7-47 17-57 (236)
196 PRK13059 putative lipid kinase 32.4 1.1E+02 0.0024 26.9 5.5 39 38-77 51-91 (295)
197 PRK01372 ddl D-alanine--D-alan 32.3 90 0.002 27.1 5.0 37 12-48 5-41 (304)
198 cd07227 Pat_Fungal_NTE1 Fungal 32.0 38 0.00082 29.9 2.5 30 34-65 1-30 (269)
199 PF13380 CoA_binding_2: CoA bi 31.9 96 0.0021 23.5 4.5 31 12-47 1-31 (116)
200 cd03823 GT1_ExpE7_like This fa 31.9 2E+02 0.0043 24.2 6.9 72 99-191 254-328 (359)
201 cd04180 UGPase_euk_like Eukary 31.8 1.3E+02 0.0029 26.2 5.9 69 110-190 2-76 (266)
202 TIGR01753 flav_short flavodoxi 31.7 1.1E+02 0.0025 22.8 4.9 17 56-72 99-115 (140)
203 PRK14572 D-alanyl-alanine synt 31.7 92 0.002 28.1 5.0 39 11-49 1-39 (347)
204 PRK13111 trpA tryptophan synth 31.6 2.2E+02 0.0048 24.9 7.2 47 114-164 67-118 (258)
205 PRK13059 putative lipid kinase 31.6 1.2E+02 0.0025 26.7 5.6 34 107-144 56-89 (295)
206 PRK03708 ppnK inorganic polyph 31.5 66 0.0014 28.5 3.9 35 12-49 1-35 (277)
207 cd07225 Pat_PNPLA6_PNPLA7 Pata 31.4 52 0.0011 29.5 3.3 31 33-65 5-35 (306)
208 PF13692 Glyco_trans_1_4: Glyc 31.4 2.1E+02 0.0045 21.0 6.3 68 101-189 64-132 (135)
209 COG0112 GlyA Glycine/serine hy 31.3 48 0.001 31.2 3.1 41 29-69 290-340 (413)
210 cd06313 PBP1_ABC_sugar_binding 30.8 2.7E+02 0.0059 23.3 7.6 39 102-145 50-88 (272)
211 PRK14138 NAD-dependent deacety 30.6 1.2E+02 0.0025 26.3 5.3 70 98-189 169-240 (244)
212 COG0794 GutQ Predicted sugar p 30.3 1.5E+02 0.0033 25.3 5.7 77 12-117 40-140 (202)
213 cd03805 GT1_ALG2_like This fam 30.0 2.7E+02 0.0058 24.4 7.7 67 102-190 294-362 (392)
214 PF13407 Peripla_BP_4: Peripla 30.0 1.2E+02 0.0027 24.9 5.2 40 102-146 50-89 (257)
215 COG1063 Tdh Threonine dehydrog 30.0 1.1E+02 0.0023 27.7 5.2 29 43-73 170-199 (350)
216 TIGR03088 stp2 sugar transfera 29.9 3.8E+02 0.0082 23.4 14.6 67 103-190 268-336 (374)
217 PLN02494 adenosylhomocysteinas 29.8 2.1E+02 0.0045 27.7 7.2 74 43-126 255-329 (477)
218 smart00046 DAGKc Diacylglycero 29.7 1.2E+02 0.0026 23.0 4.7 32 45-77 52-87 (124)
219 PRK03372 ppnK inorganic polyph 29.7 3.2E+02 0.007 24.6 8.1 33 10-45 4-36 (306)
220 cd08185 Fe-ADH1 Iron-containin 29.6 2.7E+02 0.0059 25.4 7.8 74 34-118 16-94 (380)
221 cd04949 GT1_gtfA_like This fam 29.6 1.7E+02 0.0036 25.7 6.3 68 104-191 275-344 (372)
222 PRK07454 short chain dehydroge 29.5 3.1E+02 0.0067 22.4 7.6 58 8-73 3-60 (241)
223 PRK04885 ppnK inorganic polyph 29.4 3.1E+02 0.0068 24.1 7.8 56 13-73 2-67 (265)
224 PRK07102 short chain dehydroge 29.4 76 0.0016 26.2 3.8 16 176-191 196-211 (243)
225 PLN02527 aspartate carbamoyltr 29.2 4.2E+02 0.0091 23.7 10.2 130 61-191 59-224 (306)
226 TIGR03702 lip_kinase_YegS lipi 29.2 1.5E+02 0.0032 26.0 5.8 32 111-144 55-87 (293)
227 cd03821 GT1_Bme6_like This fam 29.2 2.5E+02 0.0055 23.4 7.1 67 101-190 275-343 (375)
228 PRK13937 phosphoheptose isomer 29.1 1.3E+02 0.0029 24.6 5.2 32 25-56 21-52 (188)
229 COG0148 Eno Enolase [Carbohydr 28.9 1.8E+02 0.0038 27.6 6.3 69 99-168 319-387 (423)
230 PRK05866 short chain dehydroge 28.7 2.5E+02 0.0054 24.3 7.1 33 12-52 41-73 (293)
231 PRK13495 chemoreceptor glutami 28.7 87 0.0019 25.6 3.9 47 1-48 74-123 (159)
232 PF01985 CRS1_YhbY: CRS1 / Yhb 28.7 62 0.0013 23.3 2.8 55 134-190 13-68 (84)
233 PLN02871 UDP-sulfoquinovose:DA 28.7 2.2E+02 0.0048 26.4 7.1 74 99-190 323-398 (465)
234 PTZ00075 Adenosylhomocysteinas 28.6 2.6E+02 0.0056 27.0 7.6 87 46-150 258-345 (476)
235 PRK07677 short chain dehydroge 28.6 88 0.0019 26.0 4.1 17 32-48 14-30 (252)
236 PRK02649 ppnK inorganic polyph 28.5 3.1E+02 0.0068 24.6 7.8 33 11-46 1-33 (305)
237 COG4742 Predicted transcriptio 28.4 1.1E+02 0.0024 27.1 4.8 89 98-211 13-102 (260)
238 PRK00625 shikimate kinase; Pro 28.4 1.9E+02 0.0042 23.5 6.0 83 28-113 59-148 (173)
239 PRK05867 short chain dehydroge 28.2 3.2E+02 0.007 22.5 7.5 54 12-73 10-63 (253)
240 PRK06180 short chain dehydroge 28.2 83 0.0018 26.7 4.0 33 12-52 5-37 (277)
241 PLN02586 probable cinnamyl alc 28.2 1.8E+02 0.0038 26.1 6.3 83 43-128 185-268 (360)
242 PF03853 YjeF_N: YjeF-related 28.1 1.5E+02 0.0033 23.8 5.3 34 9-47 23-56 (169)
243 KOG3974 Predicted sugar kinase 28.1 4.5E+02 0.0098 23.7 8.8 77 99-188 93-174 (306)
244 cd01408 SIRT1 SIRT1: Eukaryoti 28.0 1.5E+02 0.0032 25.4 5.5 70 98-186 166-235 (235)
245 KOG1718 Dual specificity phosp 27.9 56 0.0012 27.5 2.7 24 136-160 133-156 (198)
246 CHL00162 thiG thiamin biosynth 27.9 4.4E+02 0.0095 23.5 15.0 116 8-145 104-219 (267)
247 PRK09271 flavodoxin; Provision 27.9 1.1E+02 0.0025 24.2 4.5 31 13-46 2-32 (160)
248 cd04261 AAK_AKii-LysC-BS AAK_A 27.8 1.6E+02 0.0035 24.9 5.7 41 17-59 6-48 (239)
249 PF01202 SKI: Shikimate kinase 27.8 1.1E+02 0.0023 24.1 4.3 44 28-73 47-91 (158)
250 PRK07283 hypothetical protein; 27.8 1.3E+02 0.0029 22.2 4.5 56 90-154 37-96 (98)
251 PRK06703 flavodoxin; Provision 27.7 1.5E+02 0.0032 23.0 5.1 14 59-72 105-118 (151)
252 PRK06924 short chain dehydroge 27.7 1.1E+02 0.0023 25.3 4.4 29 11-47 1-29 (251)
253 PRK13488 chemoreceptor glutami 27.5 77 0.0017 25.8 3.4 47 1-48 74-125 (157)
254 TIGR02095 glgA glycogen/starch 27.4 5E+02 0.011 24.0 13.9 70 103-188 361-433 (473)
255 PRK13498 chemoreceptor glutami 27.4 81 0.0018 25.9 3.5 46 2-48 80-133 (167)
256 PF14947 HTH_45: Winged helix- 27.3 75 0.0016 22.3 2.9 40 149-189 33-72 (77)
257 PRK02649 ppnK inorganic polyph 27.0 1.2E+02 0.0026 27.3 4.8 53 106-164 67-126 (305)
258 PRK01966 ddl D-alanyl-alanine 26.8 1.2E+02 0.0026 27.1 4.9 37 11-47 3-39 (333)
259 COG4098 comFA Superfamily II D 26.7 2.1E+02 0.0045 26.9 6.3 53 26-78 100-155 (441)
260 PRK07890 short chain dehydroge 26.7 3.1E+02 0.0067 22.5 7.2 54 12-73 6-59 (258)
261 PRK05854 short chain dehydroge 26.7 93 0.002 27.3 4.1 33 12-52 15-47 (313)
262 PF10727 Rossmann-like: Rossma 26.7 94 0.002 24.3 3.7 30 9-47 8-37 (127)
263 cd04951 GT1_WbdM_like This fam 26.6 4E+02 0.0086 22.6 13.4 67 103-190 258-324 (360)
264 PF04230 PS_pyruv_trans: Polys 26.6 77 0.0017 25.8 3.4 41 106-146 62-108 (286)
265 cd06320 PBP1_allose_binding Pe 26.6 1.3E+02 0.0028 25.0 4.8 31 14-46 2-32 (275)
266 PLN02275 transferase, transfer 26.6 3.4E+02 0.0074 24.2 7.9 69 99-188 298-369 (371)
267 PRK14568 vanB D-alanine--D-lac 26.5 1.1E+02 0.0023 27.5 4.5 36 12-47 4-39 (343)
268 PRK07109 short chain dehydroge 26.5 3.1E+02 0.0067 24.3 7.5 54 12-73 9-62 (334)
269 PRK09860 putative alcohol dehy 26.5 2.3E+02 0.005 26.0 6.8 75 33-118 20-99 (383)
270 cd03811 GT1_WabH_like This fam 26.4 2.3E+02 0.0051 23.3 6.3 35 104-146 260-296 (353)
271 TIGR01832 kduD 2-deoxy-D-gluco 26.4 99 0.0021 25.5 4.0 19 32-50 18-36 (248)
272 cd03802 GT1_AviGT4_like This f 26.2 3E+02 0.0065 23.2 7.1 65 102-189 238-305 (335)
273 KOG0832 Mitochondrial/chloropl 26.0 2.2E+02 0.0047 25.1 5.9 45 26-71 91-136 (251)
274 cd04962 GT1_like_5 This family 25.9 2.8E+02 0.006 23.9 7.0 67 103-190 266-334 (371)
275 PF13614 AAA_31: AAA domain; P 25.9 1.4E+02 0.0031 22.7 4.6 32 12-46 1-32 (157)
276 TIGR01752 flav_long flavodoxin 25.8 1.7E+02 0.0037 23.4 5.2 20 56-75 100-119 (167)
277 KOG1207 Diacetyl reductase/L-x 25.7 88 0.0019 26.7 3.5 30 44-74 9-38 (245)
278 PRK07775 short chain dehydroge 25.7 3.7E+02 0.008 22.7 7.6 34 11-52 10-43 (274)
279 KOG2585 Uncharacterized conser 25.7 1.1E+02 0.0024 29.2 4.5 30 12-46 267-296 (453)
280 cd06259 YdcF-like YdcF-like. Y 25.6 1.2E+02 0.0026 23.4 4.1 10 110-119 36-45 (150)
281 TIGR01205 D_ala_D_alaTIGR D-al 25.6 96 0.0021 27.0 4.0 40 13-52 1-40 (315)
282 COG2242 CobL Precorrin-6B meth 25.6 1.8E+02 0.004 24.5 5.4 116 34-164 26-153 (187)
283 PLN02740 Alcohol dehydrogenase 25.6 1.6E+02 0.0035 26.5 5.5 83 43-128 200-289 (381)
284 PRK13057 putative lipid kinase 25.4 63 0.0014 28.2 2.7 32 107-144 50-81 (287)
285 PF03486 HI0933_like: HI0933-l 25.4 50 0.0011 30.9 2.2 25 45-71 3-27 (409)
286 PRK05593 rplR 50S ribosomal pr 25.3 1.2E+02 0.0027 23.4 4.0 40 29-68 68-115 (117)
287 PF03358 FMN_red: NADPH-depend 25.2 1.6E+02 0.0034 22.6 4.8 44 102-145 65-114 (152)
288 PRK13054 lipid kinase; Reviewe 25.1 1.9E+02 0.0041 25.4 5.7 35 108-144 57-91 (300)
289 TIGR02822 adh_fam_2 zinc-bindi 25.1 71 0.0015 28.2 3.0 31 43-75 167-197 (329)
290 TIGR02690 resist_ArsH arsenica 25.0 1.7E+02 0.0036 25.1 5.2 44 100-146 83-137 (219)
291 PRK03708 ppnK inorganic polyph 24.9 3.8E+02 0.0082 23.6 7.6 27 46-74 61-87 (277)
292 PF13580 SIS_2: SIS domain; PD 24.9 1.9E+02 0.0042 22.3 5.2 43 32-74 92-137 (138)
293 cd07062 Peptidase_S66_mccF_lik 24.7 1.1E+02 0.0023 27.4 4.1 45 96-141 50-99 (308)
294 PLN02896 cinnamyl-alcohol dehy 24.6 1.7E+02 0.0037 25.9 5.5 39 1-48 1-39 (353)
295 PRK07102 short chain dehydroge 24.6 1.3E+02 0.0029 24.7 4.5 28 12-47 2-29 (243)
296 PF03492 Methyltransf_7: SAM d 24.5 76 0.0017 28.8 3.2 42 147-188 198-242 (334)
297 COG0703 AroK Shikimate kinase 24.3 3.1E+02 0.0066 22.8 6.4 33 108-146 72-104 (172)
298 PRK08217 fabG 3-ketoacyl-(acyl 24.2 1.2E+02 0.0026 24.8 4.1 15 33-47 19-33 (253)
299 PRK09291 short chain dehydroge 24.2 1.1E+02 0.0024 25.2 4.0 33 12-52 3-35 (257)
300 cd06300 PBP1_ABC_sugar_binding 24.1 1.5E+02 0.0033 24.5 4.8 35 105-144 58-92 (272)
301 KOG2683 Sirtuin 4 and related 24.1 1.1E+02 0.0024 27.2 3.8 41 103-146 242-282 (305)
302 PRK12367 short chain dehydroge 24.0 1.1E+02 0.0024 25.9 3.9 30 44-74 16-45 (245)
303 KOG4180 Predicted kinase [Gene 24.0 42 0.00092 31.0 1.4 72 105-206 103-174 (395)
304 PRK07035 short chain dehydroge 24.0 1.2E+02 0.0026 25.1 4.1 31 12-50 9-39 (252)
305 PRK06194 hypothetical protein; 23.9 4.3E+02 0.0094 22.2 7.7 56 10-73 5-60 (287)
306 PRK08177 short chain dehydroge 23.9 1.4E+02 0.003 24.4 4.4 32 11-50 1-32 (225)
307 PRK15427 colanic acid biosynth 23.9 3.8E+02 0.0083 24.5 7.7 71 102-191 293-369 (406)
308 PF13604 AAA_30: AAA domain; P 23.8 2.7E+02 0.0059 22.8 6.2 36 43-78 19-57 (196)
309 PRK14571 D-alanyl-alanine synt 23.8 1.6E+02 0.0036 25.6 5.1 35 13-47 2-36 (299)
310 TIGR00253 RNA_bind_YhbY putati 23.5 2.2E+02 0.0047 21.3 4.9 54 135-190 14-68 (95)
311 KOG0339 ATP-dependent RNA heli 23.4 3.8E+02 0.0082 26.7 7.6 152 13-187 297-489 (731)
312 PRK09267 flavodoxin FldA; Vali 23.4 1.2E+02 0.0026 24.0 3.8 26 11-39 1-26 (169)
313 cd03809 GT1_mtfB_like This fam 23.3 4.5E+02 0.0098 22.1 10.3 66 102-190 267-334 (365)
314 cd01412 SIRT5_Af1_CobB SIRT5_A 23.3 2.7E+02 0.006 23.3 6.2 67 99-186 156-223 (224)
315 PRK14077 pnk inorganic polypho 23.3 1.7E+02 0.0036 26.1 5.0 110 7-164 6-122 (287)
316 PRK08339 short chain dehydroge 23.2 1.3E+02 0.0029 25.3 4.3 16 33-48 22-37 (263)
317 PRK12314 gamma-glutamyl kinase 23.2 1.2E+02 0.0026 26.5 4.0 44 11-54 9-61 (266)
318 PRK13497 chemoreceptor glutami 23.2 1.1E+02 0.0024 25.6 3.6 46 2-48 83-130 (184)
319 PRK11780 isoprenoid biosynthes 23.1 81 0.0018 26.8 2.9 39 11-50 1-40 (217)
320 PRK14075 pnk inorganic polypho 23.1 3.2E+02 0.007 23.7 6.7 53 12-74 1-69 (256)
321 TIGR00502 nagB glucosamine-6-p 23.0 3.3E+02 0.0071 23.5 6.8 41 108-149 33-75 (259)
322 PRK07023 short chain dehydroge 23.0 1.4E+02 0.0031 24.5 4.4 30 11-48 1-30 (243)
323 PRK05782 bifunctional sirohydr 22.9 5.9E+02 0.013 23.3 8.6 65 11-80 6-76 (335)
324 cd08189 Fe-ADH5 Iron-containin 22.9 3.5E+02 0.0076 24.6 7.2 14 105-118 81-94 (374)
325 COG0394 Wzb Protein-tyrosine-p 22.9 2.5E+02 0.0055 22.1 5.5 53 11-67 2-58 (139)
326 cd04246 AAK_AK-DapG-like AAK_A 22.8 2.1E+02 0.0045 24.2 5.4 35 17-52 6-42 (239)
327 TIGR03201 dearomat_had 6-hydro 22.8 5.3E+02 0.011 22.7 9.2 30 43-74 168-197 (349)
328 cd04823 ALAD_PBGS_aspartate_ri 22.6 6E+02 0.013 23.3 11.0 130 22-166 135-287 (320)
329 PRK09536 btuD corrinoid ABC tr 22.6 6.3E+02 0.014 23.5 9.6 31 96-126 327-357 (402)
330 cd04824 eu_ALAD_PBGS_cysteine_ 22.6 6E+02 0.013 23.3 11.2 130 22-166 134-288 (320)
331 PRK13494 chemoreceptor glutami 22.5 1.3E+02 0.0028 24.7 3.9 46 2-48 84-132 (163)
332 COG1597 LCB5 Sphingosine kinas 22.5 96 0.0021 27.7 3.4 30 109-143 59-89 (301)
333 PF01320 Colicin_Pyocin: Colic 22.5 71 0.0015 23.5 2.1 47 143-193 27-78 (85)
334 PF00464 SHMT: Serine hydroxym 22.5 57 0.0012 30.6 2.0 44 29-72 306-359 (399)
335 PRK11096 ansB L-asparaginase I 22.4 1.2E+02 0.0025 27.9 3.9 48 107-157 100-152 (347)
336 PRK00861 putative lipid kinase 22.3 1.7E+02 0.0036 25.7 4.8 30 108-143 58-87 (300)
337 TIGR02076 pyrH_arch uridylate 22.2 1.1E+02 0.0024 25.5 3.6 36 17-52 5-43 (221)
338 KOG4716 Thioredoxin reductase 22.2 1.4E+02 0.003 28.2 4.3 43 35-81 11-54 (503)
339 PRK12481 2-deoxy-D-gluconate 3 22.2 1.3E+02 0.0028 25.2 4.0 32 12-51 9-40 (251)
340 COG0800 Eda 2-keto-3-deoxy-6-p 22.0 5.1E+02 0.011 22.2 8.0 109 11-130 13-125 (211)
341 COG2519 GCD14 tRNA(1-methylade 22.0 2E+02 0.0044 25.4 5.2 121 43-174 95-223 (256)
342 PF03205 MobB: Molybdopterin g 22.0 1.3E+02 0.0027 23.6 3.6 32 12-47 1-32 (140)
343 PRK07062 short chain dehydroge 21.9 1.3E+02 0.0029 25.0 4.0 30 13-50 10-39 (265)
344 TIGR02482 PFKA_ATP 6-phosphofr 21.9 3.2E+02 0.007 24.5 6.6 57 15-73 64-121 (301)
345 COG3980 spsG Spore coat polysa 21.9 1.6E+02 0.0034 26.9 4.5 41 12-52 1-41 (318)
346 cd08233 butanediol_DH_like (2R 21.9 4.4E+02 0.0095 23.0 7.5 30 43-74 174-204 (351)
347 PF07442 Ponericin: Ponericin; 21.8 59 0.0013 18.9 1.2 24 31-63 5-28 (29)
348 PRK02261 methylaspartate mutas 21.8 3.9E+02 0.0085 20.8 12.6 40 33-73 21-60 (137)
349 KOG0503 Asparaginase [Amino ac 21.8 1.3E+02 0.0028 28.0 4.0 36 107-145 121-156 (368)
350 cd08181 PPD-like 1,3-propanedi 21.7 4.1E+02 0.0089 24.0 7.4 14 105-118 81-94 (357)
351 TIGR00520 asnASE_II L-asparagi 21.6 1.2E+02 0.0026 27.8 3.9 34 108-144 106-139 (349)
352 PF09848 DUF2075: Uncharacteri 21.5 5.9E+02 0.013 22.8 8.9 86 103-190 113-214 (352)
353 PRK08589 short chain dehydroge 21.5 1.4E+02 0.003 25.3 4.1 53 12-73 7-59 (272)
354 PRK15494 era GTPase Era; Provi 21.5 6E+02 0.013 22.8 10.1 85 105-193 129-218 (339)
355 COG0062 Uncharacterized conser 21.4 1.7E+02 0.0036 25.0 4.4 39 105-145 117-159 (203)
356 PF07287 DUF1446: Protein of u 21.4 2.4E+02 0.0052 26.1 5.8 52 23-74 51-106 (362)
357 TIGR02467 CbiE precorrin-6y C5 21.4 4.6E+02 0.0099 21.4 8.9 112 31-145 56-175 (204)
358 cd04193 UDPGlcNAc_PPase UDPGlc 21.3 6.1E+02 0.013 22.9 8.3 75 103-188 9-93 (323)
359 PRK06703 flavodoxin; Provision 21.2 3.9E+02 0.0084 20.6 12.9 33 11-46 1-33 (151)
360 PRK09072 short chain dehydroge 21.1 1.5E+02 0.0032 24.8 4.1 29 12-48 6-34 (263)
361 PRK15454 ethanol dehydrogenase 21.1 4.4E+02 0.0096 24.3 7.6 13 106-118 105-117 (395)
362 KOG1584 Sulfotransferase [Gene 21.0 79 0.0017 28.6 2.5 58 116-191 152-214 (297)
363 PRK07041 short chain dehydroge 21.0 1.1E+02 0.0025 24.7 3.3 27 46-73 1-27 (230)
364 PRK08277 D-mannonate oxidoredu 21.0 5E+02 0.011 21.7 7.6 56 10-73 9-64 (278)
365 cd08184 Fe-ADH3 Iron-containin 20.9 4.1E+02 0.0088 24.2 7.2 12 107-118 81-92 (347)
366 PRK13490 chemoreceptor glutami 20.8 1.4E+02 0.003 24.4 3.7 47 1-48 77-130 (162)
367 cd03817 GT1_UGDG_like This fam 20.8 4.9E+02 0.011 21.7 7.3 40 99-146 270-311 (374)
368 cd00401 AdoHcyase S-adenosyl-L 20.7 2.6E+02 0.0056 26.4 5.9 70 43-123 203-273 (413)
369 PF00890 FAD_binding_2: FAD bi 20.7 90 0.002 28.3 2.9 28 45-74 2-29 (417)
370 PF01965 DJ-1_PfpI: DJ-1/PfpI 20.7 63 0.0014 25.1 1.6 36 110-145 39-79 (147)
371 PRK11840 bifunctional sulfur c 20.6 6.7E+02 0.014 23.0 13.7 112 10-145 166-279 (326)
372 cd04260 AAK_AKi-DapG-BS AAK_AK 20.6 1.3E+02 0.0027 25.8 3.6 26 16-41 5-30 (244)
373 PRK05693 short chain dehydroge 20.6 1.5E+02 0.0032 25.1 4.0 32 11-50 1-32 (274)
374 PF09353 DUF1995: Domain of un 20.6 5E+02 0.011 21.5 9.1 37 108-150 98-134 (209)
375 PRK13337 putative lipid kinase 20.6 2.3E+02 0.0051 24.8 5.4 30 111-143 60-89 (304)
376 PLN03050 pyridoxine (pyridoxam 20.5 1.7E+02 0.0037 25.4 4.4 30 12-46 61-90 (246)
377 PRK07814 short chain dehydroge 20.5 1.6E+02 0.0034 24.7 4.2 33 12-52 11-43 (263)
378 PF12641 Flavodoxin_3: Flavodo 20.5 1.9E+02 0.0042 23.4 4.5 32 12-43 68-99 (160)
379 PRK06300 enoyl-(acyl carrier p 20.5 1.4E+02 0.003 26.4 4.0 16 33-48 24-39 (299)
380 TIGR01754 flav_RNR ribonucleot 20.4 1.8E+02 0.004 22.3 4.2 38 107-146 50-90 (140)
381 PRK06443 chorismate mutase; Va 20.4 2E+02 0.0044 24.0 4.6 42 27-72 91-132 (177)
382 PRK14072 6-phosphofructokinase 20.2 3.9E+02 0.0085 25.1 7.1 55 15-73 73-138 (416)
383 smart00516 SEC14 Domain in hom 20.2 2.7E+02 0.0059 21.0 5.2 63 120-187 79-145 (158)
384 PRK08303 short chain dehydroge 20.2 1.4E+02 0.0031 26.1 4.0 31 12-50 9-39 (305)
385 TIGR03366 HpnZ_proposed putati 20.2 1.8E+02 0.004 24.8 4.6 83 43-128 122-208 (280)
386 TIGR01105 galF UTP-glucose-1-p 20.2 1.1E+02 0.0024 27.2 3.2 60 111-187 6-68 (297)
387 cd01411 SIR2H SIR2H: Uncharact 20.1 1.2E+02 0.0026 25.8 3.3 44 99-146 163-206 (225)
388 PF03721 UDPG_MGDP_dh_N: UDP-g 20.1 1.3E+02 0.0028 24.7 3.5 25 47-73 5-29 (185)
389 cd06309 PBP1_YtfQ_like Peripla 20.0 2.2E+02 0.0048 23.6 5.0 38 103-145 51-88 (273)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=2e-55 Score=365.02 Aligned_cols=177 Identities=44% Similarity=0.804 Sum_probs=170.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEV 91 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~ 91 (217)
++|||||||+.+++++|++.|++||++||++|++||||||..|+|+|+++||+++||+|+||+|..+...+..++.+++.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 47999999999999999999999999999999999999995599999999999999999999999887777778888999
Q ss_pred EecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccc
Q 027857 92 RTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQ 171 (217)
Q Consensus 92 i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~ 171 (217)
+.+++|++||.+|++.|||||+||||+|||+|++++|+|.|+++|+||++++|.+|||+++++|++.|+++||+++++.+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCHHHHHHHHHh
Q 027857 172 IIISAPSAKELLEKMEQ 188 (217)
Q Consensus 172 ~i~~~~d~ee~~~~l~~ 188 (217)
.++++||++|++++|.+
T Consensus 161 ~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQN 177 (178)
T ss_pred cEEEcCCHHHHHHHHHh
Confidence 99999999999999965
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=2.6e-45 Score=310.47 Aligned_cols=184 Identities=36% Similarity=0.633 Sum_probs=169.7
Q ss_pred CCCcceEEEEcCCCCCCChH-HHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCC
Q 027857 8 GSNFKRVCVFCGSHSGNRRV-FSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGE 86 (217)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~-~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~ 86 (217)
...+++|||||||+.+.++. ||+.|++||++||++|+.|+|||++ |+|+|+++||.++||.|+||+|......+.++.
T Consensus 11 ~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~ 89 (205)
T COG1611 11 FIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPPNY 89 (205)
T ss_pred ccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccCcc
Confidence 34578999999999776666 9999999999999999999999988 999999999999999999999987766554455
Q ss_pred CcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCC--CCcEEEEeCCCcchHHHHHHH-hHHhcC
Q 027857 87 TVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIH--KKPVGLLNVDGYYNSLLALFD-NGVQEG 163 (217)
Q Consensus 87 ~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~--~kPiilln~~gf~~~l~~~l~-~~~~~g 163 (217)
..++++++.+|++||.+|+++|||||+||||+||++|++++|+|.|++.| .+|+++++.++||+++.+|++ +++.++
T Consensus 90 ~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~ 169 (205)
T COG1611 90 EVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEG 169 (205)
T ss_pred ccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhh
Confidence 56788999999999999999999999999999999999999999999988 899989999999999999998 999999
Q ss_pred CCCccccccEEEcCCHHHHHHHHHhhcCC
Q 027857 164 FIKPSARQIIISAPSAKELLEKMEQYTPA 192 (217)
Q Consensus 164 fi~~~~~~~i~~~~d~ee~~~~l~~~~~~ 192 (217)
++++...+++++++|++++++.+..+.+.
T Consensus 170 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 170 LISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred cCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 99999999999999999999999998765
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=3.8e-42 Score=280.80 Aligned_cols=158 Identities=22% Similarity=0.336 Sum_probs=134.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcce
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGE 90 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~ 90 (217)
|++|||||||+ .++.|++.|++||++||++|+.|||||+. |+|++++++|+++||+|+||+|..+. ..++..+.
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~---~~~~~~~~ 74 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF---AGNPYLTI 74 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc---cCCCCceE
Confidence 57899999998 47899999999999999999999999988 99999999999999999999998763 12333343
Q ss_pred EEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCcccc
Q 027857 91 VRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSAR 170 (217)
Q Consensus 91 ~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~ 170 (217)
.+....+++||++|++.|||||++|||+|||+|++++|++ +|||+++|.+|||+++++++ +.+.+|++ +
T Consensus 75 ~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~------~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~-- 143 (159)
T TIGR00725 75 KVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYAL------GGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E-- 143 (159)
T ss_pred EEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHc------CCCEEEEECCCcchHHHHHH--Hhcccccc-c--
Confidence 4444455889999999999999999999999999999984 89999999999999988864 33444444 2
Q ss_pred ccEEEcCCHHHHHHHH
Q 027857 171 QIIISAPSAKELLEKM 186 (217)
Q Consensus 171 ~~i~~~~d~ee~~~~l 186 (217)
.+.+++||+|+++.+
T Consensus 144 -~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 -RVIVEITPAEAVKLA 158 (159)
T ss_pred -eeEecCCHHHHHHhh
Confidence 699999999999865
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=1.7e-39 Score=257.72 Aligned_cols=131 Identities=43% Similarity=0.729 Sum_probs=125.0
Q ss_pred HHHHHHHHHHcCCeEEEEecCcccC-CccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcC
Q 027857 56 MGLISQTVYAGGCHVLGIIPKALMP-LEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLG 134 (217)
Q Consensus 56 M~a~~~gA~~~GG~viGV~P~~~~~-~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg 134 (217)
|+|+++||+++||+|+||+|+.+.+ ++.+++.+++++.+++|++||++|++.|||||+||||+|||+|++++|+|+|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999988 667777889999999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHHHHHH
Q 027857 135 IHKK-PVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKM 186 (217)
Q Consensus 135 ~~~k-Piilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l 186 (217)
.++| ||+|+|.+|||+++++|+++|+++||++++..+.+++++|++|++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 8877 999999999999999999999999999999999999999999999976
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.68 E-value=2.1e-15 Score=129.20 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=116.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCccc---CCcc-----
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALM---PLEI----- 83 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~---~~e~----- 83 (217)
+.|+|.|+.+. .+...+.|+++++.|+++|+.||+|++. |+|.+++++|+++||.+|+|+|..+. |.+.
T Consensus 45 ~~iaIvGsR~~--s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIVGTRRP--TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 68999986543 4666789999999999999999999999 99999999999999999999987652 2210
Q ss_pred --CCCC---cceE-----EecCCHHHHHHHHHHhcCeeEEccCC--CCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchH
Q 027857 84 --SGET---VGEV-----RTVSDMHERKAAMAQEAEAFIALPGG--YGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNS 151 (217)
Q Consensus 84 --~~~~---~~~~-----i~~~~m~~Rk~~~~~~sda~IvlpGG--~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~ 151 (217)
..+. +++. .....|..|++++...||++|++..+ .||+.++-.++.+ +|||+.+-.. .+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~~------gr~v~~~pg~-~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALEQ------GREVFAYPGD-LNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHHh------CCcEEEEcCC-CCCc
Confidence 0011 1111 12346789999999999999999986 7999999888765 8999998543 4454
Q ss_pred HHHHHHhHHhcCCCCccccccEEEcCCHHHHHHH
Q 027857 152 LLALFDNGVQEGFIKPSARQIIISAPSAKELLEK 185 (217)
Q Consensus 152 l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~ 185 (217)
..+.-..++++|- ....+++|+++.
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 4444556666653 234678887764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.39 E-value=7.6e-12 Score=106.63 Aligned_cols=143 Identities=16% Similarity=0.146 Sum_probs=88.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCccc---CCccC---
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALM---PLEIS--- 84 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~---~~e~~--- 84 (217)
.+.|+|.|+.++ ++...+.|+++++.|+++|+.+|+|+.. |++.+++++|+++||++|+|+|..+. |.+..
T Consensus 44 ~~~iaIvGsR~~--s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~ 120 (212)
T PF02481_consen 44 QPSIAIVGSRNP--SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELA 120 (212)
T ss_dssp S-EEEEE--SS----HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHH
T ss_pred CceEEEEcCCCC--CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHH
Confidence 468999985553 5777899999999999999999999999 99999999999999999999987662 32210
Q ss_pred -----CCCc-------ceEEecCCHHHHHHHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcch
Q 027857 85 -----GETV-------GEVRTVSDMHERKAAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYN 150 (217)
Q Consensus 85 -----~~~~-------~~~i~~~~m~~Rk~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~ 150 (217)
.+.+ ........|.+|++++...||++||+. =..||+.-+-.++.+ +|||+.+.. ..++
T Consensus 121 ~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~------gr~v~~vp~-~~~~ 193 (212)
T PF02481_consen 121 ERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQ------GRPVFAVPG-PIDD 193 (212)
T ss_dssp HHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHH------T--EEE-----TT-
T ss_pred HHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHc------CCeEEEEeC-CCCC
Confidence 1110 112234577899999999999999985 567999888877766 899999843 3555
Q ss_pred HHHHHHHhHHhcC
Q 027857 151 SLLALFDNGVQEG 163 (217)
Q Consensus 151 ~l~~~l~~~~~~g 163 (217)
+..+.-.+++++|
T Consensus 194 ~~~~G~~~Li~~G 206 (212)
T PF02481_consen 194 PNSEGNNELIKEG 206 (212)
T ss_dssp GGGHHHHHHHHTT
T ss_pred cccHHHHHHHHcC
Confidence 5555555666666
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.32 E-value=7.4e-11 Score=108.18 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=116.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcc---cCCc------
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKAL---MPLE------ 82 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~---~~~e------ 82 (217)
+.|+|.|+.++ ++.-.+.|+++++.||++|++||+|+.. |+..+++++|+++||++|+|++..+ +|.+
T Consensus 108 ~~iaiVGsR~~--s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~ 184 (374)
T PRK10736 108 PQLAVVGSRAH--SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAE 184 (374)
T ss_pred CeEEEECCCCC--CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHH
Confidence 57999986553 4666788999999999999999999999 9999999999999999999987654 3322
Q ss_pred -c-CCCC--cce-----EEecCCHHHHHHHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchH
Q 027857 83 -I-SGET--VGE-----VRTVSDMHERKAAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNS 151 (217)
Q Consensus 83 -~-~~~~--~~~-----~i~~~~m~~Rk~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~ 151 (217)
. ..++ ++| -....+|..||+++...|+++||+. =..|||.=.-.++.. +|+|+.+-. ..+++
T Consensus 185 ~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~~------gR~VfavPG-~i~~~ 257 (374)
T PRK10736 185 SIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALEQ------GRDVFALPG-PIGNP 257 (374)
T ss_pred HHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHHh------CCeEEEEcC-CCCCc
Confidence 1 0111 011 1223588999999999999999985 456787766666654 999998843 24454
Q ss_pred HHHHHHhHHhcCCCCccccccEEEcCCHHHHHHHHH
Q 027857 152 LLALFDNGVQEGFIKPSARQIIISAPSAKELLEKME 187 (217)
Q Consensus 152 l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~ 187 (217)
.-+-..+++++|- ....+++|+++.+.
T Consensus 258 ~s~G~n~LI~~GA---------~lv~~~~Di~~~l~ 284 (374)
T PRK10736 258 GSEGPHWLIKQGA---------YLVTSPEDILENLQ 284 (374)
T ss_pred cchhHHHHHHCCC---------EEeCCHHHHHHHhh
Confidence 4444556666653 45678999998884
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.13 E-value=1.7e-09 Score=98.39 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=110.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcc---cCCcc-----
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKAL---MPLEI----- 83 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~---~~~e~----- 83 (217)
+.++|.|+.+. +..-.+.++.|++.|+++|++||+|+.. |+..+++++|++++|++|+|+...+ +|++.
T Consensus 112 ~~vaIVGsR~~--S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIVGSRKP--SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEEeCCCC--CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 67999986554 4667899999999999999999999999 9999999999999999999986554 33321
Q ss_pred --CCCC--c-----ceEEecCCHHHHHHHHHHhcCeeEEccCC--CCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHH
Q 027857 84 --SGET--V-----GEVRTVSDMHERKAAMAQEAEAFIALPGG--YGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSL 152 (217)
Q Consensus 84 --~~~~--~-----~~~i~~~~m~~Rk~~~~~~sda~IvlpGG--~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l 152 (217)
..+. + ...+...+|+.||+++..+|++++|+..+ .|+|.=.-.++.. ++.|+.+-.+ ..++-
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Aleq------gR~VfavPg~-~~~~~ 261 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALEQ------GRDVFAVPGS-IDNPR 261 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHHc------CCeeEEcCCC-ccccc
Confidence 0111 1 12233458999999999999999998654 5887766655553 7888877543 22222
Q ss_pred HHHHHhHHhcCCCCccccccEEEcCCHHHHHHHHHh
Q 027857 153 LALFDNGVQEGFIKPSARQIIISAPSAKELLEKMEQ 188 (217)
Q Consensus 153 ~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 188 (217)
..=-.+++++|- ..+.+.+++++.+..
T Consensus 262 s~G~~~LI~~GA---------~lv~~~~dil~~l~~ 288 (350)
T COG0758 262 SEGCNKLIKEGA---------KLVTSAEDILEELNA 288 (350)
T ss_pred ccchHHHHHccc---------hhcccHHHHHHHhhh
Confidence 221234555542 223455666665543
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=96.99 E-value=0.0088 Score=48.25 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=52.9
Q ss_pred EEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccC-CCCcc-eEEecCCHHHHHHHHHHhcCeeEEccCCC---Cc
Q 027857 46 LVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEIS-GETVG-EVRTVSDMHERKAAMAQEAEAFIALPGGY---GT 120 (217)
Q Consensus 46 lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~-~~~~~-~~i~~~~m~~Rk~~~~~~sda~IvlpGG~---GT 120 (217)
||+||-. |+.+|+-+.|+++|-..=|-.|.....++.. +..|. ......+...|.++.++-||+-++|-=|- ||
T Consensus 1 IiSGGQT-GvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQT-GVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE----T-THHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCccc-cHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 6888876 9999999999999988888888765443321 22221 22235788999999999999998886332 33
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 121 MEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 121 L~El~e~~t~~qlg~~~kPiilln~ 145 (217)
++...++ ..|.||+.+++.
T Consensus 80 --~lT~~~a----~~~~KP~l~i~~ 98 (145)
T PF12694_consen 80 --ALTVEFA----RKHGKPCLHIDL 98 (145)
T ss_dssp --HHHHHHH----HHTT--EEEETS
T ss_pred --HHHHHHH----HHhCCCEEEEec
Confidence 2222222 257999998854
No 10
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=95.51 E-value=0.51 Score=39.25 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=61.8
Q ss_pred cceEEEEcCCCCC-------CChHHHHHHHHHHHH---HHHCCCeE-EEcCCCcCHHHHHHHHHHHcCC-----eEEEEe
Q 027857 11 FKRVCVFCGSHSG-------NRRVFSDAALELGNE---LVRRKINL-VYGGGSVGLMGLISQTVYAGGC-----HVLGII 74 (217)
Q Consensus 11 ~~~I~Vfggs~~~-------~~~~~~~~A~~lG~~---La~~g~~l-v~GGg~~GlM~a~~~gA~~~GG-----~viGV~ 74 (217)
|+++||-| .|+- .+|.....-..|-+. +-++|++- +|||.- |+.--+++.|++... +.+-++
T Consensus 1 M~~~~~TG-yR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~Ggal-G~D~waae~vl~LK~~yp~ikL~~v~ 78 (177)
T PF06908_consen 1 MKRCCFTG-YRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGAL-GVDLWAAEVVLELKKEYPEIKLALVL 78 (177)
T ss_dssp --EEEEEE---GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---T-THHHHHHHHHHTTTTT-TT-EEEEEE
T ss_pred CeEEEEEe-cChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcc-cHHHHHHHHHHHHHhhhhheEEEEEE
Confidence 34566655 3332 345554444444443 34578876 566655 999999999998643 455667
Q ss_pred cCcccCCccCCC----------CcceEEec--------CCHHHHHHHHHHhcCeeEEc-----cCCCCcHHHHHHHHHHH
Q 027857 75 PKALMPLEISGE----------TVGEVRTV--------SDMHERKAAMAQEAEAFIAL-----PGGYGTMEELLEMITWS 131 (217)
Q Consensus 75 P~~~~~~e~~~~----------~~~~~i~~--------~~m~~Rk~~~~~~sda~Ivl-----pGG~GTL~El~e~~t~~ 131 (217)
|-.-....+... ..+.++.+ ..|..|++.|+++||.+|++ +||....-+...-...
T Consensus 79 Pf~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~~- 157 (177)
T PF06908_consen 79 PFENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQE- 157 (177)
T ss_dssp SSB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHHH-
T ss_pred cccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHhh-
Confidence 754333222110 01223322 24579999999999998887 2333222222222211
Q ss_pred hcCCCCCcEEEEe
Q 027857 132 QLGIHKKPVGLLN 144 (217)
Q Consensus 132 qlg~~~kPiilln 144 (217)
.++.||.+++
T Consensus 158 ---~~~y~i~~I~ 167 (177)
T PF06908_consen 158 ---QKGYPIDLID 167 (177)
T ss_dssp ---HH---EEEE-
T ss_pred ---ccCCeEEEec
Confidence 2467888875
No 11
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=95.38 E-value=0.036 Score=42.11 Aligned_cols=46 Identities=35% Similarity=0.328 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhcCeeEEccCC----CCcHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 95 SDMHERKAAMAQEAEAFIALPGG----YGTMEELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 95 ~~m~~Rk~~~~~~sda~IvlpGG----~GTL~El~e~~t~~qlg~~~kPiilln~~ 146 (217)
....+|....++.||++|+.-.+ .||.-|+..+..+ +|||+++..+
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d 98 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcC
Confidence 34578888899999999986554 9999999999876 8999999764
No 12
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.29 E-value=1.1 Score=47.37 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=90.5
Q ss_pred eEEEEcCCCCCC-ChHHHHHHHH-HHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCC-----eE--EEEecCcccC-Cc
Q 027857 13 RVCVFCGSHSGN-RRVFSDAALE-LGNELVRRKINLVYGGGSVGLMGLISQTVYAGGC-----HV--LGIIPKALMP-LE 82 (217)
Q Consensus 13 ~I~Vfggs~~~~-~~~~~~~A~~-lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG-----~v--iGV~P~~~~~-~e 82 (217)
.|.|-||...-. .+.+.+.-++ |-+..-.-|-=|+|||-.+|+|.-+.+++.+++- ++ |||-|=.... ++
T Consensus 120 vISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr~ 199 (1381)
T KOG3614|consen 120 VISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNRD 199 (1381)
T ss_pred EEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeechh
Confidence 699999876533 3455433333 3333233699999999999999999999998642 33 5654422111 10
Q ss_pred ---------------cC-------CCCcceEEecC---------CHHHHHHH--HHHh----cC-------eeEEccCCC
Q 027857 83 ---------------IS-------GETVGEVRTVS---------DMHERKAA--MAQE----AE-------AFIALPGGY 118 (217)
Q Consensus 83 ---------------~~-------~~~~~~~i~~~---------~m~~Rk~~--~~~~----sd-------a~IvlpGG~ 118 (217)
.+ ++..+..+.++ ...-|+++ -+.. +. ..+++.||.
T Consensus 200 ~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg~ 279 (1381)
T KOG3614|consen 200 DLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGGP 279 (1381)
T ss_pred hhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCCc
Confidence 00 11112233322 11233321 0000 11 467889999
Q ss_pred CcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHH-hHHhcCCCCcc
Q 027857 119 GTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFD-NGVQEGFIKPS 168 (217)
Q Consensus 119 GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~-~~~~~gfi~~~ 168 (217)
+|+.=+.+..+. ..+.|++++...|=-.+++.++- .....|.++..
T Consensus 280 nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~ 326 (1381)
T KOG3614|consen 280 NTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDA 326 (1381)
T ss_pred hHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHH
Confidence 999988877764 34669999998888888888875 44455665544
No 13
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=93.36 E-value=4.4 Score=35.49 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcC--CHH
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAP--SAK 180 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~--d~e 180 (217)
-++..||++|. ++|..|+-| ++.. ++|+|..+..+.-.......+.+.+. ....+.-.. |++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~E---a~~~------g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAE---LAAA------GVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHH---HHHc------CCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 46788998886 444445544 4443 89999986543211111001111111 112222233 488
Q ss_pred HHHHHHHhhc
Q 027857 181 ELLEKMEQYT 190 (217)
Q Consensus 181 e~~~~l~~~~ 190 (217)
++.+.|.+..
