Query 027858
Match_columns 217
No_of_seqs 143 out of 681
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hf7_A Putative acylhydrolase; 83.7 0.4 1.4E-05 38.3 1.7 15 112-126 25-39 (209)
2 3hp4_A GDSL-esterase; psychrot 81.0 0.42 1.4E-05 36.6 0.8 15 112-126 1-15 (185)
3 3rjt_A Lipolytic protein G-D-S 77.6 0.83 2.8E-05 35.4 1.5 15 112-126 7-21 (216)
4 4h08_A Putative hydrolase; GDS 74.8 1.8 6.3E-05 33.7 2.9 21 115-135 22-42 (200)
5 3mil_A Isoamyl acetate-hydroly 71.0 1.1 3.9E-05 35.3 0.8 15 111-125 1-15 (240)
6 1ivn_A Thioesterase I; hydrola 69.9 1.3 4.6E-05 34.2 0.9 14 113-126 1-14 (190)
7 1yzf_A Lipase/acylhydrolase; s 68.6 1.5 5.1E-05 33.3 0.9 13 114-126 2-14 (195)
8 2q0q_A ARYL esterase; SGNH hyd 65.7 1.7 5.9E-05 33.9 0.8 13 114-126 3-15 (216)
9 2hsj_A Putative platelet activ 64.3 2.8 9.6E-05 32.6 1.8 16 112-127 33-48 (214)
10 3dci_A Arylesterase; SGNH_hydr 62.0 2.2 7.5E-05 34.3 0.8 13 114-126 24-36 (232)
11 3dc7_A Putative uncharacterize 60.7 2.8 9.7E-05 33.3 1.2 17 110-126 18-34 (232)
12 1vjg_A Putative lipase from th 59.9 2.3 7.9E-05 33.5 0.5 17 110-126 17-33 (218)
13 1fxw_F Alpha2, platelet-activa 59.0 3.9 0.00013 32.7 1.8 23 105-127 29-53 (229)
14 3p94_A GDSL-like lipase; serin 57.9 3.5 0.00012 31.6 1.3 13 115-127 24-36 (204)
15 1es9_A PAF-AH, platelet-activa 57.4 4.4 0.00015 32.4 1.8 16 112-127 37-52 (232)
16 3bzw_A Putative lipase; protei 56.0 3.8 0.00013 33.9 1.3 16 111-126 24-39 (274)
17 2vpt_A Lipolytic enzyme; ester 54.2 3.2 0.00011 32.8 0.5 13 114-126 6-18 (215)
18 2w9x_A AXE2A, CJCE2B, putative 49.0 6.1 0.00021 34.7 1.5 15 112-126 141-155 (366)
19 2waa_A Acetyl esterase, xylan 47.0 5.3 0.00018 34.8 0.8 15 112-126 131-145 (347)
20 2wao_A Endoglucanase E; plant 46.5 5.8 0.0002 34.3 0.9 15 112-126 121-135 (341)
21 3grf_A Ornithine carbamoyltran 43.2 12 0.00041 33.4 2.5 26 110-136 158-183 (328)
22 3t6g_B Breast cancer anti-estr 43.2 1.2 4.1E-05 38.3 -3.9 16 111-126 144-159 (229)
23 4amu_A Ornithine carbamoyltran 41.6 13 0.00046 33.7 2.6 25 111-136 178-202 (365)
24 3r7f_A Aspartate carbamoyltran 40.2 13 0.00044 32.8 2.2 26 111-136 145-170 (304)
25 3tpf_A Otcase, ornithine carba 39.8 15 0.00051 32.4 2.6 24 111-136 143-167 (307)
26 1k7c_A Rhamnogalacturonan acet 38.1 9.8 0.00033 30.8 1.0 12 115-126 2-13 (233)
27 2o14_A Hypothetical protein YX 37.2 11 0.00039 33.4 1.3 16 111-126 160-175 (375)
28 3csu_A Protein (aspartate carb 36.8 17 0.00057 32.2 2.3 26 111-136 152-177 (310)
29 1pg5_A Aspartate carbamoyltran 34.3 18 0.0006 31.8 2.1 26 111-136 147-172 (299)
30 3sds_A Ornithine carbamoyltran 34.2 18 0.00062 32.6 2.2 23 112-136 187-209 (353)
31 3skv_A SSFX3; jelly roll, GDSL 33.4 12 0.00042 33.7 0.9 13 113-125 185-197 (385)
32 1vcc_A DNA topoisomerase I; DN 33.1 4.6 0.00016 28.9 -1.5 15 114-128 55-70 (77)
33 4ekn_B Aspartate carbamoyltran 33.0 21 0.00071 31.5 2.3 26 111-136 149-174 (306)
