Query 027858
Match_columns 217
No_of_seqs 143 out of 681
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02629 powdery mildew resist 100.0 7.8E-72 1.7E-76 516.4 17.8 175 42-216 48-224 (387)
2 PF14416 PMR5N: PMR5 N termina 100.0 1.1E-29 2.4E-34 177.0 4.7 54 45-98 2-55 (55)
3 PF13839 PC-Esterase: GDSL/SGN 99.9 9.3E-25 2E-29 186.4 9.0 104 99-212 1-115 (263)
4 cd01842 SGNH_hydrolase_like_5 96.5 0.0027 5.9E-08 54.3 3.4 21 116-136 2-22 (183)
5 cd01834 SGNH_hydrolase_like_2 80.5 0.86 1.9E-05 36.4 1.3 15 113-127 1-15 (191)
6 cd01829 SGNH_hydrolase_peri2 S 78.9 1.8 4E-05 35.2 2.8 21 115-135 1-21 (200)
7 COG2845 Uncharacterized protei 78.7 2.7 5.9E-05 39.4 4.1 30 108-137 111-140 (354)
8 cd01841 NnaC_like NnaC (CMP-Ne 75.5 1.4 3.1E-05 35.1 1.2 13 114-126 1-13 (174)
9 PF00185 OTCace: Aspartate/orn 66.1 4.1 8.8E-05 33.5 1.9 24 112-136 1-24 (158)
10 cd01825 SGNH_hydrolase_peri1 S 64.5 2.9 6.3E-05 33.5 0.7 17 115-131 1-18 (189)
11 cd01844 SGNH_hydrolase_like_6 60.3 4.4 9.5E-05 32.8 1.1 13 115-127 1-13 (177)
12 cd01835 SGNH_hydrolase_like_3 59.7 4.1 9E-05 33.1 0.8 13 114-126 2-14 (193)
13 cd01838 Isoamyl_acetate_hydrol 59.6 4.2 9.1E-05 32.5 0.9 13 115-127 1-13 (199)
14 cd01820 PAF_acetylesterase_lik 59.3 8 0.00017 32.4 2.5 16 112-127 31-46 (214)
15 cd01832 SGNH_hydrolase_like_1 59.0 4.3 9.4E-05 32.5 0.8 11 115-125 1-11 (185)
16 PF12026 DUF3513: Domain of un 54.0 0.98 2.1E-05 39.6 -3.9 18 110-127 131-148 (210)
17 cd01827 sialate_O-acetylestera 53.6 6 0.00013 31.8 0.8 13 115-127 2-14 (188)
18 cd01833 XynB_like SGNH_hydrola 53.1 5.2 0.00011 31.3 0.4 12 115-126 2-13 (157)
19 cd01831 Endoglucanase_E_like E 52.7 6.5 0.00014 31.5 0.9 13 115-127 1-13 (169)
20 cd01822 Lysophospholipase_L1_l 52.6 6.4 0.00014 31.1 0.8 12 115-126 2-13 (177)
21 PRK10528 multifunctional acyl- 49.6 8.7 0.00019 31.8 1.2 15 113-127 10-24 (191)
22 PRK14805 ornithine carbamoyltr 48.8 11 0.00024 34.5 1.8 25 110-136 144-168 (302)
23 PF03808 Glyco_tran_WecB: Glyc 48.3 31 0.00066 28.5 4.3 43 96-140 24-73 (172)
24 cd00229 SGNH_hydrolase SGNH_hy 45.2 7.3 0.00016 29.3 0.1 12 116-127 1-12 (187)
25 cd04501 SGNH_hydrolase_like_4 44.2 10 0.00023 30.3 0.8 12 114-125 1-12 (183)
26 cd01839 SGNH_arylesterase_like 43.7 11 0.00023 31.1 0.9 12 115-126 1-12 (208)
27 cd01836 FeeA_FeeB_like SGNH_hy 43.1 11 0.00023 30.5 0.8 14 114-127 3-16 (191)
28 PF09949 DUF2183: Uncharacteri 41.8 20 0.00044 27.6 2.1 25 102-126 53-77 (100)
29 PRK04284 ornithine carbamoyltr 41.3 17 0.00037 33.7 1.9 25 111-136 153-177 (332)
30 PF00702 Hydrolase: haloacid d 41.0 20 0.00043 29.0 2.0 20 105-124 185-206 (215)
31 cd01830 XynE_like SGNH_hydrola 40.6 13 0.00028 30.8 0.9 12 115-126 1-12 (204)
32 cd01828 sialate_O-acetylestera 40.0 14 0.0003 29.3 0.9 12 116-127 2-13 (169)
33 PLN02527 aspartate carbamoyltr 34.9 27 0.00058 32.0 2.1 26 111-136 149-174 (306)
34 cd01821 Rhamnogalacturan_acety 34.6 17 0.00038 29.6 0.8 14 115-128 2-15 (198)
35 PLN02342 ornithine carbamoyltr 34.6 29 0.00063 32.5 2.3 25 110-136 191-215 (348)
36 PRK00856 pyrB aspartate carbam 34.5 25 0.00054 32.2 1.8 28 110-137 153-180 (305)
37 PRK02102 ornithine carbamoyltr 34.2 28 0.00061 32.3 2.1 25 111-136 153-177 (331)
38 PRK03515 ornithine carbamoyltr 33.5 26 0.00056 32.6 1.8 25 111-136 154-178 (336)
39 cd04502 SGNH_hydrolase_like_7 33.4 20 0.00043 28.5 0.9 12 116-127 2-13 (171)
40 PF13472 Lipase_GDSL_2: GDSL-l 33.3 21 0.00046 27.2 1.0 11 117-127 1-11 (179)
41 COG0078 ArgF Ornithine carbamo 33.0 30 0.00065 32.2 2.1 21 111-133 151-171 (310)
42 cd04506 SGNH_hydrolase_YpmR_li 32.9 20 0.00043 29.3 0.8 12 115-126 1-12 (204)
43 COG0034 PurF Glutamine phospho 32.9 22 0.00047 34.8 1.2 33 106-138 341-374 (470)
44 TIGR01489 DKMTPPase-SF 2,3-dik 32.9 43 0.00094 26.5 2.8 13 113-125 162-174 (188)
45 cd01840 SGNH_hydrolase_yrhL_li 32.0 23 0.00049 28.0 1.0 18 116-133 2-19 (150)
46 PRK01713 ornithine carbamoyltr 31.5 33 0.00071 31.8 2.1 25 111-136 154-178 (334)
47 PF01861 DUF43: Protein of unk 30.3 23 0.0005 31.8 0.9 12 111-122 43-54 (243)
48 PRK08192 aspartate carbamoyltr 28.9 36 0.00078 31.7 1.9 26 111-136 157-182 (338)
