BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027859
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 9   PIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYLVC 61
           P    F  TD+ L    L R   G  LP  +I +V+ Y   P +LP+        WY   
Sbjct: 16  PPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFT 75

Query: 62  ---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVM 112
                    S+ N +A +G W+A G    +      +G +  L F+ G+ P   KTDW+M
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIM 135

Query: 113 QEFRI 117
            E+R+
Sbjct: 136 HEYRL 140


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)

Query: 7   STPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYL 59
           S P    F  TDE L    L R   G      +I +++ Y   P  LP+        WY 
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 75

Query: 60  VC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDW 110
                      S+ N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 135

Query: 111 VMQEFRITQKRLYGDKKEEDSSSLCRVF 138
           +M E+R+ +        + D   LCR++
Sbjct: 136 IMHEYRLIEPSRRNGSTKLDDWVLCRIY 163


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)

Query: 7   STPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYL 59
           S P    F  TDE L    L R   G      +I +++ Y   P  LP+        WY 
Sbjct: 19  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 78

Query: 60  VC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDW 110
                      S+ N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W
Sbjct: 79  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 138

Query: 111 VMQEFRITQKRLYGDKKEEDSSSLCRVF 138
           +M E+R+ +        + D   LCR++
Sbjct: 139 IMHEYRLIEPSRRNGSTKLDDWVLCRIY 166


>pdb|4F52|E Chain E, Structure Of A Glomulin-Rbx1-Cul1 Complex
 pdb|4F52|F Chain F, Structure Of A Glomulin-Rbx1-Cul1 Complex
          Length = 596

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 32/117 (27%)

Query: 58  YLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRI 117
           YLV        Q G W   G     F     IG   +   +E ++ N ++          
Sbjct: 482 YLVIKDNENDNQTGLWTELGNIENNFLKPLHIGLNMSKAHYEAEIKNSQEA--------- 532

Query: 118 TQKRLYGDKKEEDSSSLCRVFLSGKQSPNH--EMQQKLFSANINNETHSHSTELSFD 172
                      + S  LC + +SG++ PN   EMQ K+           HS   +FD
Sbjct: 533 -----------QKSKDLCSITVSGEEIPNMPPEMQLKVL----------HSALFTFD 568


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,063,743
Number of Sequences: 62578
Number of extensions: 287730
Number of successful extensions: 465
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 12
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)