34 3q98_A Transcarbamylase; rossm 32.5 21 0.00072 32.7 2.3 26 111-136 189-219 (399)
35 1oth_A Protein (ornithine tran 32.0 18 0.00062 32.1 1.8 24 111-136 153-176 (321)
36 3gd5_A Otcase, ornithine carba 31.6 21 0.00073 31.7 2.2 24 111-136 155-178 (323)
37 4f2g_A Otcase 1, ornithine car 31.6 21 0.00073 31.5 2.2 24 111-136 152-175 (309)
38 4ep1_A Otcase, ornithine carba 31.3 22 0.00074 32.0 2.2 24 111-136 177-200 (340)
39 1ml4_A Aspartate transcarbamoy 31.2 20 0.00068 31.6 1.9 27 111-137 153-179 (308)
40 2yfk_A Aspartate/ornithine car 31.2 23 0.00078 32.7 2.4 27 111-137 186-217 (418)
41 4a8t_A Putrescine carbamoyltra 30.4 23 0.00079 31.7 2.2 24 111-136 173-196 (339)
42 4a8p_A Putrescine carbamoyltra 28.4 26 0.00089 31.6 2.2 24 111-136 151-174 (355)
43 2qru_A Uncharacterized protein 26.4 55 0.0019 26.3 3.7 23 113-135 95-117 (274)
44 4fe3_A Cytosolic 5'-nucleotida 25.9 24 0.00084 29.4 1.5 14 112-125 229-242 (297)
45 1duv_G Octase-1, ornithine tra 25.7 36 0.0012 30.4 2.6 25 111-136 153-177 (333)
46 1vlv_A Otcase, ornithine carba 24.8 38 0.0013 30.1 2.6 26 111-137 165-190 (325)
47 1dxh_A Ornithine carbamoyltran 24.7 35 0.0012 30.4 2.4 26 110-136 152-177 (335)
48 3d6n_B Aspartate carbamoyltran 23.7 36 0.0012 29.7 2.2 26 111-136 144-169 (291)
49 2w37_A Ornithine carbamoyltran 23.5 41 0.0014 30.4 2.6 25 111-136 174-198 (359)
50 2ef0_A Ornithine carbamoyltran 23.4 37 0.0013 29.8 2.2 24 111-136 152-175 (301)
51 1pvv_A Otcase, ornithine carba 23.2 37 0.0013 29.9 2.2 24 111-136 153-176 (315)
52 4h31_A Otcase, ornithine carba 22.8 44 0.0015 30.0 2.6 25 111-136 179-203 (358)
53 1esc_A Esterase; 2.10A {Strept 20.9 26 0.00088 29.5 0.6 13 114-126 6-18 (306)
54 2i6u_A Otcase, ornithine carba 20.5 49 0.0017 29.1 2.4 25 111-136 146-170 (307)
No 1
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=83.72 E-value=0.4 Score=38.33 Aligned_cols=15 Identities=27% Similarity=0.764 Sum_probs=13.1
Q ss_pred cCCcEEEecchhhHH
Q 027858 112 RGKRIMFVGDSLSLN 126 (217)
Q Consensus 112 rgKrl~FVGDSl~Rn 126 (217)
.+++|+|+|||+++.
T Consensus 25 ~~~~Iv~~GDSit~g 39 (209)
T 4hf7_A 25 KEKRVVFMGNXITEG 39 (209)
T ss_dssp GGCCEEEEESHHHHH
T ss_pred CCCeEEEECcHHHhC
Confidence 567899999999985
No 2
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=80.98 E-value=0.42 Score=36.63 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.6
Q ss_pred cCCcEEEecchhhHH
Q 027858 112 RGKRIMFVGDSLSLN 126 (217)
Q Consensus 112 rgKrl~FVGDSl~Rn 126 (217)
.|++|+|+|||++..
T Consensus 1 ~~~~i~~~GDSit~G 15 (185)
T 3hp4_A 1 MDNTILILGDXLSAA 15 (185)
T ss_dssp -CEEEEEEECTTTTT
T ss_pred CCCeEEEECCccccc
Confidence 378999999999974
No 3
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=77.59 E-value=0.83 Score=35.37 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=13.1
Q ss_pred cCCcEEEecchhhHH
Q 027858 112 RGKRIMFVGDSLSLN 126 (217)
Q Consensus 112 rgKrl~FVGDSl~Rn 126 (217)
.+++|+|+|||++..