49 TIGR00670 asp_carb_tr aspartat 28.2 38 0.00083 30.9 1.9 27 110-136 147-173 (301)
50 KOG3482 Small nuclear ribonucl 27.2 54 0.0012 24.5 2.2 21 97-117 2-22 (79)
51 PRK12562 ornithine carbamoyltr 27.2 43 0.00094 31.1 2.1 25 111-136 154-178 (334)
52 PRK11891 aspartate carbamoyltr 26.7 46 0.00099 32.2 2.2 26 111-136 239-264 (429)
53 PRK10113 cell division modulat 25.5 33 0.00071 25.4 0.8 18 109-126 37-56 (80)
54 PF14647 FAM91_N: FAM91 N-term 25.5 67 0.0015 29.9 3.0 30 99-138 109-138 (308)
55 PRK14804 ornithine carbamoyltr 25.3 48 0.001 30.4 2.0 25 110-136 150-174 (311)
56 PRK00779 ornithine carbamoyltr 24.0 44 0.00096 30.5 1.5 26 109-136 148-173 (304)
57 CHL00073 chlN photochlorophyll 23.8 57 0.0012 31.8 2.3 28 106-136 307-334 (457)
58 PF09084 NMT1: NMT1/THI5 like; 23.5 70 0.0015 26.1 2.5 25 109-133 89-113 (216)
59 PRK07579 hypothetical protein; 22.9 1.5E+02 0.0033 26.5 4.6 22 114-137 2-23 (245)
60 TIGR00658 orni_carb_tr ornithi 22.6 52 0.0011 30.0 1.7 24 111-136 146-169 (304)
61 PF03193 DUF258: Protein of un 22.5 72 0.0016 26.7 2.4 35 101-137 23-57 (161)
62 PF00657 Lipase_GDSL: GDSL-lik 21.9 48 0.001 26.7 1.2 11 116-126 1-11 (234)
63 cd01823 SEST_like SEST_like. A 21.6 48 0.001 28.2 1.2 13 114-126 1-13 (259)
64 PF13242 Hydrolase_like: HAD-h 21.4 76 0.0016 22.1 2.0 19 112-130 20-38 (75)
65 PRK02255 putrescine carbamoylt 20.3 78 0.0017 29.4 2.4 24 111-136 152-175 (338)
No 1
>PLN02629 powdery mildew resistance 5
Probab=100.00 E-value=7.8e-72 Score=516.44 Aligned_cols=175 Identities=54% Similarity=1.078 Sum_probs=163.5
Q ss_pred CCCCCCcCcccceeeCCCCCCCCCCCCC-CccCccccccCCCCCCcccceeeecCCCCCCCCChHHHHHHhcCCcEEEec
Q 027858 42 KQVSGCNLFQGRWVIDPSYPLYDSSSCP-FIDAEFDCLKYGRPDKQYLKYSWQPASCAVPRFDGGDFLRRYRGKRIMFVG 120 (217)
Q Consensus 42 ~~~~~Cd~~~G~WV~d~~~PlY~~~~Cp-~i~~~~~C~~nGRpd~~yl~WrWqP~~C~l~rfd~~~fL~~lrgKrl~FVG 120 (217)
...++||+|+|+||+|+++|+|++++|| ||++++||++|||||++|++|||||++|+||||||.+|||+||||||||||
T Consensus 48 ~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVG 127 (387)
T PLN02629 48 ANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVG 127 (387)
T ss_pred CCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEec
Confidence 5567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhcccCCCCeeeeeecCcceEEEEeecceEEEEEEccccccceeccccceEEeccccc-CCCCCCCc
Q 027858 121 DSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQA-GKFWKDMD 199 (217)
Q Consensus 121 DSl~Rnq~~SLlClL~~~~p~~~~~~~~~~~~~~~~f~~yn~Tv~f~WsPfLV~~~~~~~~~~L~lD~~~~-~~~w~~~D 199 (217)
|||+|||||||+|||++++|..++...++++..+|+|++||+||+||||||||+.++....++|+||+++. +++|+++|
T Consensus 128 DSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~~~~~l~LD~id~~a~~w~~~D 207 (387)
T PLN02629 128 DSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQGKRVLKLEEISGNANAWRDAD 207 (387)
T ss_pred cccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCCCceeEEecCcchhhhhhccCC
Confidence 99999999999999999998766555567788999999999999999999999988766667999999987 89999999
Q ss_pred EEEEcccccccCCCCCC
Q 027858 200 VLIFNSWHWWTHTGKAQ 216 (217)
Q Consensus 200 vLV~ntGhWw~~~~~~~ 216 (217)
||||||||||.|++..+
T Consensus 208 vlVfntghWw~~~~~~~ 224 (387)
T PLN02629 208 VLIFNTGHWWSHQGSLQ 224 (387)
T ss_pred EEEEeCccccCCCCeeE
Confidence 99999999999987653
No 2
>PF14416 PMR5N: PMR5 N terminal Domain
Probab=99.96 E-value=1.1e-29 Score=177.04 Aligned_cols=54 Identities=61% Similarity=1.400 Sum_probs=52.7
Q ss_pred CCCcCcccceeeCCCCCCCCCCCCCCccCccccccCCCCCCcccceeeecCCCC
Q 027858 45 SGCNLFQGRWVIDPSYPLYDSSSCPFIDAEFDCLKYGRPDKQYLKYSWQPASCA 98 (217)
Q Consensus 45 ~~Cd~~~G~WV~d~~~PlY~~~~Cp~i~~~~~C~~nGRpd~~yl~WrWqP~~C~ 98 (217)
++||+|+|+||+|+++|||++++||||+++|||++|||||++|++|||||++|+
T Consensus 2 ~~Cd~~~G~WV~D~~~PlY~~~~Cp~i~~~~nC~~nGRpD~~y~~wRWqP~~Cd 55 (55)
T PF14416_consen 2 KRCDYFDGRWVPDPSYPLYTNSTCPFIDEGFNCQKNGRPDSDYLKWRWQPRGCD 55 (55)
T ss_pred CccCcccCEEEeCCCCCccCCCCCCcCCCccchhhcCCCCCccceeeecCCCCC
Confidence 579999999999999999999999999999999999999999999999999996
No 3
