Query 027859
Match_columns 217
No_of_seqs 158 out of 898
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:14:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1E-52 3.6E-57 347.8 13.8 138 5-142 12-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.1E-52 3.8E-57 347.0 13.0 139 5-143 14-168 (171)
3 1ldd_A APC2WHB, anaphase promo 55.9 5.9 0.0002 27.6 2.0 26 9-34 37-63 (74)
4 3dct_B Nuclear receptor coacti 25.0 31 0.001 18.1 1.2 14 15-28 2-15 (21)
5 4dox_A Coat protein; all helix 22.7 46 0.0016 27.9 2.5 25 2-26 149-173 (226)
6 2jv2_A Putative uncharacterize 22.2 38 0.0013 23.8 1.7 29 18-46 26-54 (83)
7 2oh5_A Polyhedrin, C-polyhedri 16.3 97 0.0033 24.9 3.0 28 70-97 140-168 (248)
8 3g1g_A GAG polyprotein, capsid 15.4 90 0.0031 22.3 2.3 22 15-36 62-83 (87)
9 1cmb_A Met APO-repressor; DNA- 14.1 1.9E+02 0.0063 20.9 3.7 35 15-53 50-85 (104)
10 2ojp_A DHDPS, dihydrodipicolin 13.3 1.2E+02 0.0041 25.5 3.0 27 8-35 103-129 (292)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1e-52 Score=347.78 Aligned_cols=138 Identities=29% Similarity=0.587 Sum_probs=124.3
Q ss_pred CCCCCCCeeecCCHHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCeEEEeee---------ecCccc
Q 027859 5 TASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCS---------KENTSA 68 (217)
Q Consensus 5 ~~~LPpGfrF~PTDeELV~-YL~~Ki~g~plp~~~I~~vDvy~~~Pw~Lp------~~~wYFFs~---------R~~R~t 68 (217)
.+.|||||||+|||||||. ||++|+.|.++|.++|+++|||.+|||+|| +.+||||++ |.||++
T Consensus 12 ~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t 91 (174)
T 3ulx_A 12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAA 91 (174)
T ss_dssp TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEE
T ss_pred ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeec
Confidence 4689999999999999999 999999999999999999999999999999 578999998 568999
Q ss_pred CCceEEecCcceeEeeCCceeEEEEEeeeeeCCCCCCCCcCeEEEEEEeCCccccC-----CCCCCCCeEEEEEEEcCC
Q 027859 69 QHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYG-----DKKEEDSSSLCRVFLSGK 142 (217)
Q Consensus 69 ~~G~Wk~~G~~k~I~~~~~~vG~Kktl~Fy~g~~~~g~kT~WvM~EY~l~~~~~~~-----~~~~~~~~VLCrI~~k~~ 142 (217)
++||||++|++++|.+++.+||+||+|+||.|++|++.||+|+||||+|.+..... .....++|||||||+|+.
T Consensus 92 ~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 92 GNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp TTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC
T ss_pred CCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCC
Confidence 99999999999999988888999999999999999999999999999999865432 113468999999999975
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.1e-52 Score=346.97 Aligned_cols=139 Identities=28% Similarity=0.543 Sum_probs=122.4
Q ss_pred CCCCCCCeeecCCHHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCeEEEeee---------ecCccc
Q 027859 5 TASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCS---------KENTSA 68 (217)
Q Consensus 5 ~~~LPpGfrF~PTDeELV~-YL~~Ki~g~plp~~~I~~vDvy~~~Pw~Lp------~~~wYFFs~---------R~~R~t 68 (217)
...|||||||+|||||||. ||++|+.|.+++.++|+++|||.+|||+|| +++||||++ |.||++
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t 93 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA 93 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccC
Confidence 4689999999999999999 999999999999999999999999999998 679999998 578999
Q ss_pred CCceEEecCcceeEeeCCceeEEEEEeeeeeCCCCCCCCcCeEEEEEEeCCccccCCCCCCCCeEEEEEEEcCCC
Q 027859 69 QHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQ 143 (217)
Q Consensus 69 ~~G~Wk~~G~~k~I~~~~~~vG~Kktl~Fy~g~~~~g~kT~WvM~EY~l~~~~~~~~~~~~~~~VLCrI~~k~~~ 143 (217)
++||||++|++++|..++.+||+||+|+||.|++|++.||+|+||||+|.+..........++|||||||+|+..