T Consensus 7 ~~~~i~~~GDSit~g 21 (216)
T 3rjt_A 7 PGSKLVMVGDSITDC 21 (216)
T ss_dssp TTCEEEEEESHHHHT
T ss_pred CCCEEEEEecccccc
Confidence 478999999999965
No 4
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=74.85 E-value=1.8 Score=33.70 Aligned_cols=21 Identities=10% Similarity=0.523 Sum_probs=15.2
Q ss_pred cEEEecchhhHHHHHHHHHhh
Q 027858 115 RIMFVGDSLSLNMWESLSCMI 135 (217)
Q Consensus 115 rl~FVGDSl~Rnq~~SLlClL 135 (217)
||+|+|||++..-...|...|
T Consensus 22 rVl~iGDSit~G~~~~l~~~l 42 (200)
T 4h08_A 22 HVLLIGNSITRGYYGKVEAAL 42 (200)
T ss_dssp EEEEEESHHHHHHHHHHHHHT
T ss_pred eEEEEchhHHhhhHHHHHHHh
Confidence 699999999987444444444
No 5
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=70.99 E-value=1.1 Score=35.33 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.9
Q ss_pred hcCCcEEEecchhhH
Q 027858 111 YRGKRIMFVGDSLSL 125 (217)
Q Consensus 111 lrgKrl~FVGDSl~R 125 (217)
|.-+||+|+|||++.
T Consensus 1 ~~~~~i~~~GDSit~ 15 (240)
T 3mil_A 1 MDYEKFLLFGDSITE 15 (240)
T ss_dssp CCCEEEEEEESHHHH
T ss_pred CCcccEEEEccchhh
Confidence 345799999999998
No 6
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=69.95 E-value=1.3 Score=34.15 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=12.1
Q ss_pred CCcEEEecchhhHH
Q 027858 113 GKRIMFVGDSLSLN 126 (217)
Q Consensus 113 gKrl~FVGDSl~Rn 126 (217)
.|+|+|+|||++..
T Consensus 1 ~~~i~~~GDSit~g 14 (190)
T 1ivn_A 1 ADTLLILGDSLSAG 14 (190)
T ss_dssp CEEEEEEECHHHHC
T ss_pred CCcEEEEecCcccC
Confidence 37899999999985
No 7
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=68.65 E-value=1.5 Score=33.29 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=11.7
Q ss_pred CcEEEecchhhHH
Q 027858 114 KRIMFVGDSLSLN 126 (217)
Q Consensus 114 Krl~FVGDSl~Rn 126 (217)
|+|+|+|||++..
T Consensus 2 ~~i~~~GDS~t~g 14 (195)
T 1yzf_A 2 RKIVLFGDSITAG 14 (195)
T ss_dssp EEEEEEESHHHHC
T ss_pred CeEEEEccccccC
Confidence 5899999999987
No 8
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=65.69 E-value=1.7 Score=33.87 Aligned_cols=13 Identities=54% Similarity=0.838 Sum_probs=11.4
Q ss_pred CcEEEecchhhHH
Q 027858 114 KRIMFVGDSLSLN 126 (217)
Q Consensus 114 Krl~FVGDSl~Rn 126 (217)
|+|+|+|||++..
T Consensus 3 ~~i~~~GDSit~G 15 (216)
T 2q0q_A 3 KRILCFGDSLTWG 15 (216)
T ss_dssp EEEEEEESHHHHT
T ss_pred ceEEEEecCcccC
Confidence 6899999999964
No 9
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=64.30 E-value=2.8 Score=32.64 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.4
Q ss_pred cCCcEEEecchhhHHH
Q 027858 112 RGKRIMFVGDSLSLNM 127 (217)
Q Consensus 112 rgKrl~FVGDSl~Rnq 127 (217)
...+|+|+|||++...
T Consensus 33 ~~~~i~~~GDSit~g~ 48 (214)
T 2hsj_A 33 VEPNILFIGDSIVEYY 48 (214)
T ss_dssp SCCSEEEEESHHHHTC
T ss_pred ccCCEEEEecchhcCC
Confidence 4678999999999863
No 10
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=62.00 E-value=2.2 Score=34.32 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=11.5
Q ss_pred CcEEEecchhhHH
Q 027858 114 KRIMFVGDSLSLN 126 (217)
Q Consensus 114 Krl~FVGDSl~Rn 126 (217)
|+|+|+|||++..
T Consensus 24 ~~I~~lGDSit~G 36 (232)
T 3dci_A 24 KTVLAFGDSLTWG 36 (232)
T ss_dssp EEEEEEESHHHHT
T ss_pred CEEEEEECccccC
Confidence 6899999999864
No 11
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=60.74 E-value=2.8 Score=33.31 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.0
Q ss_pred HhcCCcEEEecchhhHH
Q 027858 110 RYRGKRIMFVGDSLSLN 126 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rn 126 (217)
.+..++|+|+|||++..