T Consensus 310 ~l~~~i~~ll 319 (348)
T TIGR01133 310 KLLEALLKLL 319 (348)
T ss_pred HHHHHHHHHH
Confidence 8888887665
No 14
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=93.29 E-value=2.5 Score=36.85 Aligned_cols=122 Identities=21% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCCeEEEcCCCcCHHHHHHHHHHHcCC-eEEEEecCcccCCccCCCCcceEEecCCHH-HHHHHHHHhcCeeEEccCCCC
Q 027857 42 RKINLVYGGGSVGLMGLISQTVYAGGC-HVLGIIPKALMPLEISGETVGEVRTVSDMH-ERKAAMAQEAEAFIALPGGYG 119 (217)
Q Consensus 42 ~g~~lv~GGg~~GlM~a~~~gA~~~GG-~viGV~P~~~~~~e~~~~~~~~~i~~~~m~-~Rk~~~~~~sda~IvlpGG~G 119 (217)
.++.+||=||. |.- .+.+.+.+..+ .++-+-+.. . +.....+ ....+. ..-.-++..||++|.- ||++
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~--~-~~~~~ni----~~~~~~~~~~~~~m~~ad~vIs~-~G~~ 261 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNA--A-DPRPGNI----HVRPFSTPDFAELMAAADLVISK-GGYT 261 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCc--c-cccCCCE----EEeecChHHHHHHHHhCCEEEEC-CCHH
Confidence 56677776666 665 55566666554 333332221 1 1111111 122221 2233356889977766 7899
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEE-cCCHHHHHHHHHh
Q 027857 120 TMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIIS-APSAKELLEKMEQ 188 (217)
Q Consensus 120 TL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~-~~d~ee~~~~l~~ 188 (217)
|+.|.. . .+||++++-..++++.... .+.+.+.|... .+.. .-+++.+-+.|++
T Consensus 262 t~~Ea~---~------~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~-----~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 262 TISEAL---A------LGKPALVIPRPGQDEQEYN-ARKLEELGLGI-----VLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHH---H------cCCCEEEEeCCCCchHHHH-HHHHHHCCCeE-----EcccccCCHHHHHHHHhc
Confidence 988765 2 3899999977667766543 23444444421 1111 1277888887764
No 15
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=92.70 E-value=2.7 Score=38.10 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=40.6
Q ss_pred HHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCH
Q 027857 100 RKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSA 179 (217)
Q Consensus 100 Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 179 (217)
.-..++..||++|.-+| .+|+.| ++.. ++|+|+.+.-.- ...-+ .+.+.+.|. -....|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~E---Ama~------g~PvI~~~~~pg-qe~gn-~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAE---ALIR------GLPIILNGYIPG-QEEGN-VPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHH---HHHc------CCCEEEecCCCc-cchhh-HHHHHhCCc--------eeecCCH
Confidence 34456799999887555 468655 4543 899999873110 00000 122222222 1234889
Q ss_pred HHHHHHHHhhc
Q 027857 180 KELLEKMEQYT 190 (217)
Q Consensus 180 ee~~~~l~~~~ 190 (217)
+++.+.+.+..
T Consensus 335 ~~la~~i~~ll 345 (382)
T PLN02605 335 KEIARIVAEWF 345 (382)
T ss_pred HHHHHHHHHHH
Confidence 98888887664
No 16
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.58 E-value=1.2 Score=35.51 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCeeEEccCC-CCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEc
Q 027857 98 HERKAAMAQEAEAFIALPGG-YGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISA 176 (217)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG-~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 176 (217)
..|.+.+++.||.+|+.-|- +=--+-.|.+-... -.+||+|++.....--+|.+. +.....++
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~---AlgKplI~lh~~~~~HpLKEv-------------da~A~a~~ 126 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAA---ALGKPLITLHPEELHHPLKEV-------------DAAALAVA 126 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-------------hHhhHhhh
Confidence 57888999999999997662 22222222221110 138999999876554455541 22334678
Q ss_pred CCHHHHHHHHH
Q 027857 177 PSAKELLEKME 187 (217)
Q Consensus 177 ~d~ee~~~~l~ 187 (217)
++|+++++.|+
T Consensus 127 et~~Qvv~iL~ 137 (141)
T PF11071_consen 127 ETPEQVVEILR 137 (141)
T ss_pred CCHHHHHHHHH
Confidence 99999999875
No 17
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=92.11 E-value=1.7 Score=30.79 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=43.4
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecC
Q 027857 13 RVCVFCGSHSGNRRVFSDAALELGNELVRR-KINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPK 76 (217)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~La~~-g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~ 76 (217)
+|.| ||++.-.|... .-..|-+.+++. ...||+||.+.|+...+.+=|.+.|-.++-+-|+
T Consensus 5 rVli-~GgR~~~D~~~--i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 5 RVLI-TGGRDWTDHEL--IWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred EEEE-EECCccccHHH--HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 4554 55665444333 344577777775 6778999995599999999999998777776554
No 18
>PRK10565 putative carbohydrate kinase; Provisional
Probab=91.91 E-value=0.74 Score=44.27 Aligned_cols=126 Identities=18% Similarity=0.176 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCcCHHHH---HHHHHHHcC-CeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCC
Q 027857 42 RKINLVYGGGSVGLMGL---ISQTVYAGG-CHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGG 117 (217)
Q Consensus 42 ~g~~lv~GGg~~GlM~a---~~~gA~~~G-G~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG 117 (217)
+|..+|-||.. +.++| ++++|+..| |.|.=+.|....+ .......++++.+...+.-.-+...+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 68999999976 66665 567777776 4555555543211 1111222444332111212223467898887776
Q ss_pred CCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHHHHHH
Q 027857 118 YGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKM 186 (217)
Q Consensus 118 ~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l 186 (217)
.|+-++...++... ...++|+ +++.++ +.++..-. . . .....+..++.|+...+
T Consensus 330 lg~~~~~~~~~~~~--~~~~~P~-VLDAda-----L~ll~~~~-~---~---~~~~VLTPh~gE~~rL~ 383 (508)
T PRK10565 330 LGQQEWGKKALQKV--ENFRKPM-LWDADA-----LNLLAINP-D---K---RHNRVITPHPGEAARLL 383 (508)
T ss_pred CCCCHHHHHHHHHH--HhcCCCE-EEEchH-----HHHHhhCc-c---c---cCCeEECCCHHHHHHHh
Confidence 77766554444222 2346787 557665 23332110 0 0 11346677777776655
No 19
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=91.82 E-value=10 Score=34.84 Aligned_cols=81 Identities=19% Similarity=0.078 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcc--hHHHHHHHhHHhcCCCCcccccc
Q 027857 95 SDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYY--NSLLALFDNGVQEGFIKPSARQI 172 (217)
Q Consensus 95 ~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~--~~l~~~l~~~~~~gfi~~~~~~~ 172 (217)
..|........+.||.+|.=+ |..|+.|++ + .++|.|++-.. ++ ++=..-.+.+.+.|.- ..
T Consensus 240 ~~f~~dm~~~~~~ADLvIsRa-Ga~Ti~E~~--a-------~g~P~IliP~p-~~~~~~Q~~NA~~l~~~gaa-----~~ 303 (357)
T COG0707 240 LPFIDDMAALLAAADLVISRA-GALTIAELL--A-------LGVPAILVPYP-PGADGHQEYNAKFLEKAGAA-----LV 303 (357)
T ss_pred eeHHhhHHHHHHhccEEEeCC-cccHHHHHH--H-------hCCCEEEeCCC-CCccchHHHHHHHHHhCCCE-----EE
Confidence 334444555678899666554 567999977 2 37999998543 44 2211112334444321 11
Q ss_pred EEEcC-CHHHHHHHHHhhcC
Q 027857 173 IISAP-SAKELLEKMEQYTP 191 (217)
Q Consensus 173 i~~~~-d~ee~~~~l~~~~~ 191 (217)
+.-.+ +++++.+.|.+...
T Consensus 304 i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 304 IRQSELTPEKLAELILRLLS 323 (357)
T ss_pred eccccCCHHHHHHHHHHHhc
Confidence 11112 46777777766543
No 20
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=90.75 E-value=10 Score=34.03 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=43.8
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCc-chHHHHHHHhHHhcCCCCcccc
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGY-YNSLLALFDNGVQEGFIKPSAR 170 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf-~~~l~~~l~~~~~~gfi~~~~~ 170 (217)
|+..+|++|+---.+.-..|.. + .+||+.++..++| -..+.-|++++++++..+.-..
T Consensus 241 ~La~Adyii~TaDSinM~sEAa---s------TgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~ 299 (329)
T COG3660 241 MLAAADYIISTADSINMCSEAA---S------TGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEG 299 (329)
T ss_pred HHhhcceEEEecchhhhhHHHh---c------cCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCc
Confidence 6788999999888776666643 2 3899999988888 6677778888887776554444
No 21
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=90.42 E-value=2.4 Score=33.95 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCeeEEccCC-CCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEc
Q 027857 98 HERKAAMAQEAEAFIALPGG-YGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISA 176 (217)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG-~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 176 (217)
..|-+.+++.||.+|+.-|- +=--+-.|.+-... -.+||+|++.....--+|.+. +.....++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKEv-------------daaA~ava 129 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKEV-------------DNKAQAVV 129 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-------------hHHHHHHh
Confidence 57888899999999997662 22222223221110 138999999876554455441 22334568
Q ss_pred CCHHHHHHHHH
Q 027857 177 PSAKELLEKME 187 (217)
Q Consensus 177 ~d~ee~~~~l~ 187 (217)
++|+++++.|+
T Consensus 130 etp~Qvv~iL~ 140 (144)
T TIGR03646 130 ETPEQAIETLK 140 (144)
T ss_pred cCHHHHHHHHH
Confidence 99999999875
No 22
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=89.00 E-value=8.4 Score=35.19 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 99 ERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
++-..++..||++|.-|||. |+ +|++.. ++|+++.+.
T Consensus 265 ~~~~~~~~~aDl~I~k~gg~-tl---~EA~a~------G~PvI~~~~ 301 (391)
T PRK13608 265 KHMNEWMASSQLMITKPGGI-TI---SEGLAR------CIPMIFLNP 301 (391)
T ss_pred chHHHHHHhhhEEEeCCchH-HH---HHHHHh------CCCEEECCC
Confidence 34455789999998877764 64 445554 899999864
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=88.74 E-value=10 Score=34.35 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=38.4
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEE-EcCCHHHH
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIII-SAPSAKEL 182 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~-~~~d~ee~ 182 (217)
++..||+ +|--||.||+.|.. . +++|++++-.. .+.. .+.+.+.+.|.-. .+. -.-+++++
T Consensus 288 ll~~~~~-~I~hgG~~t~~Eal---~------~G~P~v~~p~~--~dq~-~~a~~l~~~g~g~-----~l~~~~~~~~~l 349 (392)
T TIGR01426 288 ILKKADA-FITHGGMNSTMEAL---F------NGVPMVAVPQG--ADQP-MTARRIAELGLGR-----HLPPEEVTAEKL 349 (392)
T ss_pred HHhhCCE-EEECCCchHHHHHH---H------hCCCEEecCCc--ccHH-HHHHHHHHCCCEE-----EeccccCCHHHH
Confidence 4578885 45688899987755 2 48999998532 2222 2233444444210 111 12256777
Q ss_pred HHHHHhhc
Q 027857 183 LEKMEQYT 190 (217)
Q Consensus 183 ~~~l~~~~ 190 (217)
.+.+.+..
T Consensus 350 ~~ai~~~l 357 (392)
T TIGR01426 350 REAVLAVL 357 (392)
T ss_pred HHHHHHHh
Confidence 77676554
No 24
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=88.04 E-value=18 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=22.1
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEE
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLL 143 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiill 143 (217)
.++..||++|. -||.+|+.|+. ..++|.+++
T Consensus 248 ~~~~~adlvIs-r~G~~t~~E~~---------~~g~P~I~i 278 (352)
T PRK12446 248 DILAITDFVIS-RAGSNAIFEFL---------TLQKPMLLI 278 (352)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---------HcCCCEEEE
Confidence 36789995555 45567877765 248999998
No 25
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.71 E-value=18 Score=31.56 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCc-chHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 99 ERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGY-YNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf-~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
..-..+...||++|. ++|..| +.|+++. ++|++.....+. .+.-....+.+.+.| ...+.-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t---~~Eam~~------G~Pvv~~~~~~~~~~~~~~~~~~l~~~g------~g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGAST---VAELAAL------GLPAILIPLPYAADDHQTANARALVKAG------AAVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhH---HHHHHHh------CCCEEEeecCCCCCCcHHHhHHHHHhCC------CEEEEecC
Confidence 334456789998885 445456 4455654 899998754321 111000011222222 12222222
Q ss_pred --CHHHHHHHHHhhc
Q 027857 178 --SAKELLEKMEQYT 190 (217)
Q Consensus 178 --d~ee~~~~l~~~~ 190 (217)
|++++.+.|.+..
T Consensus 308 ~~~~~~l~~~i~~ll 322 (350)
T cd03785 308 ELTPERLAAALLELL 322 (350)
T ss_pred CCCHHHHHHHHHHHh
Confidence 7899888887664
No 26
>PRK13660 hypothetical protein; Provisional
Probab=87.57 E-value=4.6 Score=33.82 Aligned_cols=108 Identities=10% Similarity=0.064 Sum_probs=59.9
Q ss_pred HHHHHHHHHCCCeE-EEcCCCcCHHHHHHHHHHHcC-----CeEEEEecCcccCCccCC----------CCcceEEec--
Q 027857 33 LELGNELVRRKINL-VYGGGSVGLMGLISQTVYAGG-----CHVLGIIPKALMPLEISG----------ETVGEVRTV-- 94 (217)
Q Consensus 33 ~~lG~~La~~g~~l-v~GGg~~GlM~a~~~gA~~~G-----G~viGV~P~~~~~~e~~~----------~~~~~~i~~-- 94 (217)
++|-+.+ +.|+.- ++||. .|+---+++-|++.. -+.+-++|-.-....+.. ...+.++.+
T Consensus 33 ~~l~~~~-e~G~~wfi~gga-lG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~ 110 (182)
T PRK13660 33 RKLIALL-EEGLEWVIISGQ-LGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISK 110 (182)
T ss_pred HHHHHHH-HCCCCEEEECCc-chHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecC
Confidence 3444444 467765 55554 599999999999863 345556674433222111 011222221
Q ss_pred ------CCHHHHHHHHHHhcCeeEEccCC---CCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 95 ------SDMHERKAAMAQEAEAFIALPGG---YGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 95 ------~~m~~Rk~~~~~~sda~IvlpGG---~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
..|..|++.|+++||++|++=-| .||--=+- ....+-..++.||.+++
T Consensus 111 ~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~--~A~k~~~~~~y~i~~I~ 167 (182)
T PRK13660 111 RPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYE--AAKKKQEKEDYPLDLIT 167 (182)
T ss_pred CCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHH--HHHHhhhccCceEEEeC
Confidence 13789999999999998886211 23322111 11111124578888884
No 27
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=86.28 E-value=7.3 Score=34.76 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=21.7
Q ss_pred HHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEE
Q 027857 102 AAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLL 143 (217)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiill 143 (217)
..+...||.+|. ++|..|+ |. +.+ ++|+|+.
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea---~a~------G~PvI~~ 286 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-EL---ALL------KVPMVVG 286 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HH---HHh------CCCEEEE
Confidence 446788997776 6677776 54 333 8999875
No 28
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=84.89 E-value=6.8 Score=32.59 Aligned_cols=57 Identities=28% Similarity=0.235 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCeeEEc--cCC----CCcHHHHHHHHHHHhcCCCCCcEEEEeCC--CcchHHHHHHHhHH
Q 027857 98 HERKAAMAQEAEAFIAL--PGG----YGTMEELLEMITWSQLGIHKKPVGLLNVD--GYYNSLLALFDNGV 160 (217)
Q Consensus 98 ~~Rk~~~~~~sda~Ivl--pGG----~GTL~El~e~~t~~qlg~~~kPiilln~~--gf~~~l~~~l~~~~ 160 (217)
.+=...+++.||++|+. |=- .||.-|+-.++.+ +||++.+..+ .+...+...+....
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d~~~~~~r~~~~~~~~l 123 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKDAANYASRLNAHLGEVL 123 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeecccchhhHHHHhHHHHh
Confidence 34455578999999886 344 8999999999987 9999988653 23444444443333
No 29
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=84.41 E-value=12 Score=33.59 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=40.1
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHH
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKEL 182 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 182 (217)
.+...+|++| --||.||+.|.. .+++|++++-. +.|.. .+.+.+.+.|.-..-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---------~~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---------RAGVPQLVVPF--FGDQP-FWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---------HcCCCEEeeCC--CCCcH-HHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 3467799776 667789988765 24899999843 23322 2234555555321111111 266776
Q ss_pred HHHHHhhc
Q 027857 183 LEKMEQYT 190 (217)
Q Consensus 183 ~~~l~~~~ 190 (217)
.+.+++..
T Consensus 363 ~~al~~~l 370 (401)
T cd03784 363 AAALRRLL 370 (401)
T ss_pred HHHHHHHh
Confidence 66665543
No 30
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=84.13 E-value=30 Score=31.70 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=40.1
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHH-hHHhcCCC-------Ccc-ccccEE
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFD-NGVQEGFI-------KPS-ARQIII 174 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~-~~~~~gfi-------~~~-~~~~i~ 174 (217)
.+..||++|.-. |..|+ |++ . .++|+|+...-..+. .++. .+++-.++ +.. ..+++.
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~---a------~G~P~Vv~yk~~pl~---~~~~~~~~~~~~~~~~nil~~~~~~pel~q 329 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAA---L------IKTPMVVGYRMKPLT---FLIARRLVKTDYISLPNILANRLLVPELLQ 329 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHH---H------cCCCEEEEEcCCHHH---HHHHHHHHcCCeeeccHHhcCCccchhhcC
Confidence 568899776655 55676 544 3 389998864332333 2232 22221221 111 123344
Q ss_pred EcCCHHHHHHHHHhhcCC
Q 027857 175 SAPSAKELLEKMEQYTPA 192 (217)
Q Consensus 175 ~~~d~ee~~~~l~~~~~~ 192 (217)
-.-+|+.+.+.+.+....
T Consensus 330 ~~~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 330 EECTPHPLAIALLLLLEN 347 (385)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 445788888888776533
No 31
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=82.13 E-value=37 Score=30.35 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=68.2
Q ss_pred HCCCeEEEcCCC--cCHHHHHHHHHHHcCC-eEEEEecCcccCCccCCCCcceEEecC--CHH-HHHHHHHHhcCeeEEc
Q 027857 41 RRKINLVYGGGS--VGLMGLISQTVYAGGC-HVLGIIPKALMPLEISGETVGEVRTVS--DMH-ERKAAMAQEAEAFIAL 114 (217)
Q Consensus 41 ~~g~~lv~GGg~--~GlM~a~~~gA~~~GG-~viGV~P~~~~~~e~~~~~~~~~i~~~--~m~-~Rk~~~~~~sda~Ivl 114 (217)
++|..+|-||.. +|.-..++.+|+.+|- .|.=.+|...... ......++++.. +.. ..+..+.+..|++++=
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~--~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviG 108 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASA--LKSYLPELMVIEVEGKKLLEERELVERADAVVIG 108 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhh--HhhcCcceeEeecccchhhHHhhhhccCCEEEEC
Confidence 368888888873 5777778888888874 3333344421100 011112333322 222 2233567888876654
Q ss_pred cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHHHHHHH
Q 027857 115 PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKME 187 (217)
Q Consensus 115 pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~ 187 (217)
-|.|.-+|..+++...-.... +|+++ +-++.+ .+. ...... ....++++..+-|.-..+.
T Consensus 109 -pGlG~~~~~~~~~~~~l~~~~-~p~Vi-DADaL~-----~la---~~~~~~--~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 109 -PGLGRDAEGQEALKELLSSDL-KPLVL-DADALN-----LLA---ELPDLL--DERKVVLTPHPGEFARLLG 168 (284)
T ss_pred -CCCCCCHHHHHHHHHHHhccC-CCEEE-eCcHHH-----HHH---hCcccc--cCCcEEECCCHHHHHHhcC
Confidence 468888877766543222222 88876 444321 111 111111 1112677777777666553
No 32
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=81.64 E-value=21 Score=31.27 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 99 ERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
..-..++..||.+|. .|| +|+-|+. .. ++|.+++-.
T Consensus 233 ~~m~~lm~~aDl~Is-~~G-~T~~E~~---a~------g~P~i~i~~ 268 (279)
T TIGR03590 233 ENMAELMNEADLAIG-AAG-STSWERC---CL------GLPSLAICL 268 (279)
T ss_pred HHHHHHHHHCCEEEE-CCc-hHHHHHH---Hc------CCCEEEEEe
Confidence 344456789998888 566 8877655 33 799998853
No 33
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=81.02 E-value=39 Score=29.82 Aligned_cols=104 Identities=15% Similarity=0.054 Sum_probs=53.4
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCC-eEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcH
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGC-HVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTM 121 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG-~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL 121 (217)
.+.+|+||+. | .+.+.+...+... .++---++.. ..... ..+.+.....+.-.-++..||++|.- ||.+|+
T Consensus 189 ~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~-~~~~~----~~v~~~~~~~~~~~~~l~~ad~vI~~-~G~~t~ 260 (321)
T TIGR00661 189 DYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVA-KNSYN----ENVEIRRITTDNFKELIKNAELVITH-GGFSLI 260 (321)
T ss_pred CcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCC-ccccC----CCEEEEECChHHHHHHHHhCCEEEEC-CChHHH
Confidence 5678998654 5 5666555444443 2221112211 11111 12222221123444567889977665 677887
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCC
Q 027857 122 EELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGF 164 (217)
Q Consensus 122 ~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gf 164 (217)
.|. +. +++|++++...+.++.... .+.+.+.|.
T Consensus 261 ~Ea---~~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 261 SEA---LS------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHH---HH------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 664 33 3899999876655554433 334445453
No 34
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=80.49 E-value=44 Score=30.11 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccc--c-----EEEc
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQ--I-----IISA 176 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~--~-----i~~~ 176 (217)
+...||+++|-+-..-= ++|+++- +|||.++...+--+.+..+++.|.++|.+..-... . ..-.
T Consensus 225 ~La~ad~i~VT~DSvSM---vsEA~~t------G~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl 295 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSM---VSEAAAT------GKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPL 295 (311)
T ss_pred HHHhCCEEEEcCccHHH---HHHHHHc------CCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCc
Confidence 67889999998876644 4445543 89999998776555677788899999988654433 2 2234
Q ss_pred CCHHHHHHHHHhh
Q 027857 177 PSAKELLEKMEQY 189 (217)
Q Consensus 177 ~d~ee~~~~l~~~ 189 (217)
++.+.+.+.|.+.
T Consensus 296 ~et~r~A~~i~~r 308 (311)
T PF06258_consen 296 DETDRVAAEIRER 308 (311)
T ss_pred cHHHHHHHHHHHH
Confidence 5555666666543
No 35
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=78.66 E-value=1.8 Score=34.36 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=21.4
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
.+++.|| +||--||.||+.|+. . .++|.|++-.
T Consensus 68 ~~m~~aD-lvIs~aG~~Ti~E~l---~------~g~P~I~ip~ 100 (167)
T PF04101_consen 68 ELMAAAD-LVISHAGAGTIAEAL---A------LGKPAIVIPL 100 (167)
T ss_dssp HHHHHHS-EEEECS-CHHHHHHH---H------CT--EEEE--
T ss_pred HHHHHcC-EEEeCCCccHHHHHH---H------cCCCeeccCC
Confidence 4678899 677778899988765 2 3899988743
No 36
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=76.18 E-value=7.7 Score=31.35 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 30 DAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 30 ~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
.-|+-+.+.|+..|+.++++|.. --.+.+++.|++....+|||
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgv 69 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGV 69 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEE
Confidence 56677889999999999999988 67788889999999999999
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=72.87 E-value=70 Score=28.57 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCC
Q 027857 99 ERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS 178 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 178 (217)
+.-..++..||++|.-+|| .|+ +|++.. ++|+|+.+..+-.+. +-.+.+.+.|+ .....|
T Consensus 265 ~~~~~l~~~aD~~v~~~gg-~t~---~EA~a~------g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~~~~ 324 (380)
T PRK13609 265 ENIDELFRVTSCMITKPGG-ITL---SEAAAL------GVPVILYKPVPGQEK--ENAMYFERKGA--------AVVIRD 324 (380)
T ss_pred hhHHHHHHhccEEEeCCCc-hHH---HHHHHh------CCCEEECCCCCCcch--HHHHHHHhCCc--------EEEECC
Confidence 3344567899988865554 354 445554 899988764222111 11112223332 334578
Q ss_pred HHHHHHHHHhhc
Q 027857 179 AKELLEKMEQYT 190 (217)
Q Consensus 179 ~ee~~~~l~~~~ 190 (217)
++++.+.|.+..
T Consensus 325 ~~~l~~~i~~ll 336 (380)
T PRK13609 325 DEEVFAKTEALL 336 (380)
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
No 38
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=71.71 E-value=7.8 Score=34.65 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHCCC-eEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCc
Q 027857 30 DAALELGNELVRRKI-NLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKA 77 (217)
Q Consensus 30 ~~A~~lG~~La~~g~-~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~ 77 (217)
..|.++++.++..++ .|+.+||. |...+++.|....+...+||+|.-
T Consensus 45 g~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 45 GDAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 356677777777766 45777887 999999999999998889999854
No 39
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=71.19 E-value=29 Score=30.11 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=24.1
Q ss_pred HHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 027857 102 AAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDG 147 (217)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~g 147 (217)
..+...+|++++ .+|.++-+.+.++..... .+++|+ +++.+|
T Consensus 87 ~~~~~~~davvi-g~Gl~~~~~~~~l~~~~~--~~~~pv-VlDa~g 128 (272)
T TIGR00196 87 EELLERYDVVVI-GPGLGQDPSFKKAVEEVL--ELDKPV-VLDADA 128 (272)
T ss_pred HhhhccCCEEEE-cCCCCCCHHHHHHHHHHH--hcCCCE-EEEhHH
Confidence 344566776665 666998666444443222 347786 556654
No 40
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=68.33 E-value=8.7 Score=39.67 Aligned_cols=143 Identities=18% Similarity=0.168 Sum_probs=79.1
Q ss_pred HHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHc-----------CCeEEEEecCcccCCccCCCCcceEEecCCHHHHH
Q 027857 33 LELGNELVRRKINLVYGGGSVGLMGLISQTVYAG-----------GCHVLGIIPKALMPLEISGETVGEVRTVSDMHERK 101 (217)
Q Consensus 33 ~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~-----------GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk 101 (217)
.+|+|.|.-+-+.||.||| |.=++++-|++.| ||.+||-.-..++..|... ..+..|.
T Consensus 829 sRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~e~d~---------~~v~~ra 897 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAEERDL---------VPVFGRA 897 (1158)
T ss_pred HHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhccCcc---------hHHHHHH
Confidence 3688899999999999987 6888888888863 7777876555666544221 1244454
Q ss_pred HHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC-CCcchHHHHHHHhHHhcCCCCccccccEEEcCCHH
Q 027857 102 AAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV-DGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAK 180 (217)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~-~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~e 180 (217)
+.+... .-.+-.+..-+ .-|+.-+-+ -.|=..+. ++..+..|..-...++.++.|.-
T Consensus 898 k~f~~~----------mssiw~~llDL--------TyP~tsmftGh~FNrsI~----~~Fgd~~IEDlWi~yfciTTdIt 955 (1158)
T KOG2968|consen 898 KKFAGK----------MSSIWRLLLDL--------TYPITSMFTGHEFNRSIH----STFGDVLIEDLWIPYFCITTDIT 955 (1158)
T ss_pred HHHHHH----------HHHHHHHHHhc--------cccchhccchhhhhhHHH----HHhcccchhhhhheeeecccccc
Confidence 444321 11222222223 346654322 22333333 44555555555667777777766
Q ss_pred HHHHHHHhhcCCCCCCCCCccccccccCCCcc
Q 027857 181 ELLEKMEQYTPAHEHVAPHESWQMEQLGDYPR 212 (217)
Q Consensus 181 e~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~ 212 (217)
.-...+-+.=. -|.+.+=+|.=-+|+|-
T Consensus 956 ~S~mriH~~G~----~WrYvRASMsLaGylPP 983 (1158)
T KOG2968|consen 956 SSEMRVHRNGS----LWRYVRASMSLAGYLPP 983 (1158)
T ss_pred hhhhhhhcCCc----hHHHHHhhccccccCCC
Confidence 54444432211 23444445666666663
No 41
>PRK11914 diacylglycerol kinase; Reviewed
Probab=68.30 E-value=62 Score=28.47 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=17.9
Q ss_pred eEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEE
Q 027857 111 FIALPGGYGTMEELLEMITWSQLGIHKKPVGLL 143 (217)
Q Consensus 111 ~IvlpGG~GTL~El~e~~t~~qlg~~~kPiill 143 (217)
.|+.-||=||++|+...+. ..+.|+.++
T Consensus 67 ~vvv~GGDGTi~evv~~l~-----~~~~~lgii 94 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLA-----GTDIPLGII 94 (306)
T ss_pred EEEEECCchHHHHHhHHhc-----cCCCcEEEE
Confidence 4566777888887776552 134667666
No 42
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=67.46 E-value=20 Score=29.51 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=31.2
Q ss_pred HhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEE-eCCCcchHHHHHHHhHHhcCCC
Q 027857 106 QEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLL-NVDGYYNSLLALFDNGVQEGFI 165 (217)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiill-n~~gf~~~l~~~l~~~~~~gfi 165 (217)
+.|| +|+=-+|.||.- +++.+ +||.+++ |.+=+=++=.++.+++.++|++
T Consensus 79 ~~Ad-lVIsHAGaGS~l---etL~l------~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 79 RSAD-LVISHAGAGSCL---ETLRL------GKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred hhcc-EEEecCCcchHH---HHHHc------CCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 4466 455568899954 45544 8998876 5432334555556678877764
No 43
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=66.83 E-value=11 Score=30.44 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=25.9
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
+-++|+|+|-|..+..+.| .+.+.|-++||.++=
T Consensus 15 ~~K~IAvVG~S~~P~r~sy-----~V~kyL~~~GY~ViP 48 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSY-----RVAKYLQQKGYRVIP 48 (140)
T ss_pred hCceEEEEecCCCCCccHH-----HHHHHHHHCCCEEEe
Confidence 3478999997776544444 688899999999963
No 44
>PRK14557 pyrH uridylate kinase; Provisional
Probab=66.81 E-value=70 Score=27.79 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=22.0
Q ss_pred ceEEE-EcCCCCCCCh---HHHHHHHHHHHHHH---HCC--CeEEEcCCC
Q 027857 12 KRVCV-FCGSHSGNRR---VFSDAALELGNELV---RRK--INLVYGGGS 52 (217)
Q Consensus 12 ~~I~V-fggs~~~~~~---~~~~~A~~lG~~La---~~g--~~lv~GGg~ 52 (217)
++|.| |||+....+. .-.+..+++.+.|+ +.| ..||.|||+
T Consensus 5 ~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn 54 (247)
T PRK14557 5 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGN 54 (247)
T ss_pred cEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcH
Confidence 34444 7777764321 11234555555555 445 467888864
No 45
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=65.00 E-value=1.1e+02 Score=27.83 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=45.4
Q ss_pred eEEecCCHHHHHHHHHHhcCeeEEcc---CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCC
Q 027857 90 EVRTVSDMHERKAAMAQEAEAFIALP---GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIK 166 (217)
Q Consensus 90 ~~i~~~~m~~Rk~~~~~~sda~Ivlp---GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~ 166 (217)
.+++.+++.+ ...+...||.+++.+ .|.|.- +.|++.. ++|||.-...+-+..+.+ .+.+.|
T Consensus 303 ~v~l~~~~~e-l~~~y~~aDi~~v~~S~~e~~g~~--~lEAma~------G~PVI~g~~~~~~~e~~~---~~~~~g--- 367 (425)
T PRK05749 303 DVLLGDTMGE-LGLLYAIADIAFVGGSLVKRGGHN--PLEPAAF------GVPVISGPHTFNFKEIFE---RLLQAG--- 367 (425)
T ss_pred cEEEEecHHH-HHHHHHhCCEEEECCCcCCCCCCC--HHHHHHh------CCCEEECCCccCHHHHHH---HHHHCC---
Confidence 3555555543 345568999876642 123332 6777776 999997432111223322 332223
Q ss_pred ccccccEEEcCCHHHHHHHHHhhc
Q 027857 167 PSARQIIISAPSAKELLEKMEQYT 190 (217)
Q Consensus 167 ~~~~~~i~~~~d~ee~~~~l~~~~ 190 (217)
.+...+|++++.+.|....
T Consensus 368 -----~~~~~~d~~~La~~l~~ll 386 (425)
T PRK05749 368 -----AAIQVEDAEDLAKAVTYLL 386 (425)
T ss_pred -----CeEEECCHHHHHHHHHHHh
Confidence 3444678888888887654
No 46
>PRK13337 putative lipid kinase; Reviewed
Probab=63.62 E-value=19 Score=31.81 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=31.6
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcCHHHHHHHHHHHcCC-eEEEEecCc
Q 027857 32 ALELGNELVRRKI-NLVYGGGSVGLMGLISQTVYAGGC-HVLGIIPKA 77 (217)
Q Consensus 32 A~~lG~~La~~g~-~lv~GGg~~GlM~a~~~gA~~~GG-~viGV~P~~ 77 (217)
|.++.+.++++++ .||..||. |-..++..+....+- ..+||+|.-
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECCc
Confidence 3445555555553 56777888 999999998876643 479999854
No 47
>PRK00861 putative lipid kinase; Reviewed
Probab=63.21 E-value=16 Score=32.13 Aligned_cols=44 Identities=27% Similarity=0.475 Sum_probs=32.3
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCc
Q 027857 32 ALELGNELVRRKI-NLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKA 77 (217)
Q Consensus 32 A~~lG~~La~~g~-~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~ 77 (217)
|.++.+..++.++ .||..||. |-..++..+.... +..+||+|.-
T Consensus 46 a~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~G 90 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPRG 90 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcCC
Confidence 3455655655654 56788888 9999999999765 4679999854
No 48
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=61.88 E-value=99 Score=26.73 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=59.8
Q ss_pred EEEcCCCcCHHHH---HHHHHHHcC-CeEEEEecCcccCCccCCCCcceEEecC-CH--HHHHHHHHHhcCeeEEccCCC
Q 027857 46 LVYGGGSVGLMGL---ISQTVYAGG-CHVLGIIPKALMPLEISGETVGEVRTVS-DM--HERKAAMAQEAEAFIALPGGY 118 (217)
Q Consensus 46 lv~GGg~~GlM~a---~~~gA~~~G-G~viGV~P~~~~~~e~~~~~~~~~i~~~-~m--~~Rk~~~~~~sda~IvlpGG~ 118 (217)
+|-||.. +..+| ++++|+..| |.|.=+.|....+. . .....++++.+ .. ...-....+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~-~-~~~~Pe~m~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPV-I-ASYSPEAMVSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHH-H-HHHTTTSEEEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHH-H-HhCCceeEEecccchhhhhhHhhhccCCEEEeecC-C
Confidence 5666655 55555 566677776 56666666543211 0 00111222221 11 1122334577898888776 5
Q ss_pred CcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHHHHHHHh
Q 027857 119 GTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKMEQ 188 (217)
Q Consensus 119 GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 188 (217)
|+-++..+++... -...+| ++++-+++| ++. ... ......++++..+-|+-+.+..
T Consensus 78 g~~~~~~~~~~~~--~~~~~p-~VlDADaL~-----~l~---~~~---~~~~~~~IlTPH~gE~~rL~~~ 133 (242)
T PF01256_consen 78 GRDEETEELLEEL--LESDKP-LVLDADALN-----LLA---ENP---KKRNAPVILTPHPGEFARLLGK 133 (242)
T ss_dssp SSSHHHHHHHHHH--HHHCST-EEEECHHHH-----CHH---HCC---CCSSSCEEEE-BHHHHHHHHTT
T ss_pred CCchhhHHHHHHH--Hhhcce-EEEehHHHH-----HHH---hcc---ccCCCCEEECCCHHHHHHHhCC
Confidence 6666644433211 123678 566765322 121 111 2344567888888888776644
No 49
>PRK13055 putative lipid kinase; Reviewed
Probab=61.81 E-value=20 Score=32.34 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcCHHHHHHHHHHHcC-CeEEEEecCc
Q 027857 32 ALELGNELVRRKI-NLVYGGGSVGLMGLISQTVYAGG-CHVLGIIPKA 77 (217)
Q Consensus 32 A~~lG~~La~~g~-~lv~GGg~~GlM~a~~~gA~~~G-G~viGV~P~~ 77 (217)
|.++.+..++.++ .||..||. |-+-+++.+....+ ...+||+|.-
T Consensus 48 a~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 48 AKNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECCC
Confidence 3445555555553 56677888 99999999988654 3569999853
No 50
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=61.10 E-value=61 Score=28.54 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHh-----cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEE
Q 027857 96 DMHERKAAMAQE-----AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVG 141 (217)
Q Consensus 96 ~m~~Rk~~~~~~-----sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPii 141 (217)
+-.+|.+-|.+. .||++..-||+|+.. +..-+.|.++..++|+++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~r-lL~~ld~~~~~~~pK~~i 95 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGANR-LLPYLDYDLIRANPKIFV 95 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHH-hhhhCCHHHHhhCCeEEE
Confidence 345666655543 689999999999965 666667766665555543
No 51
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=61.10 E-value=40 Score=29.71 Aligned_cols=45 Identities=27% Similarity=0.530 Sum_probs=28.8
Q ss_pred ccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHH-----HHHhHHhcC
Q 027857 114 LPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLA-----LFDNGVQEG 163 (217)
Q Consensus 114 lpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~-----~l~~~~~~g 163 (217)
|-.|. |++.+++.+.-.. ..++.|++++ +||+++.. |++.+.+.|
T Consensus 70 L~~g~-~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 70 LKQGI-NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred HHcCC-CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 44454 5777777765433 2467899887 48876655 677666654
No 52
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=60.55 E-value=45 Score=30.46 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=39.3
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHHH
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELL 183 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~ 183 (217)
+.-.||.+| ||.|||. .|+..+ +.|.|-+.. |.+-.+.++ +.+. ..++.+.|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA~L------GtPaIs~~~-g~~~~vd~~---L~~~--------Gll~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAALL------GTPAISCFP-GKLLAVDKY---LIEK--------GLLYHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHHHh------CCCEEEecC-CcchhHHHH---HHHC--------CCeEecCCHHHHH
Confidence 444566544 5666776 555555 889987643 233333333 3333 3468899999999
Q ss_pred HHHHhh
Q 027857 184 EKMEQY 189 (217)
Q Consensus 184 ~~l~~~ 189 (217)
+.+.+.
T Consensus 302 ~~v~~~ 307 (335)
T PF04007_consen 302 EYVRKN 307 (335)
T ss_pred HHHHHh
Confidence 988654
No 53
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=60.42 E-value=15 Score=28.08 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCC--eEEEcCCCcCHHHHHHHHHHHcCC---eEEEEecC
Q 027857 33 LELGNELVRRKI--NLVYGGGSVGLMGLISQTVYAGGC---HVLGIIPK 76 (217)
Q Consensus 33 ~~lG~~La~~g~--~lv~GGg~~GlM~a~~~gA~~~GG---~viGV~P~ 76 (217)
.++.+....... .||..||. |-.-.+..+....+. ..+|++|.
T Consensus 43 ~~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 43 EALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp HHHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-
T ss_pred HHHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecC
Confidence 345544444444 77888888 888888888888765 47999985
No 54
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=60.03 E-value=23 Score=31.08 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcCHHHHHHHHHHHcCC---eEEEEecCc
Q 027857 32 ALELGNELVRRKI-NLVYGGGSVGLMGLISQTVYAGGC---HVLGIIPKA 77 (217)
Q Consensus 32 A~~lG~~La~~g~-~lv~GGg~~GlM~a~~~gA~~~GG---~viGV~P~~ 77 (217)
|.++.+.+++.++ .||.-||. |-.-++..|....+- ..+||+|.-
T Consensus 41 a~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 41 AQRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcCC
Confidence 3455665555553 56677777 999999999986532 258999843
No 55
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=60.00 E-value=1.2e+02 Score=26.79 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=57.8
Q ss_pred HHHHHHHCC--CeEEEcCCCcCHHHH--HHHHHHH-cC--CeEEEEecCcccC--------CccCCCCc----ceEEecC
Q 027857 35 LGNELVRRK--INLVYGGGSVGLMGL--ISQTVYA-GG--CHVLGIIPKALMP--------LEISGETV----GEVRTVS 95 (217)
Q Consensus 35 lG~~La~~g--~~lv~GGg~~GlM~a--~~~gA~~-~G--G~viGV~P~~~~~--------~e~~~~~~----~~~i~~~ 95 (217)
.+=.+|+.| ..+|+||-+ |+-+- +.-.+.+ .| ..=+-|+|..-.. ..+.|+.+ +++...-
T Consensus 64 ~AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPw 142 (249)
T COG1010 64 EAIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPW 142 (249)
T ss_pred HHHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHhcCCcH
Confidence 344456554 567888887 88543 3333333 44 2335667754311 11112211 1111111
Q ss_pred CHHHHHHHHHHhcCeeEEc--cCCCC---cHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 96 DMHERKAAMAQEAEAFIAL--PGGYG---TMEELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 96 ~m~~Rk~~~~~~sda~Ivl--pGG~G---TL~El~e~~t~~qlg~~~kPiilln~~ 146 (217)
..=+++......+|.+|+| |=+-+ -+.+.++++ .+......||+|...-
T Consensus 143 e~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil--~~~r~~~tpVgivrna 196 (249)
T COG1010 143 EVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEIL--REHRSPDTPVGIVRNA 196 (249)
T ss_pred HHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHH--HHhcCCCCcEEEEecC
Confidence 1124444457889999987 66666 556666665 3444457899998643
No 56
>PRK13054 lipid kinase; Reviewed
Probab=59.84 E-value=24 Score=31.09 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcCHHHHHHHHHHHcC-C--eEEEEecCc
Q 027857 33 LELGNELVRRKI-NLVYGGGSVGLMGLISQTVYAGG-C--HVLGIIPKA 77 (217)
Q Consensus 33 ~~lG~~La~~g~-~lv~GGg~~GlM~a~~~gA~~~G-G--~viGV~P~~ 77 (217)
.++.+..++.++ .||..||. |-.-.++.+..... + ..+||+|.-
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 444554444444 56777888 98888888887642 2 369999854
No 57
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=58.68 E-value=1.4e+02 Score=27.98 Aligned_cols=81 Identities=14% Similarity=0.275 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC-CcchHHHHHHHhHHhcCCCCccccccEE
Q 027857 96 DMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD-GYYNSLLALFDNGVQEGFIKPSARQIII 174 (217)
Q Consensus 96 ~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~-gf~~~l~~~l~~~~~~gfi~~~~~~~i~ 174 (217)
.|..|-..++.-|+.+|.+ ||+.|.=| +++. +||-+++-.. +--+.++. .+++.+-|.++-=..+.+
T Consensus 283 ~f~~~~~~ll~gA~~vVSm-~GYNTvCe---ILs~------~k~aLivPr~~p~eEQliR-A~Rl~~LGL~dvL~pe~l- 350 (400)
T COG4671 283 EFRNDFESLLAGARLVVSM-GGYNTVCE---ILSF------GKPALIVPRAAPREEQLIR-AQRLEELGLVDVLLPENL- 350 (400)
T ss_pred EhhhhHHHHHHhhheeeec-ccchhhhH---HHhC------CCceEEeccCCCcHHHHHH-HHHHHhcCcceeeCcccC-
Confidence 3555666678888977766 67988554 4544 8998887432 11122222 135556566653333332
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027857 175 SAPSAKELLEKMEQYTP 191 (217)
Q Consensus 175 ~~~d~ee~~~~l~~~~~ 191 (217)
+++.+.+.|+...+
T Consensus 351 ---t~~~La~al~~~l~ 364 (400)
T COG4671 351 ---TPQNLADALKAALA 364 (400)
T ss_pred ---ChHHHHHHHHhccc
Confidence 36667777765543
No 58
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=58.61 E-value=24 Score=33.04 Aligned_cols=83 Identities=24% Similarity=0.403 Sum_probs=51.7
Q ss_pred CeEEEcCCCcCHHHHHHHHHHH--------------------cCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHH
Q 027857 44 INLVYGGGSVGLMGLISQTVYA--------------------GGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAA 103 (217)
Q Consensus 44 ~~lv~GGg~~GlM~a~~~gA~~--------------------~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~ 103 (217)
|.|.+|-|| |+.+-..+-+.+ .+|+++||.-..+.|.....-..+.-.+..+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdF------ 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDF------ 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecce------
Confidence 678899999 999888777766 36778888654444432111111111222333
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHH-HHHHhcC
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEM-ITWSQLG 134 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~-~t~~qlg 134 (217)
.-++.++||-.||+|-=.|+.-- |--..+|
T Consensus 214 -ef~A~aviv~SGGIGGnhelVRrnWP~eRlG 244 (552)
T COG3573 214 -EFSASAVIVASGGIGGNHELVRRNWPTERLG 244 (552)
T ss_pred -EEeeeeEEEecCCcCCCHHHHHhcCchhhcC
Confidence 23578999999999999987643 4334444
No 59
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=58.54 E-value=84 Score=26.53 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=43.4
Q ss_pred CCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEec---CCHHHHHHHHHHh---------cC
Q 027857 42 RKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTV---SDMHERKAAMAQE---------AE 109 (217)
Q Consensus 42 ~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~---~~m~~Rk~~~~~~---------sd 109 (217)
.|-.||||| . |..+.++-.+.++++..++-+ .+...|.+ +.-|++ +++-+..+...+. -|
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~si--Dl~eNe~A----d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvD 74 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSI--DLSENEQA----DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVD 74 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEE--eecccccc----cceEEecCCcchhHHHHHHHHHHHHhhcccccc
Confidence 467899976 5 888888888888888776653 22222222 222222 4555555544433 59
Q ss_pred eeEEccCCC
Q 027857 110 AFIALPGGY 118 (217)
Q Consensus 110 a~IvlpGG~ 118 (217)
+++++.||+
T Consensus 75 av~CVAGGW 83 (236)
T KOG4022|consen 75 AVFCVAGGW 83 (236)
T ss_pred eEEEeeccc
Confidence 999998876
No 60
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=58.52 E-value=13 Score=28.49 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=22.7
Q ss_pred eEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 111 FIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 111 ~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
+|+.-||=||+.|+...+--........|+.++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeC
Confidence 7778999999999987763211111125788873
No 61
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=58.23 E-value=64 Score=30.02 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=52.9
Q ss_pred HHHCCCeEEEcCCCcC----HHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEc
Q 027857 39 LVRRKINLVYGGGSVG----LMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIAL 114 (217)
Q Consensus 39 La~~g~~lv~GGg~~G----lM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~Ivl 114 (217)
.+.+....++=|.. + +-+.+.+.+.+.+.++|=-... . + ....+.....++.+..+ ...+...||+| |-
T Consensus 234 ~~d~~~vyvslGt~-~~~~~l~~~~~~a~~~l~~~vi~~~~~-~-~-~~~~~~p~n~~v~~~~p--~~~~l~~ad~v-I~ 306 (406)
T COG1819 234 PADRPIVYVSLGTV-GNAVELLAIVLEALADLDVRVIVSLGG-A-R-DTLVNVPDNVIVADYVP--QLELLPRADAV-IH 306 (406)
T ss_pred cCCCCeEEEEcCCc-ccHHHHHHHHHHHHhcCCcEEEEeccc-c-c-cccccCCCceEEecCCC--HHHHhhhcCEE-Ee
Confidence 34455655654544 6 4566667777778776655433 1 1 10111112234444443 23378889965 56
Q ss_pred cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 115 PGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 115 pGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
.||.||..|.. .+++|++++-.
