BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027858
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 90 YSWQPASCAVPR--------FDGGDF---LRRYRGKRIMFVGDSLSLNMWESLSCMIHAS 138
Y+W A+ A P+ F DF L ++ ++ GDS + +E + H +
Sbjct: 188 YNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEA 247
Query: 139 VPNAKTSFVR--KETLSSVSFEEYGVTLLLY 167
+PN+K + ++ L++ +E+ LLL+
Sbjct: 248 IPNSKVALIKGGPHGLNATHAKEFNEALLLF 278
>pdb|2QK7|B Chain B, A Covalent S-f Heterodimer Of Staphylococcal
Gamma-hemolysin
Length = 307
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD VL
Sbjct: 12 ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 61
>pdb|3B07|A Chain A, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|C Chain C, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|E Chain E, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|G Chain G, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
Length = 309
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD VL
Sbjct: 14 ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 63
>pdb|1LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|2LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|3LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus With
Phosphocholine Bound
Length = 299
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD VL
Sbjct: 4 ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 53
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 79 KYGRPDKQYLKYSWQPASCAVPRFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHAS 138
KY RP K+ + W+ C G GK F D + L A
Sbjct: 1 KYPRPHKKLKQLHWEKLDCTDNSIWGT-------GKAEKFADDLYEKGVLADLEKAFAAR 53
Query: 139 VPNAKTSFVRKETLSSVSF------EEYGVTLLLYRTPYLVDIVKQ 178
+ S RKE L ++F +++G+ L +Y + + D+VK+
Sbjct: 54 EIKSLAS-KRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 98
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 32 LYNVTSLRGRKQVSGCNLFQGRWVI-DPSYPLYDSSSCPFIDAEFDCL 78
L + + +K++S NL W++ D +YP+ S PFI + DC+
Sbjct: 241 LQQMLQVDPKKRISMKNLLNHPWIMQDYNYPVEWQSKNPFIHLDDDCV 288
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 79 KYGRPDKQYLKYSWQPASCAVPRFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHAS 138
KY RP K+ + W+ C G GK F D + L A
Sbjct: 24 KYPRPHKKLKQLHWEKLDCTDNSIWGT-------GKAEKFADDLYEKGVLADLEKAFAAR 76
Query: 139 VPNAKTSFVRKETLSSVSF------EEYGVTLLLYRTPYLVDIVKQ 178
+ S RKE L ++F +++G+ L +Y + + D+VK+
Sbjct: 77 EIKSLAS-KRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 121
>pdb|1PVL|A Chain A, Structure Of The Panton-Valentine Leucocidin F Component
From Staphylococcus Aureus
Length = 301
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD +L
Sbjct: 4 ITPVSEKKVDDKITLYKTTATSDSDKLKISQILTFNFIKDKSYDKDTLIL 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,363,877
Number of Sequences: 62578
Number of extensions: 253471
Number of successful extensions: 481
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 8
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)