T Consensus 18 ~~~~~~i~~lGDSit~G 34 (232)
T 3dc7_A 18 HVSFKRPAWLGDSITAN 34 (232)
T ss_dssp CBCCSSEEEEESTTTST
T ss_pred CCCcceEEEEccccccc
Confidence 34568999999999975
No 12
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=59.85 E-value=2.3 Score=33.51 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=14.1
Q ss_pred HhcCCcEEEecchhhHH
Q 027858 110 RYRGKRIMFVGDSLSLN 126 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rn 126 (217)
....++|+|+|||++..
T Consensus 17 ~~~~~~i~~lGDSit~g 33 (218)
T 1vjg_A 17 SKTQIRICFVGDSFVNG 33 (218)
T ss_dssp CCEEEEEEEEESHHHHT
T ss_pred cCCCceEEEEccccccC
Confidence 34567999999999986
No 13
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=59.04 E-value=3.9 Score=32.73 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=16.6
Q ss_pred HHHHHH--hcCCcEEEecchhhHHH
Q 027858 105 GDFLRR--YRGKRIMFVGDSLSLNM 127 (217)
Q Consensus 105 ~~fL~~--lrgKrl~FVGDSl~Rnq 127 (217)
..|.+. -...+|+|+|||++...
T Consensus 29 ~~~~~~~~~~~~~i~~~GDSit~g~ 53 (229)
T 1fxw_F 29 NRFVLDCKDKEPDVLFVGDSMVQLM 53 (229)
T ss_dssp HHHHHHHHHCCCSEEEEESHHHHGG
T ss_pred HHHHHHcccCCCCEEEEecchhcCC
Confidence 345444 35678999999999864
No 14
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=57.94 E-value=3.5 Score=31.63 Aligned_cols=13 Identities=23% Similarity=0.624 Sum_probs=11.6
Q ss_pred cEEEecchhhHHH
Q 027858 115 RIMFVGDSLSLNM 127 (217)
Q Consensus 115 rl~FVGDSl~Rnq 127 (217)
+|+|+|||++..-
T Consensus 24 ~i~~~GDSit~g~ 36 (204)
T 3p94_A 24 NVVFMGNSITDGW 36 (204)
T ss_dssp EEEEEESHHHHTH
T ss_pred eEEEEccchhhcc
Confidence 8999999999764
No 15
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=57.36 E-value=4.4 Score=32.36 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=13.8
Q ss_pred cCCcEEEecchhhHHH
Q 027858 112 RGKRIMFVGDSLSLNM 127 (217)
Q Consensus 112 rgKrl~FVGDSl~Rnq 127 (217)
...+|+|+|||++...
T Consensus 37 ~~~~i~~~GDSit~g~ 52 (232)
T 1es9_A 37 KEPEVVFIGDSLVQLM 52 (232)
T ss_dssp CCCSEEEEESHHHHTH
T ss_pred CCCCEEEEechHhhcc
Confidence 5678999999999884
No 16
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=55.97 E-value=3.8 Score=33.91 Aligned_cols=16 Identities=31% Similarity=0.808 Sum_probs=13.3
Q ss_pred hcCCcEEEecchhhHH
Q 027858 111 YRGKRIMFVGDSLSLN 126 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rn 126 (217)
..+++|+|+|||++..
T Consensus 24 ~~~~~iv~lGDSiT~G 39 (274)
T 3bzw_A 24 WQGKKVGYIGDSITDP 39 (274)
T ss_dssp TTTCEEEEEESTTTCT
T ss_pred CCCCEEEEEecCcccC
Confidence 4578999999999853
No 17
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=54.18 E-value=3.2 Score=32.84 Aligned_cols=13 Identities=46% Similarity=0.503 Sum_probs=11.3
Q ss_pred CcEEEecchhhHH
Q 027858 114 KRIMFVGDSLSLN 126 (217)
Q Consensus 114 Krl~FVGDSl~Rn 126 (217)
.+|+|+|||++..
T Consensus 6 ~~i~~~GDSit~G 18 (215)
T 2vpt_A 6 IKIMPVGDSCTEG 18 (215)
T ss_dssp EEEEEEESHHHHT
T ss_pred eEEEecccccccC
Confidence 4799999999975
No 18
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=49.02 E-value=6.1 Score=34.69 Aligned_cols=15 Identities=40% Similarity=0.868 Sum_probs=12.9
Q ss_pred cCCcEEEecchhhHH
Q 027858 112 RGKRIMFVGDSLSLN 126 (217)
Q Consensus 112 rgKrl~FVGDSl~Rn 126 (217)
..++|+|+|||++-.