T Consensus 307 hGG~gtt~eaL---------~~gvP~vv~P~ 328 (406)
T COG1819 307 HGGAGTTSEAL---------YAGVPLVVIPD 328 (406)
T ss_pred cCCcchHHHHH---------HcCCCEEEecC
Confidence 89999988755 24899999854
No 62
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=57.85 E-value=27 Score=31.81 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=35.9
Q ss_pred HhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC-----CCcchHHHHHHHh
Q 027857 106 QEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV-----DGYYNSLLALFDN 158 (217)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~-----~gf~~~l~~~l~~ 158 (217)
+..|+|||+=| .-||+|-+.++.++--+ +|||||.+. .--.|...+++..
T Consensus 76 ~~~dG~VVtHG-TDTme~TA~~Ls~~l~~--~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 76 DDYDGFVITHG-TDTMAYTAAALSFMLET--PKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred hcCCeEEEccC-CchHHHHHHHHHHHcCC--CCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 35899999875 89999999888764322 899999874 2245555665543
No 63
>PRK08105 flavodoxin; Provisional
Probab=57.48 E-value=21 Score=28.38 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=26.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
|++|+|+.+|..++.+ +.|++|++.|.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte---~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNAL---LVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCceE
Confidence 4679999989887443 567888888888887754
No 64
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=57.47 E-value=63 Score=27.42 Aligned_cols=41 Identities=27% Similarity=0.458 Sum_probs=23.1
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCc
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGY 148 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf 148 (217)
+....|++++ .+|+|+-+.+..+..... .++.|+ ++|.++.
T Consensus 74 ~~~~~d~v~i-g~gl~~~~~~~~i~~~~~--~~~~pv-VlDa~~~ 114 (254)
T cd01171 74 LLERADAVVI-GPGLGRDEEAAEILEKAL--AKDKPL-VLDADAL 114 (254)
T ss_pred hhccCCEEEE-ecCCCCCHHHHHHHHHHH--hcCCCE-EEEcHHH
Confidence 3456787665 556887554444443222 346786 4676643
No 65
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=56.82 E-value=57 Score=25.82 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=20.8
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 108 AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~ 146 (217)
.+++++.-=|++.-.++++++.. .... ||||+|...
T Consensus 55 t~~I~ly~E~~~d~~~f~~~~~~--a~~~-KPVv~lk~G 90 (138)
T PF13607_consen 55 TRVIVLYLEGIGDGRRFLEAARR--AARR-KPVVVLKAG 90 (138)
T ss_dssp --EEEEEES--S-HHHHHHHHHH--HCCC-S-EEEEE--
T ss_pred CCEEEEEccCCCCHHHHHHHHHH--HhcC-CCEEEEeCC
Confidence 55777777788888998887753 3333 999999764
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=55.95 E-value=1.4e+02 Score=26.09 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCC
Q 027857 99 ERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS 178 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 178 (217)
..-..+...||++|.=+| |..+|. +. .++|++.++..+-+. ...+.|. .+.+.+|
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea---~~------~g~PvI~~~~~~~~~-------~~~~~g~-------~~~~~~~ 323 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEA---SF------LGVPVLNLRDRTERP-------ETVESGT-------NVLVGTD 323 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhh---hh------cCCCEEeeCCCCccc-------hhhheee-------EEecCCC
Confidence 444556778998885555 444443 32 379999986432222 1122221 2333457
Q ss_pred HHHHHHHHHhhcCC
Q 027857 179 AKELLEKMEQYTPA 192 (217)
Q Consensus 179 ~ee~~~~l~~~~~~ 192 (217)
++++.+.+.+....
T Consensus 324 ~~~i~~~i~~ll~~ 337 (363)
T cd03786 324 PEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999888876543
No 67
>PRK09004 FMN-binding protein MioC; Provisional
Probab=55.79 E-value=20 Score=28.42 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=25.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
|++|.|+.+|..++.+ +.|++|.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae---~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAE---YVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHHcCCceE
Confidence 5679999999887443 567888888887877654
No 68
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=55.63 E-value=72 Score=27.28 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCeeEEcc----CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEE
Q 027857 99 ERKAAMAQEAEAFIALP----GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIII 174 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp----GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~ 174 (217)
+....+...||++|... .|+|.- +.|++.. ++|++..+..+..+.+.. ......+.
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~--~~Ea~~~------g~Pvi~~~~~~~~~~i~~------------~~~~g~~~ 314 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIV--LLEAMAF------GKPVISTEIGTGGSYVNL------------HGVTGLVV 314 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchH--HHHHHHc------CCCEEecCCCCchhHHhh------------CCCceEEe
Confidence 44556778899987642 455532 5666654 899998876544332211 01123344
Q ss_pred EcCCHHHHHHHHHhhc
Q 027857 175 SAPSAKELLEKMEQYT 190 (217)
Q Consensus 175 ~~~d~ee~~~~l~~~~ 190 (217)
-.+|++++.+.|.+..
T Consensus 315 ~~~d~~~~~~~i~~l~ 330 (357)
T cd03795 315 PPGDPAALAEAIRRLL 330 (357)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4578988888887654
No 69
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=55.11 E-value=80 Score=26.19 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHHHHhcCeeEEccC--CCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 100 RKAAMAQEAEAFIALPG--GYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 100 Rk~~~~~~sda~IvlpG--G~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
....+...||++|.-.. |+|+- +.|++.. ++|++..+..+....+.. ......+.-.+
T Consensus 245 ~~~~~~~~ad~~i~ps~~e~~~~~--~~Ea~a~------G~Pvi~~~~~~~~~~~~~------------~~~~g~~~~~~ 304 (348)
T cd03820 245 NIEEYYAKASIFVLTSRFEGFPMV--LLEAMAF------GLPVISFDCPTGPSEIIE------------DGVNGLLVPNG 304 (348)
T ss_pred hHHHHHHhCCEEEeCccccccCHH--HHHHHHc------CCCEEEecCCCchHhhhc------------cCcceEEeCCC
Confidence 34456678998775432 33332 6677764 999998765433222211 11122333345
Q ss_pred CHHHHHHHHHhhc
Q 027857 178 SAKELLEKMEQYT 190 (217)
Q Consensus 178 d~ee~~~~l~~~~ 190 (217)
|++++.+.|.+..
T Consensus 305 ~~~~~~~~i~~ll 317 (348)
T cd03820 305 DVEALAEALLRLM 317 (348)
T ss_pred CHHHHHHHHHHHH
Confidence 7788888887764
No 70
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=54.81 E-value=15 Score=28.00 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=25.0
Q ss_pred HHHhcCe--eEEccCCCCcHHHHHHHHHHHhcCCC-CCcEEEEe
Q 027857 104 MAQEAEA--FIALPGGYGTMEELLEMITWSQLGIH-KKPVGLLN 144 (217)
Q Consensus 104 ~~~~sda--~IvlpGG~GTL~El~e~~t~~qlg~~-~kPiilln 144 (217)
+....+. .|+.-||=||+.|+...+.- .... ..|+.++-
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~~--~~~~~~~~l~iiP 89 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLMG--SDREDKPPLGIIP 89 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHCT--STSSS--EEEEEE
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHhh--cCCCccceEEEec
Confidence 3455554 88889999999999877632 1111 23777774
No 71
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=54.21 E-value=19 Score=30.47 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=26.9
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRK 43 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g 43 (217)
++++|+|||||=.+.+.-+...|+++.+.|...-
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~ 34 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDK 34 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 3679999999988778788888888877775444
No 72
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=53.92 E-value=56 Score=30.84 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCCCcC---HHHHHHHHHHHcCC--eEEEEecCcccCCccCCCCcceEEecCCHHH
Q 027857 30 DAALELGNELVR-----RKINLVYGGGSVG---LMGLISQTVYAGGC--HVLGIIPKALMPLEISGETVGEVRTVSDMHE 99 (217)
Q Consensus 30 ~~A~~lG~~La~-----~g~~lv~GGg~~G---lM~a~~~gA~~~GG--~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~ 99 (217)
+.|..++..+|+ .+.-.+|||-..| ||.|+...+.+.+- +++.+....+. +.+...+.-..|.+
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 567778888887 4677788875545 99999999999876 55555322110 00001111133432
Q ss_pred HHHHHHHhcCeeEE-----ccCCCCcHHHHHHHHHHHhcCCCCCcEEEE
Q 027857 100 RKAAMAQEAEAFIA-----LPGGYGTMEELLEMITWSQLGIHKKPVGLL 143 (217)
Q Consensus 100 Rk~~~~~~sda~Iv-----lpGG~GTL~El~e~~t~~qlg~~~kPiill 143 (217)
=|... ..|.+++ +.|.-.|-+|+|.+.. .+...+|-|++.
T Consensus 170 Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvlt 214 (408)
T COG0593 170 FKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVLT 214 (408)
T ss_pred HHHhh--ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEEE
Confidence 23332 6787776 6788899999997764 344445655554
No 73
>PRK11914 diacylglycerol kinase; Reviewed
Probab=52.77 E-value=30 Score=30.45 Aligned_cols=45 Identities=29% Similarity=0.330 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCc
Q 027857 31 AALELGNELVRRKI-NLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKA 77 (217)
Q Consensus 31 ~A~~lG~~La~~g~-~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~ 77 (217)
.|.++.+.+++.++ .||..||. |-..+++.+.... +..+||+|.-
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~G 97 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeCC
Confidence 34555655556664 46777888 9999998887643 3579999843
No 74
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=52.35 E-value=39 Score=30.51 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=34.1
Q ss_pred hcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC-----CCcchHHHHHHHh
Q 027857 107 EAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV-----DGYYNSLLALFDN 158 (217)
Q Consensus 107 ~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~-----~gf~~~l~~~l~~ 158 (217)
..|+|||.=| .-||+|.+..+.+.- .. +|||||.+. ....|...++.+.
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l-~~-~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTL-EN-DKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHh-cC-CCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 4788888765 899999999887633 23 899999864 1234555555443
No 75
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=52.12 E-value=55 Score=25.23 Aligned_cols=41 Identities=24% Similarity=0.453 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHH----CCC-eEEEcCCC---cCHHHHHHHHHHHcCCe
Q 027857 29 SDAALELGNELVR----RKI-NLVYGGGS---VGLMGLISQTVYAGGCH 69 (217)
Q Consensus 29 ~~~A~~lG~~La~----~g~-~lv~GGg~---~GlM~a~~~gA~~~GG~ 69 (217)
.+.|+.+|+.||+ .|+ .++++=++ -|-+.|+++++.++|-.
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 5778888888886 686 45554322 58999999999998843
No 76
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.02 E-value=22 Score=31.90 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=61.6
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcc
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVG 89 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~ 89 (217)
++++|.++.-. + .+...+.+.++.++|.++|+.+..---. . ... +. .
T Consensus 2 ~~kkv~lI~n~--~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~---------~~~-----~~------------~--- 48 (305)
T PRK02645 2 QLKQVIIAYKA--G-SSQAKEAAERCAKQLEARGCKVLMGPSG-P---------KDN-----PY------------P--- 48 (305)
T ss_pred CcCEEEEEEeC--C-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h---------hhc-----cc------------c---
Confidence 46778888643 2 3455577888888898888886642211 0 000 00 0
Q ss_pred eEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC---CcchHH------HHHHHhHH
Q 027857 90 EVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD---GYYNSL------LALFDNGV 160 (217)
Q Consensus 90 ~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~---gf~~~l------~~~l~~~~ 160 (217)
. . .....+..|.+|++ ||=||+.+.+..+. ..++|++.+|.. ||.... .+.++++.
T Consensus 49 ~------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 49 V------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred c------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 0 01111346766665 99999998886653 357999999862 676653 24455555
Q ss_pred hcC
Q 027857 161 QEG 163 (217)
Q Consensus 161 ~~g 163 (217)
+..
T Consensus 114 ~g~ 116 (305)
T PRK02645 114 EDR 116 (305)
T ss_pred cCC
Confidence 433
No 77
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=51.58 E-value=56 Score=27.25 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHH
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKEL 182 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 182 (217)
.+...||++|.-...-|.-.=+.|++.. ++|++.-+..+. . +++++ .....+.-.+|++++
T Consensus 259 ~~~~~adi~i~ps~~e~~~~~~~Ea~~~------G~Pvi~s~~~~~-~---~~i~~---------~~~g~~~~~~~~~~~ 319 (359)
T cd03808 259 ELLAAADVFVLPSYREGLPRVLLEAMAM------GRPVIATDVPGC-R---EAVID---------GVNGFLVPPGDAEAL 319 (359)
T ss_pred HHHHhccEEEecCcccCcchHHHHHHHc------CCCEEEecCCCc-h---hhhhc---------CcceEEECCCCHHHH
Confidence 4567899877644322333336677754 899998765432 2 22211 122334445689988
Q ss_pred HHHHHhhc
Q 027857 183 LEKMEQYT 190 (217)
Q Consensus 183 ~~~l~~~~ 190 (217)
.+.+.+..
T Consensus 320 ~~~i~~l~ 327 (359)
T cd03808 320 ADAIERLI 327 (359)
T ss_pred HHHHHHHH
Confidence 88887754
No 78
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=51.38 E-value=14 Score=31.79 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=29.0
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchH
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNS 151 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~ 151 (217)
-+++.||++|.+.+..| +|++- ++||+++++.. ||+.
T Consensus 195 ~Ll~~s~~VvtinStvG-----lEAll------~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 195 ELLEQSDAVVTINSTVG-----LEALL------HGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHhCCEEEEECCHHH-----HHHHH------cCCceEEecCc-ccCC
Confidence 46799999999998775 56664 49999999764 7763
No 79
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=50.78 E-value=29 Score=30.75 Aligned_cols=153 Identities=14% Similarity=0.189 Sum_probs=76.9
Q ss_pred CCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcC-----CeEEEEecCcccCCc
Q 027857 8 GSNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGG-----CHVLGIIPKALMPLE 82 (217)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~G-----G~viGV~P~~~~~~e 82 (217)
.-+++-|++++|.... ..+.+...++++.|-++++-+++-|+. .+. ..+.| |...|+ |..+ +..
T Consensus 91 ~G~I~Gv~~ivGC~n~--~~~~~~~~~iakeL~k~d~LVlt~GC~--a~~-----l~k~gl~~~~g~~~gi-P~vl-~~G 159 (258)
T cd00587 91 DGTIPGVALIVGCNND--KKQDKAYADIAKELMKRGVMVLATGCA--AEA-----LLKLGLEDGAGILGGL-PIVF-DMG 159 (258)
T ss_pred cCCCCeEEEEEeCCCC--CccchHHHHHHHHHHhCCEEEEecchH--HHH-----HHhcCCccccccccCC-Ccee-ecc
Confidence 3467788888877643 244455688999999999999887753 222 23334 555554 4322 221
Q ss_pred cCCCCcceEEecCCHHHHHHHHHH---hcC--eeEEccCCCCcHHHHHHH--HHHHhcCCCCCcEEEEeC-CCcc-hHHH
Q 027857 83 ISGETVGEVRTVSDMHERKAAMAQ---EAE--AFIALPGGYGTMEELLEM--ITWSQLGIHKKPVGLLNV-DGYY-NSLL 153 (217)
Q Consensus 83 ~~~~~~~~~i~~~~m~~Rk~~~~~---~sd--a~IvlpGG~GTL~El~e~--~t~~qlg~~~kPiilln~-~gf~-~~l~ 153 (217)
.+++....-.+..|-..... ..| ++++.|+ -++|=..+ +.+..+| .|+++=-. ..|- ..+.
T Consensus 160 ----sCvD~~~ai~~A~~lA~~fg~~~in~LP~~~~a~~---~~sqKAvAi~~g~l~lG---Ipv~~Gp~~P~~~s~~v~ 229 (258)
T cd00587 160 ----NCVDNSHAANLALKLANMFGGYDRSDLPAVASAPG---AYSQKAAAIATGAVFLG---VPVHVGPPLPVDGSIPVW 229 (258)
T ss_pred ----cchhHHHHHHHHHHHHHHhCCCCcccCceEEEccc---hhhHHHHHHHHHHHHcC---CceeeCCCCccccChhHH
Confidence 22222222233333333222 233 5666666 34444333 3333434 46654211 1111 1223
Q ss_pred HHHHhHHhcCCCCccccccEEEcCCHHHHHHHH
Q 027857 154 ALFDNGVQEGFIKPSARQIIISAPSAKELLEKM 186 (217)
Q Consensus 154 ~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l 186 (217)
++|.+ +. +.-..-.+.+..||+++.+.+
T Consensus 230 ~~L~~----~~-~~~~g~~~~~~~dp~~~a~~i 257 (258)
T cd00587 230 KVLTP----EA-SDNEGGYFISVTDYQDIVQKA 257 (258)
T ss_pred HHHHh----cc-hhccCcEEEecCCHHHHHHHh
Confidence 33321 11 112234567788999988765
No 80
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=50.10 E-value=1.3e+02 Score=23.89 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=55.7
Q ss_pred CCCCCCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEe-cCcccC
Q 027857 2 EEEGYTGSNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGII-PKALMP 80 (217)
Q Consensus 2 ~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~-P~~~~~ 80 (217)
++.|++-+ -++|+|+|-|. ...+.|+..|.++|.++..--..+- .+.+.+.++.-.+..+. | .+.+
T Consensus 20 ~~~~~~~~-gk~v~VvGrs~--------~vG~pla~lL~~~gatV~~~~~~t~---~l~~~v~~ADIVvsAtg~~-~~i~ 86 (140)
T cd05212 20 NKEGVRLD-GKKVLVVGRSG--------IVGAPLQCLLQRDGATVYSCDWKTI---QLQSKVHDADVVVVGSPKP-EKVP 86 (140)
T ss_pred HHcCCCCC-CCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEeCCCCc---CHHHHHhhCCEEEEecCCC-CccC
Confidence 34555333 35899998554 2456778888888988865443321 12223334443333331 2 2222
Q ss_pred CccCCCCcceEEec-CCHHHHHHHHHHhcCeeEEccCCCCcHHHHH
Q 027857 81 LEISGETVGEVRTV-SDMHERKAAMAQEAEAFIALPGGYGTMEELL 125 (217)
Q Consensus 81 ~e~~~~~~~~~i~~-~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~ 125 (217)
.++-.++. -++-+ .++ +.-....+.+.++.=.|||.|-+.=..
T Consensus 87 ~~~ikpGa-~Vidvg~~~-~~~~~~~~~a~~~tPvpgGVGp~T~a~ 130 (140)
T cd05212 87 TEWIKPGA-TVINCSPTK-LSGDDVKESASLYVPMTGGVGKLTVAM 130 (140)
T ss_pred HHHcCCCC-EEEEcCCCc-ccchhhHhhceEEcCCCCCchHHHHHH
Confidence 22222211 11111 111 112344566888888999999876444
No 81
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=49.63 E-value=83 Score=26.52 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=28.4
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcc
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYY 149 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~ 149 (217)
+.+...+.|+|+||. |...+++.+.-.. .+.-+.+.++..+.+|
T Consensus 19 i~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 19 IAKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HHhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 345678999999997 6668888876432 2223556665555444
No 82
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=49.61 E-value=1.7e+02 Score=26.24 Aligned_cols=39 Identities=33% Similarity=0.538 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHh------cCeeEEccCCCCcHHHHHHHHHHHhcC
Q 027857 95 SDMHERKAAMAQE------AEAFIALPGGYGTMEELLEMITWSQLG 134 (217)
Q Consensus 95 ~~m~~Rk~~~~~~------sda~IvlpGG~GTL~El~e~~t~~qlg 134 (217)
.+=.+|-.-|.+. .||++..-||+|+.. +..-+.+..+.
T Consensus 48 gtd~~Ra~dL~~a~a~~dpi~aI~~~rGGyg~~r-lLp~Ld~~~i~ 92 (305)
T PRK11253 48 GTDGERLADLNSLADLTTPNTIVLAVRGGYGASR-LLAGIDWQGLA 92 (305)
T ss_pred CCHHHHHHHHHHHHhcCCCccEEEEecccCCHhH-hhhhCCHHHHh
Confidence 3456677666543 579999999999965 55555555554
No 83
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.20 E-value=1.5e+02 Score=25.05 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccC---CC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL--VYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEIS---GE 86 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l--v~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~---~~ 86 (217)
+.|+|+=+.+ .+.|.++.+.|.+.|+.+ ||=-.+ +..+++.+-..+.....||.- -....++. ..
T Consensus 5 ~vv~Vir~~~-------~~~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGAG--TVl~~e~a~~ai~ 74 (201)
T PRK06015 5 PVIPVLLIDD-------VEHAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGAG--TILNAKQFEDAAK 74 (201)
T ss_pred CEEEEEEcCC-------HHHHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEeeE--eCcCHHHHHHHHH
Confidence 4567764322 256778999999998887 454456 888888776666677778872 11111211 11
Q ss_pred CcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHH
Q 027857 87 TVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITW 130 (217)
Q Consensus 87 ~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~ 130 (217)
.-.+.++.+.+...-... .....+..+|| .-|..|+..+|.+
T Consensus 75 aGA~FivSP~~~~~vi~~-a~~~~i~~iPG-~~TptEi~~A~~~ 116 (201)
T PRK06015 75 AGSRFIVSPGTTQELLAA-ANDSDVPLLPG-AATPSEVMALREE 116 (201)
T ss_pred cCCCEEECCCCCHHHHHH-HHHcCCCEeCC-CCCHHHHHHHHHC
Confidence 113566666664332222 22345777887 5599999988864
No 84
>PRK12359 flavodoxin FldB; Provisional
Probab=49.19 E-value=44 Score=27.51 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCeEEEEecCccc
Q 027857 56 MGLISQTVYAGGCHVLGIIPKALM 79 (217)
Q Consensus 56 M~a~~~gA~~~GG~viGV~P~~~~ 79 (217)
|+...+-..+.|+.++|-.|..-+
T Consensus 101 ~~~l~~~l~~~Ga~ivG~~~~~gY 124 (172)
T PRK12359 101 LGMLHDKLAPKGVKFVGYWPTEGY 124 (172)
T ss_pred HHHHHHHHHhCCCeEEeeEeCCCc
Confidence 445555555667777777665443
No 85
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=48.80 E-value=30 Score=30.59 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCe--EEEEe
Q 027857 30 DAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCH--VLGII 74 (217)
Q Consensus 30 ~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~--viGV~ 74 (217)
..++++++.|-.+|..+|+.-.. +.-..+.+.|.+.|.. +||+-
T Consensus 175 ~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 175 AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEec
Confidence 46788889999999999999554 5566777888888887 99984
No 86
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=48.53 E-value=61 Score=27.54 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCeeEEcc--C--CCC-cHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccE
Q 027857 99 ERKAAMAQEAEAFIALP--G--GYG-TMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQII 173 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp--G--G~G-TL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i 173 (217)
+....+...||++|.-. . |+| + +.|++.. ++||+..+..+ .+.+ .......+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~---~~Ea~a~------G~PvI~~~~~~-~~~i-------------~~~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV---LAYAIGF------GKPVISTPVGH-AEEV-------------LDGGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH---HHHHHHc------CCCEEecCCCC-hhee-------------eeCCCcEE
Confidence 44555778899887532 1 332 4 4456654 89999887653 2221 11122344
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 027857 174 ISAPSAKELLEKMEQYTP 191 (217)
Q Consensus 174 ~~~~d~ee~~~~l~~~~~ 191 (217)
.-.+|++++.+.|.....
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 445678888888876543
No 87
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=48.39 E-value=94 Score=27.06 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCeeEEcc-CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 99 ERKAAMAQEAEAFIALP-GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp-GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
+....+...||++|... -|+|.. +.|++.. ++||+..+..+. .. . +.......+.-.+
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama~------G~Pvi~~~~~~~-~e-------~-----i~~~~~G~~~~~~ 311 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIV--PVEAMAS------GTPVIAYGKGGA-LE-------T-----VIDGVTGILFEEQ 311 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCch--HHHHHHc------CCCEEEeCCCCC-cc-------e-----eeCCCCEEEeCCC
Confidence 44556778899888632 566665 4677764 899999876542 11 1 1112233444467
Q ss_pred CHHHHHHHHHhhcCC
Q 027857 178 SAKELLEKMEQYTPA 192 (217)
Q Consensus 178 d~ee~~~~l~~~~~~ 192 (217)
|++++.+.|......
T Consensus 312 ~~~~la~~i~~l~~~ 326 (351)
T cd03804 312 TVESLAAAVERFEKN 326 (351)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899988888776543
No 88
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=48.30 E-value=40 Score=26.12 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCCC-cCHHHHHHHHHHHcCC
Q 027857 29 SDAALELGNELVR----RKINLV-Y--GGGS-VGLMGLISQTVYAGGC 68 (217)
Q Consensus 29 ~~~A~~lG~~La~----~g~~lv-~--GGg~-~GlM~a~~~gA~~~GG 68 (217)
.+.|+.+|+.||+ .|+.-| + ||.. -|-+.|++++|.++|-
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 6788889988886 454432 2 3322 5899999999999873
No 89
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=47.60 E-value=1.4e+02 Score=23.53 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 33 LELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 33 ~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
.-++..|-.+||.+++-|-. =--+...+.|.+.+-.++|+
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 44556677799999998877 67799999999999999999
No 90
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=47.58 E-value=73 Score=29.22 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=29.2
Q ss_pred CCc-EEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHHHHHHHh
Q 027857 137 KKP-VGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKMEQ 188 (217)
Q Consensus 137 ~kP-iilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 188 (217)
.+| +++++..-|+......+..+...-.. ....+++.-+++.+.++..+
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~---~~~~V~ld~ple~~l~RN~~ 174 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSL---GFCQLFLDCPVESCLLRNKQ 174 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCC---CEEEEEEeCCHHHHHHHHhc
Confidence 567 56777765666766666655543111 12456666777777766643
No 91
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=47.56 E-value=31 Score=32.51 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCCeEEEcCC----------CcCHHHHHHHHHHHc
Q 027857 30 DAALELGNELVRRKINLVYGGG----------SVGLMGLISQTVYAG 66 (217)
Q Consensus 30 ~~A~~lG~~La~~g~~lv~GGg----------~~GlM~a~~~gA~~~ 66 (217)
+.|+.|+..|-++|+.|||||- +.|+.++.++-+++.
T Consensus 328 ~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 328 KNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 4567778888889999999995 468999988888874
No 92
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=47.11 E-value=1.2e+02 Score=29.02 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=50.2
Q ss_pred cCHHHHHHHHHHHcCCeEE----------EEe-cCccc--CCcc-CCC--------Cc-ceEEecCCHHHHHHHHHHhcC
Q 027857 53 VGLMGLISQTVYAGGCHVL----------GII-PKALM--PLEI-SGE--------TV-GEVRTVSDMHERKAAMAQEAE 109 (217)
Q Consensus 53 ~GlM~a~~~gA~~~GG~vi----------GV~-P~~~~--~~e~-~~~--------~~-~~~i~~~~m~~Rk~~~~~~sd 109 (217)
.|+|++.++-|...|-..+ -++ |.... .+.+ ..| ++ .+++.+++-..-|.+..+...
T Consensus 36 ~~~rre~a~~aq~~g~t~vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t 115 (535)
T KOG4435|consen 36 QGIRREYAKIAQKYGETTVPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDT 115 (535)
T ss_pred HHHHHHHHHHHHHhccccCCcccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhcc
Confidence 4999999999998774322 121 22221 0000 011 11 234444555444444333221
Q ss_pred --eeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHH
Q 027857 110 --AFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSL 152 (217)
Q Consensus 110 --a~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l 152 (217)
=+|++.||=||+.|+..=+- .-+...-|+.++-. -|++|
T Consensus 116 ~~Dii~VaGGDGT~~eVVTGi~--Rrr~~~~pv~~~P~--G~~~l 156 (535)
T KOG4435|consen 116 QEDIIYVAGGDGTIGEVVTGIF--RRRKAQLPVGFYPG--GYDNL 156 (535)
T ss_pred CCCeEEEecCCCcHHHhhHHHH--hcccccCceeeccC--ccchH
Confidence 36777899999999874432 22233468888742 34544
No 93
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=47.07 E-value=1.2e+02 Score=26.97 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=37.3
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC------------------------------eEEEcCCCcCHHHH
Q 027857 9 SNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKI------------------------------NLVYGGGSVGLMGL 58 (217)
Q Consensus 9 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~------------------------------~lv~GGg~~GlM~a 58 (217)
+++++|+|+.-.. .+...+.+.++.++|.++|+ .+++-||. |-|--
T Consensus 3 ~~~~~v~iv~~~~---~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~ 78 (291)
T PRK02155 3 SQFKTVALIGRYQ---TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLG 78 (291)
T ss_pred CcCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHH
Confidence 4567899996433 24555566666666654443 34555666 66666
Q ss_pred HHHHHHHcCCeEEEE
Q 027857 59 ISQTVYAGGCHVLGI 73 (217)
Q Consensus 59 ~~~gA~~~GG~viGV 73 (217)
+++.....+-.++||
T Consensus 79 ~~~~~~~~~~pilGI 93 (291)
T PRK02155 79 IGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHhcCCCCCEEEE
Confidence 666555556677877
No 94
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=47.01 E-value=2.3e+02 Score=25.94 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=41.5
Q ss_pred cCeeEE-ccCCCCcHHHHHHHHHHHhcC-CCCCcEEEEeCCC-cchHHHHHHHhHHhcCCCCccccccEEEcCCHHHHHH
Q 027857 108 AEAFIA-LPGGYGTMEELLEMITWSQLG-IHKKPVGLLNVDG-YYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLE 184 (217)
Q Consensus 108 sda~Iv-lpGG~GTL~El~e~~t~~qlg-~~~kPiilln~~g-f~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~ 184 (217)
-|++++ ++|++...+++.+.+.-..-. .++|||++. ..| ..+...+. +.+.|+ -+.+.++|+++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~~---L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKKI---LAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHH---HHHCCC-------CceecCCHHHHHH
Confidence 365553 567777778888776543322 258999554 333 22222222 222221 1567899999999
Q ss_pred HHHhh
Q 027857 185 KMEQY 189 (217)
Q Consensus 185 ~l~~~ 189 (217)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 88754
No 95
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=47.00 E-value=99 Score=26.25 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccC---CC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL--VYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEIS---GE 86 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l--v~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~---~~ 86 (217)
+.|+|+=+.+ .+.+.++++.|.+.|+.+ ||=-.+ +..+++.+-..+.+...+|.- -....+.. -+
T Consensus 9 ~liaVlr~~~-------~e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAG--TVl~~~~a~~a~~ 78 (204)
T TIGR01182 9 KIVPVIRIDD-------VDDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAG--TVLNPEQLRQAVD 78 (204)
T ss_pred CEEEEEecCC-------HHHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEE--eCCCHHHHHHHHH
Confidence 4567764332 256678889999988876 443445 777777776666666678872 11111111 11
Q ss_pred CcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHH
Q 027857 87 TVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITW 130 (217)
Q Consensus 87 ~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~ 130 (217)
.-.+.++.+++.. ...-......+..+| |.-|..|+..++.+
T Consensus 79 aGA~FivsP~~~~-~v~~~~~~~~i~~iP-G~~TptEi~~A~~~ 120 (204)
T TIGR01182 79 AGAQFIVSPGLTP-ELAKHAQDHGIPIIP-GVATPSEIMLALEL 120 (204)
T ss_pred cCCCEEECCCCCH-HHHHHHHHcCCcEEC-CCCCHHHHHHHHHC
Confidence 1134666666632 222122233577888 67899999988864
No 96
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=46.88 E-value=2e+02 Score=25.31 Aligned_cols=112 Identities=15% Similarity=0.253 Sum_probs=65.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcc
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV-YGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVG 89 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv-~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~ 89 (217)
.-++=|.+....-..+. ...-+-.+.|++.|+.++ |-.-. + ..++...+.|...+ .| .-.+... ...+
T Consensus 93 ~iKlEVi~d~~~Llpd~--~~tv~aa~~L~~~Gf~vlpyc~dd--~--~~ar~l~~~G~~~v--mP-lg~pIGs-g~Gi- 161 (248)
T cd04728 93 WIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFTVLPYCTDD--P--VLAKRLEDAGCAAV--MP-LGSPIGS-GQGL- 161 (248)
T ss_pred eEEEEEecCccccccCH--HHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CC-CCcCCCC-CCCC-
Confidence 34566666554332222 233456777889999998 75544 2 34444555676555 33 1111111 1111
Q ss_pred eEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 90 EVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 90 ~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
.+ .+.-+.+.+..+.-|+..||++|.+++..++.+ +-=-+++|+
T Consensus 162 -----~~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Amel------GAdgVlV~S 205 (248)
T cd04728 162 -----LN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL------GADAVLLNT 205 (248)
T ss_pred -----CC-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHc------CCCEEEECh
Confidence 11 334446667688999999999999999999875 444556654
No 97
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=46.70 E-value=2e+02 Score=25.21 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=41.1
Q ss_pred HHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCC--cchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 100 RKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDG--YYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 100 Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~g--f~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
.-..++..||++|. .+|.+|+- |++.. ++|++.....+ ..+... ..+.+.+.| ...+.-.+
T Consensus 245 ~~~~~~~~~d~~i~-~~g~~~~~---Ea~~~------g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~------~g~~~~~~ 307 (357)
T PRK00726 245 DMAAAYAAADLVIC-RAGASTVA---ELAAA------GLPAILVPLPHAADDHQTA-NARALVDAG------AALLIPQS 307 (357)
T ss_pred hHHHHHHhCCEEEE-CCCHHHHH---HHHHh------CCCEEEecCCCCCcCcHHH-HHHHHHHCC------CEEEEEcc
Confidence 33456789999886 55556644 45554 89999885421 111111 112233322 12233334
Q ss_pred C--HHHHHHHHHhhcC
Q 027857 178 S--AKELLEKMEQYTP 191 (217)
Q Consensus 178 d--~ee~~~~l~~~~~ 191 (217)
| ++++.+.|.+...
T Consensus 308 ~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 308 DLTPEKLAEKLLELLS 323 (357)
T ss_pred cCCHHHHHHHHHHHHc
Confidence 4 8888888876543
No 98
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=46.33 E-value=1.1e+02 Score=26.18 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=40.8
Q ss_pred HHHHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 100 RKAAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 100 Rk~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
....+...||++|.-. .|+|. =+.|++.. ++|+|..+..+.-+ .+. ......+.-..
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~~------g~PvI~~~~~~~~e----~~~---------~~~~g~~~~~~ 315 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPN--TAIEALAC------GTPVVAFDVGGIPD----IVD---------HGVTGYLAKPG 315 (365)
T ss_pred HHHHHHHhCCEEEeccccccccH--HHHHHHhc------CCCEEEecCCCChh----hee---------CCCceEEeCCC
Confidence 4455678899887643 23332 35666764 99999888654321 111 11123333345
Q ss_pred CHHHHHHHHHhhc
Q 027857 178 SAKELLEKMEQYT 190 (217)
Q Consensus 178 d~ee~~~~l~~~~ 190 (217)
|++++.+.+.+..
T Consensus 316 ~~~~~~~~l~~l~ 328 (365)
T cd03825 316 DPEDLAEGIEWLL 328 (365)
T ss_pred CHHHHHHHHHHHH
Confidence 7888888777654
No 99
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=46.22 E-value=84 Score=26.07 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=39.5
Q ss_pred HHHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCC
Q 027857 101 KAAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS 178 (217)
Q Consensus 101 k~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 178 (217)
...+...||++|... .|.|+ =++|++.. ++|+|..+..++. +++++ .....+.-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~~------g~pvI~~~~~~~~----~~~~~---------~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGL--VLLEAMAA------GLPVVASDVGGIP----EVVED---------GETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccc--hHHHHHHc------CCcEEEeCCCChh----HHhcC---------CcceEEeCCCC
Confidence 344567799877643 23332 25566654 8999988764332 21111 12233444556
Q ss_pred HHHHHHHHHhhc
Q 027857 179 AKELLEKMEQYT 190 (217)
Q Consensus 179 ~ee~~~~l~~~~ 190 (217)
++++.+.|.+..
T Consensus 328 ~~~l~~~i~~~~ 339 (374)
T cd03801 328 PEALAEAILRLL 339 (374)
T ss_pred HHHHHHHHHHHH
Confidence 888888887753
No 100
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=46.13 E-value=47 Score=28.46 Aligned_cols=40 Identities=28% Similarity=0.271 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHH----CCCeEEE---cCCC-cCHHHHHHHHHHHcCC
Q 027857 29 SDAALELGNELVR----RKINLVY---GGGS-VGLMGLISQTVYAGGC 68 (217)
Q Consensus 29 ~~~A~~lG~~La~----~g~~lv~---GGg~-~GlM~a~~~gA~~~GG 68 (217)
.+.|+++|+.||+ .|+.=|. ||.. -|-+.|.|++|.++|-
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~GL 209 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVGL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcCC
Confidence 4678999999987 4654432 3322 4999999999999873
No 101
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=45.29 E-value=55 Score=28.76 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=28.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
+++|+|.+|......+.=.+.++.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 44688777655445566678999999999999998654
No 102
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=44.63 E-value=46 Score=27.98 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=27.2
Q ss_pred CCCCCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027857 3 EEGYTGSNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGG 50 (217)
Q Consensus 3 ~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GG 50 (217)
||.....++++|.|+|+++ ...+.+.+.|.++|+.++.-.
T Consensus 9 ~~~~~~~~~~~ilItGasG--------~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 9 EEDAENVKTKTVFVAGATG--------RTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred ccccccccCCeEEEECCCc--------HHHHHHHHHHHhCCCEEEEEe
Confidence 4445555677899998766 345667777778888875433
No 103
>PRK12361 hypothetical protein; Provisional
Probab=44.57 E-value=45 Score=32.10 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCc
Q 027857 32 ALELGNELVRRKI-NLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKA 77 (217)
Q Consensus 32 A~~lG~~La~~g~-~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~ 77 (217)
|.++.+..++.++ .||..||. |--..+..+.... +..+||+|..
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~G 330 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPLG 330 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecCC
Confidence 4556666555554 56677888 9888888888754 4579999843
No 104
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=44.42 E-value=99 Score=26.36 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCeeEEccCC------CCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCcccccc
Q 027857 99 ERKAAMAQEAEAFIALPGG------YGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQI 172 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG------~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~ 172 (217)
+....+...||++|...-. -|.-.=++|++.. ++|++..+..++-+ + ++ ......
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~------G~Pvi~~~~~~~~~-~---i~---------~~~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAM------GLPVISTDVSGIPE-L---VE---------DGETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHc------CCCEEecCCCCcch-h---hh---------CCCceE
Confidence 4455567889987774322 2333446777765 99999877654321 1 11 111233
Q ss_pred EEEcCCHHHHHHHHHhhc
Q 027857 173 IISAPSAKELLEKMEQYT 190 (217)
Q Consensus 173 i~~~~d~ee~~~~l~~~~ 190 (217)
+.-.+|++++.+.|.+..
T Consensus 308 ~~~~~~~~~l~~~i~~~~ 325 (355)
T cd03799 308 LVPPGDPEALADAIERLL 325 (355)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 333458888888887654
No 105
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.31 E-value=78 Score=24.78 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 30 DAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 30 ~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
..+.-+...|...||.+++-|.. ---+.+++.|.+.+..++|+
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34455667778899999999887 66778889999999999999
No 106
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=44.16 E-value=47 Score=28.75 Aligned_cols=33 Identities=30% Similarity=0.551 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHH
Q 027857 120 TMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLAL 155 (217)
Q Consensus 120 TL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~ 155 (217)
||+-+++......-.-...||+|+ |||+|++.+
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888877543322246899998 699999875
No 107
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=44.11 E-value=1.3e+02 Score=26.60 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe-CCCcchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 99 ERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN-VDGYYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln-~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
+....+...+|++|.-.-.-|.--=+.|+++. ++||+..+ ..| ... ++.+ .....+.-.+
T Consensus 249 ~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~------G~Pvv~s~~~~g-~~e-------iv~~-----~~~G~lv~~~ 309 (359)
T PRK09922 249 EVVQQKIKNVSALLLTSKFEGFPMTLLEAMSY------GIPCISSDCMSG-PRD-------IIKP-----GLNGELYTPG 309 (359)
T ss_pred HHHHHHHhcCcEEEECCcccCcChHHHHHHHc------CCCEEEeCCCCC-hHH-------HccC-----CCceEEECCC
Confidence 33344456789888644322222336666654 89999988 443 222 2211 1223344568
Q ss_pred CHHHHHHHHHhhcCCC
Q 027857 178 SAKELLEKMEQYTPAH 193 (217)
Q Consensus 178 d~ee~~~~l~~~~~~~ 193 (217)
|++++.+.|.......
T Consensus 310 d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 310 NIDEFVGKLNKVISGE 325 (359)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 9999999998876543
No 108
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=43.69 E-value=58 Score=29.60 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=36.5
Q ss_pred HhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC-----CCcchHHHHHHHhH
Q 027857 106 QEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV-----DGYYNSLLALFDNG 159 (217)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~-----~gf~~~l~~~l~~~ 159 (217)
+..|+|||.=| .-||+|-+..+.++- ...+|||||.+. ..-.|...++.+.+
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l-~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFML-ENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHH-hCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45799988875 899999998887643 223899999874 22356666665543
No 109
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=43.69 E-value=20 Score=33.75 Aligned_cols=27 Identities=44% Similarity=0.678 Sum_probs=20.2
Q ss_pred eEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 45 NLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 45 ~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
.+|-|||+.|+|.|+.-+- +|.+|+=+
T Consensus 6 viIIGgGpAGlMaA~~aa~--~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAAK--AGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHhh--cCCEEEEE
Confidence 5788999999999887544 56666544
No 110
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=43.56 E-value=47 Score=25.44 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCC-CcCHHHHHHHHHHHcCC
Q 027857 29 SDAALELGNELVR----RKINLV-Y--GGG-SVGLMGLISQTVYAGGC 68 (217)
Q Consensus 29 ~~~A~~lG~~La~----~g~~lv-~--GGg-~~GlM~a~~~gA~~~GG 68 (217)
.+.|+.+|+.||+ .|+.=| + ||. .-|-+.|+++||.++|-
T Consensus 60 ~~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL 107 (109)
T CHL00139 60 CDASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 4578889988886 454332 2 331 24899999999999873
No 111
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=43.40 E-value=40 Score=28.15 Aligned_cols=81 Identities=10% Similarity=0.097 Sum_probs=52.6
Q ss_pred hcCeeEEccCCCCcHHHHHHHHHHH-------hcCCCCCcEEEEeCCCcchHH--HHHHHhHHhcCCC-CccccccEEEc
Q 027857 107 EAEAFIALPGGYGTMEELLEMITWS-------QLGIHKKPVGLLNVDGYYNSL--LALFDNGVQEGFI-KPSARQIIISA 176 (217)
Q Consensus 107 ~sda~IvlpGG~GTL~El~e~~t~~-------qlg~~~kPiilln~~gf~~~l--~~~l~~~~~~gfi-~~~~~~~i~~~ 176 (217)
.+|++||.|-..+|+.-+..=++-. ..-..++|+++.-. ..|.+- .+-++++.+.|+. =+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 4899999999999998775321111 11125799999865 466532 3445667776753 23333556666
Q ss_pred CCHHHHHHHHHh
Q 027857 177 PSAKELLEKMEQ 188 (217)
Q Consensus 177 ~d~ee~~~~l~~ 188 (217)
.+.+|+++++-.