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=99.91 E-value=9.3e-25 Score=186.43 Aligned_cols=104 Identities=38% Similarity=0.684 Sum_probs=85.1
Q ss_pred CCCCChHHHHHHhcCCcEEEecchhhHHHHHHHHHhhcccCC-----CCeeeeeecCcceEEEEeecceEEEEEEccccc
Q 027858 99 VPRFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHASVP-----NAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLV 173 (217)
Q Consensus 99 l~rfd~~~fL~~lrgKrl~FVGDSl~Rnq~~SLlClL~~~~p-----~~~~~~~~~~~~~~~~f~~yn~Tv~f~WsPfLV 173 (217)
|++||+.++|++||||+|+|||||++||||+||+|+|.+..+ +........+....+.|+++|+||+|+|+|||+
T Consensus 1 ~~~~d~~~cL~~lr~k~i~fiGDS~~Rq~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~p~l~ 80 (263)
T PF13839_consen 1 LPRFDARECLQRLRNKRIVFIGDSTTRQQYESLVCLLGPEVPSWQESPHSGIEFPNHRNFRYNFPDYNVTLSFYWDPFLV 80 (263)
T ss_pred CChhhHHHHHHHccCCEEEEEechhhHHHHHHHHHHHhccccccccccccccccccCCceEEeecCCCeEEEEecccccc
Confidence 689999999999999999999999999999999999998776 222222233566788899999999999999999
Q ss_pred cceeccccceEEecccc-c-CCCCC----CCcEEEEcccccccCC
Q 027858 174 DIVKQKVGRVLTLNSIQ-A-GKFWK----DMDVLIFNSWHWWTHT 212 (217)
Q Consensus 174 ~~~~~~~~~~L~lD~~~-~-~~~w~----~~DvLV~ntGhWw~~~ 212 (217)
+. +|.++ . ...|. .+||||+|+|+||.+.
T Consensus 81 ~~----------l~~~~~~~~~~~~~~~~~pdvvV~nsG~W~~~~ 115 (263)
T PF13839_consen 81 DQ----------LDSIDEEIANNWPTSGARPDVVVINSGLWYLRR 115 (263)
T ss_pred cc----------ccccchhhhccccccccCCCEEEEEcchhhhhc
Confidence 64 33333 1 34444 8999999999999975
No 4
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.45 E-value=0.0027 Score=54.35 Aligned_cols=21 Identities=19% Similarity=0.591 Sum_probs=20.2
Q ss_pred EEEecchhhHHHHHHHHHhhc
Q 027858 116 IMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 116 l~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|+|||+.|-+|--|+|+|+
T Consensus 2 v~~lgds~~ravykdlv~l~q 22 (183)
T cd01842 2 VVILGDSIQRAVYKDLVLLLQ 22 (183)
T ss_pred EEEEccHHHHHHHHHHHHHhc
Confidence 789999999999999999997
No 5
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=80.52 E-value=0.86 Score=36.37 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=13.9
Q ss_pred CCcEEEecchhhHHH
Q 027858 113 GKRIMFVGDSLSLNM 127 (217)
Q Consensus 113 gKrl~FVGDSl~Rnq 127 (217)
|+||+|+|||++...
T Consensus 1 ~~~v~~~GDSit~g~ 15 (191)
T cd01834 1 GDRIVFIGNSITDRG 15 (191)
T ss_pred CCEEEEeCCChhhcc
Confidence 799999999999976
No 6
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=78.85 E-value=1.8 Score=35.21 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=17.2
Q ss_pred cEEEecchhhHHHHHHHHHhh
Q 027858 115 RIMFVGDSLSLNMWESLSCMI 135 (217)
Q Consensus 115 rl~FVGDSl~Rnq~~SLlClL 135 (217)
||+|+|||++....-++...+
T Consensus 1 ril~iGDS~~~g~~~~l~~~~ 21 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLRAL 21 (200)
T ss_pred CEEEEechHHHHHHHHHHHHh
Confidence 689999999999877766444
No 7
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.71 E-value=2.7 Score=39.35 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=24.6
Q ss_pred HHHhcCCcEEEecchhhHHHHHHHHHhhcc
Q 027858 108 LRRYRGKRIMFVGDSLSLNMWESLSCMIHA 137 (217)
Q Consensus 108 L~~lrgKrl~FVGDSl~Rnq~~SLlClL~~ 137 (217)
.+.=.+++|.|||||+++..-+.|...|..
T Consensus 111 ~k~~~a~kvLvvGDslm~gla~gl~~al~t 140 (354)
T COG2845 111 AKSRDADKVLVVGDSLMQGLAEGLDKALAT 140 (354)
T ss_pred hhCCCCCEEEEechHHhhhhHHHHHHHhcc
Confidence 344467899999999999999998888754
No 8
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=75.47 E-value=1.4 Score=35.14 Aligned_cols=13 Identities=54% Similarity=0.807 Sum_probs=11.7
Q ss_pred CcEEEecchhhHH
Q 027858 114 KRIMFVGDSLSLN 126 (217)
Q Consensus 114 Krl~FVGDSl~Rn 126 (217)
|+|+|+|||++..
T Consensus 1 ~~iv~~GdS~t~~ 13 (174)
T cd01841 1 KNIVFIGDSLFEG 13 (174)
T ss_pred CCEEEEcchhhhc
Confidence 7899999999975
No 9
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=66.13 E-value=4.1 Score=33.48 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.6
Q ss_pred cCCcEEEecchhhHHHHHHHHHhhc
Q 027858 112 RGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 112 rgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
.|++|+|||| ..-|...|++.++.