T Consensus 141 ~~~~I~~iGDSIT~G 155 (366)
T 2w9x_A 141 RKRQIEFIGDSFTVG 155 (366)
T ss_dssp CCCEEEEEESHHHHT
T ss_pred CCceEEEEecccccc
Confidence 567899999999964
No 19
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=46.96 E-value=5.3 Score=34.83 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.9
Q ss_pred cCCcEEEecchhhHH
Q 027858 112 RGKRIMFVGDSLSLN 126 (217)
Q Consensus 112 rgKrl~FVGDSl~Rn 126 (217)
..++|+|+|||++-.
T Consensus 131 ~~~~I~~iGDSIT~G 145 (347)
T 2waa_A 131 PQRKILVLGDSVTCG 145 (347)
T ss_dssp CSEEEEEEESTTTTT
T ss_pred CCceEEEeecccccc
Confidence 567899999999965
No 20
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=46.45 E-value=5.8 Score=34.28 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.8
Q ss_pred cCCcEEEecchhhHH
Q 027858 112 RGKRIMFVGDSLSLN 126 (217)
Q Consensus 112 rgKrl~FVGDSl~Rn 126 (217)
..++|+|+|||++-.
T Consensus 121 ~~~~I~~iGDSiT~G 135 (341)
T 2wao_A 121 LERKIEFIGDSITCA 135 (341)
T ss_dssp CSEEEEEEESHHHHT
T ss_pred CCceEEEEccccccC
Confidence 467899999999965
No 21
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=43.24 E-value=12 Score=33.39 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=22.2
Q ss_pred HhcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 110 RYRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
.++|++|+||||-.+ |...|++..+.
T Consensus 158 ~l~gl~va~vGD~~~-~va~Sl~~~~~ 183 (328)
T 3grf_A 158 GFKGIKFAYCGDSMN-NVTYDLMRGCA 183 (328)
T ss_dssp TGGGCCEEEESCCSS-HHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCc-chHHHHHHHHH
Confidence 478999999999866 68999988775
No 22
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=43.19 E-value=1.2 Score=38.31 Aligned_cols=16 Identities=31% Similarity=0.742 Sum_probs=13.9
Q ss_pred hcCCcEEEecchhhHH
Q 027858 111 YRGKRIMFVGDSLSLN 126 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rn 126 (217)
|-+.+++||||.+.|+
T Consensus 144 lsAHKLVfIGDTL~r~ 159 (229)
T 3t6g_B 144 LSAHKLVFIGDTLSRQ 159 (229)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred EEeeeeeeecchHHHh
Confidence 6678899999999986
No 23
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=41.58 E-value=13 Score=33.67 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.4
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||-.+ |...|++.++.
T Consensus 178 l~glkva~vGD~~n-nva~Sl~~~~~ 202 (365)
T 4amu_A 178 LKNKKIVFIGDYKN-NVGVSTMIGAA 202 (365)
T ss_dssp CTTCEEEEESSTTS-HHHHHHHHHHH
T ss_pred CCCCEEEEECCCCc-chHHHHHHHHH
Confidence 68999999999866 58999988874
No 24
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=40.23 E-value=13 Score=32.85 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=21.6
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||-.+-|...|++..+.
T Consensus 145 l~glkva~vGD~~~~rva~Sl~~~~~ 170 (304)
T 3r7f_A 145 FKGLTVSIHGDIKHSRVARSNAEVLT 170 (304)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHH
Confidence 68999999999766678888887774
No 25
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=39.84 E-value=15 Score=32.45 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.1
Q ss_pred hc-CCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YR-GKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lr-gKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++ |++|+|||| . -|...|++..+.
T Consensus 143 l~~gl~va~vGD-~-~~va~Sl~~~~~ 167 (307)
T 3tpf_A 143 QNGIAKVAFIGD-S-NNMCNSWLITAA 167 (307)
T ss_dssp GGGCCEEEEESC-S-SHHHHHHHHHHH
T ss_pred CCCCCEEEEEcC-C-CccHHHHHHHHH
Confidence 67 999999999 3 468999988875
No 26
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=38.07 E-value=9.8 Score=30.82 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.9
Q ss_pred cEEEecchhhHH
Q 027858 115 RIMFVGDSLSLN 126 (217)
Q Consensus 115 rl~FVGDSl~Rn 126 (217)
+|+|+|||++.+
T Consensus 2 ~I~~~GDS~t~g 13 (233)
T 1k7c_A 2 TVYLAGDSTMAK 13 (233)
T ss_dssp EEEEECCTTTST
T ss_pred EEEEEecCCCcC
Confidence 699999999986
No 27
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=37.24 E-value=11 Score=33.35 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=13.7
Q ss_pred hcCCcEEEecchhhHH
Q 027858 111 YRGKRIMFVGDSLSLN 126 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rn 126 (217)
..+++|+|+|||++..