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 899999998854
No 112
>PRK00208 thiG thiazole synthase; Reviewed
Probab=43.32 E-value=2.3e+02 Score=24.97 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=67.6
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCc
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV-YGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETV 88 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv-~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~ 88 (217)
+.-++=|.+.......+. ...-+-++.|++.|+.++ |-.-. + ..++...+.|...+ .| .-.+... ..++
T Consensus 92 ~~iKlEVi~d~~~llpd~--~~tv~aa~~L~~~Gf~vlpyc~~d--~--~~ak~l~~~G~~~v--mP-lg~pIGs-g~gi 161 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFVVLPYCTDD--P--VLAKRLEEAGCAAV--MP-LGAPIGS-GLGL 161 (250)
T ss_pred CeEEEEEecCCCCCCcCH--HHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CC-CCcCCCC-CCCC
Confidence 344666777655432222 234556777889999998 75544 2 33444555576555 33 1111111 1111
Q ss_pred ceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 89 GEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 89 ~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
.+ .+..+.+.+..+.-|+..||++|.+++..++.+ +-=-+++|+
T Consensus 162 ------~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Amel------GAdgVlV~S 205 (250)
T PRK00208 162 ------LN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMEL------GADAVLLNT 205 (250)
T ss_pred ------CC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc------CCCEEEECh
Confidence 11 444666777788999999999999999999875 444556654
No 113
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=43.15 E-value=1.1e+02 Score=25.38 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=49.5
Q ss_pred hcCeeEEccCCCCcHHHHHHHHHHH-------hcCCCCCcEEEEeCCCcchH-H-HHHHHhHHhcCC--CCccccccEEE
Q 027857 107 EAEAFIALPGGYGTMEELLEMITWS-------QLGIHKKPVGLLNVDGYYNS-L-LALFDNGVQEGF--IKPSARQIIIS 175 (217)
Q Consensus 107 ~sda~IvlpGG~GTL~El~e~~t~~-------qlg~~~kPiilln~~gf~~~-l-~~~l~~~~~~gf--i~~~~~~~i~~ 175 (217)
.+|++||.|-..+|+.-+..=++-. ..-..++|+++.=.+ .|.. . .+-++++.+.|+ +++ ......-
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~-m~~~~~~~~Nl~~L~~~G~~ii~P-~~g~~~~ 152 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRE-TPLNSIHLENMLRLSRMGAIILPP-MPAFYTR 152 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCC-CcCCHHHHHHHHHHHHCCCEEECC-CCcccCC
Confidence 4899999999999998876321110 011247999998654 4432 2 223455666664 333 3345566
Q ss_pred cCCHHHHHHHHHh
Q 027857 176 APSAKELLEKMEQ 188 (217)
Q Consensus 176 ~~d~ee~~~~l~~ 188 (217)
-.+++|+++++..
T Consensus 153 p~~~~~~~~~i~~ 165 (181)
T TIGR00421 153 PKSVEDMIDFIVG 165 (181)
T ss_pred CCCHHHHHHHHHH
Confidence 6899997777754
No 114
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=42.85 E-value=48 Score=28.06 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=52.1
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHHhcC-------CCCCcEEEEeCC-CcchHHHHHHHhHHhcC-CCCccccccEEEcCC
Q 027857 108 AEAFIALPGGYGTMEELLEMITWSQLG-------IHKKPVGLLNVD-GYYNSLLALFDNGVQEG-FIKPSARQIIISAPS 178 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~qlg-------~~~kPiilln~~-gf~~~l~~~l~~~~~~g-fi~~~~~~~i~~~~d 178 (217)
.|+.||.|=...||..+..=++..-+. +.++|++|+-.+ .+-..=++-+-++.+.| .|-+....+.+--.+
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 478999999999999988655544442 357888887543 33222122222334444 445566677777889
Q ss_pred HHHHHHHHHh
Q 027857 179 AKELLEKMEQ 188 (217)
Q Consensus 179 ~ee~~~~l~~ 188 (217)
.||+++++-.
T Consensus 161 ieDlvd~~v~ 170 (191)
T COG0163 161 IEDLVDFVVG 170 (191)
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 115
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=42.82 E-value=36 Score=28.06 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=49.7
Q ss_pred HhcCeeEEccCCCCcHHHHHHHHHHHh-----cC-CCCCcEEEEe---CCCcch--HHHHHHHhHHhcCC--CCccccc-
Q 027857 106 QEAEAFIALPGGYGTMEELLEMITWSQ-----LG-IHKKPVGLLN---VDGYYN--SLLALFDNGVQEGF--IKPSARQ- 171 (217)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~e~~t~~q-----lg-~~~kPiilln---~~gf~~--~l~~~l~~~~~~gf--i~~~~~~- 171 (217)
..+|++||.|=..+|+.-+..=++-.- +. ..++|+++.- . ..|+ ...+.++++.+.|+ +++....
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~-~M~~~p~~~~nl~~L~~~G~~vi~P~~g~l 153 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNT-KMYQNPITQRNIKILKKIGYQEIQPKESLL 153 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCH-HHhCCHHHHHHHHHHHHCCCEEECCCcCcc
Confidence 368999999999999987763222111 11 2378999863 3 3675 33445666766664 3443311
Q ss_pred -----cEEEcCCHHHHHHHHHhh
Q 027857 172 -----IIISAPSAKELLEKMEQY 189 (217)
Q Consensus 172 -----~i~~~~d~ee~~~~l~~~ 189 (217)
-.=-..+++++++.+.++
T Consensus 154 a~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 154 ACGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred cCCCccccCCCCHHHHHHHHHHh
Confidence 122234678888877654
No 116
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=42.81 E-value=2.4e+02 Score=24.97 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=35.1
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecC
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPK 76 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~ 76 (217)
+++++-|-|.|+ + ..+++++.||++|+.|+-=+...=-++++++.-.+..|.-+=|+|-
T Consensus 5 ~~~~~lITGASs-G-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~ 63 (265)
T COG0300 5 KGKTALITGASS-G-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA 63 (265)
T ss_pred CCcEEEEECCCc-h-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC
Confidence 344555655444 3 3456777888888888777777555555665555444444445443
No 117
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=42.63 E-value=1.4e+02 Score=22.91 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCeeEEccC--CCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEE
Q 027857 98 HERKAAMAQEAEAFIALPG--GYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIIS 175 (217)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpG--G~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 175 (217)
.+....+...||++|...- |+|+ =+.|++.. ++|+++-+.. .+. + .+.+ .....++-
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~~------g~pvI~~~~~-~~~---e----~~~~-----~~~g~~~~ 141 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAMAC------GCPVIASDIG-GNN---E----IIND-----GVNGFLFD 141 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHHT------T-EEEEESST-HHH---H----HSGT-----TTSEEEES
T ss_pred ccccccccccceecccccccccccc--cccccccc------ccceeecccc-CCc---e----eecc-----ccceEEeC
Confidence 4556667888998888643 3333 45666664 8999988754 222 2 2211 11234555
Q ss_pred cCCHHHHHHHHHhhc
Q 027857 176 APSAKELLEKMEQYT 190 (217)
Q Consensus 176 ~~d~ee~~~~l~~~~ 190 (217)
..|++++.+.|.+..
T Consensus 142 ~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 142 PNDIEELADAIEKLL 156 (172)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 668899998887654
No 118
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=42.57 E-value=55 Score=31.29 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcCHHHHHHHHHHHcC------CeEEEEecCc
Q 027857 32 ALELGNELVRRKI-NLVYGGGSVGLMGLISQTVYAGG------CHVLGIIPKA 77 (217)
Q Consensus 32 A~~lG~~La~~g~-~lv~GGg~~GlM~a~~~gA~~~G------G~viGV~P~~ 77 (217)
|+++.+.++..++ .||.-||. |..-.+..|..... ...+||+|.-
T Consensus 157 A~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPaG 208 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPAG 208 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecCc
Confidence 4556666655555 56777888 99999999987542 3569999853
No 119
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=42.50 E-value=27 Score=30.67 Aligned_cols=93 Identities=16% Similarity=0.282 Sum_probs=54.2
Q ss_pred HHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeE
Q 027857 33 LELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFI 112 (217)
Q Consensus 33 ~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~I 112 (217)
.+-.+.|.+.||.+.-=..+ .=.+++--.++|..+ |.|=. .|.. ...++. + ..--+++.+.++.-|
T Consensus 113 l~Aae~Lv~eGF~VlPY~~~---D~v~akrL~d~Gcaa--vMPlg-sPIG-Sg~Gi~------n-~~~l~~i~~~~~vPv 178 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLPYCTD---DPVLAKRLEDAGCAA--VMPLG-SPIG-SGRGIQ------N-PYNLRIIIERADVPV 178 (247)
T ss_dssp HHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-SE--BEEBS-SSTT-T---SS------T-HHHHHHHHHHGSSSB
T ss_pred HHHHHHHHHCCCEEeecCCC---CHHHHHHHHHCCCCE--EEecc-cccc-cCcCCC------C-HHHHHHHHHhcCCcE
Confidence 45567788888888642333 456677777788754 33311 1111 011111 1 233566778889999
Q ss_pred EccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 113 ALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 113 vlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
++-+|+||.++..+++.+ +---+|+|+
T Consensus 179 IvDAGiG~pSdaa~AMEl------G~daVLvNT 205 (247)
T PF05690_consen 179 IVDAGIGTPSDAAQAMEL------GADAVLVNT 205 (247)
T ss_dssp EEES---SHHHHHHHHHT------T-SEEEESH
T ss_pred EEeCCCCCHHHHHHHHHc------CCceeehhh
Confidence 999999999999999987 777788885
No 120
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=42.44 E-value=63 Score=30.54 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=36.5
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC-----CCcchHHHHHHHh
Q 027857 108 AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV-----DGYYNSLLALFDN 158 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~-----~gf~~~l~~~l~~ 158 (217)
.|+|||.=| .-||+|-+.+++++- ..+|||||.+. .--.|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799988875 899999999988755 45899999874 2245666666653
No 121
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=42.20 E-value=96 Score=26.63 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=40.9
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHH
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKEL 182 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 182 (217)
.+...||++|.-.---|.-.=+.|+++. ++|||.-+..|. . +.+++ ....+...++++++
T Consensus 262 ~~~~~adi~v~ps~~E~~~~~~lEAma~------G~PvI~s~~~~~-~---~~i~~----------~~~~~~~~~~~~~~ 321 (358)
T cd03812 262 ELLQAMDVFLFPSLYEGLPLVLIEAQAS------GLPCILSDTITK-E---VDLTD----------LVKFLSLDESPEIW 321 (358)
T ss_pred HHHHhcCEEEecccccCCCHHHHHHHHh------CCCEEEEcCCch-h---hhhcc----------CccEEeCCCCHHHH
Confidence 4678899887543211222336777765 999999876542 1 11111 12344455677998
Q ss_pred HHHHHhhcC
Q 027857 183 LEKMEQYTP 191 (217)
Q Consensus 183 ~~~l~~~~~ 191 (217)
.+.|.+...
T Consensus 322 a~~i~~l~~ 330 (358)
T cd03812 322 AEEILKLKS 330 (358)
T ss_pred HHHHHHHHh
Confidence 888877643
No 122
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.12 E-value=1.4e+02 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=20.4
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKIN 45 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~ 45 (217)
.+++|+|+.-... +...+.++++.++|.++|+.
T Consensus 3 ~~~~v~iv~~~~k---~~a~e~~~~i~~~L~~~gie 35 (295)
T PRK01231 3 SFRNIGLIGRLGS---SSVVETLRRLKDFLLDRGLE 35 (295)
T ss_pred CCCEEEEEecCCC---HHHHHHHHHHHHHHHHCCCE
Confidence 4678999964332 45556667777766555433
No 123
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=41.96 E-value=1.1e+02 Score=27.29 Aligned_cols=71 Identities=13% Similarity=0.246 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCeeEEc--cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEc
Q 027857 99 ERKAAMAQEAEAFIAL--PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISA 176 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivl--pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 176 (217)
+....+...||++|.- ..|+|+. +.|++.. ++||+..+..+. ..+ + .++ ....+.-.
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma~------G~Pvi~~~~~~~-~e~---i----~~~-----~~g~~~~~ 352 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLV--AMEAQAC------GTPVVAARVGGL-PVA---V----ADG-----ETGLLVDG 352 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChH--HHHHHHc------CCCEEEecCCCc-Hhh---h----ccC-----CceEECCC
Confidence 4455678899988863 3566653 6677765 899998876532 211 1 111 11122223
Q ss_pred CCHHHHHHHHHhhc
Q 027857 177 PSAKELLEKMEQYT 190 (217)
Q Consensus 177 ~d~ee~~~~l~~~~ 190 (217)
+|++++.+.|.+..
T Consensus 353 ~d~~~la~~i~~~l 366 (405)
T TIGR03449 353 HDPADWADALARLL 366 (405)
T ss_pred CCHHHHHHHHHHHH
Confidence 58888777776553
No 124
>PRK00654 glgA glycogen synthase; Provisional
Probab=41.85 E-value=2.9e+02 Score=25.68 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=40.1
Q ss_pred HHHHHhcCeeEEc--cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCC-CccccccEEEcCC
Q 027857 102 AAMAQEAEAFIAL--PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFI-KPSARQIIISAPS 178 (217)
Q Consensus 102 ~~~~~~sda~Ivl--pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi-~~~~~~~i~~~~d 178 (217)
..+...||++|.- --|+|.. +.|++. .++|+|+.+..|.-+-+.+ +-- ......+++-.+|
T Consensus 351 ~~~~~~aDv~v~PS~~E~~gl~--~lEAma------~G~p~V~~~~gG~~e~v~~--------~~~~~~~~~G~lv~~~d 414 (466)
T PRK00654 351 HRIYAGADMFLMPSRFEPCGLT--QLYALR------YGTLPIVRRTGGLADTVID--------YNPEDGEATGFVFDDFN 414 (466)
T ss_pred HHHHhhCCEEEeCCCCCCchHH--HHHHHH------CCCCEEEeCCCCccceeec--------CCCCCCCCceEEeCCCC
Confidence 3467889988763 2556643 445554 3789888887765442211 100 0012233444568
Q ss_pred HHHHHHHHHhh
Q 027857 179 AKELLEKMEQY 189 (217)
Q Consensus 179 ~ee~~~~l~~~ 189 (217)
++++.+.|.+.
T Consensus 415 ~~~la~~i~~~ 425 (466)
T PRK00654 415 AEDLLRALRRA 425 (466)
T ss_pred HHHHHHHHHHH
Confidence 88887777643
No 125
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=41.81 E-value=75 Score=27.30 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 30 DAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 30 ~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
..++++++.|-.+|..+|+..+. + ..+.+.|.+.|..+||+
T Consensus 166 ~~a~~~a~~l~~~G~DvI~~~~~-~--~g~~~aa~~~g~~~IG~ 206 (258)
T cd06353 166 AKEKEAALALIDQGADVIYQHTD-S--PGVIQAAEEKGVYAIGY 206 (258)
T ss_pred HHHHHHHHHHHHCCCcEEEecCC-C--hHHHHHHHHhCCEEEee
Confidence 45677778888899999998862 4 24566777889999999
No 126
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=41.72 E-value=1.6e+02 Score=25.01 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcc
Q 027857 105 AQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYY 149 (217)
Q Consensus 105 ~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~ 149 (217)
.+...+.|+|+||. |...+++.+.-. .+.-..+.++..+.+|
T Consensus 25 ~~~~~~~lalsGGs-tp~~~y~~L~~~--~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 25 AERGQFSLALSGGR-SPIALLEALAAQ--PLDWSRIHLFLGDERY 66 (233)
T ss_pred HhcCcEEEEECCCc-cHHHHHHHHhhC--CCCcceEEEEEecccc
Confidence 44577899999996 888898888643 3333555555555555
No 127
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=41.60 E-value=1.9e+02 Score=23.30 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=27.4
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcc
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYY 149 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~ 149 (217)
+.+...+.|+|+||. |..++++.+.-......-+.+.++..+.+|
T Consensus 16 ~~~~~~~~i~lsgGs-Tp~~~y~~L~~~~~~~~w~~v~~f~~DEr~ 60 (169)
T cd00458 16 LEEKDDMVIGLGTGS-TPAYFYKLLGEKLKRGEISDIVGFPTDERY 60 (169)
T ss_pred HHhCCCEEEEECCCc-cHHHHHHHHHhhhhhCCccceEEEECcccc
Confidence 335567889999986 777787776532211112456666666554
No 128
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=41.47 E-value=58 Score=22.92 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=23.6
Q ss_pred CeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 027857 109 EAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDG 147 (217)
Q Consensus 109 da~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~g 147 (217)
--+|.|| +|++||..+.+ .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 4678899 59999998876 577764 555566554
No 129
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=41.29 E-value=33 Score=29.89 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=17.0
Q ss_pred eEEEcCCCcCHHHHHHHHHHHcCCeEE
Q 027857 45 NLVYGGGSVGLMGLISQTVYAGGCHVL 71 (217)
Q Consensus 45 ~lv~GGg~~GlM~a~~~gA~~~GG~vi 71 (217)
.|+|||+. |+=.+.++...+.|-.||
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VI 33 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVI 33 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEE
Confidence 34666666 777777777777666554
No 130
>PLN02591 tryptophan synthase
Probab=40.76 E-value=1.3e+02 Score=26.28 Aligned_cols=45 Identities=24% Similarity=0.432 Sum_probs=28.4
Q ss_pred ccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHH-----HHHHhHHhcC
Q 027857 114 LPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLL-----ALFDNGVQEG 163 (217)
Q Consensus 114 lpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~-----~~l~~~~~~g 163 (217)
|-.|. |++.+++.+.-.. ...+.|++++ +||+++. +|++.+.+.|
T Consensus 57 L~~G~-~~~~~~~~~~~~r-~~~~~p~ilm---~Y~N~i~~~G~~~F~~~~~~aG 106 (250)
T PLN02591 57 LEKGT-TLDSVISMLKEVA-PQLSCPIVLF---TYYNPILKRGIDKFMATIKEAG 106 (250)
T ss_pred HHcCC-CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhHHHHHHHHHHHcC
Confidence 33444 7778887775433 2356899887 4777554 4667666655
No 131
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=40.74 E-value=64 Score=23.78 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCeeEEccC---CCCcHHHHHHHHHHHhcCCCCCcEE
Q 027857 99 ERKAAMAQEAEAFIALPG---GYGTMEELLEMITWSQLGIHKKPVG 141 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpG---G~GTL~El~e~~t~~qlg~~~kPii 141 (217)
.+...++..||+++.||| .-|..-|+..+-.+ ++||+
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~l------Gl~V~ 90 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAKKL------GLPVI 90 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHC------CCeEe
Confidence 344456669999999998 67888888877654 66664
No 132
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=40.70 E-value=1.8e+02 Score=25.90 Aligned_cols=73 Identities=16% Similarity=0.375 Sum_probs=40.0
Q ss_pred HHHHHHHCCCeEEE---cCCC-cCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCe
Q 027857 35 LGNELVRRKINLVY---GGGS-VGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEA 110 (217)
Q Consensus 35 lG~~La~~g~~lv~---GGg~-~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda 110 (217)
+-+.|-..+..+|+ |||. +|.--.+++-+.+.|-.+++|.+.... .|.. .....-...-..|.+.+|.
T Consensus 78 I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~-------~~~~nA~~~l~~L~~~~d~ 149 (304)
T cd02201 78 IKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGK-------KRMRQAEEGLEELRKHVDT 149 (304)
T ss_pred HHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccch-------hHHHHHHHHHHHHHHhCCE
Confidence 33444445666665 4443 466666778888888888888653221 1110 1011112334455677888
Q ss_pred eEEcc
Q 027857 111 FIALP 115 (217)
Q Consensus 111 ~Ivlp 115 (217)
+|+++
T Consensus 150 ~ivid 154 (304)
T cd02201 150 LIVIP 154 (304)
T ss_pred EEEEe
Confidence 88776
No 133
>PRK05723 flavodoxin; Provisional
Probab=40.65 E-value=47 Score=26.56 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
++|+|+.+|..++.+ +.|++|.+.|.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 468898888887443 457888888888888763
No 134
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=40.56 E-value=57 Score=27.31 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=30.3
Q ss_pred cceEEEEcCCCCCCC-hHHHHHHHHHHHHHHHCCCeE-EEcC
Q 027857 11 FKRVCVFCGSHSGNR-RVFSDAALELGNELVRRKINL-VYGG 50 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~-~~~~~~A~~lG~~La~~g~~l-v~GG 50 (217)
|++|+|.|.-..++. --|...+++|+..|+++|+.+ ||.-
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~ 42 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCR 42 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEc
Confidence 679999997666432 346889999999999998875 5533
No 135
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=40.41 E-value=2.7e+02 Score=24.85 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=29.4
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
+...|+|+-. .. .++-|.+...-+.+.+.++|+.++-.-..
T Consensus 57 ~s~~Ig~i~p-~~-~~~~~~~i~~gi~~~~~~~gy~~~l~~~~ 97 (333)
T COG1609 57 RTKTIGLVVP-DI-TNPFFAEILKGIEEAAREAGYSLLLANTD 97 (333)
T ss_pred CCCEEEEEeC-CC-CCchHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 4567888875 22 23777788888888888888888776655
No 136
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=40.12 E-value=2.6e+02 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=20.0
Q ss_pred CCCeEEEcCCCcCHHHHHHHHHHHcCCe-EEEEe
Q 027857 42 RKINLVYGGGSVGLMGLISQTVYAGGCH-VLGII 74 (217)
Q Consensus 42 ~g~~lv~GGg~~GlM~a~~~gA~~~GG~-viGV~ 74 (217)
....+|+|+|++|++ +..-|+..|.. ++.+.
T Consensus 177 g~~VlV~G~g~vG~~--a~~~ak~~G~~~Vi~~~ 208 (358)
T TIGR03451 177 GDSVAVIGCGGVGDA--AIAGAALAGASKIIAVD 208 (358)
T ss_pred CCEEEEECCCHHHHH--HHHHHHHcCCCeEEEEc
Confidence 356778887655544 45567777764 77773
No 137
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=40.12 E-value=3e+02 Score=25.32 Aligned_cols=32 Identities=34% Similarity=0.340 Sum_probs=21.6
Q ss_pred HHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 102 AAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
...+..||++|.-.| .-| .| ++.+ ++|.|++-
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E---~a~l------g~P~Ilip 322 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQ---AVGL------GKPVIQLP 322 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HH---HHHh------CCCEEEEe
Confidence 346788998888866 233 33 3333 89999986
No 138
>PRK08862 short chain dehydrogenase; Provisional
Probab=40.10 E-value=1.5e+02 Score=24.74 Aligned_cols=53 Identities=8% Similarity=-0.024 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLG 72 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viG 72 (217)
+++.|.|+++ + ..+.+++.|+++|+.++.-+....-.+.+.+...+.++.+..
T Consensus 6 k~~lVtGas~-G-------IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~ 58 (227)
T PRK08862 6 SIILITSAGS-V-------LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYS 58 (227)
T ss_pred eEEEEECCcc-H-------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEE
Confidence 4566776655 2 345677777888888766554433333333333344444433
No 139
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=40.04 E-value=3.2e+02 Score=25.67 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=82.5
Q ss_pred CCCCcceEEEEcCCCCC-CChHHHHHHHHHHHHHHH---CCCeEEEcCCC-cCHHHHHHHHHHH--cCC----eEEEEec
Q 027857 7 TGSNFKRVCVFCGSHSG-NRRVFSDAALELGNELVR---RKINLVYGGGS-VGLMGLISQTVYA--GGC----HVLGIIP 75 (217)
Q Consensus 7 ~~~~~~~I~Vfggs~~~-~~~~~~~~A~~lG~~La~---~g~~lv~GGg~-~GlM~a~~~gA~~--~GG----~viGV~P 75 (217)
..+|.+++-|--..... .+..| --||..+.+ .++.+++|... ...-..=+-+|.- .|+ ++.||+|
T Consensus 177 ~EnR~~~~~v~v~~~~~~d~~~~----~~LG~~iG~~~~~~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~GvTP 252 (400)
T PF04412_consen 177 DENRRATILVEVEAPPEEDDADW----GLLGYLIGKKVGDRIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGVTP 252 (400)
T ss_pred ccCCCCeEEEEeCCCCCcCcchH----HHHHHHHHHhcCCCcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCCCC
Confidence 56677788877765544 33344 356666654 48999999877 4554444444433 243 6789999
Q ss_pred CcccCCccCCCCcceEEec--CCHH-HHHHHH-HHhcC-eeEEccCCCCcHHHHHHHHHHHhcCC--CCCcEEEEeCCCc
Q 027857 76 KALMPLEISGETVGEVRTV--SDMH-ERKAAM-AQEAE-AFIALPGGYGTMEELLEMITWSQLGI--HKKPVGLLNVDGY 148 (217)
Q Consensus 76 ~~~~~~e~~~~~~~~~i~~--~~m~-~Rk~~~-~~~sd-a~IvlpGG~GTL~El~e~~t~~qlg~--~~kPiilln~~gf 148 (217)
+.-...+..... .+.+.. +++. .++.+- ....+ -+|+|+-=-=|++|+.++..+..-.. .++|+++.-....
T Consensus 253 Ea~~~~~a~~~~-~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~v 331 (400)
T PF04412_consen 253 EAPTLEAAFGGK-AERITITDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRAV 331 (400)
T ss_pred CCCcchhhhcCC-ceEEEeCHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHHH
Confidence 764221111111 233322 2332 222220 11122 25556555668999999888776554 4688888755434
Q ss_pred chHHHH--HHHhHHhcC
Q 027857 149 YNSLLA--LFDNGVQEG 163 (217)
Q Consensus 149 ~~~l~~--~l~~~~~~g 163 (217)
++...+ +++.+.+.|
T Consensus 332 ~~~a~~~G~~~~le~~G 348 (400)
T PF04412_consen 332 YELAERMGYVERLEKAG 348 (400)
T ss_pred HHHHHhCCHHHHHHHcC
Confidence 444333 344444443
No 140
>PRK13057 putative lipid kinase; Reviewed
Probab=40.03 E-value=62 Score=28.21 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCc
Q 027857 31 AALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKA 77 (217)
Q Consensus 31 ~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~ 77 (217)
.|.++.+.+.+.--.|+..||. |-...++.+.... +..+||+|.-
T Consensus 39 ~a~~~~~~~~~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~G 83 (287)
T PRK13057 39 DLSEVIEAYADGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPLG 83 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECCC
Confidence 3444555533332356777888 9999999988765 4579999843
No 141
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=39.89 E-value=68 Score=27.59 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=35.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
|++++|+|--+.+ ..|++.+++.||.++.|+.. --++....+...+..++|.
T Consensus 1 m~~~~i~GtGniG---------~alA~~~a~ag~eV~igs~r--~~~~~~a~a~~l~~~i~~~ 52 (211)
T COG2085 1 MMIIAIIGTGNIG---------SALALRLAKAGHEVIIGSSR--GPKALAAAAAALGPLITGG 52 (211)
T ss_pred CcEEEEeccChHH---------HHHHHHHHhCCCeEEEecCC--ChhHHHHHHHhhccccccC
Confidence 5678888754443 56899999999999998765 3444454455555554443
No 142
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=39.88 E-value=47 Score=30.64 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=27.2
Q ss_pred CeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 109 EAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 109 da~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
|++||.= |.-||+|-+..+.++--. +|||||.+.
T Consensus 102 dGvVItH-GTDTmeeTA~~L~l~l~~--~kPVVlTGa 135 (351)
T COG0252 102 DGVVITH-GTDTMEETAFFLSLTLNT--PKPVVLTGA 135 (351)
T ss_pred CeEEEeC-CCchHHHHHHHHHHHhcC--CCCEEEeCC
Confidence 7777766 589999999998875533 899999874
No 143
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.72 E-value=37 Score=30.75 Aligned_cols=29 Identities=38% Similarity=0.558 Sum_probs=24.5
Q ss_pred HCCCeEEEcCCCcCHHHHHHHHHHHcCCeE
Q 027857 41 RRKINLVYGGGSVGLMGLISQTVYAGGCHV 70 (217)
Q Consensus 41 ~~g~~lv~GGg~~GlM~a~~~gA~~~GG~v 70 (217)
+.+..|+||||. |+=++.+....+.|.++
T Consensus 37 ~g~~vLITGgg~-GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 37 SGEIVLITGGGS-GLGRLIALEFAKRGAKL 65 (300)
T ss_pred cCCEEEEeCCCc-hHHHHHHHHHHHhCCeE
Confidence 467889999998 99999999988888754
No 144
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=39.66 E-value=47 Score=25.29 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=22.1
Q ss_pred CCCCCCCCCcceEEEEcCCCCCC------ChHHHHHHHHHHHHHHHCCCeEE
Q 027857 2 EEEGYTGSNFKRVCVFCGSHSGN------RRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 2 ~~~~~~~~~~~~I~Vfggs~~~~------~~~~~~~A~~lG~~La~~g~~lv 47 (217)
+..|..+.+ ..+.||||++.-. .+.-.+-....=+.|+++|+.|+
T Consensus 31 ~~~Ga~~~~-l~aklfGGa~m~~~~~~~~~~IG~rNv~~a~~~L~~~gi~I~ 81 (114)
T PF03975_consen 31 EKRGARPSR-LEAKLFGGANMFPGMNSSSFNIGERNVEAARELLAEEGIPIV 81 (114)
T ss_dssp HTTT--GGG--EEEEEE----S------SS-HHHHHHHHHHHHHHHTT--EE
T ss_pred HHcCCCHHH-eEEEEeeCcccccccccccCCHHHHHHHHHHHHHHHCCCcEE
Confidence 445655444 4899999998754 12334455555566889999997
No 145
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=39.60 E-value=70 Score=29.00 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=18.1
Q ss_pred eEEecCCHHHHHHHHHHhcCeeEEccC
Q 027857 90 EVRTVSDMHERKAAMAQEAEAFIALPG 116 (217)
Q Consensus 90 ~~i~~~~m~~Rk~~~~~~sda~IvlpG 116 (217)
+-++-+|+..-+-.-.-.+|.+|+|..
T Consensus 208 eAVIDKDlasalLA~~i~AD~liILTd 234 (312)
T COG0549 208 EAVIDKDLASALLAEQIDADLLIILTD 234 (312)
T ss_pred eEEEccHHHHHHHHHHhcCCEEEEEec
Confidence 556667775444333456999999976
No 146
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=39.35 E-value=56 Score=25.10 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=22.7
Q ss_pred CeEEEcCCCcCHHHHHHHHHHHcCCeEEEEe
Q 027857 44 INLVYGGGSVGLMGLISQTVYAGGCHVLGII 74 (217)
Q Consensus 44 ~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~ 74 (217)
..||+||+. |+=.++++...+.|+.++.++
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 357888887 888888888888877555554
No 147
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=39.14 E-value=94 Score=26.03 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=37.8
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHH
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKEL 182 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 182 (217)
.+...||++|.-...-|.-.=+.|++.. ++|+|.-+..+. .+++++ ...+.-.+|++++
T Consensus 264 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~------g~PvI~~~~~~~----~e~~~~-----------~g~~~~~~~~~~l 322 (365)
T cd03807 264 ALLNALDVFVLSSLSEGFPNVLLEAMAC------GLPVVATDVGDN----AELVGD-----------TGFLVPPGDPEAL 322 (365)
T ss_pred HHHHhCCEEEeCCccccCCcHHHHHHhc------CCCEEEcCCCCh----HHHhhc-----------CCEEeCCCCHHHH
Confidence 4568899877532211111225666654 899998765432 222222 2234445688888
Q ss_pred HHHHHhhc
Q 027857 183 LEKMEQYT 190 (217)
Q Consensus 183 ~~~l~~~~ 190 (217)
.+.+.+..
T Consensus 323 ~~~i~~l~ 330 (365)
T cd03807 323 AEAIEALL 330 (365)
T ss_pred HHHHHHHH
Confidence 88887654
No 148
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=38.90 E-value=63 Score=22.85 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCCeEEE
Q 027857 32 ALELGNELVRRKINLVY 48 (217)
Q Consensus 32 A~~lG~~La~~g~~lv~ 48 (217)
=.++++.|+++|+.++.
T Consensus 32 y~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 32 YAHLAEFLAEQGYAVFA 48 (79)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 36789999999999885
No 149
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=38.78 E-value=38 Score=25.82 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
|+|+|.+|-.....+.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 456666654444556667899999999999999887
No 150
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=38.66 E-value=1.2e+02 Score=25.10 Aligned_cols=86 Identities=27% Similarity=0.247 Sum_probs=45.3
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHh-cCCCCCcEEEEeCCCcc------hHHHHHHH-hHHhcCCCCccccccEE-
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQ-LGIHKKPVGLLNVDGYY------NSLLALFD-NGVQEGFIKPSARQIII- 174 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~q-lg~~~kPiilln~~gf~------~~l~~~l~-~~~~~gfi~~~~~~~i~- 174 (217)
+.+...+.|+|+||. |...+++.+.-.. .++.-+.|.+++.+.+| +.-..+++ .+.+.--|++.....+.
T Consensus 17 i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~ 95 (199)
T PF01182_consen 17 IAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDG 95 (199)
T ss_dssp HHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSST
T ss_pred HHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCCC
Confidence 356688999999986 6667777776533 22334678787776666 11122222 22222223332222222
Q ss_pred EcCCHHHHHHHHHhhc
Q 027857 175 SAPSAKELLEKMEQYT 190 (217)
Q Consensus 175 ~~~d~ee~~~~l~~~~ 190 (217)
-.+|+++..+.+.+..
T Consensus 96 ~~~~~~~~~~~y~~~l 111 (199)
T PF01182_consen 96 EADDPEEAAERYEQEL 111 (199)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2467888777776543
No 151
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=38.56 E-value=2.4e+02 Score=23.69 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCeeEEccC-----CCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccE
Q 027857 99 ERKAAMAQEAEAFIALPG-----GYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQII 173 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpG-----G~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i 173 (217)
+....+...||++|.... |.+.-.=+.|++.. ++|++..+..+.-+-+. + .....+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~------G~pvi~~~~~~~~~~~~--------~-----~~~g~~ 346 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAA------GKPVLASVDGESAELVE--------E-----AGAGLV 346 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHC------CCcEEEecCCCchhhhc--------c-----CCcceE
Confidence 334456788998886532 33334446677764 89999987654322111 1 112233
Q ss_pred EEcCCHHHHHHHHHhhc
Q 027857 174 ISAPSAKELLEKMEQYT 190 (217)
Q Consensus 174 ~~~~d~ee~~~~l~~~~ 190 (217)
.-.+|++++.+.|.+..
T Consensus 347 ~~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 347 VPPGDPEALAAAILELL 363 (394)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 44458888888887764
No 152
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=38.44 E-value=1.3e+02 Score=26.91 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCeeEEc--cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEc
Q 027857 99 ERKAAMAQEAEAFIAL--PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISA 176 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivl--pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 176 (217)
+....+...||++|.. +.|+|. =+.|+++. ++|||..+..|. .++++ .....++.-.
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA~------G~PVIas~~~g~----~e~i~---------~~~~G~lv~~ 350 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMAC------GCLVVGSDTAPV----REVIT---------DGENGLLVDF 350 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHHC------CCCEEEcCCCCc----hhhcc---------cCCceEEcCC
Confidence 3344566889998864 444442 25677764 999998876532 22221 1122333335
Q ss_pred CCHHHHHHHHHhhc
Q 027857 177 PSAKELLEKMEQYT 190 (217)
Q Consensus 177 ~d~ee~~~~l~~~~ 190 (217)
+|++++.+.|.+..
T Consensus 351 ~d~~~la~~i~~ll 364 (396)
T cd03818 351 FDPDALAAAVIELL 364 (396)
T ss_pred CCHHHHHHHHHHHH
Confidence 68888888887654
No 153
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=38.37 E-value=1.7e+02 Score=26.46 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCeeEEc---cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEE-
Q 027857 99 ERKAAMAQEAEAFIAL---PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIII- 174 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivl---pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~- 174 (217)
+....+...||++|.- ..|+|.. +.|++.. ++||+..+..|.- +++ .+ ....++.
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma~------G~PVI~s~~gg~~----Eiv----~~-----~~~G~~l~ 326 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMAA------GKPVLASTKGGIT----EFV----LE-----GITGYHLA 326 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHHc------CCCEEEeCCCCcH----hhc----cc-----CCceEEEe
Confidence 3445567899998873 3455543 5677764 8999998765431 211 11 1112222
Q ss_pred EcCCHHHHHHHHHhhc
Q 027857 175 SAPSAKELLEKMEQYT 190 (217)
Q Consensus 175 ~~~d~ee~~~~l~~~~ 190 (217)
-..|++++.+.|....
T Consensus 327 ~~~d~~~la~~I~~ll 342 (380)
T PRK15484 327 EPMTSDSIISDINRTL 342 (380)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2458888888776654
No 154
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=38.07 E-value=3.2e+02 Score=24.98 Aligned_cols=131 Identities=17% Similarity=0.280 Sum_probs=71.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHH---HHHHHHHHcCCeE-EEEecCcc------c-CC-cc--CCC
Q 027857 21 HSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMG---LISQTVYAGGCHV-LGIIPKAL------M-PL-EI--SGE 86 (217)
Q Consensus 21 ~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~---a~~~gA~~~GG~v-iGV~P~~~------~-~~-e~--~~~ 86 (217)
...||...... .+.+-..|+.|..+|. |++.|. .+.+.+++..|.. ++|+.-.- + |. +- ..+
T Consensus 129 ~idND~Tl~~L-~k~Als~A~AGADiVA---PSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap 204 (314)
T cd00384 129 YVDNDATLELL-AKIAVSHAEAGADIVA---PSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAP 204 (314)
T ss_pred cCccHHHHHHH-HHHHHHHHHcCCCeee---cccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCC
Confidence 34455555433 4567778999999994 557775 4566777777754 66653211 0 10 00 011
Q ss_pred Ccce-EEecCCHHHHHHH-------HHHhcCeeEEccCCCCcHHHHHHHHHHHhcC-CCCCcEEEEeCCCcchHHHHHHH
Q 027857 87 TVGE-VRTVSDMHERKAA-------MAQEAEAFIALPGGYGTMEELLEMITWSQLG-IHKKPVGLLNVDGYYNSLLALFD 157 (217)
Q Consensus 87 ~~~~-~i~~~~m~~Rk~~-------~~~~sda~IvlpGG~GTL~El~e~~t~~qlg-~~~kPiilln~~gf~~~l~~~l~ 157 (217)
.+.+ --.--+...|+.. +.+-+|.+.|=||.. ...++. .+. ..+.|+..++.+|=|. .++
T Consensus 205 ~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~-----YLDIi~--~~k~~~~~PvaaYqVSGEYa----Mik 273 (314)
T cd00384 205 SFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALA-----YLDIIR--DVRERFDLPVAAYNVSGEYA----MIK 273 (314)
T ss_pred CCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch-----HHHHHH--HHHHhcCCCEEEEEccHHHH----HHH
Confidence 1111 0000111122222 234489999999954 222222 222 2489999999988664 445
Q ss_pred hHHhcCCCC
Q 027857 158 NGVQEGFIK 166 (217)
Q Consensus 158 ~~~~~gfi~ 166 (217)
...+.|.++
T Consensus 274 aAa~~G~id 282 (314)
T cd00384 274 AAAKNGWID 282 (314)
T ss_pred HHHHcCCcc
Confidence 566777765
No 155
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=37.83 E-value=1.6e+02 Score=24.76 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCC---C
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL--VYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISG---E 86 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l--v~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~---~ 86 (217)
+.|+|+=+... +.|.++++.|.+.|+.+ ||==.+ +..+++.+-..+.....+|.-. ....++.. +
T Consensus 9 ~iiaVir~~~~-------~~a~~~~~al~~gGi~~iEiT~~t~-~a~~~I~~l~~~~p~~~vGAGT--V~~~e~a~~a~~ 78 (196)
T PF01081_consen 9 KIIAVIRGDDP-------EDAVPIAEALIEGGIRAIEITLRTP-NALEAIEALRKEFPDLLVGAGT--VLTAEQAEAAIA 78 (196)
T ss_dssp SEEEEETTSSG-------GGHHHHHHHHHHTT--EEEEETTST-THHHHHHHHHHHHTTSEEEEES----SHHHHHHHHH
T ss_pred CEEEEEEcCCH-------HHHHHHHHHHHHCCCCEEEEecCCc-cHHHHHHHHHHHCCCCeeEEEe--ccCHHHHHHHHH
Confidence 45677643332 45678999999999988 454455 7788887777777888899831 21112111 1
Q ss_pred CcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHH
Q 027857 87 TVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITW 130 (217)
Q Consensus 87 ~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~ 130 (217)
.-.+.++.+.+...-....... .+.++|| .-|..|+..++.+
T Consensus 79 aGA~FivSP~~~~~v~~~~~~~-~i~~iPG-~~TptEi~~A~~~ 120 (196)
T PF01081_consen 79 AGAQFIVSPGFDPEVIEYAREY-GIPYIPG-VMTPTEIMQALEA 120 (196)
T ss_dssp HT-SEEEESS--HHHHHHHHHH-TSEEEEE-ESSHHHHHHHHHT
T ss_pred cCCCEEECCCCCHHHHHHHHHc-CCcccCC-cCCHHHHHHHHHC
Confidence 1135677777765544444433 4677887 5699999988864
No 156
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=37.36 E-value=2e+02 Score=25.49 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=40.5
Q ss_pred EEecCCH-HHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccc
Q 027857 91 VRTVSDM-HERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSA 169 (217)
Q Consensus 91 ~i~~~~m-~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~ 169 (217)
+.+.+.+ ..+...+...||++|. +.| +. +.|++.+ ++|++.....+-+..+ ...|
T Consensus 257 v~~~~~~~~~~~~~~l~~ad~vv~-~Sg--~~--~~EA~a~------g~PvI~~~~~~~~~e~-------~~~g------ 312 (365)
T TIGR00236 257 VHLIEPLEYLDFLNLAANSHLILT-DSG--GV--QEEAPSL------GKPVLVLRDTTERPET-------VEAG------ 312 (365)
T ss_pred EEEECCCChHHHHHHHHhCCEEEE-CCh--hH--HHHHHHc------CCCEEECCCCCCChHH-------HhcC------
Confidence 4444434 3334456677887654 432 23 3556654 8999987322222211 1111
Q ss_pred cccEEEcCCHHHHHHHHHhhc
Q 027857 170 RQIIISAPSAKELLEKMEQYT 190 (217)
Q Consensus 170 ~~~i~~~~d~ee~~~~l~~~~ 190 (217)
..+.+..|++++.+.+.+..
T Consensus 313 -~~~lv~~d~~~i~~ai~~ll 332 (365)
T TIGR00236 313 -TNKLVGTDKENITKAAKRLL 332 (365)
T ss_pred -ceEEeCCCHHHHHHHHHHHH
Confidence 12334579999988887764
No 157
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=37.00 E-value=1.5e+02 Score=23.51 Aligned_cols=79 Identities=19% Similarity=0.163 Sum_probs=50.2
Q ss_pred HHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCC
Q 027857 59 ISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKK 138 (217)
Q Consensus 59 ~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~k 138 (217)
...++.+.||.++.+-|....- . .-.++.+=-+.|-..+|++|+=--.-++++|+.+.. ..
T Consensus 57 Fe~A~~~LGg~~i~~~~~~s~~---~--------k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~v 117 (142)
T PF02729_consen 57 FEAAANRLGGHVIYLDPSTSSL---G--------KGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SV 117 (142)
T ss_dssp HHHHHHHTTCEEEEEETTTSST---T--------TSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SS
T ss_pred HHHhhhcceeEEEEECcccccC---c--------CCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cC
Confidence 3456677899999996543211 0 012344444578888999999888888988887544 68
Q ss_pred cEEEEeCCCcchHHHHHHH
Q 027857 139 PVGLLNVDGYYNSLLALFD 157 (217)
Q Consensus 139 Piilln~~gf~~~l~~~l~ 157 (217)
|||=... ..+=|--.+++
T Consensus 118 PVINa~~-~~~HPtQaL~D 135 (142)
T PF02729_consen 118 PVINAGD-DHEHPTQALAD 135 (142)
T ss_dssp EEEEEEE-SSBSHHHHHHH
T ss_pred CeEcCcC-CCCChHHHHHH
Confidence 9984433 34445544444
No 158
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=36.84 E-value=1.2e+02 Score=25.17 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHH-CCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEe-c-CcccCC-c-cCCCCc--ceEE---ecCC
Q 027857 27 VFSDAALELGNELVR-RKINLVYGGGSVGLMGLISQTVYAGGCHVLGII-P-KALMPL-E-ISGETV--GEVR---TVSD 96 (217)
Q Consensus 27 ~~~~~A~~lG~~La~-~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~-P-~~~~~~-e-~~~~~~--~~~i---~~~~ 96 (217)
.|.+.-.++-+.+.. .+..|-||||. +|-.-++.++...|.||=+- | +.+..+ . ....++ +.-. +.+-
T Consensus 56 ~FR~~E~~vl~~l~~~~~~ViaTGGG~--v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L 133 (172)
T COG0703 56 GFRRLETEVLKELLEEDNAVIATGGGA--VLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEEL 133 (172)
T ss_pred HHHHHHHHHHHHHhhcCCeEEECCCcc--ccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHH
Confidence 344444444444444 45888888886 78788888998888666552 1 111110 0 001111 1111 2345
Q ss_pred HHHHHHHHHHhcCeeEEccCCC
Q 027857 97 MHERKAAMAQEAEAFIALPGGY 118 (217)
Q Consensus 97 m~~Rk~~~~~~sda~IvlpGG~ 118 (217)
|.+|+.+..+.||.++--....
T Consensus 134 ~~~R~~~Y~e~a~~~~~~~~~~ 155 (172)
T COG0703 134 LEERQPLYREVADFIIDTDDRS 155 (172)
T ss_pred HHHHHHHHHHhCcEEecCCCCc
Confidence 6889998877777555444433
No 159
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=36.58 E-value=82 Score=29.60 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=34.9
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC-----CcchHHHHHHHh
Q 027857 108 AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD-----GYYNSLLALFDN 158 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~-----gf~~~l~~~l~~ 158 (217)
.|+|||.=| .-||+|-+.++.++--. .+|||||.+.- --.|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 689888875 89999999888764322 38999998741 244666666553
No 160
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=36.52 E-value=60 Score=25.52 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=24.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
|++|+||-+|..++.. ..|+.+.+.|...++.+.
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~~ 34 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEVD 34 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceEE
Confidence 6789999989887543 456777788877776663
No 161
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=36.43 E-value=1.3e+02 Score=25.78 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=41.0
Q ss_pred HHHHHHhcCeeEEcc---CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 101 KAAMAQEAEAFIALP---GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 101 k~~~~~~sda~Ivlp---GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
...+...||++|... -|+|+ =++|++.. ++|+|..+..+. ..+.. + .....+.-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a~------G~PvI~~~~~~~-~e~i~---~---------~~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQAM------GRPVIASDHGGA-RETVR---P---------GETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHhc------CCCEEEcCCCCc-HHHHh---C---------CCceEEeCCC
Confidence 344567899887643 34553 36777765 899999876542 32221 1 1123444567
Q ss_pred CHHHHHHHHHh
Q 027857 178 SAKELLEKMEQ 188 (217)
Q Consensus 178 d~ee~~~~l~~ 188 (217)
|++++.+.|..