T Consensus 1 ~gl~i~~vGD-~~~rv~~Sl~~~~~ 24 (158)
T PF00185_consen 1 KGLKIAYVGD-GHNRVAHSLIELLA 24 (158)
T ss_dssp TTEEEEEESS-TTSHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCChHHHHHHHHHH
Confidence 4899999999 65678999998885
No 10
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=64.52 E-value=2.9 Score=33.47 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=12.4
Q ss_pred cEEEecchhhHH-HHHHH
Q 027858 115 RIMFVGDSLSLN-MWESL 131 (217)
Q Consensus 115 rl~FVGDSl~Rn-q~~SL 131 (217)
||+|+|||++-. .|-+.
T Consensus 1 ~iv~~GDS~t~g~~~~~~ 18 (189)
T cd01825 1 RIAQLGDSHIAGDFFTDV 18 (189)
T ss_pred CeeEecCccccccchhhH
Confidence 799999999963 34443
No 11
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=60.28 E-value=4.4 Score=32.76 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=11.3
Q ss_pred cEEEecchhhHHH
Q 027858 115 RIMFVGDSLSLNM 127 (217)
Q Consensus 115 rl~FVGDSl~Rnq 127 (217)
||+|+|||++...
T Consensus 1 ~iv~~GDSit~G~ 13 (177)
T cd01844 1 PWVFYGTSISQGA 13 (177)
T ss_pred CEEEEeCchhcCc
Confidence 6899999999864
No 12
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=59.72 E-value=4.1 Score=33.08 Aligned_cols=13 Identities=54% Similarity=0.861 Sum_probs=11.6
Q ss_pred CcEEEecchhhHH
Q 027858 114 KRIMFVGDSLSLN 126 (217)
Q Consensus 114 Krl~FVGDSl~Rn 126 (217)
+||+|+|||++..
T Consensus 2 ~~i~~lGDSit~G 14 (193)
T cd01835 2 KRLIVVGDSLVYG 14 (193)
T ss_pred cEEEEEcCccccC
Confidence 6899999999975
No 13
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=59.62 E-value=4.2 Score=32.55 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=11.3
Q ss_pred cEEEecchhhHHH
Q 027858 115 RIMFVGDSLSLNM 127 (217)
Q Consensus 115 rl~FVGDSl~Rnq 127 (217)
||+|+|||++...
T Consensus 1 ~i~~~GDSit~g~ 13 (199)
T cd01838 1 KIVLFGDSITQFS 13 (199)
T ss_pred CEEEecCcccccc
Confidence 6899999999863
No 14
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=59.32 E-value=8 Score=32.35 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=13.0
Q ss_pred cCCcEEEecchhhHHH
Q 027858 112 RGKRIMFVGDSLSLNM 127 (217)
Q Consensus 112 rgKrl~FVGDSl~Rnq 127 (217)
...+|+|+|||++...
T Consensus 31 ~~~~iv~lGDSit~g~ 46 (214)
T cd01820 31 KEPDVVFIGDSITQNW 46 (214)
T ss_pred CCCCEEEECchHhhhh
Confidence 3457999999999964
No 15
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=58.98 E-value=4.3 Score=32.50 Aligned_cols=11 Identities=36% Similarity=0.609 Sum_probs=10.0
Q ss_pred cEEEecchhhH
Q 027858 115 RIMFVGDSLSL 125 (217)
Q Consensus 115 rl~FVGDSl~R 125 (217)
||+|+|||++.
T Consensus 1 ~i~~~GDSit~ 11 (185)
T cd01832 1 RYVALGDSITE 11 (185)
T ss_pred CeeEecchhhc
Confidence 69999999996
No 16
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=54.01 E-value=0.98 Score=39.61 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=14.9
Q ss_pred HhcCCcEEEecchhhHHH
Q 027858 110 RYRGKRIMFVGDSLSLNM 127 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rnq 127 (217)
+|-|.+++||||+|.|+.
T Consensus 131 Il~ahkLVfiGDTl~r~~ 148 (210)
T PF12026_consen 131 ILSAHKLVFIGDTLCREA 148 (210)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred EEEeeeeeeeccHHHHHh
Confidence 377889999999999864
No 17
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.57 E-value=6 Score=31.82 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=10.7
Q ss_pred cEEEecchhhHHH
Q 027858 115 RIMFVGDSLSLNM 127 (217)
Q Consensus 115 rl~FVGDSl~Rnq 127 (217)
||+|+|||++...
T Consensus 2 ~i~~~GDSit~G~ 14 (188)
T cd01827 2 KVACVGNSITEGA 14 (188)
T ss_pred eEEEEeccccccc
Confidence 7999999996643
No 18
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.11 E-value=5.2 Score=31.31 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=10.3
Q ss_pred cEEEecchhhHH
Q 027858 115 RIMFVGDSLSLN 126 (217)
Q Consensus 115 rl~FVGDSl~Rn 126 (217)
||++||||++-.
T Consensus 2 ~~~~~Gds~~~g 13 (157)
T cd01833 2 RIMPLGDSITWG 13 (157)
T ss_pred ceeecCCceeec
Confidence 689999999865
No 19
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=52.68 E-value=6.5 Score=31.49 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=11.0
Q ss_pred cEEEecchhhHHH
Q 027858 115 RIMFVGDSLSLNM 127 (217)
Q Consensus 115 rl~FVGDSl~Rnq 127 (217)
+|+|+|||++-..
T Consensus 1 ~i~~iGDSit~G~ 13 (169)
T cd01831 1 KIEFIGDSITCGY 13 (169)
T ss_pred CEEEEeccccccC
Confidence 5899999998863
No 20
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=52.56 E-value=6.4 Score=31.11 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=10.3
Q ss_pred cEEEecchhhHH
Q 027858 115 RIMFVGDSLSLN 126 (217)
Q Consensus 115 rl~FVGDSl~Rn 126 (217)
||+|+|||++..