T Consensus 160 ~~~~~Iv~lGDSiT~G 175 (375)
T 2o14_A 160 VTNRTIYVGGDSTVCN 175 (375)
T ss_dssp CCCCEEEEEECTTTSC
T ss_pred CCCcEEEEecCccccC
Confidence 3567999999999987
No 28
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=36.81 E-value=17 Score=32.22 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=21.9
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|++|||-..-|...|++..+.
T Consensus 152 l~gl~va~vGD~~~~rva~Sl~~~~~ 177 (310)
T 3csu_A 152 LDNLHVAMVGDLKYGRTVHSLTQALA 177 (310)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHH
Confidence 78999999999765578899988874
No 29
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=34.26 E-value=18 Score=31.84 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.0
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|++|||-..-|...|++-.+.
T Consensus 147 l~gl~va~vGD~~~~rva~Sl~~~~~ 172 (299)
T 1pg5_A 147 IDGLVFALLGDLKYARTVNSLLRILT 172 (299)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGG
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHH
Confidence 78999999999866568899988875
No 30
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=34.22 E-value=18 Score=32.60 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.8
Q ss_pred cCCcEEEecchhhHHHHHHHHHhhc
Q 027858 112 RGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 112 rgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
+|++|+||||-. |...|++..|.
T Consensus 187 ~glkva~vGD~~--nva~Sl~~~l~ 209 (353)
T 3sds_A 187 EGLKIAWVGDAN--NVLFDLAIAAT 209 (353)
T ss_dssp TTCEEEEESCCC--HHHHHHHHHHH
T ss_pred CCCEEEEECCCc--hHHHHHHHHHH
Confidence 899999999973 68999988775
No 31
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=33.40 E-value=12 Score=33.65 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=11.5
Q ss_pred CCcEEEecchhhH
Q 027858 113 GKRIMFVGDSLSL 125 (217)
Q Consensus 113 gKrl~FVGDSl~R 125 (217)
.++|+|+|||++.
T Consensus 185 ~~~Iv~~GDSiT~ 197 (385)
T 3skv_A 185 KPHWIHYGDSICH 197 (385)
T ss_dssp CCEEEEEECSSCT
T ss_pred CceEEEEeccccC
Confidence 6889999999974
No 32
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=33.09 E-value=4.6 Score=28.92 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=11.3
Q ss_pred CcEEEec-chhhHHHH
Q 027858 114 KRIMFVG-DSLSLNMW 128 (217)
Q Consensus 114 Krl~FVG-DSl~Rnq~ 128 (217)
.+++||| ||-+|-||
T Consensus 55 ~~lIfvG~DSKgrkQY 70 (77)
T 1vcc_A 55 TRLIFVGSDSKGRRQY 70 (77)
T ss_dssp TSEEEEEECTTSCEEE
T ss_pred CceEEEeecCCCceee
Confidence 4699999 77777654
No 33
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=33.03 E-value=21 Score=31.47 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.5
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||-..-|...|++..+.
T Consensus 149 l~glkva~vGD~~~~rva~Sl~~~~~ 174 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGRTVHSLVYALS 174 (306)
T ss_dssp STTCEEEEESCTTTCHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHH
Confidence 68999999999765468888888774
No 34
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=32.53 E-value=21 Score=32.72 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=19.6
Q ss_pred hcCCcEEEecch---hhH--HHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDS---LSL--NMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDS---l~R--nq~~SLlClL~ 136 (217)
++|++|++|||= .+| |...|++..+.
T Consensus 189 l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~ 219 (399)
T 3q98_A 189 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMT 219 (399)
T ss_dssp GTTCEEEEECCCCSSCCCCTHHHHHHHHHHG
T ss_pred cCCCEEEEEEecccccCcchHHHHHHHHHHH
Confidence 578899999883 344 77888887774
No 35
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=31.99 E-value=18 Score=32.10 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.0
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|++|||- + |...|++-.+.
T Consensus 153 l~gl~va~vGD~-~-~va~Sl~~~~~ 176 (321)
T 1oth_A 153 LKGLTLSWIGDG-N-NILHSIMMSAA 176 (321)
T ss_dssp CTTCEEEEESCS-S-HHHHHHHTTTG
T ss_pred cCCcEEEEECCc-h-hhHHHHHHHHH
Confidence 689999999994 3 78999888774
No 36
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=31.63 E-value=21 Score=31.74 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.2
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||- -|...|++..+.
T Consensus 155 l~glkva~vGD~--~rva~Sl~~~~~ 178 (323)
T 3gd5_A 155 LAGLKLAYVGDG--NNVAHSLLLGCA 178 (323)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--CcHHHHHHHHHH
Confidence 689999999997 568888887764
No 37
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=31.56 E-value=21 Score=31.46 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.3
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||- -|...|++..+.