T Consensus 316 ~~~~l~~~i~~ 326 (355)
T cd03819 316 DAEALAQALDQ 326 (355)
T ss_pred CHHHHHHHHHH
Confidence 89988888853
No 162
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=36.28 E-value=2e+02 Score=24.07 Aligned_cols=111 Identities=13% Similarity=0.180 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeE----EEEecCcccCCccCCCCcc---eEEecCCHH
Q 027857 26 RVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHV----LGIIPKALMPLEISGETVG---EVRTVSDMH 98 (217)
Q Consensus 26 ~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~v----iGV~P~~~~~~e~~~~~~~---~~i~~~~m~ 98 (217)
+...+.+..+.+.+.+.+..+++|-|.++.+.. .-+.+...+. .|+ |......+ ....+ .-.-.+..+
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~--~~a~~l~~~~~~~r~gl-~a~~l~~d--~~~~ta~and~~~~~~f 99 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQ--HFAASMINRFETERPSL-PAIALNTD--NVVLTAIANDRLHDEVY 99 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHH--HHHHHHhccccccCCCc-ceEEecCc--HHHHHHHhccccHHHHH
Confidence 456677777777787888888998887554322 2232221100 111 11000000 00000 000011122
Q ss_pred HH-HHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 99 ER-KAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 99 ~R-k~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
.| -+.+....|.+|++.+ .|.-.++.+++...+ ..+-|+|.+-
T Consensus 100 ~~ql~~~~~~gDvli~iS~-SG~s~~v~~a~~~Ak--~~G~~vI~IT 143 (196)
T PRK10886 100 AKQVRALGHAGDVLLAIST-RGNSRDIVKAVEAAV--TRDMTIVALT 143 (196)
T ss_pred HHHHHHcCCCCCEEEEEeC-CCCCHHHHHHHHHHH--HCCCEEEEEe
Confidence 22 2334456788888876 444455666665543 3467888774
No 163
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=36.22 E-value=2e+02 Score=27.16 Aligned_cols=106 Identities=15% Similarity=0.210 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHC---------CCeEEEcCCCcC---HHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCH
Q 027857 30 DAALELGNELVRR---------KINLVYGGGSVG---LMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDM 97 (217)
Q Consensus 30 ~~A~~lG~~La~~---------g~~lv~GGg~~G---lM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m 97 (217)
+.|+..++.+|+. +..++||+-.+| |+.|++..+.+.|.+++-+....+.. + +.+.+....+
T Consensus 120 ~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~-----~~~~l~~~~~ 193 (445)
T PRK12422 120 DLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-H-----LVSAIRSGEM 193 (445)
T ss_pred HHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-H-----HHHHHhcchH
Confidence 3455556666541 345788765544 88899988888777776553321110 0 0000101122
Q ss_pred HHHHHHHHHhcCeeEE-----ccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 98 HERKAAMAQEAEAFIA-----LPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 98 ~~Rk~~~~~~sda~Iv-----lpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
. +-+......|.+++ +.|--.|.+|++.++.... ..++++++..
T Consensus 194 ~-~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts 242 (445)
T PRK12422 194 Q-RFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISS 242 (445)
T ss_pred H-HHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEec
Confidence 1 12222355676665 4555568888887764322 2357777754
No 164
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=36.03 E-value=45 Score=25.98 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCeeEEcc-----CCCCcHHHHHHHHHHHhcCCCCCcEEEE
Q 027857 99 ERKAAMAQEAEAFIALP-----GGYGTMEELLEMITWSQLGIHKKPVGLL 143 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp-----GG~GTL~El~e~~t~~qlg~~~kPiill 143 (217)
+=.+.+++.+|++|++. =..|+--|+-.+.++ ++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~------~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEM------GMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHT------T-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHHc------CCeEEEe
Confidence 44566789999999985 367899998888875 8999874
No 165
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=35.99 E-value=1e+02 Score=29.07 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=39.8
Q ss_pred CeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHH
Q 027857 44 INLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEE 123 (217)
Q Consensus 44 ~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~E 123 (217)
..+|.|.|++|.. +++.+...|.+|+.+-.+.....+.....+ .+.++. . .++.+|.+|...|..+.+++
T Consensus 197 ~VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 197 TVVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHHHH
Confidence 3458888887765 455666778888887322111111111111 122342 2 35779999999988777764
No 166
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=35.95 E-value=1.4e+02 Score=24.89 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=42.5
Q ss_pred HHHHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 100 RKAAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 100 Rk~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
....+...||++|... .|+|+- +.|++.. ++|++.-+..+. .+++++ .....+.-.+
T Consensus 271 ~~~~~~~~ad~~i~~~~~~~~~~~--~~Ea~~~------G~pvI~~~~~~~----~~~~~~---------~~~g~~~~~~ 329 (377)
T cd03798 271 EVPAYYAAADVFVLPSLREGFGLV--LLEAMAC------GLPVVATDVGGI----PEIITD---------GENGLLVPPG 329 (377)
T ss_pred HHHHHHHhcCeeecchhhccCChH--HHHHHhc------CCCEEEecCCCh----HHHhcC---------CcceeEECCC
Confidence 3445677899877643 333432 5666654 899988765432 222211 1112455567
Q ss_pred CHHHHHHHHHhhcCC
Q 027857 178 SAKELLEKMEQYTPA 192 (217)
Q Consensus 178 d~ee~~~~l~~~~~~ 192 (217)
|++++.+.|.+....
T Consensus 330 ~~~~l~~~i~~~~~~ 344 (377)
T cd03798 330 DPEALAEAILRLLAD 344 (377)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999988888776543
No 167
>PLN02271 serine hydroxymethyltransferase
Probab=35.93 E-value=78 Score=31.32 Aligned_cols=42 Identities=33% Similarity=0.394 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCC----------cCHHHHHHHHHHHcCCeE
Q 027857 29 SDAALELGNELVRRKINLVYGGGS----------VGLMGLISQTVYAGGCHV 70 (217)
Q Consensus 29 ~~~A~~lG~~La~~g~~lv~GGg~----------~GlM~a~~~gA~~~GG~v 70 (217)
.+.|+.|++.|.++|+.||+||-. .|+.+..+.-+++.-|.+
T Consensus 441 v~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~ 492 (586)
T PLN02271 441 KKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHIT 492 (586)
T ss_pred HHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeE
Confidence 345777888899999999998842 477788888888755533
No 168
>PRK05920 aromatic acid decarboxylase; Validated
Probab=35.81 E-value=69 Score=27.22 Aligned_cols=100 Identities=10% Similarity=0.110 Sum_probs=56.7
Q ss_pred hcCeeEEccCCCCcHHHHHHHHHHHhc-------CCCCCcEEEEeCCCcchH-HHHHHHhHHhcCCC-CccccccEEEcC
Q 027857 107 EAEAFIALPGGYGTMEELLEMITWSQL-------GIHKKPVGLLNVDGYYNS-LLALFDNGVQEGFI-KPSARQIIISAP 177 (217)
Q Consensus 107 ~sda~IvlpGG~GTL~El~e~~t~~ql-------g~~~kPiilln~~gf~~~-l~~~l~~~~~~gfi-~~~~~~~i~~~~ 177 (217)
.+|++||.|--.+|+.-+..=++-.-+ =..++|+++.=..-+..+ ..+-++.+.+.|.. =+.......--+
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~p~ 172 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIILPAIPAFYHKPQ 172 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCCcccccCCCC
Confidence 689999999999999877532211111 124789998754322222 23345666666643 223334455566
Q ss_pred CHHHHHHHHHhhc--CCC-CCCCCCcccccccc
Q 027857 178 SAKELLEKMEQYT--PAH-EHVAPHESWQMEQL 207 (217)
Q Consensus 178 d~ee~~~~l~~~~--~~~-~~~~~~~~w~~~~~ 207 (217)
+.+|.++++-.-. ... ..+.+ -+|..+++
T Consensus 173 ~~~~~~~f~~~~~l~~lg~~~~~~-~~w~~~~~ 204 (204)
T PRK05920 173 TIDDLVDFVVARILDLLGIDLDLI-KRWGGPKQ 204 (204)
T ss_pred CHHHHHHHHHHHHHHhcCCCCccc-cccCCCCC
Confidence 7789888885422 111 11222 36987653
No 169
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=35.72 E-value=1.1e+02 Score=25.88 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=37.8
Q ss_pred HHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCH
Q 027857 102 AAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSA 179 (217)
Q Consensus 102 ~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 179 (217)
..+...||++|.-. .|+|. =++|+++. ++|++..+..+.- +.++ ......+.-.+|.
T Consensus 261 ~~~~~~~d~~l~~s~~e~~~~--~~lEa~a~------g~PvI~~~~~~~~----~~i~---------~~~~g~~~~~~~~ 319 (364)
T cd03814 261 AAAYASADVFVFPSRTETFGL--VVLEAMAS------GLPVVAPDAGGPA----DIVT---------DGENGLLVEPGDA 319 (364)
T ss_pred HHHHHhCCEEEECcccccCCc--HHHHHHHc------CCCEEEcCCCCch----hhhc---------CCcceEEcCCCCH
Confidence 34667899877532 22232 25667764 8999987765422 2111 1122334445677
Q ss_pred HHHHHHHHhhc
Q 027857 180 KELLEKMEQYT 190 (217)
Q Consensus 180 ee~~~~l~~~~ 190 (217)
+++.+.|.+..
T Consensus 320 ~~l~~~i~~l~ 330 (364)
T cd03814 320 EAFAAALAALL 330 (364)
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 170
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=35.63 E-value=1.2e+02 Score=22.93 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=33.2
Q ss_pred EEecCCH--HHHHHHHH--HhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCc---EEEEeCCCcchHHHHHHHh
Q 027857 91 VRTVSDM--HERKAAMA--QEAEAFIALPGGYGTMEELLEMITWSQLGIHKKP---VGLLNVDGYYNSLLALFDN 158 (217)
Q Consensus 91 ~i~~~~m--~~Rk~~~~--~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kP---iilln~~gf~~~l~~~l~~ 158 (217)
++++.|. ..|+.+.. +..+.-++.. ||-+|+..++ +|| ++.+...||.+.+++.+++
T Consensus 37 VI~A~D~s~~~kkki~~~~~~~~vp~~~~---~t~~eLg~a~--------Gk~~~~~iai~d~g~a~~l~~~~~~ 100 (104)
T PRK05583 37 IIISNDISENSKNKFKNYCNKYNIPYIEG---YSKEELGNAI--------GRDEIKILGVKDKNMAKKLLKLWNE 100 (104)
T ss_pred EEEeCCCCHhHHHHHHHHHHHcCCCEEEe---cCHHHHHHHh--------CCCCeEEEEEeChHHHHHHHHHHHh
Confidence 4445555 23444432 3445555544 6889998777 443 3334456799888886653
No 171
>PRK06756 flavodoxin; Provisional
Probab=35.54 E-value=88 Score=24.24 Aligned_cols=76 Identities=11% Similarity=0.191 Sum_probs=35.3
Q ss_pred HhcCeeEEcc-C-CCCcHHH-HHHHHHHH-hcCCCCCcEEEEeCCC--cc--hHHHHHH-HhHHhcCCCCccccccEEEc
Q 027857 106 QEAEAFIALP-G-GYGTMEE-LLEMITWS-QLGIHKKPVGLLNVDG--YY--NSLLALF-DNGVQEGFIKPSARQIIISA 176 (217)
Q Consensus 106 ~~sda~Ivlp-G-G~GTL~E-l~e~~t~~-qlg~~~kPiilln~~g--f~--~~l~~~l-~~~~~~gfi~~~~~~~i~~~ 176 (217)
..+|++|+-. - +.|.+.. +...+... .....+||+.++...+ |+ ..-...| +.+.+.|+---...-.+...
T Consensus 48 ~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~ 127 (148)
T PRK06756 48 EQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELT 127 (148)
T ss_pred hcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecC
Confidence 4566655542 2 3354433 33333322 2334689999997632 22 2223333 34555554332223344555
Q ss_pred CCHHH
Q 027857 177 PSAKE 181 (217)
Q Consensus 177 ~d~ee 181 (217)
.+.++
T Consensus 128 p~~~d 132 (148)
T PRK06756 128 PEDED 132 (148)
T ss_pred CCHHH
Confidence 55444
No 172
>PRK09330 cell division protein FtsZ; Validated
Probab=35.51 E-value=1.9e+02 Score=27.07 Aligned_cols=55 Identities=13% Similarity=0.273 Sum_probs=32.5
Q ss_pred cCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEcc
Q 027857 53 VGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALP 115 (217)
Q Consensus 53 ~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~Ivlp 115 (217)
+|.=-.+++-|.+.|-.+++|.|..+.. |.. .....-..-.+.|.+.+|.+|++|
T Consensus 113 TGaapvIA~iake~g~ltvaVvt~PF~f-EG~-------~r~~nA~~gL~~L~~~~D~vIvi~ 167 (384)
T PRK09330 113 TGAAPVVAEIAKELGILTVAVVTKPFSF-EGK-------KRMKQAEEGIEELRKHVDTLIVIP 167 (384)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCccc-cch-------hHHHHHHHHHHHHHHHCCEEEEEe
Confidence 4666688899999999999997643211 110 000111233444567778777775
No 173
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=35.44 E-value=1e+02 Score=26.80 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=24.7
Q ss_pred eEEEcCCCcCHHHHHHHHHHHcCC-eEEEEecCc
Q 027857 45 NLVYGGGSVGLMGLISQTVYAGGC-HVLGIIPKA 77 (217)
Q Consensus 45 ~lv~GGg~~GlM~a~~~gA~~~GG-~viGV~P~~ 77 (217)
.||.-||. |-.-.++++...... ..+|++|.-
T Consensus 60 ~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 60 TVIAGGGD-GTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred EEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 56777888 999999999876433 479998843
No 174
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=35.29 E-value=2.1e+02 Score=24.68 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=39.8
Q ss_pred HHHHHhcCeeEEccCC-------CCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEE
Q 027857 102 AAMAQEAEAFIALPGG-------YGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIII 174 (217)
Q Consensus 102 ~~~~~~sda~IvlpGG-------~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~ 174 (217)
..+...||++|. |.- -|.-.=++|++.. ++||+.-+..+.- +++ .......+.
T Consensus 259 ~~~~~~ad~~v~-ps~~~~~~~~E~~~~~~~EA~a~------G~PvI~s~~~~~~----e~i---------~~~~~g~~~ 318 (367)
T cd05844 259 RELMRRARIFLQ-PSVTAPSGDAEGLPVVLLEAQAS------GVPVVATRHGGIP----EAV---------EDGETGLLV 318 (367)
T ss_pred HHHHHhCCEEEE-CcccCCCCCccCCchHHHHHHHc------CCCEEEeCCCCch----hhe---------ecCCeeEEE
Confidence 346788998765 321 1112236667764 8999988765422 111 111223333
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027857 175 SAPSAKELLEKMEQYTP 191 (217)
Q Consensus 175 ~~~d~ee~~~~l~~~~~ 191 (217)
-.+|++++.+.|.+...
T Consensus 319 ~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 319 PEGDVAALAAALGRLLA 335 (367)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 35688888888877643
No 175
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=35.13 E-value=2.4e+02 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=19.7
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCC-eEEEEe
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGC-HVLGII 74 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG-~viGV~ 74 (217)
...+|+|+|++|+|- ..-|+..|. +++.+.
T Consensus 171 ~~VlV~G~G~vG~~a--iqlak~~G~~~Vi~~~ 201 (343)
T PRK09880 171 KRVFVSGVGPIGCLI--VAAVKTLGAAEIVCAD 201 (343)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCcEEEEEe
Confidence 467788887766654 455666676 566663
No 176
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=34.95 E-value=1.4e+02 Score=25.79 Aligned_cols=40 Identities=33% Similarity=0.406 Sum_probs=22.8
Q ss_pred HHHhcCeeEEccCCCCcHHHHH--HHHHHHh-cCCCCCcEEEEeCCC
Q 027857 104 MAQEAEAFIALPGGYGTMEELL--EMITWSQ-LGIHKKPVGLLNVDG 147 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~--e~~t~~q-lg~~~kPiilln~~g 147 (217)
+...+|++++ +.||+.+-. .+....+ ...+++|+ +|+..+
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pv-VlDpv~ 93 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPV-VLDPVG 93 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCE-EECCcc
Confidence 4578899998 555655432 2222222 23457896 467654
No 177
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=34.94 E-value=1.2e+02 Score=26.69 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcC-CCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEc
Q 027857 98 HERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLG-IHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISA 176 (217)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg-~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 176 (217)
..|....++.+|.+|+ +||--.+.-+..+.+.- .++.|++++|.+... .+. .--+.+.
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~---------------~~~--~~~~~i~ 263 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTR---------------ADP--LLTLKVE 263 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCC---------------CCc--ceeEEEe
Confidence 3556666788998888 66665555443322222 357799999975211 010 1136778
Q ss_pred CCHHHHHHHHHhhc
Q 027857 177 PSAKELLEKMEQYT 190 (217)
Q Consensus 177 ~d~ee~~~~l~~~~ 190 (217)
.+..+++..|.+..
T Consensus 264 g~~~evL~~l~~~l 277 (285)
T PRK05333 264 ASCAQALAALVARL 277 (285)
T ss_pred CCHHHHHHHHHHHh
Confidence 89999999997654
No 178
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=34.73 E-value=1.1e+02 Score=26.77 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=40.0
Q ss_pred HHHHHHhcCeeEEc--cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCC
Q 027857 101 KAAMAQEAEAFIAL--PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS 178 (217)
Q Consensus 101 k~~~~~~sda~Ivl--pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 178 (217)
...+...||+++.- ..|+|.- ++|++.. ++|++..+..+ ..+++++ .....+.-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a~------G~Pvi~s~~~~----~~e~i~~---------~~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMAC------GLPVVATAVGG----PRDIVVD---------GVTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHhc------CCCEEECCCCC----HHHHccC---------CCCeEEeCCCC
Confidence 34456779988753 3445543 6777765 89998876543 2222221 11223333457
Q ss_pred HHHHHHHHHhhc
Q 027857 179 AKELLEKMEQYT 190 (217)
Q Consensus 179 ~ee~~~~l~~~~ 190 (217)
++++.+.|.+..
T Consensus 355 ~~~l~~~i~~l~ 366 (398)
T cd03800 355 PEALAAALRRLL 366 (398)
T ss_pred HHHHHHHHHHHH
Confidence 888888887654
No 179
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=34.62 E-value=3.3e+02 Score=24.12 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=75.5
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCc
Q 027857 9 SNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETV 88 (217)
Q Consensus 9 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~ 88 (217)
++.-++=|.+.++.--.+.+ ..-+-++.|.+.||.++-=. .=.-.+++.-.+.|.. .|+|-. .|... ..++
T Consensus 98 t~wiKlEVi~d~~tLlPD~~--etl~Aae~Lv~eGF~VlPY~---~dD~v~arrLee~Gca--avMPl~-aPIGS-g~G~ 168 (262)
T COG2022 98 TNWIKLEVIGDEKTLLPDPI--ETLKAAEQLVKEGFVVLPYT---TDDPVLARRLEEAGCA--AVMPLG-APIGS-GLGL 168 (262)
T ss_pred CCeEEEEEecCCcccCCChH--HHHHHHHHHHhCCCEEeecc---CCCHHHHHHHHhcCce--Eecccc-ccccC-CcCc
Confidence 34456778887776543343 23456788999999986422 3355678878888874 455521 12111 1111
Q ss_pred ceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 89 GEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 89 ~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
.. ..=.++|.+.+|.-|++--|+||.+...+++.| +---+|+|+
T Consensus 169 ----~n---~~~l~iiie~a~VPviVDAGiG~pSdAa~aMEl------G~DaVL~NT 212 (262)
T COG2022 169 ----QN---PYNLEIIIEEADVPVIVDAGIGTPSDAAQAMEL------GADAVLLNT 212 (262)
T ss_pred ----CC---HHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhc------ccceeehhh
Confidence 00 222567889999999999999999999999987 666778775
No 180
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.30 E-value=2.6e+02 Score=24.95 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=23.6
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027857 9 SNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL 46 (217)
Q Consensus 9 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l 46 (217)
+.+++|+|+.-.. ++...+.+.++.++|.++|+.+
T Consensus 3 ~~~~~i~iv~~~~---~~~~~~~~~~i~~~l~~~g~~v 37 (292)
T PRK03378 3 NHFKCIGIVGHPR---HPTALTTHEMLYHWLTSKGYEV 37 (292)
T ss_pred ccCCEEEEEEeCC---CHHHHHHHHHHHHHHHHCCCEE
Confidence 3477899996432 3566677888888886655433
No 181
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.20 E-value=2.2e+02 Score=25.39 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=16.8
Q ss_pred eEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 45 NLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 45 ~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
.+++-||. |-+=.+++.....+-.++||
T Consensus 60 ~vi~~GGD-GT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 60 LAIVLGGD-GTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred EEEEECCc-HHHHHHHHHhccCCCCEEEE
Confidence 44555667 77777777665544444444
No 182
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.17 E-value=2.4e+02 Score=22.34 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 33 LELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 33 ~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
.-+...|-.+||.+++-|-. =--+.+.+.|.+.+-.+||+
T Consensus 19 ~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILV 58 (134)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 45666777899999998887 77899999999999999999
No 183
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=33.86 E-value=35 Score=31.68 Aligned_cols=27 Identities=37% Similarity=0.578 Sum_probs=17.4
Q ss_pred eEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 45 NLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 45 ~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
.||.|||+.|++-|++ |.++|-+|+=|
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLi 28 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLI 28 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEE
Confidence 4799999988877664 45567777766
No 184
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=33.83 E-value=53 Score=26.83 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=17.1
Q ss_pred cceEEEEcCCCCCCChHHHHHHHH
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALE 34 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~ 34 (217)
|++|||||||=.+.+--+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 467999999987666555555544
No 185
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=33.70 E-value=1.9e+02 Score=26.26 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=19.5
Q ss_pred CeeEEccCCCCcHHHHHHHHHHHh
Q 027857 109 EAFIALPGGYGTMEELLEMITWSQ 132 (217)
Q Consensus 109 da~IvlpGG~GTL~El~e~~t~~q 132 (217)
-..|.+|--.|.|.++.+++....
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~~~ 330 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAEAR 330 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCC
Confidence 466779999999999999887543
No 186
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=33.66 E-value=1e+02 Score=27.64 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=25.6
Q ss_pred HhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 106 QEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
+..|+|||+= |.-||+|....+++.- ...+|||||.+
T Consensus 71 ~~~~GvVVtH-GTDTme~tA~~Ls~~l-~~l~kPVVlTG 107 (313)
T PF00710_consen 71 DDYDGVVVTH-GTDTMEETAFFLSLLL-DNLDKPVVLTG 107 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHHE-ES-SSEEEEE-
T ss_pred HhcCeEEEec-CchHHHHHHHHHHHHh-cCCCCCEEEeC
Confidence 3478888775 5899999998887632 22379999986
No 187
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=33.52 E-value=1.2e+02 Score=28.64 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=45.9
Q ss_pred CeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHH-
Q 027857 44 INLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTME- 122 (217)
Q Consensus 44 ~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~- 122 (217)
..+|.|.|++|. .+++-+...|.+|+.+-.+.....+.....+ + +.++. -..+.+|.+|...|-.++++
T Consensus 214 ~VlViG~G~IG~--~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~ 283 (425)
T PRK05476 214 VVVVAGYGDVGK--GCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITA 283 (425)
T ss_pred EEEEECCCHHHH--HHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHH
Confidence 356888887664 4666677778887776222111011011111 1 12342 23468999999887666665
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCCCc
Q 027857 123 ELLEMITWSQLGIHKKPVGLLNVDGY 148 (217)
Q Consensus 123 El~e~~t~~qlg~~~kPiilln~~gf 148 (217)
+.+..+ ++-.++.|...|
T Consensus 284 ~~~~~m--------K~GailiNvG~~ 301 (425)
T PRK05476 284 EHMEAM--------KDGAILANIGHF 301 (425)
T ss_pred HHHhcC--------CCCCEEEEcCCC
Confidence 344333 344566676433
No 188
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=33.52 E-value=73 Score=27.68 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=24.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVR 41 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~ 41 (217)
.++|||||||=...+--+...|+++.+.+.-
T Consensus 21 ~~~IgifGGSFdPiH~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 21 PRRIGILGGTFDPIHDGHLALARRFADVLDL 51 (243)
T ss_pred CceEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 3469999999887777778888887777653
No 189
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=33.33 E-value=60 Score=28.63 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHH-HHhHHhc
Q 027857 120 TMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLAL-FDNGVQE 162 (217)
Q Consensus 120 TL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~-l~~~~~~ 162 (217)
|++.+++.+.-..-.....|++++ +||+++... ++++.++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm---~Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLM---TYYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEE---E-HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEE---eeccHHhccchHHHHHH
No 190
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=33.04 E-value=3.6e+02 Score=24.10 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=24.6
Q ss_pred CCCeEEE---cCCC-cCHHHHHHHHHHHcCCeEEEEecCc
Q 027857 42 RKINLVY---GGGS-VGLMGLISQTVYAGGCHVLGIIPKA 77 (217)
Q Consensus 42 ~g~~lv~---GGg~-~GlM~a~~~gA~~~GG~viGV~P~~ 77 (217)
.+.-+++ |||. +|.=-.+++-+.+.+..+++|.|..
T Consensus 85 ~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~P 124 (303)
T cd02191 85 VDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLP 124 (303)
T ss_pred CCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3444454 3332 4777778888999998999997643
No 191
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=32.85 E-value=93 Score=23.06 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHH----CCCeEE---EcCCC-cCHHHHHHHHHHHcC
Q 027857 29 SDAALELGNELVR----RKINLV---YGGGS-VGLMGLISQTVYAGG 67 (217)
Q Consensus 29 ~~~A~~lG~~La~----~g~~lv---~GGg~-~GlM~a~~~gA~~~G 67 (217)
.+.|+.+|+.||+ .|+.-+ -|+.. -|-+.|+++++.++|
T Consensus 56 ~~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 56 VEAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 4778888888886 333322 23332 489999999999876
No 192
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.78 E-value=2e+02 Score=25.63 Aligned_cols=114 Identities=24% Similarity=0.362 Sum_probs=60.5
Q ss_pred CeEEEcCCCcCHHH--HHHHHHHHcCCeEEEE-ecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCc
Q 027857 44 INLVYGGGSVGLMG--LISQTVYAGGCHVLGI-IPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGT 120 (217)
Q Consensus 44 ~~lv~GGg~~GlM~--a~~~gA~~~GG~viGV-~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GT 120 (217)
+.-+|+|.| ++-. .+.++..++|-..+=+ +|.. .| + .++--.++.... +|-+|. |
T Consensus 20 i~yit~GdP-~~e~s~e~i~~L~~~GaD~iELGvPfS-DP-------v-----ADGP~Iq~A~~r-------AL~~g~-t 77 (265)
T COG0159 20 IPYVTAGDP-DLETSLEIIKTLVEAGADILELGVPFS-DP-------V-----ADGPTIQAAHLR-------ALAAGV-T 77 (265)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHhCCCCEEEecCCCC-Cc-------C-----ccCHHHHHHHHH-------HHHCCC-C
Confidence 444888887 6644 3455556677665444 2321 11 1 222222232222 344455 6
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCCCcchH-----HHHHHHhHHhcCCCCccccccEEEcCCHHHHHHHHHh
Q 027857 121 MEELLEMITWSQLGIHKKPVGLLNVDGYYNS-----LLALFDNGVQEGFIKPSARQIIISAPSAKELLEKMEQ 188 (217)
Q Consensus 121 L~El~e~~t~~qlg~~~kPiilln~~gf~~~-----l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 188 (217)
++..++++....-.-...|++|+. ||++ +.+|++++.+.|. +-+.+.|=|-|--+.+.+
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~~~~~ 141 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESDELLK 141 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHHHHHH
Confidence 677777764433223467999984 5554 5566666665553 445556655555554443
No 193
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=32.76 E-value=56 Score=27.03 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=53.9
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHh-----cC-CCCCcEEEEeC--CCcchH--HHHHHHhHHhcCCC--Cccccc
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQ-----LG-IHKKPVGLLNV--DGYYNS--LLALFDNGVQEGFI--KPSARQ 171 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~q-----lg-~~~kPiilln~--~gf~~~--l~~~l~~~~~~gfi--~~~~~~ 171 (217)
+...+|++||.|-..+|+.-+..=++-.- +. ..++|+++.-. ...|.+ ..+-++++.+.|+. ++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 45679999999999999987753211111 11 24799998732 135553 23346667676643 333211
Q ss_pred ------cEEEcCCHHHHHHHHHhhc
Q 027857 172 ------IIISAPSAKELLEKMEQYT 190 (217)
Q Consensus 172 ------~i~~~~d~ee~~~~l~~~~ 190 (217)
-..--.+++++++++.++.
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~ 178 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTL 178 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHh
Confidence 1344678999999998764
No 194
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.65 E-value=2.8e+02 Score=24.83 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=23.7
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL 46 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l 46 (217)
.+++|+|+.-.. .+...+.+.++.++|.++|+.+
T Consensus 4 ~~~~i~ii~~~~---~~~~~~~~~~l~~~L~~~g~~v 37 (296)
T PRK04539 4 PFHNIGIVTRPN---TPDIQDTAHTLITFLKQHGFTV 37 (296)
T ss_pred CCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEE
Confidence 367899996433 3666678888888887666443
No 195
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=32.49 E-value=1.2e+02 Score=25.91 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=30.8
Q ss_pred CCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 7 TGSNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 7 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
++.+...|+|||||=.+.+.-+...|+..-+.+...++.+|
T Consensus 17 ~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 17 TGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred ccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 55677789999999887777777777777777766665544
No 196
>PRK13059 putative lipid kinase; Reviewed
Probab=32.41 E-value=1.1e+02 Score=26.89 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=27.5
Q ss_pred HHHHCCC-eEEEcCCCcCHHHHHHHHHHHcC-CeEEEEecCc
Q 027857 38 ELVRRKI-NLVYGGGSVGLMGLISQTVYAGG-CHVLGIIPKA 77 (217)
Q Consensus 38 ~La~~g~-~lv~GGg~~GlM~a~~~gA~~~G-G~viGV~P~~ 77 (217)
..++.++ .||..||. |--.+++.+....+ ...+||+|.-
T Consensus 51 ~~~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 51 KDIDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHhhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECCC
Confidence 3344443 56677777 99999999988765 3569999843
No 197
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=32.29 E-value=90 Score=27.08 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
++|+|.||+.......-.+.++.+-++|.+.|+.++.
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 3678777654433333346789999999999999754
No 198
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=31.95 E-value=38 Score=29.93 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=23.6
Q ss_pred HHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHH
Q 027857 34 ELGNELVRRKINLVYGGGSVGLMGLISQTVYA 65 (217)
Q Consensus 34 ~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~ 65 (217)
+|+|.|+.+.+.||-||| |.=++++-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 378889999999999886 567777777765
No 199
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.90 E-value=96 Score=23.50 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
++|+|+|.|... + . .++.+-+.|.++|+.++
T Consensus 1 ksiAVvGaS~~~-~-~---~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNP-G-K---FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SST-T-S---HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCC-C-C---hHHHHHHHHHhCCCEEE
Confidence 579999977643 2 2 24566677777877665
No 200
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=31.87 E-value=2e+02 Score=24.15 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCeeEEc---cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEE
Q 027857 99 ERKAAMAQEAEAFIAL---PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIIS 175 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivl---pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 175 (217)
+...-+...||++|.- ..|+|. =++|++.. ++|++..+..+. .+++++ .....+.-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a~------G~Pvi~~~~~~~----~e~i~~---------~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPL--VIREALAA------GVPVIASDIGGM----AELVRD---------GVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHHC------CCCEEECCCCCH----HHHhcC---------CCcEEEEC
Confidence 4444567889988763 234443 25666654 899998775432 222211 11234455
Q ss_pred cCCHHHHHHHHHhhcC
Q 027857 176 APSAKELLEKMEQYTP 191 (217)
Q Consensus 176 ~~d~ee~~~~l~~~~~ 191 (217)
.+|++++.+.+.+...
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5678999888877654
No 201
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=31.84 E-value=1.3e+02 Score=26.25 Aligned_cols=69 Identities=16% Similarity=0.056 Sum_probs=38.0
Q ss_pred eeEEccCCCCcHHHHHHHHHHHhcC-CCCCcEEEEe---CCCcchHHHHHHHhHHhcCCCCccccccE--EEcCCHHHHH
Q 027857 110 AFIALPGGYGTMEELLEMITWSQLG-IHKKPVGLLN---VDGYYNSLLALFDNGVQEGFIKPSARQII--ISAPSAKELL 183 (217)
Q Consensus 110 a~IvlpGG~GTL~El~e~~t~~qlg-~~~kPiilln---~~gf~~~l~~~l~~~~~~gfi~~~~~~~i--~~~~d~ee~~ 183 (217)
|+|+|-||.||= +| ..+||.+=+. ..-|.+...+.+.++...- -.......+ ....+.++..
T Consensus 2 a~viLaGG~GtR-----------Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~-~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEID-LYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCccc-----------cCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCchhHHHHH
Confidence 689999999993 24 2467766443 3446666666665433210 000112222 2234566777
Q ss_pred HHHHhhc
Q 027857 184 EKMEQYT 190 (217)
Q Consensus 184 ~~l~~~~ 190 (217)
++++++.
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 7777654
No 202
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=31.72 E-value=1.1e+02 Score=22.84 Aligned_cols=17 Identities=6% Similarity=0.218 Sum_probs=7.9
Q ss_pred HHHHHHHHHHcCCeEEE
Q 027857 56 MGLISQTVYAGGCHVLG 72 (217)
Q Consensus 56 M~a~~~gA~~~GG~viG 72 (217)
+..+.+-..+.|..+++
T Consensus 99 ~~~~~~~l~~~g~~~v~ 115 (140)
T TIGR01753 99 VDDWEERLKEAGATIIA 115 (140)
T ss_pred HHHHHHHHHHCCCEEec
Confidence 33333433345666554
No 203
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=31.68 E-value=92 Score=28.07 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=29.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYG 49 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~G 49 (217)
|.+|+|++|......+.=...|+.+.+.|-+.||.++--
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 346888776554455666789999999999999988654
No 204
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.61 E-value=2.2e+02 Score=24.91 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=28.0
Q ss_pred ccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHH-----HHHHhHHhcCC
Q 027857 114 LPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLL-----ALFDNGVQEGF 164 (217)
Q Consensus 114 lpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~-----~~l~~~~~~gf 164 (217)
|-.|. |++++++.+.-..-...+.|++++ +||+++. +|++.+.+.|.
T Consensus 67 L~~G~-~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 67 LAAGV-TLADVFELVREIREKDPTIPIVLM---TYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred HHcCC-CHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhhcCHHHHHHHHHHcCC
Confidence 44454 566777766443323357899887 3777544 46666666553
No 205
>PRK13059 putative lipid kinase; Reviewed
Probab=31.57 E-value=1.2e+02 Score=26.70 Aligned_cols=34 Identities=26% Similarity=0.653 Sum_probs=23.7
Q ss_pred hcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 107 EAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 107 ~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
..| .|+.-||=||++|+...+. +.+ .+.|+.++-
T Consensus 56 ~~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgviP 89 (295)
T PRK13059 56 SYK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGILP 89 (295)
T ss_pred CCC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEEC
Confidence 345 5667899999999997763 222 246888873
No 206
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.54 E-value=66 Score=28.47 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYG 49 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~G 49 (217)
++|+|+.-.. .+.-.+.++++.++|.++|+.+..-
T Consensus 1 m~v~iv~~~~---k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVARRD---KEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4688885322 3566678889999999999988763
No 207
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=31.45 E-value=52 Score=29.51 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHH
Q 027857 33 LELGNELVRRKINLVYGGGSVGLMGLISQTVYA 65 (217)
Q Consensus 33 ~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~ 65 (217)
++|+|.|+.+.+.||-+|| |+=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 4689999999999998886 566777777765
No 208
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=31.44 E-value=2.1e+02 Score=20.95 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=36.0
Q ss_pred HHHHHHhcCeeEEc-cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCH
Q 027857 101 KAAMAQEAEAFIAL-PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSA 179 (217)
Q Consensus 101 k~~~~~~sda~Ivl-pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 179 (217)
...+...+|+.|.. .=+.++-.-++|.+.. ++|++..+. + +..+ ....... +.+.+|+
T Consensus 64 ~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~------G~pvi~~~~-~-~~~~------------~~~~~~~-~~~~~~~ 122 (135)
T PF13692_consen 64 LPEILAAADVGLIPSRFNEGFPNKLLEAMAA------GKPVIASDN-G-AEGI------------VEEDGCG-VLVANDP 122 (135)
T ss_dssp HHHHHHC-SEEEE-BSS-SCC-HHHHHHHCT------T--EEEEHH-H-CHCH------------S---SEE-EE-TT-H
T ss_pred HHHHHHhCCEEEEEeeCCCcCcHHHHHHHHh------CCCEEECCc-c-hhhh------------eeecCCe-EEECCCH
Confidence 44456778977763 2233666777777754 999998764 2 1111 1112223 3449999
Q ss_pred HHHHHHHHhh
Q 027857 180 KELLEKMEQY 189 (217)
Q Consensus 180 ee~~~~l~~~ 189 (217)
+++.+.|.+.
T Consensus 123 ~~l~~~i~~l 132 (135)
T PF13692_consen 123 EELAEAIERL 132 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 209
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=31.34 E-value=48 Score=31.24 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCC----------cCHHHHHHHHHHHcCCe
Q 027857 29 SDAALELGNELVRRKINLVYGGGS----------VGLMGLISQTVYAGGCH 69 (217)
Q Consensus 29 ~~~A~~lG~~La~~g~~lv~GGg~----------~GlM~a~~~gA~~~GG~ 69 (217)
.+.|+.|++.|.++|+.||+||-. .|+-+..++.+++.-+.
T Consensus 290 v~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~I 340 (413)
T COG0112 290 VKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGI 340 (413)
T ss_pred HHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCE
Confidence 456788899999999999998753 26677888888875443
No 210
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.85 E-value=2.7e+02 Score=23.27 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=23.8
Q ss_pred HHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 102 AAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
.++....|++|+.|......++....+. ..+.|+++++.
T Consensus 50 ~~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 50 NMASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 3445568999998865554555443332 24678888764
No 211
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=30.58 E-value=1.2e+02 Score=26.27 Aligned_cols=70 Identities=6% Similarity=0.021 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcC-CCCCcEEEEeCCC-cchHHHHHHHhHHhcCCCCccccccEEE
Q 027857 98 HERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLG-IHKKPVGLLNVDG-YYNSLLALFDNGVQEGFIKPSARQIIIS 175 (217)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg-~~~kPiilln~~g-f~~~l~~~l~~~~~~gfi~~~~~~~i~~ 175 (217)
.+|....++.||.+|+++ |=-.+.-+..+.... .++.|++++|... .++ ...-+.+
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d------------------~~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGETPLD------------------DIATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCC------------------cceeEEE
Confidence 356666678899999854 332333333332222 3578999999742 111 1123677
Q ss_pred cCCHHHHHHHHHhh
Q 027857 176 APSAKELLEKMEQY 189 (217)
Q Consensus 176 ~~d~ee~~~~l~~~ 189 (217)
..+..|++..|.++
T Consensus 227 ~~~~~~~l~~l~~~ 240 (244)
T PRK14138 227 NMDVVEFANRVMSE 240 (244)
T ss_pred eCCHHHHHHHHHHH
Confidence 88999999998764
No 212
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=30.31 E-value=1.5e+02 Score=25.26 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=49.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE------------------------EEcCCCcCHHHHHHHHHHHcC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL------------------------VYGGGSVGLMGLISQTVYAGG 67 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l------------------------v~GGg~~GlM~a~~~gA~~~G 67 (217)
.+|-|+|--+.+ -.+++++..|+.-|... ++|.|.+--.-.++.-+++.|
T Consensus 40 gkv~V~G~GkSG------~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g 113 (202)
T COG0794 40 GKVFVTGVGKSG------LIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLG 113 (202)
T ss_pred CcEEEEcCChhH------HHHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcC
Confidence 357777744433 35778888887655433 556666666667777777777
Q ss_pred CeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCC
Q 027857 68 CHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGG 117 (217)
Q Consensus 68 G~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG 117 (217)
..+|+|+-+. .--+.+.||.+|.+|+.
T Consensus 114 ~~liaiT~~~-----------------------~SsLak~aDvvl~ip~~ 140 (202)
T COG0794 114 AKLIAITSNP-----------------------DSSLAKAADVVLVIPVK 140 (202)
T ss_pred CcEEEEeCCC-----------------------CChHHHhcCeEEEccCc
Confidence 7777774221 11267788888888873
No 213
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=30.03 E-value=2.7e+02 Score=24.45 Aligned_cols=67 Identities=24% Similarity=0.309 Sum_probs=39.3
Q ss_pred HHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCH
Q 027857 102 AAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSA 179 (217)
Q Consensus 102 ~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 179 (217)
..+...||+++..+ -|+|.. +.|++.. ++|+|..+..|. ..+ +.+ . ..-+.+..|+
T Consensus 294 ~~~l~~ad~~l~~s~~E~~g~~--~lEAma~------G~PvI~s~~~~~-~e~-------i~~-----~-~~g~~~~~~~ 351 (392)
T cd03805 294 ELLLSSARALLYTPSNEHFGIV--PLEAMYA------GKPVIACNSGGP-LET-------VVD-----G-ETGFLCEPTP 351 (392)
T ss_pred HHHHhhCeEEEECCCcCCCCch--HHHHHHc------CCCEEEECCCCc-HHH-------hcc-----C-CceEEeCCCH
Confidence 45678899888643 334433 4677764 899999886542 221 111 1 1223345678
Q ss_pred HHHHHHHHhhc
Q 027857 180 KELLEKMEQYT 190 (217)
Q Consensus 180 ee~~~~l~~~~ 190 (217)
+++.+.|....
T Consensus 352 ~~~a~~i~~l~ 362 (392)
T cd03805 352 EEFAEAMLKLA 362 (392)
T ss_pred HHHHHHHHHHH
Confidence 88877776654
No 214
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.02 E-value=1.2e+02 Score=24.93 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=29.7
Q ss_pred HHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 102 AAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~ 146 (217)
..+....|++|+.|--...+.++.+-+.- .+.||++++..
T Consensus 50 ~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~-----~gIpvv~~d~~ 89 (257)
T PF13407_consen 50 QAISQGVDGIIVSPVDPDSLAPFLEKAKA-----AGIPVVTVDSD 89 (257)
T ss_dssp HHHHTTESEEEEESSSTTTTHHHHHHHHH-----TTSEEEEESST
T ss_pred HHHHhcCCEEEecCCCHHHHHHHHHHHhh-----cCceEEEEecc
Confidence 34456689999999888777777766653 46799998765
No 215
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=30.01 E-value=1.1e+02 Score=27.70 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=20.4
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCC-eEEEE
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGC-HVLGI 73 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG-~viGV 73 (217)
+..+|.|.|+.|||- ...|...|. ++|.+
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~ 199 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIVV 199 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEEe
Confidence 468899999999998 444555564 44444
No 216
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=29.92 E-value=3.8e+02 Score=23.43 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=40.9
Q ss_pred HHHHhcCeeEEc--cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHH
Q 027857 103 AMAQEAEAFIAL--PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAK 180 (217)
Q Consensus 103 ~~~~~sda~Ivl--pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~e 180 (217)
.+...||++|.. ..|+|.. +.|++.. ++||+.-+..|. . ++++ + .....+.-.+|++
T Consensus 268 ~~~~~adi~v~pS~~Eg~~~~--~lEAma~------G~Pvv~s~~~g~-~---e~i~----~-----~~~g~~~~~~d~~ 326 (374)
T TIGR03088 268 ALMQALDLFVLPSLAEGISNT--ILEAMAS------GLPVIATAVGGN-P---ELVQ----H-----GVTGALVPPGDAV 326 (374)
T ss_pred HHHHhcCEEEeccccccCchH--HHHHHHc------CCCEEEcCCCCc-H---HHhc----C-----CCceEEeCCCCHH
Confidence 456789987753 2444443 6777765 899999876542 2 2221 1 1223444457899
Q ss_pred HHHHHHHhhc
Q 027857 181 ELLEKMEQYT 190 (217)
Q Consensus 181 e~~~~l~~~~ 190 (217)
++.+.|....
T Consensus 327 ~la~~i~~l~ 336 (374)
T TIGR03088 327 ALARALQPYV 336 (374)
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 217
>PLN02494 adenosylhomocysteinase
Probab=29.80 E-value=2.1e+02 Score=27.69 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=40.9
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcH-
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTM- 121 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL- 121 (217)
.-.+|.|.|++| ..+++-+...|.+|+.+-.+.....+.....+. +.++.+ .++.+|.+|...|..+.+
T Consensus 255 KtVvViGyG~IG--r~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~----vv~leE----al~~ADVVI~tTGt~~vI~ 324 (477)
T PLN02494 255 KVAVICGYGDVG--KGCAAAMKAAGARVIVTEIDPICALQALMEGYQ----VLTLED----VVSEADIFVTTTGNKDIIM 324 (477)
T ss_pred CEEEEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe----eccHHH----HHhhCCEEEECCCCccchH
Confidence 345688888877 445566677788888773221100010111111 113322 457899999988877765
Q ss_pred HHHHH
Q 027857 122 EELLE 126 (217)
Q Consensus 122 ~El~e 126 (217)
.+.+.