T Consensus 2 ~i~~~GDSit~G 13 (177)
T cd01822 2 TILALGDSLTAG 13 (177)
T ss_pred eEEEEccccccC
Confidence 799999999754
No 21
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=49.60 E-value=8.7 Score=31.79 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.8
Q ss_pred CCcEEEecchhhHHH
Q 027858 113 GKRIMFVGDSLSLNM 127 (217)
Q Consensus 113 gKrl~FVGDSl~Rnq 127 (217)
+.+|+|+|||++...
T Consensus 10 ~~~iv~~GDSit~G~ 24 (191)
T PRK10528 10 ADTLLILGDSLSAGY 24 (191)
T ss_pred CCEEEEEeCchhhcC
Confidence 679999999999763
No 22
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=48.80 E-value=11 Score=34.47 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=20.8
Q ss_pred HhcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 110 RYRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
.++|++|+||||. .|...|++.++.
T Consensus 144 ~l~g~kva~vGD~--~~v~~S~~~~~~ 168 (302)
T PRK14805 144 DVSKVKLAYVGDG--NNVTHSLMYGAA 168 (302)
T ss_pred CcCCcEEEEEcCC--CccHHHHHHHHH
Confidence 3789999999994 568899998875
No 23
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=48.28 E-value=31 Score=28.52 Aligned_cols=43 Identities=28% Similarity=0.517 Sum_probs=28.5
Q ss_pred CCCC-CCCChHHHHHHh------cCCcEEEecchhhHHHHHHHHHhhcccCC
Q 027858 96 SCAV-PRFDGGDFLRRY------RGKRIMFVGDSLSLNMWESLSCMIHASVP 140 (217)
Q Consensus 96 ~C~l-~rfd~~~fL~~l------rgKrl~FVGDSl~Rnq~~SLlClL~~~~p 140 (217)
|-.+ +|+++.+|+..+ +|++|.|+|.+- ..-+.+...|.+..|
T Consensus 24 g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~--~~~~~~~~~l~~~yP 73 (172)
T PF03808_consen 24 GRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSE--EVLEKAAANLRRRYP 73 (172)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHHHCC
Confidence 5666 788998877553 568999999884 333444555544443
No 24
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=45.23 E-value=7.3 Score=29.28 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=10.4
Q ss_pred EEEecchhhHHH
Q 027858 116 IMFVGDSLSLNM 127 (217)
Q Consensus 116 l~FVGDSl~Rnq 127 (217)
|+|+|||++...
T Consensus 1 i~~~GDS~~~g~ 12 (187)
T cd00229 1 ILVIGDSITAGY 12 (187)
T ss_pred Ceeecccccccc
Confidence 689999999874
No 25
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=44.22 E-value=10 Score=30.34 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=10.4
Q ss_pred CcEEEecchhhH
Q 027858 114 KRIMFVGDSLSL 125 (217)
Q Consensus 114 Krl~FVGDSl~R 125 (217)
.||+|+|||++.
T Consensus 1 ~~i~~~GDSi~~ 12 (183)
T cd04501 1 MRVVCLGDSITY 12 (183)
T ss_pred CeEEEEcccccc
Confidence 379999999996
No 26
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.74 E-value=11 Score=31.14 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=10.3
Q ss_pred cEEEecchhhHH
Q 027858 115 RIMFVGDSLSLN 126 (217)
Q Consensus 115 rl~FVGDSl~Rn 126 (217)
+|+|+|||++..
T Consensus 1 ~I~~~GDSiT~G 12 (208)
T cd01839 1 TILCFGDSNTWG 12 (208)
T ss_pred CEEEEecCcccC
Confidence 689999999864
No 27
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.10 E-value=11 Score=30.46 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=11.7
Q ss_pred CcEEEecchhhHHH
Q 027858 114 KRIMFVGDSLSLNM 127 (217)
Q Consensus 114 Krl~FVGDSl~Rnq 127 (217)
.|++|+|||++-..
T Consensus 3 ~~i~~~GDSit~G~ 16 (191)
T cd01836 3 LRLLVLGDSTAAGV 16 (191)
T ss_pred eEEEEEeccccccc
Confidence 37999999999763
No 28
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=41.78 E-value=20 Score=27.63 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=20.1
Q ss_pred CChHHHHHHhcCCcEEEecchhhHH
Q 027858 102 FDGGDFLRRYRGKRIMFVGDSLSLN 126 (217)
Q Consensus 102 fd~~~fL~~lrgKrl~FVGDSl~Rn 126 (217)
-.-+++++..-+++.++||||-..-
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDsgq~D 77 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDSGQHD 77 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeCCCcC
Confidence 3445788889999999999997654
No 29
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=41.27 E-value=17 Score=33.69 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.8
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||..+ |...|++-++.
T Consensus 153 l~g~kia~vGD~~~-~v~~Sl~~~~~ 177 (332)
T PRK04284 153 YKDIKFTYVGDGRN-NVANALMQGAA 177 (332)
T ss_pred cCCcEEEEecCCCc-chHHHHHHHHH
Confidence 67999999999766 58888888775
No 30
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=41.04 E-value=20 Score=28.98 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=15.8
Q ss_pred HHHHHHhc--CCcEEEecchhh
Q 027858 105 GDFLRRYR--GKRIMFVGDSLS 124 (217)
Q Consensus 105 ~~fL~~lr--gKrl~FVGDSl~ 124 (217)
.++++.|+ +.++++|||+++
T Consensus 185 ~~~i~~l~~~~~~v~~vGDg~n 206 (215)
T PF00702_consen 185 LRIIKELQVKPGEVAMVGDGVN 206 (215)
T ss_dssp HHHHHHHTCTGGGEEEEESSGG
T ss_pred HHHHHHHhcCCCEEEEEccCHH
Confidence 46677776 568999999994
No 31
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.59 E-value=13 Score=30.75 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=10.2
Q ss_pred cEEEecchhhHH
Q 027858 115 RIMFVGDSLSLN 126 (217)
Q Consensus 115 rl~FVGDSl~Rn 126 (217)
.|+|+|||++..