T Consensus 152 l~glkva~vGD~--~~va~Sl~~~~~ 175 (309)
T 4f2g_A 152 IRGKTVAWVGDA--NNMLYTWIQAAR 175 (309)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--cchHHHHHHHHH
Confidence 689999999994 458999988875
No 38
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=31.34 E-value=22 Score=31.98 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.2
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||- -|...|++..+.
T Consensus 177 l~glkva~vGD~--~nva~Sl~~~~~ 200 (340)
T 4ep1_A 177 FKGIKLAYVGDG--NNVCHSLLLASA 200 (340)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHH
Confidence 789999999996 458889888775
No 39
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=31.22 E-value=20 Score=31.62 Aligned_cols=27 Identities=22% Similarity=0.157 Sum_probs=22.2
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhcc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIHA 137 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~~ 137 (217)
++|++|++|||-.+-|...|++-.+..
T Consensus 153 l~gl~va~vGD~~~~rva~Sl~~~~~~ 179 (308)
T 1ml4_A 153 IDGLKIGLLGDLKYGRTVHSLAEALTF 179 (308)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGG
T ss_pred CCCeEEEEeCCCCcCchHHHHHHHHHH
Confidence 678999999997655788999888753
No 40
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=31.16 E-value=23 Score=32.70 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=20.6
Q ss_pred hcCCcEEEecc---hhhH--HHHHHHHHhhcc
Q 027858 111 YRGKRIMFVGD---SLSL--NMWESLSCMIHA 137 (217)
Q Consensus 111 lrgKrl~FVGD---Sl~R--nq~~SLlClL~~ 137 (217)
++|++|++||| |.+| |...|++-++..
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~ 217 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTR 217 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGG
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHH
Confidence 67899999987 3455 788888887753
No 41
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=30.36 E-value=23 Score=31.72 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.1
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||- -|...|++..+.
T Consensus 173 l~glkva~vGD~--~rva~Sl~~~~~ 196 (339)
T 4a8t_A 173 LEDCKVVFVGDA--TQVCFSLGLITT 196 (339)
T ss_dssp GGGCEEEEESSC--CHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHH
Confidence 678999999997 568889888774
No 42
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=28.45 E-value=26 Score=31.63 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.2
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|+||||- -|...|++..+.
T Consensus 151 l~glkva~vGD~--~rva~Sl~~~~~ 174 (355)
T 4a8p_A 151 LEDCKVVFVGDA--TQVCFSLGLITT 174 (355)
T ss_dssp GGGCEEEEESCC--CHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHH
Confidence 678999999997 568889888774
No 43
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=26.42 E-value=55 Score=26.34 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=19.5
Q ss_pred CCcEEEecchhhHHHHHHHHHhh
Q 027858 113 GKRIMFVGDSLSLNMWESLSCMI 135 (217)
Q Consensus 113 gKrl~FVGDSl~Rnq~~SLlClL 135 (217)
..+++++|||.+-|.-..++..+
T Consensus 95 ~~~i~l~G~SaGG~lA~~~a~~~ 117 (274)
T 2qru_A 95 NQSFGLCGRSAGGYLMLQLTKQL 117 (274)
T ss_dssp TCCEEEEEETHHHHHHHHHHHHH
T ss_pred CCcEEEEEECHHHHHHHHHHHHH
Confidence 67999999999999988777544
No 44
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=25.90 E-value=24 Score=29.38 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.6
Q ss_pred cCCcEEEecchhhH
Q 027858 112 RGKRIMFVGDSLSL 125 (217)
Q Consensus 112 rgKrl~FVGDSl~R 125 (217)
.|+++++|||++|=
T Consensus 229 ~~~~v~~vGDGiND 242 (297)
T 4fe3_A 229 DNSNIILLGDSQGD 242 (297)
T ss_dssp TCCEEEEEESSGGG
T ss_pred cCCEEEEEeCcHHH
Confidence 45679999999986
No 45
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=25.73 E-value=36 Score=30.36 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=19.8
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|.+|++|||--+ |...||+-.+.
T Consensus 153 l~gl~ia~vGD~~~-~va~Sl~~~~~ 177 (333)
T 1duv_G 153 FNEMTLVYAGDARN-NMGNSMLEAAA 177 (333)
T ss_dssp GGGCEEEEESCTTS-HHHHHHHHHHH
T ss_pred CCCcEEEEECCCcc-chHHHHHHHHH
Confidence 67799999999523 78888888764
No 46
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=24.84 E-value=38 Score=30.07 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=20.6
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhcc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIHA 137 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~~ 137 (217)
++|++|++|||--+ |...|++-.+..