T Consensus 325 ~e~L~ 329 (477)
T PLN02494 325 VDHMR 329 (477)
T ss_pred HHHHh
Confidence 44443
No 218
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=29.74 E-value=1.2e+02 Score=23.04 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=24.2
Q ss_pred eEEEcCCCcCHHHHHHHHHHHcCC----eEEEEecCc
Q 027857 45 NLVYGGGSVGLMGLISQTVYAGGC----HVLGIIPKA 77 (217)
Q Consensus 45 ~lv~GGg~~GlM~a~~~gA~~~GG----~viGV~P~~ 77 (217)
.|+..||. |..-.+..+..+... ..+|++|.-
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 66777778 888888888876654 468998853
No 219
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.67 E-value=3.2e+02 Score=24.59 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKIN 45 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~ 45 (217)
.+++|+|+.-.. .+...+.++++.++|.++|+.
T Consensus 4 ~~~~I~iv~~~~---~~~~~~~~~~l~~~L~~~g~~ 36 (306)
T PRK03372 4 ASRRVLLVAHTG---RDEATEAARRVAKQLGDAGIG 36 (306)
T ss_pred CccEEEEEecCC---CHHHHHHHHHHHHHHHHCCCE
Confidence 456799996432 355567778888877665543
No 220
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.60 E-value=2.7e+02 Score=25.37 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=35.6
Q ss_pred HHHHHHHH--CCCeEEEcCCC---cCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhc
Q 027857 34 ELGNELVR--RKINLVYGGGS---VGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEA 108 (217)
Q Consensus 34 ~lG~~La~--~g~~lv~GGg~---~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~s 108 (217)
+|++.+.+ +..-||||.+. .|+.+.+.+...++|-.+ .+.. .. .+++-.+.+ .......-....
T Consensus 16 ~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~-~~~~-~v-----~~~p~~~~v----~~~~~~~~~~~~ 84 (380)
T cd08185 16 ELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEV-VVFD-KV-----EPNPTTTTV----MEGAALAREEGC 84 (380)
T ss_pred HHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeE-EEeC-Cc-----cCCCCHHHH----HHHHHHHHHcCC
Confidence 45555543 45667887642 466666665554444433 2211 11 112111111 111122223458
Q ss_pred CeeEEccCCC
Q 027857 109 EAFIALPGGY 118 (217)
Q Consensus 109 da~IvlpGG~ 118 (217)
|++|.++||.
T Consensus 85 D~IiavGGGS 94 (380)
T cd08185 85 DFVVGLGGGS 94 (380)
T ss_pred CEEEEeCCcc
Confidence 9999999976
No 221
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=29.58 E-value=1.7e+02 Score=25.67 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHH
Q 027857 104 MAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKE 181 (217)
Q Consensus 104 ~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee 181 (217)
+...||++|... .|+|. =+.|+++. ++|+|..+.+..-. + ++ .......+.-..|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma~------G~PvI~~~~~~g~~---~----~v-----~~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALSH------GLPVISYDVNYGPS---E----II-----EDGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHhC------CCCEEEecCCCCcH---H----Hc-----ccCCCceEeCCCcHHH
Confidence 456799888764 23442 35666654 89999987641111 1 11 1122233443458888
Q ss_pred HHHHHHhhcC
Q 027857 182 LLEKMEQYTP 191 (217)
Q Consensus 182 ~~~~l~~~~~ 191 (217)
+.+.|.....
T Consensus 335 la~~i~~ll~ 344 (372)
T cd04949 335 LAEAIIELLN 344 (372)
T ss_pred HHHHHHHHHc
Confidence 8888877654
No 222
>PRK07454 short chain dehydrogenase; Provisional
Probab=29.45 E-value=3.1e+02 Score=22.35 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 8 GSNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
..+++++.|.|+++ ...+.+.+.|+++|+.++.-..+..-...+.+...+.++.+.-+
T Consensus 3 ~~~~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (241)
T PRK07454 3 LNSMPRALITGASS--------GIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAY 60 (241)
T ss_pred CCCCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEE
No 223
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.44 E-value=3.1e+02 Score=24.07 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=33.5
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe--------EEEcCCCcCHHHHHHHHHHH--cCCeEEEE
Q 027857 13 RVCVFCGSHSGNRRVFSDAALELGNELVRRKIN--------LVYGGGSVGLMGLISQTVYA--GGCHVLGI 73 (217)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~--------lv~GGg~~GlM~a~~~gA~~--~GG~viGV 73 (217)
+|+|+. +. .+...+.+.++.++|.++|+. +++=||. |-|=-+++-+.. .+-.++||
T Consensus 2 ~i~Ii~--~~--~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGD-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 2 KVAIIS--NG--DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGGD-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred EEEEEe--CC--CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECCc-HHHHHHHHHhcccCCCCeEEEE
Confidence 588884 32 466678888898888776542 2334555 555444444443 35566776
No 224
>PRK07102 short chain dehydrogenase; Provisional
Probab=29.44 E-value=76 Score=26.18 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=10.7
Q ss_pred cCCHHHHHHHHHhhcC
Q 027857 176 APSAKELLEKMEQYTP 191 (217)
Q Consensus 176 ~~d~ee~~~~l~~~~~ 191 (217)
..+++++.+.+.+...
T Consensus 196 ~~~~~~~a~~i~~~~~ 211 (243)
T PRK07102 196 TAQPEEVAKDIFRAIE 211 (243)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4578888777765543
No 225
>PLN02527 aspartate carbamoyltransferase
Probab=29.22 E-value=4.2e+02 Score=23.73 Aligned_cols=130 Identities=17% Similarity=0.103 Sum_probs=69.9
Q ss_pred HHHHHcCCeEEEEecCc--c-c-CCccC------CCCcceEEecCCH-HHHHHHHHHhcCeeEEccCCCCc----HHHHH
Q 027857 61 QTVYAGGCHVLGIIPKA--L-M-PLEIS------GETVGEVRTVSDM-HERKAAMAQEAEAFIALPGGYGT----MEELL 125 (217)
Q Consensus 61 ~gA~~~GG~viGV~P~~--~-~-~~e~~------~~~~~~~i~~~~m-~~Rk~~~~~~sda~IvlpGG~GT----L~El~ 125 (217)
.++...||+++-+.+.. . . ..|.. -..+.+.++..+. +..-..|.+.|..- |+-+|.|. ...|.
T Consensus 59 ~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vP-VINa~~g~~~HPtQ~La 137 (306)
T PLN02527 59 SAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIP-VINAGDGPGQHPTQALL 137 (306)
T ss_pred HHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCC-EEECCCCCCCChHHHHH
Confidence 45566788888886521 1 1 11211 0122455555444 55556677777765 44555564 56777
Q ss_pred HHHHHHh-cC-CCCCcEEEEeCC---CcchHHHHHHHhH--------HhcCCCCcc-c-------cccEEEcCCHHHHHH
Q 027857 126 EMITWSQ-LG-IHKKPVGLLNVD---GYYNSLLALFDNG--------VQEGFIKPS-A-------RQIIISAPSAKELLE 184 (217)
Q Consensus 126 e~~t~~q-lg-~~~kPiilln~~---gf~~~l~~~l~~~--------~~~gfi~~~-~-------~~~i~~~~d~ee~~~ 184 (217)
.++|+.+ .| +.++.|.+++.. .-+..+...+..+ ..+++-.+. . ...+.+.+|++++++
T Consensus 138 Dl~Ti~e~~g~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~ 217 (306)
T PLN02527 138 DVYTIQREIGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVAS 217 (306)
T ss_pred HHHHHHHHhCCcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhC
Confidence 7788765 45 467788888642 2455555544433 112221111 1 123567788888886
Q ss_pred HHHhhcC
Q 027857 185 KMEQYTP 191 (217)
Q Consensus 185 ~l~~~~~ 191 (217)
...-.|.
T Consensus 218 ~aDvvyt 224 (306)
T PLN02527 218 KCDVLYQ 224 (306)
T ss_pred CCCEEEE
Confidence 5544443
No 226
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=29.18 E-value=1.5e+02 Score=25.99 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=22.8
Q ss_pred eEEccCCCCcHHHHHHHHHHHhcC-CCCCcEEEEe
Q 027857 111 FIALPGGYGTMEELLEMITWSQLG-IHKKPVGLLN 144 (217)
Q Consensus 111 ~IvlpGG~GTL~El~e~~t~~qlg-~~~kPiilln 144 (217)
.|+.-||=||++|+...+. +.+ ..+.|+.++-
T Consensus 55 ~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgiiP 87 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALA--QIRDDAAPALGLLP 87 (293)
T ss_pred EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEEc
Confidence 6778899999999997773 222 1245788873
No 227
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=29.16 E-value=2.5e+02 Score=23.45 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=39.2
Q ss_pred HHHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCC
Q 027857 101 KAAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS 178 (217)
Q Consensus 101 k~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 178 (217)
..-+...||++|.-. .|+|+- +.|++.. ++|+|..+..++ . +++.+ .. .+...++
T Consensus 275 ~~~~~~~adv~v~ps~~e~~~~~--~~Eama~------G~PvI~~~~~~~-~---~~~~~--~~---------~~~~~~~ 331 (375)
T cd03821 275 KAAALADADLFVLPSHSENFGIV--VAEALAC------GTPVVTTDKVPW-Q---ELIEY--GC---------GWVVDDD 331 (375)
T ss_pred HHHHHhhCCEEEeccccCCCCcH--HHHHHhc------CCCEEEcCCCCH-H---HHhhc--Cc---------eEEeCCC
Confidence 344567799877643 455543 5777764 899998876532 2 22222 22 2344456
Q ss_pred HHHHHHHHHhhc
Q 027857 179 AKELLEKMEQYT 190 (217)
Q Consensus 179 ~ee~~~~l~~~~ 190 (217)
++++.+.|.+..
T Consensus 332 ~~~~~~~i~~l~ 343 (375)
T cd03821 332 VDALAAALRRAL 343 (375)
T ss_pred hHHHHHHHHHHH
Confidence 677777776654
No 228
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.11 E-value=1.3e+02 Score=24.56 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHH
Q 027857 25 RRVFSDAALELGNELVRRKINLVYGGGSVGLM 56 (217)
Q Consensus 25 ~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM 56 (217)
.+...+.|.++.+.|.+.+...++|.|..++.
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~ 52 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAAD 52 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHHH
Confidence 36777889999999999999999999985553
No 229
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=28.86 E-value=1.8e+02 Score=27.61 Aligned_cols=69 Identities=22% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCcc
Q 027857 99 ERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPS 168 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~ 168 (217)
-|+-+=...++++++-|==+|||.|.+++..+.+-.- =+||+.-....=-|..+.-|.-....|+|+..
T Consensus 319 l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~g-y~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 319 LKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG-YTAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred HHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCC-CeEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 4555555668999999999999999999998866321 15666554433334445544444556666533
No 230
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.71 E-value=2.5e+02 Score=24.30 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
++|-|.|+++ -..+.+++.|+++|+.|+.-+..
T Consensus 41 k~vlItGasg--------gIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 41 KRILLTGASS--------GIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEEECC
Confidence 4566666654 23456667777778877665554
No 231
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=28.68 E-value=87 Score=25.59 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=31.0
Q ss_pred CCCCCCCCCCcceEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 1 MEEEGYTGSNFKRVCVFCGSHSGN---RRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 1 ~~~~~~~~~~~~~I~Vfggs~~~~---~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
|.+.|..++++ .+-||||++.-. ...-.+.++..=+.|+++|+.|+.
T Consensus 74 m~~~Ga~~~~l-~aKifGGA~m~~~~~~~IG~rNi~~a~~~L~~~gI~i~a 123 (159)
T PRK13495 74 LKKMGAKVERL-EAKIAGGASMFESSGMNIGARNVEAVKKHLKDFGIKLVA 123 (159)
T ss_pred HHHcCCCHHHE-EEEEEeCCccCCCCCCChHHHHHHHHHHHHHHcCCcEEE
Confidence 34566666554 788999988754 223345555555668889999974
No 232
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=28.67 E-value=62 Score=23.27 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=31.9
Q ss_pred CCCCCcEEEEeCCCcchHHHHHHHh-HHhcCCCCccccccEEEcCCHHHHHHHHHhhc
Q 027857 134 GIHKKPVGLLNVDGYYNSLLALFDN-GVQEGFIKPSARQIIISAPSAKELLEKMEQYT 190 (217)
Q Consensus 134 g~~~kPiilln~~gf~~~l~~~l~~-~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~~ 190 (217)
+.+-+|++.++.+|..+.+.+-++. +.....++-+... ...+|.+++.+.|.+..
T Consensus 13 a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~t 68 (84)
T PF01985_consen 13 AHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEKT 68 (84)
T ss_dssp HTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHHh
Confidence 3456999999999999999998874 4444555433333 13345667777676543
No 233
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=28.67 E-value=2.2e+02 Score=26.40 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEc
Q 027857 99 ERKAAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISA 176 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 176 (217)
+....+...||++|.-. .|+|. =++|+++. ++|||..+..|.- .+ +++- .......+.-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA~------G~PVI~s~~gg~~-ei---v~~~------~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMAS------GVPVVAARAGGIP-DI---IPPD------QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHHc------CCCEEEcCCCCcH-hh---hhcC------CCCCceEEeCC
Confidence 34455678899888532 34443 25677765 8999988765432 22 1110 00112233335
Q ss_pred CCHHHHHHHHHhhc
Q 027857 177 PSAKELLEKMEQYT 190 (217)
Q Consensus 177 ~d~ee~~~~l~~~~ 190 (217)
+|++++.+.|.+..
T Consensus 385 ~d~~~la~~i~~ll 398 (465)
T PLN02871 385 GDVDDCVEKLETLL 398 (465)
T ss_pred CCHHHHHHHHHHHH
Confidence 67887777776543
No 234
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=28.62 E-value=2.6e+02 Score=27.03 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=49.4
Q ss_pred EEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHH-HH
Q 027857 46 LVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTME-EL 124 (217)
Q Consensus 46 lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~-El 124 (217)
+|.|.|++| .++++-+...|.+|+.+-+......+.....+ .+.++. -+++.||.||..+|.-+.++ |.
T Consensus 258 gVIG~G~IG--r~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~----~~~~le----ell~~ADIVI~atGt~~iI~~e~ 327 (476)
T PTZ00075 258 VVCGYGDVG--KGCAQALRGFGARVVVTEIDPICALQAAMEGY----QVVTLE----DVVETADIFVTATGNKDIITLEH 327 (476)
T ss_pred EEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc----eeccHH----HHHhcCCEEEECCCcccccCHHH
Confidence 477877744 45677777778887776221110000001111 112343 24678999999998777775 55
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCcch
Q 027857 125 LEMITWSQLGIHKKPVGLLNVDGYYN 150 (217)
Q Consensus 125 ~e~~t~~qlg~~~kPiilln~~gf~~ 150 (217)
+..+ +.-.+|.|...+.+
T Consensus 328 ~~~M--------KpGAiLINvGr~d~ 345 (476)
T PTZ00075 328 MRRM--------KNNAIVGNIGHFDN 345 (476)
T ss_pred Hhcc--------CCCcEEEEcCCCch
Confidence 5444 34567788865643
No 235
>PRK07677 short chain dehydrogenase; Provisional
Probab=28.56 E-value=88 Score=26.01 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=9.4
Q ss_pred HHHHHHHHHHCCCeEEE
Q 027857 32 ALELGNELVRRKINLVY 48 (217)
Q Consensus 32 A~~lG~~La~~g~~lv~ 48 (217)
.+.+++.|+++|+.|+.
T Consensus 14 G~~ia~~l~~~G~~Vi~ 30 (252)
T PRK07677 14 GKAMAKRFAEEGANVVI 30 (252)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 34555555666666544
No 236
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.45 E-value=3.1e+02 Score=24.62 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL 46 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l 46 (217)
|++|+|+.-.. .+...+.+.++.++|.++|+.+
T Consensus 1 m~~igiv~n~~---~~~~~~~~~~l~~~L~~~g~~v 33 (305)
T PRK02649 1 MPKAGIIYNDG---KPLAVRTAEELQDKLEAAGWEV 33 (305)
T ss_pred CCEEEEEEcCC---CHHHHHHHHHHHHHHHHCCCEE
Confidence 56799996432 3556677888888887766544
No 237
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=28.44 E-value=1.1e+02 Score=27.10 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 98 HERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
..||.++... --|..|++|+-..+. . =+..+..+|+++.+.|.|-++ .+....++
T Consensus 13 ekRk~lLllL-------~egPkti~EI~~~l~---------------v--s~~ai~pqiKkL~~~~LV~~~-~~~Y~LS~ 67 (260)
T COG4742 13 EKRKDLLLLL-------KEGPKTIEEIKNELN---------------V--SSSAILPQIKKLKDKGLVVQE-GDRYSLSS 67 (260)
T ss_pred HHHHHHHHHH-------HhCCCCHHHHHHHhC---------------C--CcHHHHHHHHHHhhCCCEEec-CCEEEecc
Confidence 4677776544 458999999997773 2 145677888888888888765 45555566
Q ss_pred CHHHHHHHHHhhcCCCCCCCCCcc-ccccccCCCc
Q 027857 178 SAKELLEKMEQYTPAHEHVAPHES-WQMEQLGDYP 211 (217)
Q Consensus 178 d~ee~~~~l~~~~~~~~~~~~~~~-w~~~~~~~~~ 211 (217)
-.+-++..++.....-..--.+.+ |....++-.|
T Consensus 68 ~G~iiv~km~~ll~tl~v~e~n~dyW~~hDls~IP 102 (260)
T COG4742 68 LGKIIVEKMEPLLDTLEVFEENYDYWSEHDLSGIP 102 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHhcCCCccCC
Confidence 555555555543211110111122 6666666555
No 238
>PRK00625 shikimate kinase; Provisional
Probab=28.39 E-value=1.9e+02 Score=23.46 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEe-c-CcccC----CccCCCCcceE-EecCCHHHH
Q 027857 28 FSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGII-P-KALMP----LEISGETVGEV-RTVSDMHER 100 (217)
Q Consensus 28 ~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~-P-~~~~~----~e~~~~~~~~~-i~~~~m~~R 100 (217)
|.+...++-+.+...+..|.+|||. ++..-+...++.+|.++-+- | +.+.. +.... ..... .+.+-+..|
T Consensus 59 fr~~E~~~l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~-~~~~~~~~~~ll~~R 135 (173)
T PRK00625 59 FCREEFLALTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPE-RLKHAPSLEEILSQR 135 (173)
T ss_pred HHHHHHHHHHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCc-ccCcHHHHHHHHHHH
Confidence 3333334445555567777788876 44444555677778776663 2 11111 11110 01000 112235788
Q ss_pred HHHHHHhcCeeEE
Q 027857 101 KAAMAQEAEAFIA 113 (217)
Q Consensus 101 k~~~~~~sda~Iv 113 (217)
.....+.||..|-
T Consensus 136 ~~~Y~~~ad~~i~ 148 (173)
T PRK00625 136 IDRMRSIADYIFS 148 (173)
T ss_pred HHHHHHHCCEEEe
Confidence 8887777887764
No 239
>PRK05867 short chain dehydrogenase; Provisional
Probab=28.25 E-value=3.2e+02 Score=22.54 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
+++-|.|+++ -..+++.+.|+++|+.++..+....-.+...+...+.++++..+
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 240
>PRK06180 short chain dehydrogenase; Provisional
Probab=28.22 E-value=83 Score=26.74 Aligned_cols=33 Identities=15% Similarity=-0.076 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
++|.|.|+++ -..+.+.+.|+++|+.++..+.+
T Consensus 5 ~~vlVtGasg--------giG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLITGVSS--------GFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEecCCC--------hHHHHHHHHHHhCcCEEEEEeCC
Confidence 4677777665 23456677777788887665544
No 241
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=28.20 E-value=1.8e+02 Score=26.08 Aligned_cols=83 Identities=19% Similarity=0.077 Sum_probs=39.9
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccC-CCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcH
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEIS-GETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTM 121 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~-~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL 121 (217)
...+|.|+|++|++ +..-|+..|.+++.+........+.. .-..+..+...+- ++-..+....|.+|=.-|+..|+
T Consensus 185 ~~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~ 261 (360)
T PLN02586 185 KHLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHAL 261 (360)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHH
Confidence 45667777666665 45567777888877643221100110 1122223322221 11111112347777667766666
Q ss_pred HHHHHHH
Q 027857 122 EELLEMI 128 (217)
Q Consensus 122 ~El~e~~ 128 (217)
++.+..+
T Consensus 262 ~~~~~~l 268 (360)
T PLN02586 262 GPLLGLL 268 (360)
T ss_pred HHHHHHh
Confidence 6655443
No 242
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=28.10 E-value=1.5e+02 Score=23.83 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=19.1
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 9 SNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 9 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
.+.++|.|+||+.. |. -.+..++|.|+++|+.+.
T Consensus 23 ~~~~~v~il~G~Gn-NG----gDgl~~AR~L~~~G~~V~ 56 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NG----GDGLVAARHLANRGYNVT 56 (169)
T ss_dssp CTT-EEEEEE-SSH-HH----HHHHHHHHHHHHTTCEEE
T ss_pred cCCCeEEEEECCCC-Ch----HHHHHHHHHHHHCCCeEE
Confidence 44567788887652 11 123456777777777763
No 243
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=28.08 E-value=4.5e+02 Score=23.71 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCeeEEccCCCC----cHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHH-HHhHHhcCCCCccccccE
Q 027857 99 ERKAAMAQEAEAFIALPGGYG----TMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLAL-FDNGVQEGFIKPSARQII 173 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~G----TL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~-l~~~~~~gfi~~~~~~~i 173 (217)
++-..+...=+|+||=|| .| ++.++..++.... ..++|+++ +.+|.|- .+. .+.+.. |+ ..+
T Consensus 93 ~~i~k~L~RlhavVIGPG-LGRdp~~~k~i~~iley~~--~~dvP~VI-DaDGL~L--v~q~~e~l~~-~~------~~v 159 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPG-LGRDPAILKEIAKILEYLR--GKDVPLVI-DADGLWL--VEQLPERLIG-GY------PKV 159 (306)
T ss_pred hHHHHHHhheeEEEECCC-CCCCHHHHHHHHHHHHHHh--cCCCcEEE-cCCceEe--hhhchhhhhc-cC------cee
Confidence 445557788898888775 44 5556666655422 23678876 6678872 221 122221 11 225
Q ss_pred EEcCCHHHHHHHHHh
Q 027857 174 ISAPSAKELLEKMEQ 188 (217)
Q Consensus 174 ~~~~d~ee~~~~l~~ 188 (217)
+.+.|.-|.-+..++
T Consensus 160 iLTPNvvEFkRLcd~ 174 (306)
T KOG3974|consen 160 ILTPNVVEFKRLCDA 174 (306)
T ss_pred eeCCcHHHHHHHHHH
Confidence 666777665554444
No 244
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=28.02 E-value=1.5e+02 Score=25.42 Aligned_cols=70 Identities=9% Similarity=0.048 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 98 HERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
..+....++.||.+||++=.. ++.-+..+.+.-..+.|++++|.+.- + + +.....-+.+..
T Consensus 166 ~~~~~~~~~~aDlllvvGTSl----~V~pa~~l~~~~~~~~~~v~iN~~~~--~------------~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTSL----KVAPFASLPSRVPSEVPRVLINREPV--G------------H-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCCC----eeccHHHHHHHHhCCCcEEEEeCCCC--C------------C-CCCCCcCEEEeC
Confidence 355556678899998864332 22222222222224689999996521 0 0 000112357778
Q ss_pred CHHHHHHHH
Q 027857 178 SAKELLEKM 186 (217)
Q Consensus 178 d~ee~~~~l 186 (217)
+.+|++..|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888887654
No 245
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=27.93 E-value=56 Score=27.49 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=17.7
Q ss_pred CCCcEEEEeCCCcchHHHHHHHhHH
Q 027857 136 HKKPVGLLNVDGYYNSLLALFDNGV 160 (217)
Q Consensus 136 ~~kPiilln~~gf~~~l~~~l~~~~ 160 (217)
..+|+|==|. |||+.|+++=+++.
T Consensus 133 a~RpiIRPN~-GFw~QLi~YE~qL~ 156 (198)
T KOG1718|consen 133 ARRPIIRPNV-GFWRQLIDYEQQLF 156 (198)
T ss_pred hhCceeCCCc-cHHHHHHHHHHHhc
Confidence 4679886665 79999998655554
No 246
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=27.88 E-value=4.4e+02 Score=23.51 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=71.7
Q ss_pred CCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCC
Q 027857 8 GSNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGET 87 (217)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~ 87 (217)
..+.-++=|.+..+.--.+.+ ..-+-.+.|++.||.+.-=..+ .=.+++--.++|.. .|.|=. .|.. ...+
T Consensus 104 ~~~wIKLEVi~D~~~LlPD~~--etl~Aae~Lv~eGF~VlPY~~~---D~v~a~rLed~Gc~--aVMPlg-sPIG-Sg~G 174 (267)
T CHL00162 104 DNNFVKLEVISDPKYLLPDPI--GTLKAAEFLVKKGFTVLPYINA---DPMLAKHLEDIGCA--TVMPLG-SPIG-SGQG 174 (267)
T ss_pred CCCeEEEEEeCCCcccCCChH--HHHHHHHHHHHCCCEEeecCCC---CHHHHHHHHHcCCe--EEeecc-Cccc-CCCC
Confidence 344557778876654322222 2345677788999998642333 45677777888875 344411 1111 1111
Q ss_pred cceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 88 VGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 88 ~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
+. -..--+++.+.++.-|++.+|+||-+....++.+ +---+++|+
T Consensus 175 l~-------n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmEl------GaDgVL~nS 219 (267)
T CHL00162 175 LQ-------NLLNLQIIIENAKIPVIIDAGIGTPSEASQAMEL------GASGVLLNT 219 (267)
T ss_pred CC-------CHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHc------CCCEEeecc
Confidence 11 0223567788899999999999999999998876 445556664
No 247
>PRK09271 flavodoxin; Provisional
Probab=27.85 E-value=1.1e+02 Score=24.20 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027857 13 RVCVFCGSHSGNRRVFSDAALELGNELVRRKINL 46 (217)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l 46 (217)
+|.|+.+|..++. .+.|+.+++.|.++|+.+
T Consensus 2 kv~IvY~S~tGnT---e~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNT---REVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchH---HHHHHHHHHHHHhCCCee
Confidence 5666666666632 345666777666666654
No 248
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=27.85 E-value=1.6e+02 Score=24.93 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=22.9
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCCCcCHHHHH
Q 027857 17 FCGSHSGNRRVFSDAALELGNELVRRK--INLVYGGGSVGLMGLI 59 (217)
Q Consensus 17 fggs~~~~~~~~~~~A~~lG~~La~~g--~~lv~GGg~~GlM~a~ 59 (217)
||||...+.+...+.++.+.+.. +.| ..||.||+. +.....
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~g-~~~~~l 48 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAMG-GTTDEL 48 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCCC-chhHHH
Confidence 78888754344555555555533 444 557788754 444333
No 249
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=27.81 E-value=1.1e+02 Score=24.14 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHC-CCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 28 FSDAALELGNELVRR-KINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 28 ~~~~A~~lG~~La~~-g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
|.+.-.++-+.+... +..|.||||. ++..-+...+...|.+|=+
T Consensus 47 fr~~E~~~l~~l~~~~~~VIa~GGG~--~~~~~~~~~L~~~g~vI~L 91 (158)
T PF01202_consen 47 FRELESEALRELLKENNCVIACGGGI--VLKEENRELLKENGLVIYL 91 (158)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEE-TTG--GGSHHHHHHHHHHSEEEEE
T ss_pred HHHHHHHHHHHHhccCcEEEeCCCCC--cCcHHHHHHHHhCCEEEEE
Confidence 333334444555554 7788888876 6666677788888888877
No 250
>PRK07283 hypothetical protein; Provisional
Probab=27.77 E-value=1.3e+02 Score=22.16 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=28.4
Q ss_pred eEEecCCHH--HHHHHH--HHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHH
Q 027857 90 EVRTVSDMH--ERKAAM--AQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLA 154 (217)
Q Consensus 90 ~~i~~~~m~--~Rk~~~--~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~ 154 (217)
-+++..|-+ .|+.+. .+....-++.. .|.+|+..++- . +..|+-+...||.+.++.
T Consensus 37 lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~---~t~~eLG~a~G-----k-~~~vvai~d~g~a~~l~~ 96 (98)
T PRK07283 37 LVFLANDAGPNLTKKVTDKSNYYQVEVSTV---FSTLELSAAVG-----K-PRKVLAVTDAGFSKKMRS 96 (98)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCCEEEe---CCHHHHHHHhC-----C-CceEEEEeChhHHHHHHH
Confidence 345555553 233322 22334444433 49999987772 2 222333334578877665
No 251
>PRK06703 flavodoxin; Provisional
Probab=27.73 E-value=1.5e+02 Score=23.01 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=7.5
Q ss_pred HHHHHHHcCCeEEE
Q 027857 59 ISQTVYAGGCHVLG 72 (217)
Q Consensus 59 ~~~gA~~~GG~viG 72 (217)
+.+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 44444456666555
No 252
>PRK06924 short chain dehydrogenase; Provisional
Probab=27.71 E-value=1.1e+02 Score=25.35 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=0.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
|++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEE
No 253
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.50 E-value=77 Score=25.81 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=32.1
Q ss_pred CCCCCCCCCCcceEEEEcCCCCCCC-----hHHHHHHHHHHHHHHHCCCeEEE
Q 027857 1 MEEEGYTGSNFKRVCVFCGSHSGNR-----RVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 1 ~~~~~~~~~~~~~I~Vfggs~~~~~-----~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
|.+.|..++++ .+-||||++.-+. ..-.+.++..-+.|.++|+.|+.
T Consensus 74 m~~~Ga~~~~l-~akifGGA~m~~~~~~~~~IG~rNi~~a~~~L~~~gi~i~a 125 (157)
T PRK13488 74 MVKLGARKSKL-EAKLAGGAAMFDFSSNNLNIGERNIESAKETLKKLGIRIVA 125 (157)
T ss_pred HHHcCCCHHHE-EEEEEeCcccccCCCccCChHHHHHHHHHHHHHHCCCcEEE
Confidence 34567666554 7889999986531 23456666666778899999973
No 254
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=27.40 E-value=5e+02 Score=24.01 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCC-ccccccEEEcCCH
Q 027857 103 AMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIK-PSARQIIISAPSA 179 (217)
Q Consensus 103 ~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~-~~~~~~i~~~~d~ 179 (217)
.+...||++|.-. -++|.. +.|++. .++|+|.-+..|.-+-+.+ +-.. .....+++-..|+
T Consensus 361 ~~~~~aDv~l~pS~~E~~gl~--~lEAma------~G~pvI~s~~gg~~e~v~~--------~~~~~~~~~G~l~~~~d~ 424 (473)
T TIGR02095 361 LIYAGADFILMPSRFEPCGLT--QLYAMR------YGTVPIVRRTGGLADTVVD--------GDPEAESGTGFLFEEYDP 424 (473)
T ss_pred HHHHhCCEEEeCCCcCCcHHH--HHHHHH------CCCCeEEccCCCccceEec--------CCCCCCCCceEEeCCCCH
Confidence 4678899887532 344432 244554 3889998887664432211 1000 0012233444688
Q ss_pred HHHHHHHHh
Q 027857 180 KELLEKMEQ 188 (217)
Q Consensus 180 ee~~~~l~~ 188 (217)
+++.+.|.+
T Consensus 425 ~~la~~i~~ 433 (473)
T TIGR02095 425 GALLAALSR 433 (473)
T ss_pred HHHHHHHHH
Confidence 877776654
No 255
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.40 E-value=81 Score=25.95 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=32.1
Q ss_pred CCCCCCCCCcceEEEEcCCCCCCC--------hHHHHHHHHHHHHHHHCCCeEEE
Q 027857 2 EEEGYTGSNFKRVCVFCGSHSGNR--------RVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 2 ~~~~~~~~~~~~I~Vfggs~~~~~--------~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
.+.|..++++ .+-||||++.-.. +.-.+.++..-+.|.++|+.|+.
T Consensus 80 ~~~Ga~~~~l-~aKifGGA~m~~~~~~~~~~~~IG~rNi~~a~~~L~~~gi~i~a 133 (167)
T PRK13498 80 LANGTPPEDY-QVKLFGGGNMFPELQQDLHTLNVADKNIHAALALAEQNGLHLKA 133 (167)
T ss_pred HHcCCCHHHE-EEEEEECcccccccccCcccCChHHHHHHHHHHHHHHCCCcEEE
Confidence 4556665554 7889998876432 23466666677789999999984
No 256
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=27.27 E-value=75 Score=22.30 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=32.5
Q ss_pred chHHHHHHHhHHhcCCCCccccccEEEcCCHHHHHHHHHhh
Q 027857 149 YNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLEKMEQY 189 (217)
Q Consensus 149 ~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~ 189 (217)
|+.+..+|+.+.+.|+|.. ....+.+++--.++++.++++
T Consensus 33 ~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHHHHH
Confidence 6778888999999999944 667788899999999988765
No 257
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.99 E-value=1.2e+02 Score=27.34 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=34.4
Q ss_pred HhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC--Ccc-----hHHHHHHHhHHhcCC
Q 027857 106 QEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD--GYY-----NSLLALFDNGVQEGF 164 (217)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~--gf~-----~~l~~~l~~~~~~gf 164 (217)
+.+|.+|+ -||=||+-..+..+. ..++||+=+|.. ||. +.+.+.|+++.+..|
T Consensus 67 ~~~Dlvi~-iGGDGTlL~aar~~~-----~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 67 SSMKFAIV-LGGDGTVLSAARQLA-----PCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cCcCEEEE-EeCcHHHHHHHHHhc-----CCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 35675554 578999876664432 357898877753 666 566667777766554
No 258
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=26.77 E-value=1.2e+02 Score=27.09 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=27.5
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
+++|+|.+|......+.=...|+.+.+.|.+.||.++
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 3467777765544455556899999999999999875
No 259
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=26.74 E-value=2.1e+02 Score=26.95 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHCCCeE---EEcCCCcCHHHHHHHHHHHcCCeEEEEecCcc
Q 027857 26 RVFSDAALELGNELVRRKINL---VYGGGSVGLMGLISQTVYAGGCHVLGIIPKAL 78 (217)
Q Consensus 26 ~~~~~~A~~lG~~La~~g~~l---v~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~ 78 (217)
+-....+..|-..+-++--+| |||+|.+=+|=.+.+.|++.||++.=..|...
T Consensus 100 ~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvD 155 (441)
T COG4098 100 PGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVD 155 (441)
T ss_pred hhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCccc
Confidence 344566777888887765555 79999999999999999999998766677654
No 260
>PRK07890 short chain dehydrogenase; Provisional
Probab=26.72 E-value=3.1e+02 Score=22.51 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
++|.|.|+++. ..+.+++.|+++|+.++..+....-.+...+.....+.++..+
T Consensus 6 k~vlItGa~~~--------IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK07890 6 KVVVVSGVGPG--------LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV 59 (258)
T ss_pred CEEEEECCCCc--------HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE
No 261
>PRK05854 short chain dehydrogenase; Provisional
Probab=26.69 E-value=93 Score=27.32 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
+++.|-|+++ + ..+++++.|+++|+.|+.-+..
T Consensus 15 k~~lITGas~-G-------IG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASD-G-------LGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCC-h-------HHHHHHHHHHHCCCEEEEEeCC
Confidence 4555555443 2 3356677777888887765554
No 262
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=26.68 E-value=94 Score=24.26 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=21.5
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 9 SNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 9 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
....+|+|+|.-+.+ ..||+.|.+.||.|+
T Consensus 8 ~~~l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 8 AARLKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp ----EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred CCccEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 445689999977765 578999999999864
No 263
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=26.63 E-value=4e+02 Score=22.60 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=41.3
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHH
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKEL 182 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 182 (217)
.+...||++|.-...-|.-.=++|++.. ++|+|..+..+. .+++++ ...++-.+|++++
T Consensus 258 ~~~~~ad~~v~~s~~e~~~~~~~Ea~a~------G~PvI~~~~~~~----~e~i~~-----------~g~~~~~~~~~~~ 316 (360)
T cd04951 258 AYYNAADLFVLSSAWEGFGLVVAEAMAC------ELPVVATDAGGV----REVVGD-----------SGLIVPISDPEAL 316 (360)
T ss_pred HHHHhhceEEecccccCCChHHHHHHHc------CCCEEEecCCCh----hhEecC-----------CceEeCCCCHHHH
Confidence 4578899877654322222236777765 899998775432 121111 2345556899988
Q ss_pred HHHHHhhc
Q 027857 183 LEKMEQYT 190 (217)
Q Consensus 183 ~~~l~~~~ 190 (217)
.+.+.+..
T Consensus 317 ~~~i~~ll 324 (360)
T cd04951 317 ANKIDEIL 324 (360)
T ss_pred HHHHHHHH
Confidence 88887764
No 264
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=26.62 E-value=77 Score=25.82 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=22.0
Q ss_pred HhcCeeEEccCC-----CCcHHHHHHHHHHHhcC-CCCCcEEEEeCC
Q 027857 106 QEAEAFIALPGG-----YGTMEELLEMITWSQLG-IHKKPVGLLNVD 146 (217)
Q Consensus 106 ~~sda~IvlpGG-----~GTL~El~e~~t~~qlg-~~~kPiilln~~ 146 (217)
..+|.+|+.+|| ..+.......+.+...- ..+||+++++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 456777777775 22222221112222222 568999999763
No 265
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=26.57 E-value=1.3e+02 Score=25.02 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=13.8
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027857 14 VCVFCGSHSGNRRVFSDAALELGNELVRRKINL 46 (217)
Q Consensus 14 I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l 46 (217)
|+|.-.+- .++-+.+....+-+.+.++|+.+
T Consensus 2 igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~ 32 (275)
T cd06320 2 YGVVLKTL--SNEFWRSLKEGYENEAKKLGVSV 32 (275)
T ss_pred eeEEEecC--CCHHHHHHHHHHHHHHHHhCCeE
Confidence 45555321 23444444444444444555554
No 266
>PLN02275 transferase, transferring glycosyl groups
Probab=26.57 E-value=3.4e+02 Score=24.23 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCeeEEcc-C--CCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEE
Q 027857 99 ERKAAMAQEAEAFIALP-G--GYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIIS 175 (217)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp-G--G~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 175 (217)
+.-..+...||++|... . |.|--.=+.|+++. ++||+..+.+|. . .++.+ .....+
T Consensus 298 ~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~------G~PVVa~~~gg~----~----eiv~~-----g~~G~l-- 356 (371)
T PLN02275 298 EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC------GLPVCAVSYSCI----G----ELVKD-----GKNGLL-- 356 (371)
T ss_pred HHHHHHHHhCCEEEEeccccccccccHHHHHHHHC------CCCEEEecCCCh----H----HHccC-----CCCeEE--
Confidence 34445678899998631 2 23334456777765 999999876542 2 22221 111222
Q ss_pred cCCHHHHHHHHHh
Q 027857 176 APSAKELLEKMEQ 188 (217)
Q Consensus 176 ~~d~ee~~~~l~~ 188 (217)
++|++++.+.|.+
T Consensus 357 v~~~~~la~~i~~ 369 (371)
T PLN02275 357 FSSSSELADQLLE 369 (371)
T ss_pred ECCHHHHHHHHHH
Confidence 3578888887764
No 267
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=26.54 E-value=1.1e+02 Score=27.52 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
++|+|.+|-.....+.=...|+.+.+.|.+.+|.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 467777765545566667899999999999999886
No 268
>PRK07109 short chain dehydrogenase; Provisional
Probab=26.53 E-value=3.1e+02 Score=24.34 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
++|.|.|+|+ -..+.+++.|+++|+.|+--+...--.+...+...+.|+++..+
T Consensus 9 k~vlITGas~--------gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v 62 (334)
T PRK07109 9 QVVVITGASA--------GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAV 62 (334)
T ss_pred CEEEEECCCC--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 5788888765 24467788888999988765544222233333334456666555
No 269
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=26.53 E-value=2.3e+02 Score=26.01 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=35.9
Q ss_pred HHHHHHHHH---CCCeEEEcCCC--cCHHHHHHHHHHHcCCeEEEEecCcccCCccCCCCcceEEecCCHHHHHHHHHHh
Q 027857 33 LELGNELVR---RKINLVYGGGS--VGLMGLISQTVYAGGCHVLGIIPKALMPLEISGETVGEVRTVSDMHERKAAMAQE 107 (217)
Q Consensus 33 ~~lG~~La~---~g~~lv~GGg~--~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~~~~~ 107 (217)
.+|+..+.+ +..-||||.+- .|+.+.+.+...++|- .+.+. +. ..+|+-.+.+ ....+..-...
T Consensus 20 ~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i-~~~~f-~~-----v~~np~~~~v----~~~~~~~~~~~ 88 (383)
T PRK09860 20 TDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNI-FSVIY-DG-----TQPNPTTENV----AAGLKLLKENN 88 (383)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCC-eEEEe-CC-----CCCCcCHHHH----HHHHHHHHHcC
Confidence 356666655 34556776532 4777765554444443 33321 11 1112211111 11222222346
Q ss_pred cCeeEEccCCC
Q 027857 108 AEAFIALPGGY 118 (217)
Q Consensus 108 sda~IvlpGG~ 118 (217)
+|++|.++||.
T Consensus 89 ~D~IiaiGGGS 99 (383)
T PRK09860 89 CDSVISLGGGS 99 (383)
T ss_pred CCEEEEeCCch
Confidence 89999999976
No 270
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=26.39 E-value=2.3e+02 Score=23.29 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=23.7
Q ss_pred HHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 104 MAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 104 ~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~ 146 (217)
+...||++|... .|+|+- +.|++.. ++|++..+..
T Consensus 260 ~~~~~d~~i~ps~~e~~~~~--~~Ea~~~------G~PvI~~~~~ 296 (353)
T cd03811 260 YLKAADLFVLSSRYEGFPNV--LLEAMAL------GTPVVATDCP 296 (353)
T ss_pred HHHhCCEEEeCcccCCCCcH--HHHHHHh------CCCEEEcCCC
Confidence 567899887643 334432 5677765 9999988765
No 271
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=26.38 E-value=99 Score=25.45 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=10.6
Q ss_pred HHHHHHHHHHCCCeEEEcC
Q 027857 32 ALELGNELVRRKINLVYGG 50 (217)
Q Consensus 32 A~~lG~~La~~g~~lv~GG 50 (217)
...+++.|+++|+.++--+
T Consensus 18 G~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 18 GQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred HHHHHHHHHHCCCEEEEEc
Confidence 3455556666666655433
No 272
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=26.16 E-value=3e+02 Score=23.21 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=39.1
Q ss_pred HHHHHhcCeeEEcc---CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCC
Q 027857 102 AAMAQEAEAFIALP---GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS 178 (217)
Q Consensus 102 ~~~~~~sda~Ivlp---GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 178 (217)
..+...+|+++... -|+|.. ++|+++. ++|+|..+..|. . + ++..+ ..-.++++
T Consensus 238 ~~~~~~~d~~v~ps~~~E~~~~~--~lEAma~------G~PvI~~~~~~~-~---e----~i~~~-------~~g~l~~~ 294 (335)
T cd03802 238 AELLGNARALLFPILWEEPFGLV--MIEAMAC------GTPVIAFRRGAV-P---E----VVEDG-------VTGFLVDS 294 (335)
T ss_pred HHHHHhCcEEEeCCcccCCcchH--HHHHHhc------CCCEEEeCCCCc-h---h----heeCC-------CcEEEeCC
Confidence 44668899888742 456643 6777765 899999887543 2 1 11111 11123345
Q ss_pred HHHHHHHHHhh
Q 027857 179 AKELLEKMEQY 189 (217)
Q Consensus 179 ~ee~~~~l~~~ 189 (217)
++++.+.|...
T Consensus 295 ~~~l~~~l~~l 305 (335)
T cd03802 295 VEELAAAVARA 305 (335)
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 273
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.96 E-value=2.2e+02 Score=25.10 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHC-CCeEEEcCCCcCHHHHHHHHHHHcCCeEE
Q 027857 26 RVFSDAALELGNELVRR-KINLVYGGGSVGLMGLISQTVYAGGCHVL 71 (217)
Q Consensus 26 ~~~~~~A~~lG~~La~~-g~~lv~GGg~~GlM~a~~~gA~~~GG~vi 71 (217)
-.|.+.|-.+..-+|.+ |+-+..|--+ |-|.-+.+.|.++||..+
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~tn~-~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGTNN-GFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCc-chHHHHHHHHHHhcCcee
Confidence 57888999999999976 5666666655 999999999999999754
No 274
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=25.95 E-value=2.8e+02 Score=23.95 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=37.7
Q ss_pred HHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHH
Q 027857 103 AMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAK 180 (217)
Q Consensus 103 ~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~e 180 (217)
.+...||++|.-. .|+|.- +.|++.. ++|+|..+..+.. ++++ + .....+.-.+|++
T Consensus 266 ~~~~~~d~~v~ps~~E~~~~~--~~EAma~------g~PvI~s~~~~~~----e~i~----~-----~~~G~~~~~~~~~ 324 (371)
T cd04962 266 ELLSIADLFLLPSEKESFGLA--ALEAMAC------GVPVVASNAGGIP----EVVK----H-----GETGFLVDVGDVE 324 (371)
T ss_pred HHHHhcCEEEeCCCcCCCccH--HHHHHHc------CCCEEEeCCCCch----hhhc----C-----CCceEEcCCCCHH
Confidence 4567899887642 344432 5666654 8999998765432 1111 1 1112233335777
Q ss_pred HHHHHHHhhc
Q 027857 181 ELLEKMEQYT 190 (217)
Q Consensus 181 e~~~~l~~~~ 190 (217)
++.+.+.+..
T Consensus 325 ~l~~~i~~l~ 334 (371)
T cd04962 325 AMAEYALSLL 334 (371)
T ss_pred HHHHHHHHHH
Confidence 7777776553
No 275
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=25.88 E-value=1.4e+02 Score=22.73 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL 46 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l 46 (217)
+.|+|++... +.. -...|..|++.||++|..+
T Consensus 1 k~i~v~s~~~-g~G--~t~~a~~lA~~la~~~~~V 32 (157)
T PF13614_consen 1 KVIAVWSPKG-GVG--KTTLALNLAAALARKGKKV 32 (157)
T ss_dssp EEEEEEESST-TSS--HHHHHHHHHHHHHHTTT-E
T ss_pred CEEEEECCCC-CCC--HHHHHHHHHHHHHhcCCCe
Confidence 3577876332 222 2346778888888887543
No 276
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=25.79 E-value=1.7e+02 Score=23.37 Aligned_cols=20 Identities=35% Similarity=0.738 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCeEEEEec
Q 027857 56 MGLISQTVYAGGCHVLGIIP 75 (217)
Q Consensus 56 M~a~~~gA~~~GG~viGV~P 75 (217)
|+.+.+-..+.|..++|-.+
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~ 119 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWP 119 (167)
T ss_pred HHHHHHHHHHcCCeEEceec
Confidence 55555555556777777644
No 277
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.75 E-value=88 Score=26.74 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=27.2
Q ss_pred CeEEEcCCCcCHHHHHHHHHHHcCCeEEEEe
Q 027857 44 INLVYGGGSVGLMGLISQTVYAGGCHVLGII 74 (217)
Q Consensus 44 ~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~ 74 (217)
+.++||.|. |+=.+.++.-.++|.+||.+.