T Consensus 1 ~iv~~GDSiT~G 12 (204)
T cd01830 1 SVVALGDSITDG 12 (204)
T ss_pred CEEEEecccccC
Confidence 489999999964
No 32
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.96 E-value=14 Score=29.31 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=10.5
Q ss_pred EEEecchhhHHH
Q 027858 116 IMFVGDSLSLNM 127 (217)
Q Consensus 116 l~FVGDSl~Rnq 127 (217)
|+|+|||+.+..
T Consensus 2 v~~~GdSi~~~~ 13 (169)
T cd01828 2 LVFLGDSLTEGG 13 (169)
T ss_pred EEEecchhhccC
Confidence 789999999864
No 33
>PLN02527 aspartate carbamoyltransferase
Probab=34.94 E-value=27 Score=31.97 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=20.8
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||-.+-|...|++-.|.
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~ 174 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLA 174 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHH
Confidence 78999999999865467888877764
No 34
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=34.63 E-value=17 Score=29.62 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=11.7
Q ss_pred cEEEecchhhHHHH
Q 027858 115 RIMFVGDSLSLNMW 128 (217)
Q Consensus 115 rl~FVGDSl~Rnq~ 128 (217)
+|+|+|||++....
T Consensus 2 ~i~~~GDS~t~G~~ 15 (198)
T cd01821 2 TIFLAGDSTVADYD 15 (198)
T ss_pred EEEEEecCCcccCC
Confidence 68999999998653
No 35
>PLN02342 ornithine carbamoyltransferase
Probab=34.58 E-value=29 Score=32.52 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=20.9
Q ss_pred HhcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 110 RYRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
.+.|++|+||||- .|...||+.++.
T Consensus 191 ~l~glkva~vGD~--~nva~Sli~~~~ 215 (348)
T PLN02342 191 RLEGTKVVYVGDG--NNIVHSWLLLAA 215 (348)
T ss_pred CcCCCEEEEECCC--chhHHHHHHHHH
Confidence 3789999999995 369999998875
No 36
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=34.47 E-value=25 Score=32.20 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=21.9
Q ss_pred HhcCCcEEEecchhhHHHHHHHHHhhcc
Q 027858 110 RYRGKRIMFVGDSLSLNMWESLSCMIHA 137 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rnq~~SLlClL~~ 137 (217)
.++|++|+||||-..-|...|++-++..
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~ 180 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTR 180 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHH
Confidence 3789999999997655778888877643
No 37
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=34.19 E-value=28 Score=32.35 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=20.8
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||.-+ |...|++.++.
T Consensus 153 l~g~~va~vGd~~~-~v~~Sl~~~~~ 177 (331)
T PRK02102 153 LKGLKLAYVGDGRN-NMANSLMVGGA 177 (331)
T ss_pred CCCCEEEEECCCcc-cHHHHHHHHHH
Confidence 68999999999865 48889888774
No 38
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=33.53 E-value=26 Score=32.60 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=19.9
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
+.|++|+||||-.+ |...|++-++.
T Consensus 154 l~g~~ia~vGD~~~-~v~~Sl~~~~~ 178 (336)
T PRK03515 154 FNEMTLAYAGDARN-NMGNSLLEAAA 178 (336)
T ss_pred cCCCEEEEeCCCcC-cHHHHHHHHHH
Confidence 56899999999434 58888888774
No 39
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=33.35 E-value=20 Score=28.48 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=10.3
Q ss_pred EEEecchhhHHH
Q 027858 116 IMFVGDSLSLNM 127 (217)
Q Consensus 116 l~FVGDSl~Rnq 127 (217)
|+|||||+.+.-
T Consensus 2 i~~~g~s~~~~w 13 (171)
T cd04502 2 ILFYGSSSIRLW 13 (171)
T ss_pred EEEEcCchhcch
Confidence 799999999864
No 40
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=33.27 E-value=21 Score=27.19 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=9.2
Q ss_pred EEecchhhHHH
Q 027858 117 MFVGDSLSLNM 127 (217)
Q Consensus 117 ~FVGDSl~Rnq 127 (217)
+|+|||++-..
T Consensus 1 v~~GDS~t~g~ 11 (179)
T PF13472_consen 1 VFLGDSITAGY 11 (179)
T ss_dssp EEEESHHHHTT
T ss_pred CEEccccccCC
Confidence 69999999864
No 41
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=33.02 E-value=30 Score=32.15 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.4
Q ss_pred hcCCcEEEecchhhHHHHHHHHH
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSC 133 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlC 133 (217)
++|++++||||- -|+-.||+-
T Consensus 151 l~g~k~a~vGDg--NNv~nSl~~ 171 (310)
T COG0078 151 LKGLKLAYVGDG--NNVANSLLL 171 (310)
T ss_pred ccCcEEEEEcCc--chHHHHHHH
Confidence 799999999999 788888764
No 42
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=32.94 E-value=20 Score=29.31 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=10.6
Q ss_pred cEEEecchhhHH
Q 027858 115 RIMFVGDSLSLN 126 (217)
Q Consensus 115 rl~FVGDSl~Rn 126 (217)
+|+|+|||++..
T Consensus 1 ~i~~~GDSit~G 12 (204)
T cd04506 1 KIVALGDSLTEG 12 (204)
T ss_pred CEeEEeccccCc
Confidence 589999999985
No 43
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=32.89 E-value=22 Score=34.80 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=26.1
Q ss_pred HHHHHhcCCcEEEecchhhHHH-HHHHHHhhccc
Q 027858 106 DFLRRYRGKRIMFVGDSLSLNM-WESLSCMIHAS 138 (217)
Q Consensus 106 ~fL~~lrgKrl~FVGDSl~Rnq-~~SLlClL~~~ 138 (217)
.+-+.++||||+.|-||+-|.- ..-++.||+.+
T Consensus 341 pvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReA 374 (470)
T COG0034 341 PVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREA 374 (470)
T ss_pred chHHHhCCCeEEEEccccccCccHHHHHHHHHHh
Confidence 4667899999999999998864 55677777744
No 44
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=32.88 E-value=43 Score=26.53 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.8
Q ss_pred CCcEEEecchhhH
Q 027858 113 GKRIMFVGDSLSL 125 (217)
Q Consensus 113 gKrl~FVGDSl~R 125 (217)
.++++|||||.+=
T Consensus 162 ~~~~i~iGD~~~D 174 (188)
T TIGR01489 162 YQHIIYIGDGVTD 174 (188)
T ss_pred CceEEEECCCcch
Confidence 4689999999874
No 45
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=31.98 E-value=23 Score=28.03 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=12.5
Q ss_pred EEEecchhhHHHHHHHHH
Q 027858 116 IMFVGDSLSLNMWESLSC 133 (217)
Q Consensus 116 l~FVGDSl~Rnq~~SLlC 133 (217)
|.|+|||++-..-..|-.