T Consensus 165 l~gl~va~vGD~~~-rva~Sl~~~~~~ 190 (325)
T 1vlv_A 165 LKGVKVVFMGDTRN-NVATSLMIACAK 190 (325)
T ss_dssp STTCEEEEESCTTS-HHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCc-CcHHHHHHHHHH
Confidence 68999999999323 688898888753
No 47
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=24.70 E-value=35 Score=30.42 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=20.5
Q ss_pred HhcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 110 RYRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 110 ~lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
.++|++|++|||--+ |...||+-.+.
T Consensus 152 ~l~gl~va~vGD~~~-~va~Sl~~~~~ 177 (335)
T 1dxh_A 152 PLHDISYAYLGDARN-NMGNSLLLIGA 177 (335)
T ss_dssp CGGGCEEEEESCCSS-HHHHHHHHHHH
T ss_pred CcCCeEEEEecCCcc-chHHHHHHHHH
Confidence 367899999999523 78889888774
No 48
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=23.75 E-value=36 Score=29.74 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=21.0
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|++|||=..-|...|++-.+.
T Consensus 144 l~gl~va~vGDl~~~rva~Sl~~~~~ 169 (291)
T 3d6n_B 144 VKDLRVLYVGDIKHSRVFRSGAPLLN 169 (291)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHH
Confidence 78999999999555677888877764
No 49
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=23.49 E-value=41 Score=30.37 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.3
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|.+|++|||--+ |...||+-.+.
T Consensus 174 l~gl~va~vGD~~~-rva~Sl~~~~~ 198 (359)
T 2w37_A 174 LQGLTLTFMGDGRN-NVANSLLVTGA 198 (359)
T ss_dssp CTTCEEEEESCTTS-HHHHHHHHHHH
T ss_pred cCCeEEEEECCCcc-chHHHHHHHHH
Confidence 68999999999533 78888888774
No 50
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=23.42 E-value=37 Score=29.82 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=19.8
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|++|||- -|...|++-.+.
T Consensus 152 l~gl~ia~vGD~--~rva~Sl~~~~~ 175 (301)
T 2ef0_A 152 LAGLEVAWVGDG--NNVLNSLLEVAP 175 (301)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHH
T ss_pred cCCcEEEEECCC--chhHHHHHHHHH
Confidence 789999999995 468888887774
No 51
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=23.19 E-value=37 Score=29.95 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.0
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|++|||- -|...|++-.+.
T Consensus 153 l~gl~va~vGD~--~rva~Sl~~~~~ 176 (315)
T 1pvv_A 153 IKGVKVVYVGDG--NNVAHSLMIAGT 176 (315)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHH
T ss_pred cCCcEEEEECCC--cchHHHHHHHHH
Confidence 689999999995 468888888775
No 52
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=22.76 E-value=44 Score=29.96 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=19.8
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
+.|++|++|||--+ |...|++.++.
T Consensus 179 l~gl~ia~vGD~~~-~va~S~~~~~~ 203 (358)
T 4h31_A 179 LADIQFAYLGDARN-NVGNSLMVGAA 203 (358)
T ss_dssp GGGCEEEEESCTTS-HHHHHHHHHHH
T ss_pred cCceEEEecCCCCc-ccchHHHHHHH
Confidence 66789999999534 68888887774
No 53
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A
Probab=20.87 E-value=26 Score=29.52 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=11.1
Q ss_pred CcEEEecchhhHH
Q 027858 114 KRIMFVGDSLSLN 126 (217)
Q Consensus 114 Krl~FVGDSl~Rn 126 (217)
++++++|||++-.
T Consensus 6 ~~~valGDS~taG 18 (306)
T 1esc_A 6 VPTVFFGDSYTAN 18 (306)
T ss_dssp EEEEECCSHHHHT
T ss_pred ceEEEECchhhhC
Confidence 4799999999864
No 54
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=20.51 E-value=49 Score=29.08 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=20.2
Q ss_pred hcCCcEEEecchhhHHHHHHHHHhhc
Q 027858 111 YRGKRIMFVGDSLSLNMWESLSCMIH 136 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rnq~~SLlClL~ 136 (217)
++|++|++|||--+ |...|++-.+.
T Consensus 146 l~gl~va~vGD~~~-rva~Sl~~~~~ 170 (307)
T 2i6u_A 146 LRGLRLSYFGDGAN-NMAHSLLLGGV 170 (307)
T ss_dssp CTTCEEEEESCTTS-HHHHHHHHHHH
T ss_pred cCCeEEEEECCCCc-CcHHHHHHHHH
Confidence 67899999999423 78888888775
Done!