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 467999998 999999999999999999984
No 278
>PRK07775 short chain dehydrogenase; Provisional
Probab=25.70 E-value=3.7e+02 Score=22.68 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=24.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
+++|.|.|+++. ..+.+.+.|+++|+.++.-...
T Consensus 10 ~~~vlVtGa~g~--------iG~~la~~L~~~G~~V~~~~r~ 43 (274)
T PRK07775 10 RRPALVAGASSG--------IGAATAIELAAAGFPVALGARR 43 (274)
T ss_pred CCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeCC
Confidence 457888887652 3467888888999988654443
No 279
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.69 E-value=1.1e+02 Score=29.23 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL 46 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l 46 (217)
+.|+|.||....-.+-.. .||.|+..||+.
T Consensus 267 P~V~Ilcgpgnnggdg~v-----~gRHL~~~G~~~ 296 (453)
T KOG2585|consen 267 PLVAILCGPGNNGGDGLV-----CGRHLAQHGYTP 296 (453)
T ss_pred ceEEEEeCCCCccchhHH-----HHHHHHHcCcee
Confidence 459999987754333332 788889998654
No 280
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=25.63 E-value=1.2e+02 Score=23.36 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=5.9
Q ss_pred eeEEccCCCC
Q 027857 110 AFIALPGGYG 119 (217)
Q Consensus 110 a~IvlpGG~G 119 (217)
..|++.||.+
T Consensus 36 ~~ii~sGg~~ 45 (150)
T cd06259 36 PKLIVSGGQG 45 (150)
T ss_pred CEEEEcCCCC
Confidence 4566666665
No 281
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=25.58 E-value=96 Score=27.00 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=26.0
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 13 RVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
+|+|+||......+.=...++.+-+.|.+.||.++.-...
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~ 40 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDID 40 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeec
Confidence 3666665443333322468889999999999988554443
No 282
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=25.56 E-value=1.8e+02 Score=24.48 Aligned_cols=116 Identities=25% Similarity=0.231 Sum_probs=55.8
Q ss_pred HHHHHHHHCCCeEE-EcCCCcCHHHHHHHHHHHcCCeEEEEecCcccC-Cc-----cCCCCcceEEecC-CHHHHHHHHH
Q 027857 34 ELGNELVRRKINLV-YGGGSVGLMGLISQTVYAGGCHVLGIIPKALMP-LE-----ISGETVGEVRTVS-DMHERKAAMA 105 (217)
Q Consensus 34 ~lG~~La~~g~~lv-~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~-~e-----~~~~~~~~~i~~~-~m~~Rk~~~~ 105 (217)
.|+++=-+.|=.++ -|+|. |-+..-.- ..--.+++++| +.... .+ .....++.+.++. +-++ .+-
T Consensus 26 ~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AI--e~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~---~L~ 98 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAI--ERDEEALELIERNAARFGVDNLEVVEGDAPE---ALP 98 (187)
T ss_pred HHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEE--ecCHHHHHHHHHHHHHhCCCcEEEEeccchH---hhc
Confidence 34443223555554 45555 77765444 33457899999 22110 00 0111233333332 2221 222
Q ss_pred Hh--cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCc--EEEEeCCCcchHHHHHHHhHHhcCC
Q 027857 106 QE--AEAFIALPGGYGTMEELLEMITWSQLGIHKKP--VGLLNVDGYYNSLLALFDNGVQEGF 164 (217)
Q Consensus 106 ~~--sda~IvlpGG~GTL~El~e~~t~~qlg~~~kP--iilln~~gf~~~l~~~l~~~~~~gf 164 (217)
.. -| .|+++|| |+++|+++++.. +=|| -++.|.- --+.+...++.+.+.|+
T Consensus 99 ~~~~~d-aiFIGGg-~~i~~ile~~~~-----~l~~ggrlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 99 DLPSPD-AIFIGGG-GNIEEILEAAWE-----RLKPGGRLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred CCCCCC-EEEECCC-CCHHHHHHHHHH-----HcCcCCeEEEEee-cHHHHHHHHHHHHHcCC
Confidence 33 34 3455666 999999998643 1244 4555542 12334444555555565
No 283
>PLN02740 Alcohol dehydrogenase-like
Probab=25.55 E-value=1.6e+02 Score=26.52 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=42.2
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCC-eEEEEecCcccCCccC-CCCcceEEecC----CHHHHHHHHHH-hcCeeEEcc
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGC-HVLGIIPKALMPLEIS-GETVGEVRTVS----DMHERKAAMAQ-EAEAFIALP 115 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG-~viGV~P~~~~~~e~~-~~~~~~~i~~~----~m~~Rk~~~~~-~sda~Ivlp 115 (217)
...+|+|+|+.|++ +..-|+..|. +|+.+..... ..+.. .-..+..+... ++.++-..+.. ..|++|=..
T Consensus 200 ~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 200 SSVAIFGLGAVGLA--VAEGARARGASKIIGVDINPE-KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcCChH-HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 56778988776665 4556777787 5888743211 11111 01112233222 13332222221 357777777
Q ss_pred CCCCcHHHHHHHH
Q 027857 116 GGYGTMEELLEMI 128 (217)
Q Consensus 116 GG~GTL~El~e~~ 128 (217)
|+..++.+.+..+
T Consensus 277 G~~~~~~~a~~~~ 289 (381)
T PLN02740 277 GNVEVLREAFLST 289 (381)
T ss_pred CChHHHHHHHHhh
Confidence 7766777666544
No 284
>PRK13057 putative lipid kinase; Reviewed
Probab=25.39 E-value=63 Score=28.18 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=23.2
Q ss_pred hcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 107 EAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 107 ~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
..| .|+.-||=||+.|+...+.- .+.|+.++-
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~~-----~~~~lgiiP 81 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALVE-----TGLPLGILP 81 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHhc-----CCCcEEEEC
Confidence 345 56678999999999877632 357888774
No 285
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=25.36 E-value=50 Score=30.90 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=14.9
Q ss_pred eEEEcCCCcCHHHHHHHHHHHcCCeEE
Q 027857 45 NLVYGGGSVGLMGLISQTVYAGGCHVL 71 (217)
Q Consensus 45 ~lv~GGg~~GlM~a~~~gA~~~GG~vi 71 (217)
.+|-|||++|+|-|..- .+.|-+|+
T Consensus 3 viIIGgGaAGl~aA~~a--a~~g~~V~ 27 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA--AEKGARVL 27 (409)
T ss_dssp EEEE--SHHHHHHHHHH--HHTT--EE
T ss_pred EEEECCCHHHHHHHHHH--HhCCCCEE
Confidence 46889999999988875 33444443
No 286
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=25.30 E-value=1.2e+02 Score=23.43 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHH----CCCeEEE---cCC-CcCHHHHHHHHHHHcCC
Q 027857 29 SDAALELGNELVR----RKINLVY---GGG-SVGLMGLISQTVYAGGC 68 (217)
Q Consensus 29 ~~~A~~lG~~La~----~g~~lv~---GGg-~~GlM~a~~~gA~~~GG 68 (217)
.+.|+.+|+.||+ .|+.=|. ||. .-|-+.|+++||.++|-
T Consensus 68 ~~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~Gl 115 (117)
T PRK05593 68 KEAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGL 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhCC
Confidence 4568888888886 4543322 331 24899999999999874
No 287
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=25.19 E-value=1.6e+02 Score=22.60 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=25.2
Q ss_pred HHHHHhcCeeEEc-cCCCCcHHHHHHH-HHHHh---cC-CCCCcEEEEeC
Q 027857 102 AAMAQEAEAFIAL-PGGYGTMEELLEM-ITWSQ---LG-IHKKPVGLLNV 145 (217)
Q Consensus 102 ~~~~~~sda~Ivl-pGG~GTL~El~e~-~t~~q---lg-~~~kPiilln~ 145 (217)
.--+..||++|+. |==.|++.-.+.. +.+.. .+ ..+||+.++..
T Consensus 65 ~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~ 114 (152)
T PF03358_consen 65 YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAV 114 (152)
T ss_dssp HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEE
T ss_pred HhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEE
Confidence 3345779987774 6555555444433 44443 33 46899988743
No 288
>PRK13054 lipid kinase; Reviewed
Probab=25.14 E-value=1.9e+02 Score=25.39 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=23.3
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 108 AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
.| .|+.-||=||++|+...+.-.. ..++.|+.++-
T Consensus 57 ~d-~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgiiP 91 (300)
T PRK13054 57 VA-TVIAGGGDGTINEVATALAQLE-GDARPALGILP 91 (300)
T ss_pred CC-EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEEe
Confidence 45 5678899999999997773211 12245787773
No 289
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=25.07 E-value=71 Score=28.24 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=22.6
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEec
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGCHVLGIIP 75 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P 75 (217)
...+|+|+|..|++ +..-|+..|.+++.+..
T Consensus 167 ~~VlV~G~g~iG~~--a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAHL--TAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHHH--HHHHHHHCCCeEEEEeC
Confidence 46789998766654 55678888888887753
No 290
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=25.01 E-value=1.7e+02 Score=25.11 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=25.6
Q ss_pred HHHHHHHhcCeeEEc-c----CCCCcHHHHHHHHHHHhcC------CCCCcEEEEeCC
Q 027857 100 RKAAMAQEAEAFIAL-P----GGYGTMEELLEMITWSQLG------IHKKPVGLLNVD 146 (217)
Q Consensus 100 Rk~~~~~~sda~Ivl-p----GG~GTL~El~e~~t~~qlg------~~~kPiilln~~ 146 (217)
+-+..++.+|+||+. | +=.|+|=- ++.|..-. ..+||+.++...
T Consensus 83 ~l~~~v~~ADgvii~TPEYn~sipg~LKN---aiDwls~~~~~~~~~~~KpvaivgaS 137 (219)
T TIGR02690 83 ELRQLSEWSEGQVWCSPERHGAITGSQKD---QIDWIPLSVGPVRPTQGKTLAVMQVS 137 (219)
T ss_pred HHHHHHHhCCEEEEeCCccccCcCHHHHH---HHHhcccCcccccccCCCcEEEEEeC
Confidence 344557889988886 3 22334333 34443321 457999988754
No 291
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.90 E-value=3.8e+02 Score=23.64 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=16.2
Q ss_pred EEEcCCCcCHHHHHHHHHHHcCCeEEEEe
Q 027857 46 LVYGGGSVGLMGLISQTVYAGGCHVLGII 74 (217)
Q Consensus 46 lv~GGg~~GlM~a~~~gA~~~GG~viGV~ 74 (217)
++.-||. |-|=.+++ ....+-.++||-
T Consensus 61 vi~iGGD-GTlL~a~~-~~~~~~pi~gIn 87 (277)
T PRK03708 61 IIAIGGD-GTILRIEH-KTKKDIPILGIN 87 (277)
T ss_pred EEEEeCc-HHHHHHHH-hcCCCCeEEEEe
Confidence 3445566 76665555 555566667763
No 292
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=24.90 E-value=1.9e+02 Score=22.29 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=26.6
Q ss_pred HHHHHHH--HHHCCCeE-EEcCCCcCHHHHHHHHHHHcCCeEEEEe
Q 027857 32 ALELGNE--LVRRKINL-VYGGGSVGLMGLISQTVYAGGCHVLGII 74 (217)
Q Consensus 32 A~~lG~~--La~~g~~l-v~GGg~~GlM~a~~~gA~~~GG~viGV~ 74 (217)
++++-+. +...+.-| ++..|.....=.+++.|++.|..||+++
T Consensus 92 ~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 92 ARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3444444 43445444 5666666777788888999999999985
No 293
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=24.73 E-value=1.1e+02 Score=27.37 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHh-----cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEE
Q 027857 96 DMHERKAAMAQE-----AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVG 141 (217)
Q Consensus 96 ~m~~Rk~~~~~~-----sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPii 141 (217)
+-.+|-+-|.+. .||++..-||+|+.. +..-+.+..+..++|+++
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~r-lL~~lD~~~i~~~PK~fi 99 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDDSNE-LLPYLDYELIKKNPKIFI 99 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccCHhh-hhhhcCHHHHhhCCCEEE
Confidence 345565555444 589999999999965 666667767666666544
No 294
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=24.65 E-value=1.7e+02 Score=25.87 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=28.3
Q ss_pred CCCCCCCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 1 MEEEGYTGSNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 1 ~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
||-||-.+..+ +|.|.|++.. ....+.+.|+++|+.++.
T Consensus 1 ~~~~~~~~~~~-~vLVtG~~Gf--------IG~~l~~~L~~~G~~V~~ 39 (353)
T PLN02896 1 MELEGRESATG-TYCVTGATGY--------IGSWLVKLLLQRGYTVHA 39 (353)
T ss_pred CCccccccCCC-EEEEECCCcH--------HHHHHHHHHHHCCCEEEE
Confidence 66677655555 7999997752 456777888889998764
No 295
>PRK07102 short chain dehydrogenase; Provisional
Probab=24.64 E-value=1.3e+02 Score=24.69 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=14.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
++|.|.|+++. ....+.+.|+++|+.++
T Consensus 2 ~~vlItGas~g--------iG~~~a~~l~~~G~~Vi 29 (243)
T PRK07102 2 KKILIIGATSD--------IARACARRYAAAGARLY 29 (243)
T ss_pred cEEEEEcCCcH--------HHHHHHHHHHhcCCEEE
Confidence 45566665441 23445555556666544
No 296
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=24.53 E-value=76 Score=28.80 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=31.8
Q ss_pred CcchHHHHHHHhHHhcCCCCccccc---cEEEcCCHHHHHHHHHh
Q 027857 147 GYYNSLLALFDNGVQEGFIKPSARQ---IIISAPSAKELLEKMEQ 188 (217)
Q Consensus 147 gf~~~l~~~l~~~~~~gfi~~~~~~---~i~~~~d~ee~~~~l~~ 188 (217)
.+|+-+..-+..|+.+|.|+++..+ +-....+++|+-+.+++
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~ 242 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEE 242 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhc
Confidence 4788898889999999999988775 45778999999998876
No 297
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=24.33 E-value=3.1e+02 Score=22.75 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=25.5
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 108 AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~ 146 (217)
.+++|+.+||+=.-+|-...+.- ...+|.|+.+
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~~------~g~vv~L~~~ 104 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLKK------RGIVVYLDAP 104 (172)
T ss_pred CCeEEECCCccccCHHHHHHHHh------CCeEEEEeCC
Confidence 36999999999999998877742 3477778764
No 298
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.22 E-value=1.2e+02 Score=24.82 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=7.3
Q ss_pred HHHHHHHHHCCCeEE
Q 027857 33 LELGNELVRRKINLV 47 (217)
Q Consensus 33 ~~lG~~La~~g~~lv 47 (217)
..+++.|+++|+.++
T Consensus 19 ~~~a~~l~~~G~~vi 33 (253)
T PRK08217 19 RAMAEYLAQKGAKLA 33 (253)
T ss_pred HHHHHHHHHCCCEEE
Confidence 344444555555543
No 299
>PRK09291 short chain dehydrogenase; Provisional
Probab=24.19 E-value=1.1e+02 Score=25.21 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
++|.|.|+++ -..+.+.+.|+++|+.++.....
T Consensus 3 ~~vlVtGasg--------~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 3 KTILITGAGS--------GFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678888765 24466777788889888765543
No 300
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=24.14 E-value=1.5e+02 Score=24.53 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=16.4
Q ss_pred HHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 105 AQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 105 ~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
....|++|+.+....++++....+. ..+.|+++++
T Consensus 58 ~~~vdgiIi~~~~~~~~~~~l~~~~-----~~~iPvv~~~ 92 (272)
T cd06300 58 AQGVDAIIINPASPTALNPVIEEAC-----EAGIPVVSFD 92 (272)
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHH-----HCCCeEEEEe
Confidence 3456666666654433343332221 1245666655
No 301
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=24.13 E-value=1.1e+02 Score=27.20 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=28.3
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~ 146 (217)
.++..||++++|+-..=+++-+-.+... ...++||.++|..
T Consensus 242 ~~v~e~dg~LvlGsSL~v~Sg~r~i~~a---~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 242 EKVKECDGFLVLGSSLMVLSGFRFIRHA---HEKKKPIAIVNIG 282 (305)
T ss_pred HHHhccCceEEechhHHHHHHHHHHHHH---HhhcCcEEEEecC
Confidence 3567899999998776666654433221 1347999999985
No 302
>PRK12367 short chain dehydrogenase; Provisional
Probab=24.03 E-value=1.1e+02 Score=25.95 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=21.8
Q ss_pred CeEEEcCCCcCHHHHHHHHHHHcCCeEEEEe
Q 027857 44 INLVYGGGSVGLMGLISQTVYAGGCHVLGII 74 (217)
Q Consensus 44 ~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~ 74 (217)
..|||||+. |+=.++++...+.|..|+.+.
T Consensus 16 ~~lITGas~-gIG~ala~~l~~~G~~Vi~~~ 45 (245)
T PRK12367 16 RIGITGASG-ALGKALTKAFRAKGAKVIGLT 45 (245)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHCCCEEEEEE
Confidence 457777777 777777777777777776663
No 303
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=24.01 E-value=42 Score=30.97 Aligned_cols=72 Identities=25% Similarity=0.192 Sum_probs=39.4
Q ss_pred HHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCHHHHHH
Q 027857 105 AQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSAKELLE 184 (217)
Q Consensus 105 ~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~ 184 (217)
+.-+|++| --||=||+-=.+ ..+-...||||=+|++. .-.+|.+.- .-++.+++.+++.
T Consensus 103 i~waD~Vi-svGGDGTfL~Aa-----srv~~~~~PViGvNtDP-----------~~Seg~lcL----~~~~~~n~~~al~ 161 (395)
T KOG4180|consen 103 IRWADMVI-SVGGDGTFLLAA-----SRVIDDSKPVIGVNTDP-----------TGSEGHLCL----PDKYPSNPAGALC 161 (395)
T ss_pred CchhhEEE-EecCccceeehh-----hhhhccCCceeeecCCC-----------CcCcceEec----cccCCCCcHHHHH
Confidence 34567443 458899964222 22223479999999762 112222210 1133467778777
Q ss_pred HHHhhcCCCCCCCCCccccccc
Q 027857 185 KMEQYTPAHEHVAPHESWQMEQ 206 (217)
Q Consensus 185 ~l~~~~~~~~~~~~~~~w~~~~ 206 (217)
.+. ..+|.|+.|+
T Consensus 162 k~~---------sgnF~wv~r~ 174 (395)
T KOG4180|consen 162 KLT---------SGNFEWVLRQ 174 (395)
T ss_pred HHH---------hccHHHhhhh
Confidence 764 3457787554
No 304
>PRK07035 short chain dehydrogenase; Provisional
Probab=23.95 E-value=1.2e+02 Score=25.10 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=17.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGG 50 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GG 50 (217)
++|.|.|+++. ....+++.|+++|+.++--+
T Consensus 9 k~vlItGas~g--------IG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASRG--------IGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEEe
Confidence 35666665541 33456666666777665433
No 305
>PRK06194 hypothetical protein; Provisional
Probab=23.91 E-value=4.3e+02 Score=22.17 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
+.++|-|.|+++ -..+.+.+.|+++|+.++.-+......+...+.....+.++..+
T Consensus 5 ~~k~vlVtGasg--------gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (287)
T PRK06194 5 AGKVAVITGAAS--------GFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGV 60 (287)
T ss_pred CCCEEEEeCCcc--------HHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEE
No 306
>PRK08177 short chain dehydrogenase; Provisional
Probab=23.90 E-value=1.4e+02 Score=24.36 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGG 50 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GG 50 (217)
|++|.|.|+++ -..+.+.+.|+++|+.|+.-+
T Consensus 1 ~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 1 KRTALIIGASR--------GLGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CCEEEEeCCCc--------hHHHHHHHHHHhCCCEEEEEe
Confidence 35677777655 234567777777788776444
No 307
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=23.90 E-value=3.8e+02 Score=24.46 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=41.5
Q ss_pred HHHHHhcCeeEEcc--CC----CCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEE
Q 027857 102 AAMAQEAEAFIALP--GG----YGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIIS 175 (217)
Q Consensus 102 ~~~~~~sda~Ivlp--GG----~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 175 (217)
..+...||++|.-. +. -|.-.=+.|++.. ++|||..+..|. .++++ ......+.-
T Consensus 293 ~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~------G~PVI~t~~~g~----~E~v~---------~~~~G~lv~ 353 (406)
T PRK15427 293 KAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAV------GIPVVSTLHSGI----PELVE---------ADKSGWLVP 353 (406)
T ss_pred HHHHHhCCEEEECCccCCCCCccCccHHHHHHHhC------CCCEEEeCCCCc----hhhhc---------CCCceEEeC
Confidence 44678899887632 11 2333446777765 999999876542 22211 112233444
Q ss_pred cCCHHHHHHHHHhhcC
Q 027857 176 APSAKELLEKMEQYTP 191 (217)
Q Consensus 176 ~~d~ee~~~~l~~~~~ 191 (217)
.+|++++.+.|.+...
T Consensus 354 ~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 354 ENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5688888888876643
No 308
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=23.84 E-value=2.7e+02 Score=22.83 Aligned_cols=36 Identities=22% Similarity=0.541 Sum_probs=23.1
Q ss_pred CCeEEEcCCCcC---HHHHHHHHHHHcCCeEEEEecCcc
Q 027857 43 KINLVYGGGSVG---LMGLISQTVYAGGCHVLGIIPKAL 78 (217)
Q Consensus 43 g~~lv~GGg~~G---lM~a~~~gA~~~GG~viGV~P~~~ 78 (217)
.+.+|+|...+| +|.++.+...+.|.+|+++.|..-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~ 57 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNK 57 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHH
Confidence 477777766555 666777766667777788777653
No 309
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=23.83 E-value=1.6e+02 Score=25.56 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 13 RVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
+|+|.+|-....++.=...++.+.+.|.+.|+.++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~ 36 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVT 36 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEE
Confidence 46665544333455556899999999999999763
No 310
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=23.55 E-value=2.2e+02 Score=21.26 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=36.9
Q ss_pred CCCCcEEEEeCCCcchHHHHHHHh-HHhcCCCCccccccEEEcCCHHHHHHHHHhhc
Q 027857 135 IHKKPVGLLNVDGYYNSLLALFDN-GVQEGFIKPSARQIIISAPSAKELLEKMEQYT 190 (217)
Q Consensus 135 ~~~kPiilln~~gf~~~l~~~l~~-~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~~ 190 (217)
-+=+|++..+.+|.-+.+++-++. +.....|+-+-...- -+|..|+.+.|.+..
T Consensus 14 h~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~--~~~~~e~a~~i~~~~ 68 (95)
T TIGR00253 14 HHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATED--REDKTLIAEALVKET 68 (95)
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCC--hhHHHHHHHHHHHHH
Confidence 345899999999999999999874 545556554422211 246777887777643
No 311
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.40 E-value=3.8e+02 Score=26.68 Aligned_cols=152 Identities=19% Similarity=0.254 Sum_probs=77.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCC-----------
Q 027857 13 RVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPL----------- 81 (217)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~----------- 81 (217)
-|+|+|--........+..|++||+...- ....|||||+ +..-.++ ++.|...|--+|..+...
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl-~~v~~ygGgs---k~eQ~k~-Lk~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGL-RVVAVYGGGS---KWEQSKE-LKEGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccc-eEEEeecCCc---HHHHHHh-hhcCCeEEEechHHHHHHHHhhcccceee
Confidence 36666633322233445667777765422 2345788877 4444443 447777776677665321
Q ss_pred ------ccC------------------CCCcceEEecCCHHHHHHHHHHh--cCeeEEccCCCCcHHHHHHHHHHHhcCC
Q 027857 82 ------EIS------------------GETVGEVRTVSDMHERKAAMAQE--AEAFIALPGGYGTMEELLEMITWSQLGI 135 (217)
Q Consensus 82 ------e~~------------------~~~~~~~i~~~~m~~Rk~~~~~~--sda~IvlpGG~GTL~El~e~~t~~qlg~ 135 (217)
|.. .+.-..+....+|..+-..+++. +|-+=++-|-+|.-+|= +|
T Consensus 372 S~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~d---IT------ 442 (731)
T KOG0339|consen 372 SYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANED---IT------ 442 (731)
T ss_pred eEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccc---hh------
Confidence 000 01112345556787666666553 78777777755544431 11
Q ss_pred CCCcEEEE-eCCCcchHHHHHHHhHHhcCCCCccccccEEE---cCCHHHHHHHHH
Q 027857 136 HKKPVGLL-NVDGYYNSLLALFDNGVQEGFIKPSARQIIIS---APSAKELLEKME 187 (217)
Q Consensus 136 ~~kPiill-n~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~---~~d~ee~~~~l~ 187 (217)
--|.++ +..--|..|+..|..+.++| +.++| -.|.+++.+.|+
T Consensus 443 --Q~V~V~~s~~~Kl~wl~~~L~~f~S~g-------kvlifVTKk~~~e~i~a~Lk 489 (731)
T KOG0339|consen 443 --QTVSVCPSEEKKLNWLLRHLVEFSSEG-------KVLIFVTKKADAEEIAANLK 489 (731)
T ss_pred --heeeeccCcHHHHHHHHHHhhhhccCC-------cEEEEEeccCCHHHHHHHhc
Confidence 122233 33345555555554444433 22333 346677766664
No 312
>PRK09267 flavodoxin FldA; Validated
Probab=23.37 E-value=1.2e+02 Score=24.03 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=16.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHH
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNEL 39 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~L 39 (217)
|++|+|+.+|..++.. +.|+.+++.|
T Consensus 1 mmki~IiY~S~tGnT~---~vA~~Ia~~l 26 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE---DIAKMIQKKL 26 (169)
T ss_pred CCeEEEEEECCCChHH---HHHHHHHHHh
Confidence 4578888888877432 3455566555
No 313
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=23.32 E-value=4.5e+02 Score=22.08 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=37.9
Q ss_pred HHHHHhcCeeEEcc--CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCCH
Q 027857 102 AAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPSA 179 (217)
Q Consensus 102 ~~~~~~sda~Ivlp--GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 179 (217)
..+...||++|.-. .|+|.- ++|++.. ++|+|..+..++-+ + + . ....+...+|+
T Consensus 267 ~~~~~~~d~~l~ps~~e~~~~~--~~Ea~a~------G~pvI~~~~~~~~e-~---~----~-------~~~~~~~~~~~ 323 (365)
T cd03809 267 AALYRGARAFVFPSLYEGFGLP--VLEAMAC------GTPVIASNISSLPE-V---A----G-------DAALYFDPLDP 323 (365)
T ss_pred HHHHhhhhhhcccchhccCCCC--HHHHhcC------CCcEEecCCCCccc-e---e----c-------CceeeeCCCCH
Confidence 34567788665431 222321 5666654 89999877643321 1 1 1 12345566788
Q ss_pred HHHHHHHHhhc
Q 027857 180 KELLEKMEQYT 190 (217)
Q Consensus 180 ee~~~~l~~~~ 190 (217)
+++.+.|.+..
T Consensus 324 ~~~~~~i~~l~ 334 (365)
T cd03809 324 EALAAAIERLL 334 (365)
T ss_pred HHHHHHHHHHh
Confidence 98888887753
No 314
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=23.30 E-value=2.7e+02 Score=23.28 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcC-CCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcC
Q 027857 99 ERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLG-IHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAP 177 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg-~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 177 (217)
++.....+.+|.+|+++ -.++.. -++.+...- ..+.|++++|.+.-+ ++ ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTP---------------LS--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCC---------------CC--CcCCEEEEC
Confidence 34444556799888865 333333 223332221 357899999975221 11 223456778
Q ss_pred CHHHHHHHH
Q 027857 178 SAKELLEKM 186 (217)
Q Consensus 178 d~ee~~~~l 186 (217)
|..+++..|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 899988876
No 315
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.29 E-value=1.7e+02 Score=26.12 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=63.3
Q ss_pred CCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccCCC
Q 027857 7 TGSNFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEISGE 86 (217)
Q Consensus 7 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~~~ 86 (217)
.-+.+++|+|+.- .. +...+.+.++.++|.++|+.++.--.. +... +. +.
T Consensus 6 ~~~~~~~i~ii~~--~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~----------~~~~-----~~-~~---------- 55 (287)
T PRK14077 6 DHKNIKKIGLVTR--PN--VSLDKEILKLQKILSIYKVEILLEKES----------AEIL-----DL-PG---------- 55 (287)
T ss_pred ccccCCEEEEEeC--Cc--HHHHHHHHHHHHHHHHCCCEEEEecch----------hhhh-----cc-cc----------
Confidence 3345677999963 22 356688899999999999988874321 1100 00 00
Q ss_pred CcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC--Ccc-----hHHHHHHHhH
Q 027857 87 TVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD--GYY-----NSLLALFDNG 159 (217)
Q Consensus 87 ~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~--gf~-----~~l~~~l~~~ 159 (217)
.. . .. +.+.+|.+ +.-||=||+--.+..+ ..+++||+=+|.. ||. +.+.+.++++
T Consensus 56 -~~-------~---~~-~~~~~Dlv-i~iGGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i 117 (287)
T PRK14077 56 -YG-------L---DE-LFKISDFL-ISLGGDGTLISLCRKA-----AEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAF 117 (287)
T ss_pred -cc-------h---hh-cccCCCEE-EEECCCHHHHHHHHHh-----cCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHH
Confidence 00 0 00 11246754 4457899976544333 2357898877753 576 5566666666
Q ss_pred HhcCC
Q 027857 160 VQEGF 164 (217)
Q Consensus 160 ~~~gf 164 (217)
.+..|
T Consensus 118 ~~g~y 122 (287)
T PRK14077 118 FQGEF 122 (287)
T ss_pred HcCCC
Confidence 55443
No 316
>PRK08339 short chain dehydrogenase; Provisional
Probab=23.21 E-value=1.3e+02 Score=25.35 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=9.2
Q ss_pred HHHHHHHHHCCCeEEE
Q 027857 33 LELGNELVRRKINLVY 48 (217)
Q Consensus 33 ~~lG~~La~~g~~lv~ 48 (217)
+.+++.|+++|+.++-
T Consensus 22 ~aia~~l~~~G~~V~~ 37 (263)
T PRK08339 22 FGVARVLARAGADVIL 37 (263)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 4455556666666544
No 317
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=23.20 E-value=1.2e+02 Score=26.51 Aligned_cols=44 Identities=18% Similarity=0.087 Sum_probs=21.2
Q ss_pred cceEEE-EcCCCCCCChH--HHHHHHHHHHHHH---HCCC--eEE-EcCCCcC
Q 027857 11 FKRVCV-FCGSHSGNRRV--FSDAALELGNELV---RRKI--NLV-YGGGSVG 54 (217)
Q Consensus 11 ~~~I~V-fggs~~~~~~~--~~~~A~~lG~~La---~~g~--~lv-~GGg~~G 54 (217)
|+.|-| ||||+...++. -.+.-+++.+.|+ ++|+ .|| +|++..|
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g 61 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAG 61 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCccccc
Confidence 444555 89988762210 1222344444444 4554 344 6655433
No 318
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.16 E-value=1.1e+02 Score=25.61 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=28.0
Q ss_pred CCCCCCCCCcceEEEEcCCCCCC--ChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 2 EEEGYTGSNFKRVCVFCGSHSGN--RRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 2 ~~~~~~~~~~~~I~Vfggs~~~~--~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
.+.|..++++ .+-||||++.-. ...-.+.+...=+.|.++|+.|+.
T Consensus 83 ~~~Ga~~~~l-~aKifGGA~m~~~~~~IG~rNi~~a~~~L~~~gI~i~a 130 (184)
T PRK13497 83 LKQGARRDRL-EAKIFGGAKTIATFSNVGEQNAAFAMQFLRDEGIPVVG 130 (184)
T ss_pred HHcCCCHHHE-EEEEEeCchhccccccHHHHHHHHHHHHHHHcCCcEEE
Confidence 4556655544 788888887432 123344444455567788888873
No 319
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=23.13 E-value=81 Score=26.83 Aligned_cols=39 Identities=15% Similarity=0.040 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCC-CChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027857 11 FKRVCVFCGSHSG-NRRVFSDAALELGNELVRRKINLVYGG 50 (217)
Q Consensus 11 ~~~I~Vfggs~~~-~~~~~~~~A~~lG~~La~~g~~lv~GG 50 (217)
|++|+|+.++-.. ..-+.. .+..--..|-+.|+.+..=+
T Consensus 1 ~kkVlills~~~~~dG~e~~-E~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIH-EAVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CCEEEEEEccCCCCCCEehh-HHHHHHHHHHHCCCEEEEEe
Confidence 3578888753211 112222 22344566778898886633
No 320
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.12 E-value=3.2e+02 Score=23.71 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe----------------EEEcCCCcCHHHHHHHHHHHcCCeEEEEe
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKIN----------------LVYGGGSVGLMGLISQTVYAGGCHVLGII 74 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~----------------lv~GGg~~GlM~a~~~gA~~~GG~viGV~ 74 (217)
|+++|+. ++ .-.+.+.++-+.|.++|+. +++=||. |-|=-+++-+ +-.++||-
T Consensus 1 m~~~~~~--~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIFY--RE----EKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEEe--Cc----cHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEEe
Confidence 4577772 22 2346677788888776642 4454666 6664444433 67788874
No 321
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=23.04 E-value=3.3e+02 Score=23.45 Aligned_cols=41 Identities=27% Similarity=0.258 Sum_probs=26.5
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHH-hcC-CCCCcEEEEeCCCcc
Q 027857 108 AEAFIALPGGYGTMEELLEMITWS-QLG-IHKKPVGLLNVDGYY 149 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~-qlg-~~~kPiilln~~gf~ 149 (217)
.-+.|+|+||. |...+++.+.-. +.+ +.-+.|.+++.+.+|
T Consensus 33 ~~~~i~lsgGs-tP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~ 75 (259)
T TIGR00502 33 RPFVLGLPTGG-TPIGTYKQLIELHQAGKISFQNVTTFNMDEYA 75 (259)
T ss_pred CceEEEEcCCC-ChHHHHHHHHHHhhccCCchhHeEEEeCeecC
Confidence 34689999986 566677766532 112 334677777777776
No 322
>PRK07023 short chain dehydrogenase; Provisional
Probab=23.01 E-value=1.4e+02 Score=24.47 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=0.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
|++|.|.|+++ -..+.+++.|+++|+.++.
T Consensus 1 ~~~vlItGasg--------giG~~ia~~l~~~G~~v~~ 30 (243)
T PRK07023 1 AVRAIVTGHSR--------GLGAALAEQLLQPGIAVLG 30 (243)
T ss_pred CceEEEecCCc--------chHHHHHHHHHhCCCEEEE
No 323
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=22.92 E-value=5.9e+02 Score=23.31 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=41.8
Q ss_pred cceEEEEc-CCCCCCChHHHHHHHHHHHHHHH-CCCeEEEc----CCCcCHHHHHHHHHHHcCCeEEEEecCcccC
Q 027857 11 FKRVCVFC-GSHSGNRRVFSDAALELGNELVR-RKINLVYG----GGSVGLMGLISQTVYAGGCHVLGIIPKALMP 80 (217)
Q Consensus 11 ~~~I~Vfg-gs~~~~~~~~~~~A~~lG~~La~-~g~~lv~G----Gg~~GlM~a~~~gA~~~GG~viGV~P~~~~~ 80 (217)
++.|-+.| |||. +...+.-++|++.+.+ .+..+.++ +.| -+.+++. ...+.|.+-+-|+|-++.+
T Consensus 6 ~~aiLLvgHGSRd---p~~~~~~~~La~~l~~~~~~~V~~aFLE~~eP-sl~eal~-~l~~~G~~~IvVvPlFL~~ 76 (335)
T PRK05782 6 NTAIILIGHGSRR---ETFNSDMEGMANYLKEKLGVPIYLTYNEFAEP-NWRSLLN-EIIKEGYRRVIIALAFLGR 76 (335)
T ss_pred CceEEEEecCCCC---hHHHHHHHHHHHHHHhccCCceEEEEeccCCC-CHHHHHH-HHHHCCCCEEEEecccccC
Confidence 33444444 5654 6666777788888864 46666666 556 6776664 4556677778888876644
No 324
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.87 E-value=3.5e+02 Score=24.58 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.5
Q ss_pred HHhcCeeEEccCCC
Q 027857 105 AQEAEAFIALPGGY 118 (217)
Q Consensus 105 ~~~sda~IvlpGG~ 118 (217)
...+|++|+++||.
T Consensus 81 ~~~~d~IIaiGGGS 94 (374)
T cd08189 81 ENGCDAILAVGGGS 94 (374)
T ss_pred hcCCCEEEEeCCcc
Confidence 45689999999976
No 325
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=22.86 E-value=2.5e+02 Score=22.08 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=33.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC---C-cCHHHHHHHHHHHcC
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGG---S-VGLMGLISQTVYAGG 67 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg---~-~GlM~a~~~gA~~~G 67 (217)
+++|.++|......+| .|+.+.+.++..++.+-+.|- + .++-.-+.+...+.|
T Consensus 2 ~~kVLFVC~gN~cRSp----mAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~G 58 (139)
T COG0394 2 MMKVLFVCTGNICRSP----MAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHG 58 (139)
T ss_pred CceEEEEcCCCcccCH----HHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcC
Confidence 5689999977766553 567788888777888877662 1 134444444444444
No 326
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=22.85 E-value=2.1e+02 Score=24.24 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=19.5
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCCC--eEEEcCCC
Q 027857 17 FCGSHSGNRRVFSDAALELGNELVRRKI--NLVYGGGS 52 (217)
Q Consensus 17 fggs~~~~~~~~~~~A~~lG~~La~~g~--~lv~GGg~ 52 (217)
||||...+.+...+.++.+.+. .+.|+ .+|.||+.
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~viV~sg~g 42 (239)
T cd04246 6 FGGTSVADIERIKRVAERIKKA-VKKGYQVVVVVSAMG 42 (239)
T ss_pred ECccccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCCC
Confidence 7888875444455555555443 33444 46777544
No 327
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=22.75 E-value=5.3e+02 Score=22.66 Aligned_cols=30 Identities=37% Similarity=0.467 Sum_probs=20.6
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEe
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGCHVLGII 74 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~ 74 (217)
...+|+|+|+.|++ +..-|+..|.+++.+.
T Consensus 168 ~~VlV~G~G~vG~~--a~~~a~~~G~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGGY--MVQTAKAMGAAVVAID 197 (349)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCeEEEEc
Confidence 45678888665554 5666777788887763
No 328
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=22.64 E-value=6e+02 Score=23.28 Aligned_cols=130 Identities=17% Similarity=0.226 Sum_probs=71.0
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHH---HHHHHHHcCCe-EEEEecCcc------c-CC-cc--CCCC
Q 027857 22 SGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGL---ISQTVYAGGCH-VLGIIPKAL------M-PL-EI--SGET 87 (217)
Q Consensus 22 ~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a---~~~gA~~~GG~-viGV~P~~~------~-~~-e~--~~~~ 87 (217)
..||.... .-.+.+-..|+.|..+|. |++.|.- +.+.+++..|. -++|+.-.- + |. +- ..+.
T Consensus 135 idND~Tl~-~L~~~Avs~A~AGADiVA---PSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~ 210 (320)
T cd04823 135 ILNDETVE-VLCKQALVQAEAGADIVA---PSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPR 210 (320)
T ss_pred CcCHHHHH-HHHHHHHHHHHhCCCEEE---cccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCC
Confidence 33455554 444677888999999995 6688864 44557776664 466653211 0 11 00 0111
Q ss_pred cce-EEecCCHHHHHHH-------HHHhcCeeEEccCCCCcHHHHHHHHHHHhcC-CCCCcEEEEeCCCcchHHHHHHHh
Q 027857 88 VGE-VRTVSDMHERKAA-------MAQEAEAFIALPGGYGTMEELLEMITWSQLG-IHKKPVGLLNVDGYYNSLLALFDN 158 (217)
Q Consensus 88 ~~~-~i~~~~m~~Rk~~-------~~~~sda~IvlpGG~GTL~El~e~~t~~qlg-~~~kPiilln~~gf~~~l~~~l~~ 158 (217)
+.+ --.--+...|+.. +.+-+|.+.|=||.. ...++. .+. ..+.|+..++.+|=|. .++.
T Consensus 211 fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~-----YLDIi~--~~k~~~~lPvaaYqVSGEYa----Mika 279 (320)
T cd04823 211 KGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMP-----YLDIIR--RVKDEFGVPTFAYQVSGEYA----MLKA 279 (320)
T ss_pred CCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch-----HHHHHH--HHHHhcCCCEEEEEccHHHH----HHHH
Confidence 111 0000111222222 234499999999954 222222 222 3579999999988664 4455
Q ss_pred HHhcCCCC
Q 027857 159 GVQEGFIK 166 (217)
Q Consensus 159 ~~~~gfi~ 166 (217)
..+.|.++
T Consensus 280 Aa~~G~~d 287 (320)
T cd04823 280 AAQNGWLD 287 (320)
T ss_pred HHHcCCCc
Confidence 66677765
No 329
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=22.62 E-value=6.3e+02 Score=23.52 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhcCeeEEccCCCCcHHHHHH
Q 027857 96 DMHERKAAMAQEAEAFIALPGGYGTMEELLE 126 (217)
Q Consensus 96 ~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e 126 (217)
...++...+++.||++|..+-=+|+=.++..
T Consensus 327 ~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~~ 357 (402)
T PRK09536 327 STRAEATDLIIAADAVVAAGVAAAARSGVIG 357 (402)
T ss_pred HHHHHHHHHHHhCCEEEECCCccCCCCCchh
Confidence 4567888899999999997766666555543
No 330
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=22.57 E-value=6e+02 Score=23.27 Aligned_cols=130 Identities=15% Similarity=0.259 Sum_probs=72.5
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHH---HHHHHHHHcCCe--EEEEecCcc------c-CC-cc--CCC
Q 027857 22 SGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMG---LISQTVYAGGCH--VLGIIPKAL------M-PL-EI--SGE 86 (217)
Q Consensus 22 ~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~---a~~~gA~~~GG~--viGV~P~~~------~-~~-e~--~~~ 86 (217)
..||...... .+.+-..|+.|..+|. |+..|. .+.|.+++..|. -++|+.-.- + |. +- ..+
T Consensus 134 vdND~Tl~~L-~k~Avs~A~AGADiVA---PSdMMDGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap 209 (320)
T cd04824 134 INNEASVKRL-AEVALAYAKAGAHIVA---PSDMMDGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAP 209 (320)
T ss_pred CcCHHHHHHH-HHHHHHHHHhCCCEEe---cccccccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCC
Confidence 4455555433 4577778999999995 557775 456777777776 478763221 0 11 00 011
Q ss_pred Ccce-EEecCCHHHHHHHH-------HHhcCeeEEccCCCCcHHHHHHHHHHHhcC-CC-CCcEEEEeCCCcchHHHHHH
Q 027857 87 TVGE-VRTVSDMHERKAAM-------AQEAEAFIALPGGYGTMEELLEMITWSQLG-IH-KKPVGLLNVDGYYNSLLALF 156 (217)
Q Consensus 87 ~~~~-~i~~~~m~~Rk~~~-------~~~sda~IvlpGG~GTL~El~e~~t~~qlg-~~-~kPiilln~~gf~~~l~~~l 156 (217)
.+.+ --.--+...|...| .+-+|.+.|=||.. -..++. .+. .. +.|+..++.+|=|. .+
T Consensus 210 ~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~-----YLDIi~--~~k~~~~~~PvaaYqVSGEYa----Mi 278 (320)
T cd04824 210 SFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTP-----YLDIVR--EAKDKHPDLPLAVYHVSGEYA----ML 278 (320)
T ss_pred CCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCch-----HHHHHH--HHHHhccCCCEEEEEccHHHH----HH
Confidence 1111 00001112222222 34489999999965 222332 222 34 78999999988664 44
Q ss_pred HhHHhcCCCC
Q 027857 157 DNGVQEGFIK 166 (217)
Q Consensus 157 ~~~~~~gfi~ 166 (217)
+...+.|.++
T Consensus 279 kaAa~~G~iD 288 (320)
T cd04824 279 HAAAEAGAFD 288 (320)
T ss_pred HHHHHcCCCc
Confidence 5566777775
No 331
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.53 E-value=1.3e+02 Score=24.71 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCCCCCCCCcceEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 2 EEEGYTGSNFKRVCVFCGSHSGN---RRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 2 ~~~~~~~~~~~~I~Vfggs~~~~---~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
.+.|..++++ .+-||||++.-. ...-.+.++..=+.|+++|+.|+.