T Consensus 2 v~~~GDSv~~~~~~~~~~ 19 (150)
T cd01840 2 ITAIGDSVMLDSSPALQE 19 (150)
T ss_pred eeEEeehHHHchHHHHHH
Confidence 678999999865444333
No 46
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=31.50 E-value=33 Score=31.80 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=20.1
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
+.|++|+||||-.+ |...|++.++.
T Consensus 154 l~gl~ia~vGD~~~-~v~~Sl~~~~~ 178 (334)
T PRK01713 154 LSEISYVYIGDARN-NMGNSLLLIGA 178 (334)
T ss_pred cCCcEEEEECCCcc-CHHHHHHHHHH
Confidence 67899999999654 48888887774
No 47
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=30.34 E-value=23 Score=31.78 Aligned_cols=12 Identities=58% Similarity=1.173 Sum_probs=8.9
Q ss_pred hcCCcEEEecch
Q 027858 111 YRGKRIMFVGDS 122 (217)
Q Consensus 111 lrgKrl~FVGDS 122 (217)
|.||+|.||||-
T Consensus 43 L~gk~il~lGDD 54 (243)
T PF01861_consen 43 LEGKRILFLGDD 54 (243)
T ss_dssp STT-EEEEES-T
T ss_pred ccCCEEEEEcCC
Confidence 789999999993
No 48
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=28.88 E-value=36 Score=31.67 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=20.4
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
+.|++|+||||-..-|..-|++.+|.
T Consensus 157 l~g~kia~vGD~~~~rv~~Sl~~~l~ 182 (338)
T PRK08192 157 IDGMHIAMVGDLKFGRTVHSLSRLLC 182 (338)
T ss_pred cCCCEEEEECcCCCCchHHHHHHHHH
Confidence 67899999999754467788877654
No 49
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=28.16 E-value=38 Score=30.92 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=21.4
Q ss_pred HhcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 110 RYRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
.++|++|+||||-..-|...|++-++.
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a 173 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALT 173 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHH
Confidence 478999999999765577788777764
No 50
>KOG3482 consensus Small nuclear ribonucleoprotein (snRNP) SMF [RNA processing and modification]
Probab=27.19 E-value=54 Score=24.45 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.6
Q ss_pred CCCCCCChHHHHHHhcCCcEE
Q 027858 97 CAVPRFDGGDFLRRYRGKRIM 117 (217)
Q Consensus 97 C~l~rfd~~~fL~~lrgKrl~ 117 (217)
|+...-+|+.||..|.||+++
T Consensus 2 ~a~~PvNPKpFL~~l~gk~V~ 22 (79)
T KOG3482|consen 2 SAKQPVNPKPFLNGLTGKPVL 22 (79)
T ss_pred CCcccCCchHHHhhccCCeEE
Confidence 555566999999999999876
No 51
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=27.16 E-value=43 Score=31.14 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.2
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|++|||..+ |...|++.++.
T Consensus 154 l~gl~va~vGD~~~-~v~~S~~~~~~ 178 (334)
T PRK12562 154 FNEMTLVYAGDARN-NMGNSMLEAAA 178 (334)
T ss_pred cCCcEEEEECCCCC-CHHHHHHHHHH
Confidence 57899999999764 58888888764
No 52
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=26.69 E-value=46 Score=32.18 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.6
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||-..-|...|++.++.
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la 264 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLA 264 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHH
Confidence 57899999999864567888887763
No 53
>PRK10113 cell division modulator; Provisional
Probab=25.54 E-value=33 Score=25.36 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=13.8
Q ss_pred HHhcCCcEEEe--cchhhHH
Q 027858 109 RRYRGKRIMFV--GDSLSLN 126 (217)
Q Consensus 109 ~~lrgKrl~FV--GDSl~Rn 126 (217)
=.||||-++|| |||.-|.
T Consensus 37 W~LrGKYVAFvl~ge~FrRS 56 (80)
T PRK10113 37 WMLRGKYVAFVLMGESFLRS 56 (80)
T ss_pred heeccceEEEEEechhhccC
Confidence 35899999986 7777663
No 54
>PF14647 FAM91_N: FAM91 N-terminus
Probab=25.53 E-value=67 Score=29.89 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCCCChHHHHHHhcCCcEEEecchhhHHHHHHHHHhhccc
Q 027858 99 VPRFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHAS 138 (217)
Q Consensus 99 l~rfd~~~fL~~lrgKrl~FVGDSl~Rnq~~SLlClL~~~ 138 (217)
||-|.|+|.|+++. ++||||-.|+--..+.
T Consensus 109 LPNFTAaD~LRllG----------IGRNqYIdlmn~~RS~ 138 (308)
T PF14647_consen 109 LPNFTAADCLRLLG----------IGRNQYIDLMNKCRSK 138 (308)
T ss_pred CCCCcHHHHHHHhc----------chHHHHHHHHHHhchh
Confidence 99999999997663 5699999998876544
No 55
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=25.31 E-value=48 Score=30.39 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=19.9
Q ss_pred HhcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 110 RYRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
.++|++|++||| .-|...|++-++.
T Consensus 150 ~l~g~~va~vGd--~~rv~~Sl~~~~~ 174 (311)
T PRK14804 150 PLNQKQLTYIGV--HNNVVNSLIGITA 174 (311)
T ss_pred CCCCCEEEEECC--CCcHHHHHHHHHH
Confidence 368999999999 3467888887775
No 56
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=23.97 E-value=44 Score=30.46 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=20.6
Q ss_pred HHhcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 109 RRYRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 109 ~~lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
..++|++|++||| .+ |-..|++.+|.
T Consensus 148 g~l~gl~i~~vGd-~~-~v~~Sl~~~l~ 173 (304)
T PRK00779 148 GSLKGLKVAWVGD-GN-NVANSLLLAAA 173 (304)
T ss_pred CCcCCcEEEEEeC-CC-ccHHHHHHHHH
Confidence 3478999999999 34 48888888775
No 57
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=23.78 E-value=57 Score=31.77 Aligned_cols=28 Identities=39% Similarity=0.622 Sum_probs=18.9
Q ss_pred HHHHHhcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 106 DFLRRYRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 106 ~fL~~lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
+..+.++|||++++||+.- -.||+..|.
T Consensus 307 d~~~~L~GKrvai~Gdp~~---~i~LarfL~ 334 (457)
T CHL00073 307 DYLDLVRGKSVFFMGDNLL---EISLARFLI 334 (457)
T ss_pred HHHHHHCCCEEEEECCCcH---HHHHHHHHH
Confidence 3556689999999999543 334444444
No 58
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=23.54 E-value=70 Score=26.07 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHhcCCcEEEecchhhHHHHHHHHH
Q 027858 109 RRYRGKRIMFVGDSLSLNMWESLSC 133 (217)
Q Consensus 109 ~~lrgKrl~FVGDSl~Rnq~~SLlC 133 (217)
+-|+||||++.+.|.+.-.+..++.
T Consensus 89 ~DLkGK~i~v~~~s~~~~~~~~~l~ 113 (216)
T PF09084_consen 89 ADLKGKKIGVSRGSSSEYFLRALLK 113 (216)
T ss_dssp GGGTTSEEEESTTSHHHHHHHHHHH
T ss_pred HHhCCCEEEEecCcchhHHHHHHHH
Confidence 4479999999998887777776654
No 59
>PRK07579 hypothetical protein; Provisional
Probab=22.88 E-value=1.5e+02 Score=26.53 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=17.1
Q ss_pred CcEEEecchhhHHHHHHHHHhhcc
Q 027858 114 KRIMFVGDSLSLNMWESLSCMIHA 137 (217)
Q Consensus 114 Krl~FVGDSl~Rnq~~SLlClL~~ 137 (217)
|+|+|+||- +.+++-+.||+..
T Consensus 2 k~i~~~~~~--~~~~~~~~~~~~~ 23 (245)
T PRK07579 2 KTILVLTDN--VHAHALAVDLIAR 23 (245)
T ss_pred ceEEEEccc--HHHHHHHHHHHhh
Confidence 799999994 5677777787754
No 60
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=22.57 E-value=52 Score=29.98 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.2
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
+.|.+|++|||. + |-..|++.+|.
T Consensus 146 l~g~~v~~vGd~-~-~v~~Sl~~~l~ 169 (304)
T TIGR00658 146 LKGVKVVYVGDG-N-NVCNSLMLAGA 169 (304)
T ss_pred CCCcEEEEEeCC-C-chHHHHHHHHH
Confidence 688999999996 4 58899998875
No 61
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=22.51 E-value=72 Score=26.67 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=24.7
Q ss_pred CCChHHHHHHhcCCcEEEecchhhHHHHHHHHHhhcc
Q 027858 101 RFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHA 137 (217)
Q Consensus 101 rfd~~~fL~~lrgKrl~FVGDSl~Rnq~~SLlClL~~ 137 (217)
.-.-.++.+.++||.++|+|-|=.-- -||+-.|..
T Consensus 23 ~~g~~~l~~~l~~k~~vl~G~SGvGK--SSLiN~L~~ 57 (161)
T PF03193_consen 23 GEGIEELKELLKGKTSVLLGQSGVGK--SSLINALLP 57 (161)
T ss_dssp TTTHHHHHHHHTTSEEEEECSTTSSH--HHHHHHHHT
T ss_pred CcCHHHHHHHhcCCEEEEECCCCCCH--HHHHHHHHh
Confidence 34556889999999999999885443 355555543
No 62
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=21.85 E-value=48 Score=26.71 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=10.1
Q ss_pred EEEecchhhHH
Q 027858 116 IMFVGDSLSLN 126 (217)
Q Consensus 116 l~FVGDSl~Rn 126 (217)
|+++|||++-.
T Consensus 1 i~~fGDS~td~ 11 (234)
T PF00657_consen 1 IVVFGDSLTDG 11 (234)
T ss_dssp EEEEESHHHHT
T ss_pred CEEEeehhccc
Confidence 68999999998
No 63
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=21.55 E-value=48 Score=28.17 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=10.8
Q ss_pred CcEEEecchhhHH
Q 027858 114 KRIMFVGDSLSLN 126 (217)
Q Consensus 114 Krl~FVGDSl~Rn 126 (217)
.+++++|||++-.
T Consensus 1 ~~~v~iGDS~~~G 13 (259)
T cd01823 1 VRYVALGDSYAAG 13 (259)
T ss_pred CCEEEecchhhcC
Confidence 3789999999865
No 64
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=21.41 E-value=76 Score=22.11 Aligned_cols=19 Identities=32% Similarity=0.463 Sum_probs=13.8
Q ss_pred cCCcEEEecchhhHHHHHH
Q 027858 112 RGKRIMFVGDSLSLNMWES 130 (217)
Q Consensus 112 rgKrl~FVGDSl~Rnq~~S 130 (217)
.-.++++||||+..-+--+
T Consensus 20 ~~~~~~~VGD~~~~Di~~a 38 (75)
T PF13242_consen 20 DPSRCVMVGDSLETDIEAA 38 (75)
T ss_dssp GGGGEEEEESSTTTHHHHH
T ss_pred CHHHEEEEcCCcHhHHHHH
Confidence 3468999999977665433
No 65
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=20.34 E-value=78 Score=29.45 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=19.8
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
+.|++|++|||- + |...|++.++.
T Consensus 152 l~glkv~~vGD~-~-~v~~Sl~~~~~ 175 (338)
T PRK02255 152 LEDCKVVFVGDA-T-QVCVSLMFIAT 175 (338)
T ss_pred CCCCEEEEECCC-c-hHHHHHHHHHH
Confidence 678999999995 3 68899888874
Done!