T Consensus 84 ~~~Ga~~~~l-~aKifGGa~m~~~~~~~IG~rNv~~a~~~L~~~gI~i~a 132 (163)
T PRK13494 84 LENGASKSNL-KAKLFGGTNFMAKGTIKVGLENSEFAVNTLNKYGIPILA 132 (163)
T ss_pred HHcCCCHHHe-EEEEEeCcccCCcccCChHHHHHHHHHHHHHHcCCcEEE
Confidence 4566665554 788899988653 223345555555678888999874
No 332
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=22.52 E-value=96 Score=27.65 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=21.9
Q ss_pred CeeEEccCCCCcHHHHHHHHHHHhcCCCCCc-EEEE
Q 027857 109 EAFIALPGGYGTMEELLEMITWSQLGIHKKP-VGLL 143 (217)
Q Consensus 109 da~IvlpGG~GTL~El~e~~t~~qlg~~~kP-iill 143 (217)
--.|+..||=||++|+...+.- ++.| +.++
T Consensus 59 ~D~via~GGDGTv~evingl~~-----~~~~~Lgil 89 (301)
T COG1597 59 YDTVIAAGGDGTVNEVANGLAG-----TDDPPLGIL 89 (301)
T ss_pred CCEEEEecCcchHHHHHHHHhc-----CCCCceEEe
Confidence 3467778999999999977753 4555 6666
No 333
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=22.51 E-value=71 Score=23.53 Aligned_cols=47 Identities=13% Similarity=0.367 Sum_probs=31.4
Q ss_pred EeCCCcchHHHHHHHhHHhcCCCCccccccEEEc-----CCHHHHHHHHHhhcCCC
Q 027857 143 LNVDGYYNSLLALFDNGVQEGFIKPSARQIIISA-----PSAKELLEKMEQYTPAH 193 (217)
Q Consensus 143 ln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~-----~d~ee~~~~l~~~~~~~ 193 (217)
+..+.+.+.++..+.+++.- |.-.++|+.- ++|+.+++.+++++...
T Consensus 27 ~~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa~n 78 (85)
T PF01320_consen 27 LKTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRASN 78 (85)
T ss_dssp SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHHHc
Confidence 34456788888888776541 3344555543 58999999999987654
No 334
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=22.47 E-value=57 Score=30.61 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCC----------cCHHHHHHHHHHHcCCeEEE
Q 027857 29 SDAALELGNELVRRKINLVYGGGS----------VGLMGLISQTVYAGGCHVLG 72 (217)
Q Consensus 29 ~~~A~~lG~~La~~g~~lv~GGg~----------~GlM~a~~~gA~~~GG~viG 72 (217)
.+.|+.|++.|.++|+.|++||-. .|+-+.-+.-+++.-|.++-
T Consensus 306 v~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 306 VKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 456788899999999999987743 36666667777776665554
No 335
>PRK11096 ansB L-asparaginase II; Provisional
Probab=22.43 E-value=1.2e+02 Score=27.93 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=33.3
Q ss_pred hcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC-----CCcchHHHHHHH
Q 027857 107 EAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV-----DGYYNSLLALFD 157 (217)
Q Consensus 107 ~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~-----~gf~~~l~~~l~ 157 (217)
..|+|||.- |.-||+|....+.+. +. .+|||||.+. .-..|...++++
T Consensus 100 ~~dGiVVtH-GTDTme~tA~~Ls~~-~~-~~kPVVlTGAmrP~~~~~sDg~~NL~~ 152 (347)
T PRK11096 100 KTDGFVITH-GTDTMEETAYFLDLT-VK-CDKPVVLVGAMRPSTAMSADGPLNLYN 152 (347)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHh-cc-CCCCEEEeCCCCCCCCcCCchHHHHHH
Confidence 356777664 589999999998874 33 4899999873 224555555444
No 336
>PRK00861 putative lipid kinase; Reviewed
Probab=22.28 E-value=1.7e+02 Score=25.65 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=22.2
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEE
Q 027857 108 AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLL 143 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiill 143 (217)
.| .|+.-||=||++|+...+.- ++.|+.++
T Consensus 58 ~d-~vv~~GGDGTl~evv~~l~~-----~~~~lgvi 87 (300)
T PRK00861 58 AE-LIIASGGDGTLSAVAGALIG-----TDIPLGII 87 (300)
T ss_pred CC-EEEEECChHHHHHHHHHHhc-----CCCcEEEE
Confidence 35 56678999999999977742 35678777
No 337
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=22.24 E-value=1.1e+02 Score=25.54 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=20.3
Q ss_pred EcCCCCCCC---hHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 17 FCGSHSGNR---RVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 17 fggs~~~~~---~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
+|||..... +...+.|+++.+...++...||.|||.
T Consensus 5 lGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~ 43 (221)
T TIGR02076 5 LGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGK 43 (221)
T ss_pred echhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcH
Confidence 566666432 334445555554433346778998876
No 338
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=1.4e+02 Score=28.19 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=28.0
Q ss_pred HHHHHHHCCCeE-EEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCC
Q 027857 35 LGNELVRRKINL-VYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPL 81 (217)
Q Consensus 35 lG~~La~~g~~l-v~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~ 81 (217)
+.++..+..|.| |-|||..|| |.++.|...|.+|.-+ ++..|.
T Consensus 11 l~~~~~sydyDLIviGgGSgGL--acaKeAa~~G~kV~~l--DfV~Pt 54 (503)
T KOG4716|consen 11 LARLFSSYDYDLIVIGGGSGGL--ACAKEAADLGAKVACL--DFVKPT 54 (503)
T ss_pred hhhhcccCCccEEEEcCCcchh--hHHHHHHhcCCcEEEE--eecccC
Confidence 344555667776 667777565 5667788888888766 444443
No 339
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=22.22 E-value=1.3e+02 Score=25.19 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGG 51 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg 51 (217)
+++-|.|+++ -..+.+++.|+++|+.++.-+.
T Consensus 9 k~~lItGas~--------gIG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 9 KVAIITGCNT--------GLGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEecC
Confidence 3556666544 2345666777777777764333
No 340
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=22.03 E-value=5.1e+02 Score=22.25 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=64.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCc--cCCC
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL--VYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLE--ISGE 86 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l--v~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e--~~~~ 86 (217)
.+.|.|.-+-+. +.|..+.+.|.+.|+.. ||==.+ ..-+++..-+.+.+.-.||-= +.+.+.. ....
T Consensus 13 ~~vI~Vlr~~~~-------e~a~~~a~Ali~gGi~~IEITl~sp-~a~e~I~~l~~~~p~~lIGAG-TVL~~~q~~~a~~ 83 (211)
T COG0800 13 QPVVPVIRGDDV-------EEALPLAKALIEGGIPAIEITLRTP-AALEAIRALAKEFPEALIGAG-TVLNPEQARQAIA 83 (211)
T ss_pred CCeeEEEEeCCH-------HHHHHHHHHHHHcCCCeEEEecCCC-CHHHHHHHHHHhCcccEEccc-cccCHHHHHHHHH
Confidence 356888765443 56678888888888876 343444 666666666666666666651 1111110 1111
Q ss_pred CcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHH
Q 027857 87 TVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITW 130 (217)
Q Consensus 87 ~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~ 130 (217)
.-.++++.++++..-....... .+..+|| .-|..|++.++.+
T Consensus 84 aGa~fiVsP~~~~ev~~~a~~~-~ip~~PG-~~TptEi~~Ale~ 125 (211)
T COG0800 84 AGAQFIVSPGLNPEVAKAANRY-GIPYIPG-VATPTEIMAALEL 125 (211)
T ss_pred cCCCEEECCCCCHHHHHHHHhC-CCcccCC-CCCHHHHHHHHHc
Confidence 1135666777754444433333 4666775 8899999988875
No 341
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=22.00 E-value=2e+02 Score=25.43 Aligned_cols=121 Identities=14% Similarity=0.169 Sum_probs=63.2
Q ss_pred CCeEE-EcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCC-ccC-----CCCcceEEecCCHHHHHHHHHHhcCeeEE-c
Q 027857 43 KINLV-YGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPL-EIS-----GETVGEVRTVSDMHERKAAMAQEAEAFIA-L 114 (217)
Q Consensus 43 g~~lv-~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~-e~~-----~~~~~~~i~~~~m~~Rk~~~~~~sda~Iv-l 114 (217)
|-.++ .|-|. |.|.++---+...-|+++.+ +....+ +.+ .-.+.+.+....=.-|+....+.-|+++. +
T Consensus 95 g~rVlEAGtGS-G~lt~~La~~vg~~G~v~ty--E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDm 171 (256)
T COG2519 95 GSRVLEAGTGS-GALTAYLARAVGPEGHVTTY--EIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDL 171 (256)
T ss_pred CCEEEEcccCc-hHHHHHHHHhhCCCceEEEE--EecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcC
Confidence 44454 56666 99999888788777899988 221110 000 00122212111122334444445666555 5
Q ss_pred cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEE
Q 027857 115 PGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIII 174 (217)
Q Consensus 115 pGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~ 174 (217)
|==+--++-+.+++ +.+-.++++.. +.+.+...++.|.+.||.+.+..+.+.
T Consensus 172 p~PW~~le~~~~~L------kpgg~~~~y~P--~veQv~kt~~~l~~~g~~~ie~~E~l~ 223 (256)
T COG2519 172 PDPWNVLEHVSDAL------KPGGVVVVYSP--TVEQVEKTVEALRERGFVDIEAVETLV 223 (256)
T ss_pred CChHHHHHHHHHHh------CCCcEEEEEcC--CHHHHHHHHHHHHhcCccchhhheeee
Confidence 65444444444443 23445555553 556666666667677777665555443
No 342
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=21.98 E-value=1.3e+02 Score=23.64 Aligned_cols=32 Identities=31% Similarity=0.262 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLV 47 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv 47 (217)
|.|+|.|.+..|.. ..++.|.+.|.++|+.+.
T Consensus 1 pvv~VvG~~~sGKT----Tl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKT----TLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHH----HHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHH----HHHHHHHHHHhHcCCceE
Confidence 46888887766522 355788888888888765
No 343
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.94 E-value=1.3e+02 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=16.5
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027857 13 RVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGG 50 (217)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GG 50 (217)
++-|.|+++. ..+++++.|+++|+.++.-+
T Consensus 10 ~~lItGas~g--------iG~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 10 VAVVTGGSSG--------IGLATVELLLEAGASVAICG 39 (265)
T ss_pred EEEEeCCCch--------HHHHHHHHHHHCCCeEEEEe
Confidence 5556665441 23456666666777665433
No 344
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.93 E-value=3.2e+02 Score=24.50 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=37.8
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 15 CVFCGSHSGNRRVFSDAALELGNELVRRKIN-LVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 15 ~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~-lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
++.|+||..... -.+.-+++.+.|-++++. |++=||. |-|..+.+=+.+.+-.++||
T Consensus 64 t~LgtsR~~~~~-~~~~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~~i~vigi 121 (301)
T TIGR02482 64 TILGTARCPEFK-TEEGRQKAVENLKKLGIEGLVVIGGD-GSYTGAQKLYEEGGIPVIGL 121 (301)
T ss_pred ceeccCCCCccC-CHHHHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHhhCCCEEee
Confidence 466777754211 112234566777777665 4566777 99999988776678899997
No 345
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.90 E-value=1.6e+02 Score=26.85 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
++|.++|.++....--+..+...|++.|.+.|+.+++=+.+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~ 41 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQ 41 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEeccc
Confidence 46889997766655556667788999999999998876655
No 346
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=21.87 E-value=4.4e+02 Score=23.01 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=19.9
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCC-eEEEEe
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGC-HVLGII 74 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG-~viGV~ 74 (217)
...+|+|+| ++=.++.+-|+..|. +++.+.
T Consensus 174 ~~vlI~g~g--~vG~~a~q~a~~~G~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAG--PIGLLTILALKAAGASKIIVSE 204 (351)
T ss_pred CEEEEECCC--HHHHHHHHHHHHcCCCEEEEEC
Confidence 456788764 444456677788887 677763
No 347
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=21.84 E-value=59 Score=18.90 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHH
Q 027857 31 AALELGNELVRRKINLVYGGGSVGLMGLISQTV 63 (217)
Q Consensus 31 ~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA 63 (217)
-...-+.+|-++ || |+|.|+..+|
T Consensus 5 w~k~~~~wlkkk--------gp-gi~kaal~aa 28 (29)
T PF07442_consen 5 WLKKAGEWLKKK--------GP-GILKAALKAA 28 (29)
T ss_pred HHHHHHHHHHhc--------Cc-hHHHHHHHhc
Confidence 345556666655 57 9999988765
No 348
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.82 E-value=3.9e+02 Score=20.85 Aligned_cols=40 Identities=8% Similarity=-0.006 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 33 LELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 33 ~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
.-+...|..+||.++|-|-. =-.+.+.+.|.+.+-.++++
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILV 60 (137)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34455566789999998876 45688888899999999999
No 349
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=21.78 E-value=1.3e+02 Score=28.02 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.9
Q ss_pred hcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 107 EAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 107 ~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
..|+|||+-| .-||+|.+..++++- .- .|||++.+.
T Consensus 121 ~~~G~VV~HG-TDTLe~tAffls~~~-~t-~KPIVitGa 156 (368)
T KOG0503|consen 121 SYDGIVVTHG-TDTLEETAFFLSFTI-NT-LKPIVITGA 156 (368)
T ss_pred ccCcEEEEcC-cchHHHHHHHHHHHH-hc-CCcEEEecc
Confidence 3788888865 889999998887633 22 399999864
No 350
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=21.65 E-value=4.1e+02 Score=24.00 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.1
Q ss_pred HHhcCeeEEccCCC
Q 027857 105 AQEAEAFIALPGGY 118 (217)
Q Consensus 105 ~~~sda~IvlpGG~ 118 (217)
...+|++|.++||.
T Consensus 81 ~~~~D~IIavGGGS 94 (357)
T cd08181 81 KFNADFVIGIGGGS 94 (357)
T ss_pred hcCCCEEEEeCCch
Confidence 34579999999976
No 351
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=21.60 E-value=1.2e+02 Score=27.82 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=26.1
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEe
Q 027857 108 AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLN 144 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln 144 (217)
.|+|||.= |.-||+|....+.++. . .+|||||.+
T Consensus 106 ~~GiVVtH-GTDTme~tA~~Lsl~l-~-~~kPVVlTG 139 (349)
T TIGR00520 106 YDGIVITH-GTDTLEETAYFLDLTV-K-SDKPVVIVG 139 (349)
T ss_pred CCEEEEeC-CcccHHHHHHHHHHHc-C-CCCCEEEEC
Confidence 46777765 5899999999887643 2 489999985
No 352
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=21.54 E-value=5.9e+02 Score=22.80 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=52.7
Q ss_pred HHHHhcCeeEEc--------cCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC---CCcchHHHHHHHhHHhcCCCCccc--
Q 027857 103 AMAQEAEAFIAL--------PGGYGTMEELLEMITWSQLGIHKKPVGLLNV---DGYYNSLLALFDNGVQEGFIKPSA-- 169 (217)
Q Consensus 103 ~~~~~sda~Ivl--------pGG~GTL~El~e~~t~~qlg~~~kPiilln~---~gf~~~l~~~l~~~~~~gfi~~~~-- 169 (217)
.+++.+..+|+| |+.+||.+++-++..- .+....+.+-|.. ..-=+.+.+|+++++...-..+..
T Consensus 113 ~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~--~~~~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~~~~~~ 190 (352)
T PF09848_consen 113 EIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAEN--LGIEVRHFFELKTQFRCHGSKEYIDWIDNLLDNKNISPKPFN 190 (352)
T ss_pred HHHhcCCEEEEEEccccEeecccCCCHHHHHHHHHh--cCCccccCcCcCcceecCCCHHHHHHHHHHHhccccCccccc
Confidence 445667777765 7888998887665532 2221122212221 111257888998888655544332
Q ss_pred --cc-cEEEcCCHHHHHHHHHhhc
Q 027857 170 --RQ-IIISAPSAKELLEKMEQYT 190 (217)
Q Consensus 170 --~~-~i~~~~d~ee~~~~l~~~~ 190 (217)
.+ -+.+.+|++++.+.|++-.
T Consensus 191 ~~~~yd~~~f~~~~~~~~~i~~k~ 214 (352)
T PF09848_consen 191 PDENYDFRVFDSPEEMKEAIKEKN 214 (352)
T ss_pred cCCceeEEEECCHHHHHHHHHHHh
Confidence 22 4789999999999998754
No 353
>PRK08589 short chain dehydrogenase; Validated
Probab=21.47 E-value=1.4e+02 Score=25.29 Aligned_cols=53 Identities=8% Similarity=-0.021 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
+++-|.|+++- ..+.+++.|+++|+.++.-+.+ .--+...+...+.++++..+
T Consensus 7 k~vlItGas~g--------IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 7 KVAVITGASTG--------IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEE
Confidence 46777776652 3467778888888888765544 21122222233345555554
No 354
>PRK15494 era GTPase Era; Provisional
Probab=21.45 E-value=6e+02 Score=22.83 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=39.9
Q ss_pred HHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCC-CcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEE----cCCH
Q 027857 105 AQEAEAFIALPGGYGTMEELLEMITWSQLGIHK-KPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIIS----APSA 179 (217)
Q Consensus 105 ~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~-kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~----~~d~ 179 (217)
...+|++|++--..-++++....+ +..+...+ .||+++|.....+.....+.+...+.+ ....++.+ -.+.
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~i-l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~---~~~~i~~iSAktg~gv 204 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNI-LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENH---PDSLLFPISALSGKNI 204 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHH-HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcC---CCcEEEEEeccCccCH
Confidence 457898877643333344432211 12222223 455556753332221122222222211 01223333 3578
Q ss_pred HHHHHHHHhhcCCC
Q 027857 180 KELLEKMEQYTPAH 193 (217)
Q Consensus 180 ee~~~~l~~~~~~~ 193 (217)
+++++.|.+..+..
T Consensus 205 ~eL~~~L~~~l~~~ 218 (339)
T PRK15494 205 DGLLEYITSKAKIS 218 (339)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999887664
No 355
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=21.42 E-value=1.7e+02 Score=24.95 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=22.5
Q ss_pred HHhcCeeEE--c-cCCCCcHHHH-HHHHHHHhcCCCCCcEEEEeC
Q 027857 105 AQEAEAFIA--L-PGGYGTMEEL-LEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 105 ~~~sda~Iv--l-pGG~GTL~El-~e~~t~~qlg~~~kPiilln~ 145 (217)
.+.+|.+|= | -|--|.+.|- ..+.. ++..+.+||+-++.
T Consensus 117 ~~~~dvIVDalfG~G~~g~lrep~a~~Ie--~iN~~~~pivAVDi 159 (203)
T COG0062 117 PESADVIVDALFGTGLSGPLREPFASLIE--AINASGKPIVAVDI 159 (203)
T ss_pred cccCCEEEEeceecCCCCCCccHHHHHHH--HHHhcCCceEEEeC
Confidence 345565542 2 3666666665 33332 33367899998885
No 356
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.41 E-value=2.4e+02 Score=26.14 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHHHHHHHHCCCeEEEcCCC---cCHHHHHHHHHHHcCCe-EEEEe
Q 027857 23 GNRRVFSDAALELGNELVRRKINLVYGGGS---VGLMGLISQTVYAGGCH-VLGII 74 (217)
Q Consensus 23 ~~~~~~~~~A~~lG~~La~~g~~lv~GGg~---~GlM~a~~~gA~~~GG~-viGV~ 74 (217)
+-++.+.+.-+.+-..++++|+.||+++|. .++.+++.+-|.+.|-. -|+++
T Consensus 51 gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V 106 (362)
T PF07287_consen 51 GYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVV 106 (362)
T ss_pred CchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 345667777778888889999999999876 35556666666666643 35554
No 357
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=21.40 E-value=4.6e+02 Score=21.44 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccC---CccCCCCcceE--Eec--CCHHHHHHH
Q 027857 31 AALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMP---LEISGETVGEV--RTV--SDMHERKAA 103 (217)
Q Consensus 31 ~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~---~e~~~~~~~~~--i~~--~~m~~Rk~~ 103 (217)
....+.+....+...+++.|=| ++-+....-+...+..-+=|+|..-.. .....-++.+. +.. .....+...
T Consensus 56 ~~~~i~~~~~g~~vv~l~~GDP-~~~~~~~~l~~~~~~~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~~~~~~~~~~~~ 134 (204)
T TIGR02467 56 LLEFIAATRKEKRVVVLASGDP-LFYGIGRTLAERLGKERLEIIPGISSVQYAFARLGLPWQDAVVISLHGRELDELLLA 134 (204)
T ss_pred HHHHHHHhcCCCCEEEEecCCC-cccccHHHHHHhCCCCcEEEeCChHHHHHHHHHcCCChhhCeEEEeeCCCCcHHHHH
Confidence 3334433332345667787777 888777666666554446667765210 00001111221 111 122222223
Q ss_pred HHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCC-cEEEEeC
Q 027857 104 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKK-PVGLLNV 145 (217)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~k-Piilln~ 145 (217)
.+...+.++++.++-.++.++.+.+. ..|..+. |+.+...
T Consensus 135 ~l~~~~~~vvl~~~~~~~~~i~~~L~--~~g~~~~~~v~v~~~ 175 (204)
T TIGR02467 135 LLRGHRKVAVLTDPRNGPAEIARELI--ELGIGGSYELTVGEN 175 (204)
T ss_pred HHhcCCcEEEEeCCCCCHHHHHHHHH--HCCCCCCeEEEEEcc
Confidence 34567778888887889999998774 4454344 8887643
No 358
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=21.28 E-value=6.1e+02 Score=22.90 Aligned_cols=75 Identities=19% Similarity=0.107 Sum_probs=39.8
Q ss_pred HHHHhcC-eeEEccCCCCcHHHHHHHHHHHhcC-CCCCcEEEEe---CCCcchHHHHHHHhHH---hcCCCCccccccEE
Q 027857 103 AMAQEAE-AFIALPGGYGTMEELLEMITWSQLG-IHKKPVGLLN---VDGYYNSLLALFDNGV---QEGFIKPSARQIII 174 (217)
Q Consensus 103 ~~~~~sd-a~IvlpGG~GTL~El~e~~t~~qlg-~~~kPiilln---~~gf~~~l~~~l~~~~---~~gfi~~~~~~~i~ 174 (217)
.+++.+. ++|+|-||.||= ++ ..+||++=+. ..-+++.+.+.+..+. .+.+-.......++
T Consensus 9 ~~i~~~~va~viLaGG~GTR-----------Lg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~i 77 (323)
T cd04193 9 KAIAEGKVAVLLLAGGQGTR-----------LGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYI 77 (323)
T ss_pred HHHhcCCEEEEEECCCcccc-----------cCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEE
Confidence 3444445 788899999993 23 2377777554 2346676666665432 11111111223343
Q ss_pred EcC--CHHHHHHHHHh
Q 027857 175 SAP--SAKELLEKMEQ 188 (217)
Q Consensus 175 ~~~--d~ee~~~~l~~ 188 (217)
++. +-++..+++++
T Consensus 78 mtS~~t~~~t~~~~~~ 93 (323)
T cd04193 78 MTSEATHEETRKFFKE 93 (323)
T ss_pred EcChhHhHHHHHHHHh
Confidence 333 45666666654
No 359
>PRK06703 flavodoxin; Provisional
Probab=21.22 E-value=3.9e+02 Score=20.57 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=18.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL 46 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l 46 (217)
|++|.|+.+|..++. .+.|+.+++.|.+.|+.+
T Consensus 1 mmkv~IiY~S~tGnT---~~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 1 MAKILIAYASMSGNT---EDIADLIKVSLDAFDHEV 33 (151)
T ss_pred CCeEEEEEECCCchH---HHHHHHHHHHHHhcCCce
Confidence 345666666666533 245566666666565543
No 360
>PRK09072 short chain dehydrogenase; Provisional
Probab=21.15 E-value=1.5e+02 Score=24.81 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=16.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
++|.|.|+++. ..+++.+.|+++|+.++-
T Consensus 6 ~~vlItG~s~~--------iG~~ia~~l~~~G~~V~~ 34 (263)
T PRK09072 6 KRVLLTGASGG--------IGQALAEALAAAGARLLL 34 (263)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEE
Confidence 35666665541 334566666666766543
No 361
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.13 E-value=4.4e+02 Score=24.33 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=11.0
Q ss_pred HhcCeeEEccCCC
Q 027857 106 QEAEAFIALPGGY 118 (217)
Q Consensus 106 ~~sda~IvlpGG~ 118 (217)
..+|++|.++||.
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 4689999999986
No 362
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=21.01 E-value=79 Score=28.58 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=37.4
Q ss_pred CCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccE-----EEcCCHHHHHHHHHhhc
Q 027857 116 GGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQII-----ISAPSAKELLEKMEQYT 190 (217)
Q Consensus 116 GG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i-----~~~~d~ee~~~~l~~~~ 190 (217)
.+.||+||+++.... -++.++ .||++++.|.+ +.+ ....+ -+-.||...+++|.+|.
T Consensus 152 ~~~~~~e~~fe~F~~--------G~~~~G--p~~dHVl~~W~-~~~-------~~~VLFl~YEdmk~dp~~~ikrlaeFL 213 (297)
T KOG1584|consen 152 PGPGTFEEFFESFCN--------GVVPYG--PWWDHVLGYWE-LED-------PKNVLFLKYEDMKADPKGEIKKLAEFL 213 (297)
T ss_pred CCCCcHHHHHHHHhC--------CcCCcC--ChHHHHHHHHH-hcC-------CCceEEEEHHHhhhCHHHHHHHHHHHh
Confidence 567889999998863 233443 59999999887 211 11111 12457888888888775
Q ss_pred C
Q 027857 191 P 191 (217)
Q Consensus 191 ~ 191 (217)
.
T Consensus 214 g 214 (297)
T KOG1584|consen 214 G 214 (297)
T ss_pred C
Confidence 3
No 363
>PRK07041 short chain dehydrogenase; Provisional
Probab=21.01 E-value=1.1e+02 Score=24.75 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=14.9
Q ss_pred EEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 46 LVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 46 lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
||||+.. |+-.++++...+.|-+++.+
T Consensus 1 lItGas~-~iG~~~a~~l~~~G~~v~~~ 27 (230)
T PRK07041 1 LVVGGSS-GIGLALARAFAAEGARVTIA 27 (230)
T ss_pred CeecCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 3555555 55555555555555555444
No 364
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=20.96 E-value=5e+02 Score=21.72 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
+-+++.|.|+++ -..+.+.+.|+++|+.++.-+...---+...+...+.++++..+
T Consensus 9 ~~k~vlVtGas~--------giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 64 (278)
T PRK08277 9 KGKVAVITGGGG--------VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAV 64 (278)
T ss_pred CCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
No 365
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=20.85 E-value=4.1e+02 Score=24.17 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=10.3
Q ss_pred hcCeeEEccCCC
Q 027857 107 EAEAFIALPGGY 118 (217)
Q Consensus 107 ~sda~IvlpGG~ 118 (217)
.+|++|.++||.
T Consensus 81 ~~D~IIaiGGGS 92 (347)
T cd08184 81 LPCAIVGIGGGS 92 (347)
T ss_pred CCCEEEEeCCcH
Confidence 579999999975
No 366
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.83 E-value=1.4e+02 Score=24.41 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=31.0
Q ss_pred CCCCCCCCCCcceEEEEcCCCCCC-------ChHHHHHHHHHHHHHHHCCCeEEE
Q 027857 1 MEEEGYTGSNFKRVCVFCGSHSGN-------RRVFSDAALELGNELVRRKINLVY 48 (217)
Q Consensus 1 ~~~~~~~~~~~~~I~Vfggs~~~~-------~~~~~~~A~~lG~~La~~g~~lv~ 48 (217)
|.+.|..++++ .+-||||++.-. ...-.+.+...=+.|.++|+.|+.
T Consensus 77 m~~~Ga~~~~l-~aKifGGA~m~~~~~~~~~~~IG~rNv~~a~~~L~~~gI~i~a 130 (162)
T PRK13490 77 MEKLGANKRNL-KAKIAGGASMFNFSDKSMVMDIGNRNGKAVKKKLKELSIPILA 130 (162)
T ss_pred HHHcCCCHHHE-EEEEEeCccccCCCCccccCChhHHHHHHHHHHHHHcCCcEEE
Confidence 34567665554 788999988542 123344555555678899999974
No 367
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=20.83 E-value=4.9e+02 Score=21.72 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCeeEEccC--CCCcHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 99 ERKAAMAQEAEAFIALPG--GYGTMEELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpG--G~GTL~El~e~~t~~qlg~~~kPiilln~~ 146 (217)
+....+...||++|.... +.|+ =+.|++.. ++|++..+..
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~~------g~PvI~~~~~ 311 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGL--VLLEAMAA------GLPVVAVDAP 311 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcCh--HHHHHHHc------CCcEEEeCCC
Confidence 344556778998775432 2332 25666654 8999988764
No 368
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=20.75 E-value=2.6e+02 Score=26.38 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCCeEEEEecCcccCCccC-CCCcceEEecCCHHHHHHHHHHhcCeeEEccCCCCcH
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGCHVLGIIPKALMPLEIS-GETVGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTM 121 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG~viGV~P~~~~~~e~~-~~~~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL 121 (217)
...+|.|.|+.|+. +++-++..|.+|+.+-++..- .+.. ..++ +.+ .+. . .+..+|.+|-..|...++
T Consensus 203 ktVvViG~G~IG~~--va~~ak~~Ga~ViV~d~d~~R-~~~A~~~G~-~~~---~~~---e-~v~~aDVVI~atG~~~~i 271 (413)
T cd00401 203 KVAVVAGYGDVGKG--CAQSLRGQGARVIVTEVDPIC-ALQAAMEGY-EVM---TME---E-AVKEGDIFVTTTGNKDII 271 (413)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEECChhh-HHHHHhcCC-EEc---cHH---H-HHcCCCEEEECCCCHHHH
Confidence 34568999998874 445566778888776322110 0111 1111 111 222 2 235688888888877766
Q ss_pred HH
Q 027857 122 EE 123 (217)
Q Consensus 122 ~E 123 (217)
++
T Consensus 272 ~~ 273 (413)
T cd00401 272 TG 273 (413)
T ss_pred HH
Confidence 64
No 369
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=20.74 E-value=90 Score=28.30 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=20.0
Q ss_pred eEEEcCCCcCHHHHHHHHHHHcCCeEEEEe
Q 027857 45 NLVYGGGSVGLMGLISQTVYAGGCHVLGII 74 (217)
Q Consensus 45 ~lv~GGg~~GlM~a~~~gA~~~GG~viGV~ 74 (217)
.||-|+|.+|++-|+ .|.++|-+|+-|-
T Consensus 2 VvVIG~G~AGl~AA~--~Aae~G~~V~lve 29 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAI--EAAEAGAKVLLVE 29 (417)
T ss_dssp EEEE-SSHHHHHHHH--HHHHTTT-EEEEE
T ss_pred EEEECCCHHHHHHHH--HHhhhcCeEEEEE
Confidence 478899998887666 4677888888883
No 370
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=20.72 E-value=63 Score=25.11 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=20.1
Q ss_pred eeEEccCCCCcHHHHH-H---HHHHHhcC-CCCCcEEEEeC
Q 027857 110 AFIALPGGYGTMEELL-E---MITWSQLG-IHKKPVGLLNV 145 (217)
Q Consensus 110 a~IvlpGG~GTL~El~-e---~~t~~qlg-~~~kPiilln~ 145 (217)
-.|++|||.|..+-+. . +..+.+-- .++|||.....
T Consensus 39 DalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~ 79 (147)
T PF01965_consen 39 DALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICH 79 (147)
T ss_dssp SEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETT
T ss_pred CEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCC
Confidence 3678999999766665 2 22222211 35788887754
No 371
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=20.63 E-value=6.7e+02 Score=23.03 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=69.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-EEcCCCcCHHHHHHHHHHHcCCeEEEEec-CcccCCccCCCC
Q 027857 10 NFKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL-VYGGGSVGLMGLISQTVYAGGCHVLGIIP-KALMPLEISGET 87 (217)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l-v~GGg~~GlM~a~~~gA~~~GG~viGV~P-~~~~~~e~~~~~ 87 (217)
+.-++=|.+-.+....+. ...-+-++.|.+.|+.+ +|-.-. + ..++...+.|. +.|.| ....- ...+
T Consensus 166 ~~iKlEvi~e~~~llpd~--~~~v~aa~~L~~~Gf~v~~yc~~d--~--~~a~~l~~~g~--~avmPl~~pIG---sg~g 234 (326)
T PRK11840 166 DLVKLEVLGDAKTLYPDM--VETLKATEILVKEGFQVMVYCSDD--P--IAAKRLEDAGA--VAVMPLGAPIG---SGLG 234 (326)
T ss_pred CeEEEEEcCCCCCcccCH--HHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHhcCC--EEEeecccccc---CCCC
Confidence 344566777655542222 24456677888999999 665544 3 34444555555 66666 32211 1111
Q ss_pred cceEEecCCHHHHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 88 VGEVRTVSDMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 88 ~~~~i~~~~m~~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
+. =++.-+.+++..+.-|++.+|+||-+.+..++.+ +---+++|+
T Consensus 235 v~-------~p~~i~~~~e~~~vpVivdAGIg~~sda~~Amel------GadgVL~nS 279 (326)
T PRK11840 235 IQ-------NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMEL------GCDGVLMNT 279 (326)
T ss_pred CC-------CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHc------CCCEEEEcc
Confidence 11 1344555667789999999999999999999976 555667765
No 372
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=20.62 E-value=1.3e+02 Score=25.83 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=17.9
Q ss_pred EEcCCCCCCChHHHHHHHHHHHHHHH
Q 027857 16 VFCGSHSGNRRVFSDAALELGNELVR 41 (217)
Q Consensus 16 Vfggs~~~~~~~~~~~A~~lG~~La~ 41 (217)
=||||...+.+.+.+.++.+.+....
T Consensus 5 K~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 5 KFGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred EECchhcCCHHHHHHHHHHHHHHHHC
Confidence 38999987556666677777766543
No 373
>PRK05693 short chain dehydrogenase; Provisional
Probab=20.62 E-value=1.5e+02 Score=25.05 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=18.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027857 11 FKRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGG 50 (217)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GG 50 (217)
|++|-|.|+++. ..+.+.+.|+++|+.|+.-+
T Consensus 1 mk~vlItGasgg--------iG~~la~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGCSSG--------IGRALADAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEecCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 346667665541 33456666677787765433
No 374
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=20.59 E-value=5e+02 Score=21.54 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=24.1
Q ss_pred cCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCCCcch
Q 027857 108 AEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVDGYYN 150 (217)
Q Consensus 108 sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~gf~~ 150 (217)
.|++|++-=..-+++++-.+.... ..+|+|++|. -|+
T Consensus 98 ~~~~vvv~p~~~~l~~~e~~~~~~----~~rpvvl~Np--~l~ 134 (209)
T PF09353_consen 98 DDILVVVAPSPQELDDVEKLCEAA----GGRPVVLLNP--QLE 134 (209)
T ss_pred CCEEEEEECChhhHHHHHHHHHhc----CCCeEEEEec--ccc
Confidence 577766655555577777666541 2489999995 355
No 375
>PRK13337 putative lipid kinase; Reviewed
Probab=20.58 E-value=2.3e+02 Score=24.81 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=21.7
Q ss_pred eEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEE
Q 027857 111 FIALPGGYGTMEELLEMITWSQLGIHKKPVGLL 143 (217)
Q Consensus 111 ~IvlpGG~GTL~El~e~~t~~qlg~~~kPiill 143 (217)
.|+.-||=||+.|+...+.- . .+..|+.++
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~--~-~~~~~lgii 89 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAE--K-ENRPKLGII 89 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhh--C-CCCCcEEEE
Confidence 67788999999999977632 1 124578777
No 376
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.52 E-value=1.7e+02 Score=25.43 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINL 46 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~l 46 (217)
++|.|+||+...-.+-+ -++|.|+++|+.+
T Consensus 61 ~~V~VlcG~GNNGGDGl-----v~AR~L~~~G~~V 90 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGL-----VAARHLAHFGYEV 90 (246)
T ss_pred CeEEEEECCCCCchhHH-----HHHHHHHHCCCeE
Confidence 46889888765333444 4667777777765
No 377
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.50 E-value=1.6e+02 Score=24.73 Aligned_cols=33 Identities=3% Similarity=0.060 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGGGS 52 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GGg~ 52 (217)
++|.|.|+++. ..+.+++.|+++|+.++.-+..
T Consensus 11 ~~vlItGasgg--------IG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 11 QVAVVTGAGRG--------LGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred CEEEEECCCCh--------HHHHHHHHHHHCCCEEEEEeCC
Confidence 46777776552 3456777777888887654443
No 378
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=20.47 E-value=1.9e+02 Score=23.35 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRK 43 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g 43 (217)
++|++|+.+....++.|++...+-.+.+...+
T Consensus 68 KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~ 99 (160)
T PF12641_consen 68 KKVALFGTAGAGPDSEYAKKILKNVEALLPKG 99 (160)
T ss_pred CeEEEEEecCCCCchHHHHHHHHHHHHhhccC
Confidence 57888887776667777666655555555554
No 379
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.47 E-value=1.4e+02 Score=26.45 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=8.4
Q ss_pred HHHHHHHHHCCCeEEE
Q 027857 33 LELGNELVRRKINLVY 48 (217)
Q Consensus 33 ~~lG~~La~~g~~lv~ 48 (217)
+.+++.||++|..++.
T Consensus 24 ~a~A~~la~~Ga~Vvv 39 (299)
T PRK06300 24 WGIAKALAEAGATILV 39 (299)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 4445555555555554
No 380
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=20.38 E-value=1.8e+02 Score=22.30 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=21.5
Q ss_pred hcCeeEEccC--CCCcHH-HHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 107 EAEAFIALPG--GYGTME-ELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 107 ~sda~IvlpG--G~GTL~-El~e~~t~~qlg~~~kPiilln~~ 146 (217)
.+|.+|+-.. |.|.+. ++...+.. +...+|.+.++...
T Consensus 50 ~~d~iilgs~t~~~g~~p~~~~~fl~~--l~~~~k~~avfgtg 90 (140)
T TIGR01754 50 NYDLVFLGTWTWERGRTPDEMKDFIAE--LGYKPSNVAIFGTG 90 (140)
T ss_pred hCCEEEEEcCeeCCCcCCHHHHHHHHH--hcccCCEEEEEEcC
Confidence 3666555443 566654 45554433 33357888888753
No 381
>PRK06443 chorismate mutase; Validated
Probab=20.36 E-value=2e+02 Score=24.02 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcCHHHHHHHHHHHcCCeEEE
Q 027857 27 VFSDAALELGNELVRRKINLVYGGGSVGLMGLISQTVYAGGCHVLG 72 (217)
Q Consensus 27 ~~~~~A~~lG~~La~~g~~lv~GGg~~GlM~a~~~gA~~~GG~viG 72 (217)
.|-..|+.||..+...||.++-= -.....-.|+..+||+++=
T Consensus 91 ~y~~~~~sl~~~~~~~g~~v~i~----~~~~~~~~~~~~~~~~~~~ 132 (177)
T PRK06443 91 DYDSLILSLGLILSRPGIEIYIE----DNPDSIEEGCSKAGGHVVI 132 (177)
T ss_pred chHHHHHHHHHHHhcCCcEEEec----cCchHHHHhhhhcCCeEec
Confidence 46688999999999999998742 3567888888999998753
No 382
>PRK14072 6-phosphofructokinase; Provisional
Probab=20.24 E-value=3.9e+02 Score=25.13 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=36.5
Q ss_pred EEEcCCCCCC-----ChHHHHHHHHHHHHHHHCCCe-EEEcCCCcCHHHHHHHHHH---HcC--CeEEEE
Q 027857 15 CVFCGSHSGN-----RRVFSDAALELGNELVRRKIN-LVYGGGSVGLMGLISQTVY---AGG--CHVLGI 73 (217)
Q Consensus 15 ~Vfggs~~~~-----~~~~~~~A~~lG~~La~~g~~-lv~GGg~~GlM~a~~~gA~---~~G--G~viGV 73 (217)
++.|+||... ++..+ .++.+.|-+.++. ||+=||. |-|..+.+=+. +.| -.+|||
T Consensus 73 t~LgssR~~~~~~~~~~~~~---~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 73 GALGSCRYKLKSLEEDRAEY---ERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred eEeccCCCCCcccccChHHH---HHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEe
Confidence 5778888653 22233 5566677777765 4666778 99988876443 255 588998
No 383
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=20.24 E-value=2.7e+02 Score=21.02 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHhcC--CCCCcEEEEeCCCcchHHHHHHHhHHhcCCCCccccccEEEcCC--HHHHHHHHH
Q 027857 120 TMEELLEMITWSQLG--IHKKPVGLLNVDGYYNSLLALFDNGVQEGFIKPSARQIIISAPS--AKELLEKME 187 (217)
Q Consensus 120 TL~El~e~~t~~qlg--~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d--~ee~~~~l~ 187 (217)
+++-+..++...|-. ..-+.+.++|...+++.++..+.. |++++..+-+.+.++ .+++.+.+.
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~~L~~~i~ 145 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKP-----FLDEKTREKIRFVGNDSKEELLEYID 145 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHh-----hcChhhhccEEEeCCCCHHHHHhhCC
Confidence 345455555544443 234788999987666666665554 555666666777776 777776663
No 384
>PRK08303 short chain dehydrogenase; Provisional
Probab=20.23 E-value=1.4e+02 Score=26.13 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027857 12 KRVCVFCGSHSGNRRVFSDAALELGNELVRRKINLVYGG 50 (217)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~La~~g~~lv~GG 50 (217)
+++.|.|+++ + ..+.+++.|+++|+.|+.-+
T Consensus 9 k~~lITGgs~-G-------IG~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 9 KVALVAGATR-G-------AGRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CEEEEeCCCc-h-------HHHHHHHHHHHCCCEEEEEe
Confidence 3566666554 2 23556666777777765544
No 385
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=20.23 E-value=1.8e+02 Score=24.78 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCeEEEcCCCcCHHHHHHHHHHHcCCe-EEEEecCcccCCccCC-CCcceEEecCCHHHHHHHHH--HhcCeeEEccCCC
Q 027857 43 KINLVYGGGSVGLMGLISQTVYAGGCH-VLGIIPKALMPLEISG-ETVGEVRTVSDMHERKAAMA--QEAEAFIALPGGY 118 (217)
Q Consensus 43 g~~lv~GGg~~GlM~a~~~gA~~~GG~-viGV~P~~~~~~e~~~-~~~~~~i~~~~m~~Rk~~~~--~~sda~IvlpGG~ 118 (217)
...+|+|+|+.|++ ++.-|+..|.. ++.+-... ...+... -..+..+......+....+. ...|.+|=..|+.
T Consensus 122 ~~VlV~G~G~vG~~--~~~~ak~~G~~~Vi~~~~~~-~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLT--AAAAAAAAGAARVVAADPSP-DRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCCEEEEECCCH-HHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 46789988777766 34456677776 66662211 0111110 11122222222211111111 1258888777877
Q ss_pred CcHHHHHHHH
Q 027857 119 GTMEELLEMI 128 (217)
Q Consensus 119 GTL~El~e~~ 128 (217)
.++++....+
T Consensus 199 ~~~~~~~~~l 208 (280)
T TIGR03366 199 AAVRACLESL 208 (280)
T ss_pred HHHHHHHHHh
Confidence 7777776555
No 386
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=20.15 E-value=1.1e+02 Score=27.18 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=35.4
Q ss_pred eEEccCCCCc-HHHHHHHHHHHhcCCCCCcEEEEeCCCcchHHHHHH-HhHHhcCCCCcccccc-EEEcCCHHHHHHHHH
Q 027857 111 FIALPGGYGT-MEELLEMITWSQLGIHKKPVGLLNVDGYYNSLLALF-DNGVQEGFIKPSARQI-IISAPSAKELLEKME 187 (217)
Q Consensus 111 ~IvlpGG~GT-L~El~e~~t~~qlg~~~kPiilln~~gf~~~l~~~l-~~~~~~gfi~~~~~~~-i~~~~d~ee~~~~l~ 187 (217)
.||+-||.|| |-.+.. ..+||++=+.. .|+++++ +.+...|. .++ +.+....+.+.+++.
T Consensus 6 avILAaG~GTRL~PlT~--------~~PKpLvpV~g----kPiI~~vl~~l~~~Gi-----~~ivivv~~~~~~i~~~~~ 68 (297)
T TIGR01105 6 AVIPVAGLGMHMLPATK--------AIPKEMLPIVD----KPMIQYIVDEIVAAGI-----KEIVLVTHASKNAVENHFD 68 (297)
T ss_pred EEEECCCCCcccCcccC--------CCCceeeEECC----EEHHHHHHHHHHHCCC-----CEEEEEecCChHHHHHHHh
Confidence 6889999999 443321 23788776643 3566654 67766553 233 444455566666553
No 387
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=20.11 E-value=1.2e+02 Score=25.81 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 027857 99 ERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVD 146 (217)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~~ 146 (217)
++.....+.+|.+|+ +||--.+.-++.+.+...++.|++++|.+
T Consensus 163 ~~~~~~~~~~Dlllv----iGTSl~v~p~~~l~~~~~~~~~~i~iN~~ 206 (225)
T cd01411 163 EEAIQAIEKADLLVI----VGTSFVVYPFAGLIDYRQAGANLIAINKE 206 (225)
T ss_pred HHHHHHHhcCCEEEE----ECcCCeehhHHHHHHHHhCCCeEEEECCC
Confidence 455566677997777 33544444444444333357899999975
No 388
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=20.07 E-value=1.3e+02 Score=24.72 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=13.1
Q ss_pred EEcCCCcCHHHHHHHHHHHcCCeEEEE
Q 027857 47 VYGGGSVGLMGLISQTVYAGGCHVLGI 73 (217)
Q Consensus 47 v~GGg~~GlM~a~~~gA~~~GG~viGV 73 (217)
|.|-|.+|+--|++- .++|=+|+|+
T Consensus 5 ViGlGyvGl~~A~~l--A~~G~~V~g~ 29 (185)
T PF03721_consen 5 VIGLGYVGLPLAAAL--AEKGHQVIGV 29 (185)
T ss_dssp EE--STTHHHHHHHH--HHTTSEEEEE
T ss_pred EECCCcchHHHHHHH--HhCCCEEEEE
Confidence 456666666555543 2335577777
No 389
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=20.04 E-value=2.2e+02 Score=23.59 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=21.8
Q ss_pred HHHHhcCeeEEccCCCCcHHHHHHHHHHHhcCCCCCcEEEEeC
Q 027857 103 AMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNV 145 (217)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~e~~t~~qlg~~~kPiilln~ 145 (217)
++....|++|+.|......++....+. ..+.|+++++.
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (273)
T cd06309 51 FIAQGVDVIILAPVVETGWDPVLKEAK-----AAGIPVILVDR 88 (273)
T ss_pred HHHcCCCEEEEcCCccccchHHHHHHH-----HCCCCEEEEec
Confidence 344568899888755433334332221 23678888774
Done!