T Consensus 94 ~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 94 GSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp TTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred CCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999999999988889999999999999999999999999999998643222245689999999999764
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=55.92 E-value=5.9 Score=27.62 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCCeeecC-CHHHHHHHHHHHHcCCCC
Q 027859 9 PIDVDFAS-TDENLFGSLERMIRGSPL 34 (217)
Q Consensus 9 PpGfrF~P-TDeELV~YL~~Ki~g~pl 34 (217)
|.|+.|.. |++||-.||..++....|
T Consensus 37 ~~~~~~~~it~~eL~~fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEGYLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 66899998 999999999999987654
No 4
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=24.97 E-value=31 Score=18.08 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=10.6
Q ss_pred cCCHHHHHHHHHHH
Q 027859 15 ASTDENLFGSLERM 28 (217)
Q Consensus 15 ~PTDeELV~YL~~K 28 (217)
.+.|.+|+.||..|
T Consensus 2 e~kdhqllrylldk 15 (21)
T 3dct_B 2 ESKDHQLLRYLLDK 15 (26)
T ss_pred chhHHHHHHHHHcc
Confidence 36788999988754
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=22.73 E-value=46 Score=27.89 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=19.0
Q ss_pred CCCCCCCCCCeeecCCHHHHHHHHH
Q 027859 2 CPPTASTPIDVDFASTDENLFGSLE 26 (217)
Q Consensus 2 ~~~~~~LPpGfrF~PTDeELV~YL~ 26 (217)
+|.++.-+-|..+.||++|++.+-.
T Consensus 149 n~AAl~P~~GLiR~PT~~E~iA~~t 173 (226)
T 4dox_A 149 NPAAMQPPSGLTRSPTQEERIANAT 173 (226)
T ss_dssp CTTSCCCTTCCSSCCCHHHHHHHHT
T ss_pred CccccCCCCCCCCCCCHHHHHHHHH
Confidence 4555566669999999999998433
No 6
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=22.25 E-value=38 Score=23.76 Aligned_cols=29 Identities=3% Similarity=0.149 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCceeecCCCC
Q 027859 18 DENLFGSLERMIRGSPLPCNVINDVNPYN 46 (217)
Q Consensus 18 DeELV~YL~~Ki~g~plp~~~I~~vDvy~ 46 (217)
+.++..||++++.|+|+-.+.+..+++++
T Consensus 26 ~~~~~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 26 PPDFVDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp CHHHHHHHHHHHTTSEECTTCEEEEEETT
T ss_pred CccHHHHHHHHHCCCCccCCCEEEEeeCC
Confidence 45565599999999998765555566654
No 7
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=16.32 E-value=97 Score=24.95 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=22.5
Q ss_pred CceEEecC-cceeEeeCCceeEEEEEeee
Q 027859 70 HGQWRAKG-ETCEIFSNSYIIGWRTTLEF 97 (217)
Q Consensus 70 ~G~Wk~~G-~~k~I~~~~~~vG~Kktl~F 97 (217)
.--|.++| +-+.|..++.+||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 34599999 45889999999999987754
No 8
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=15.36 E-value=90 Score=22.28 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=13.3
Q ss_pred cCCHHHHHHHHHHHHcCCCCCC
Q 027859 15 ASTDENLFGSLERMIRGSPLPC 36 (217)
Q Consensus 15 ~PTDeELV~YL~~Ki~g~plp~ 36 (217)
.|+.||||.|+..|..-.||.+
T Consensus 62 ~~~~~e~Ik~~l~~~~~~~~~~ 83 (87)
T 3g1g_A 62 LTTPGEIIKYVLDRQKTAPLTD 83 (87)
T ss_dssp CCSHHHHHHHHHHHHC------
T ss_pred CCChHHHHHHHHHHhhcCCccc
Confidence 4778999998888877666543
No 9
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=14.12 E-value=1.9e+02 Score=20.85 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=25.8
Q ss_pred cCCHHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC
Q 027859 15 ASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP 53 (217)
Q Consensus 15 ~PTDeELV~-YL~~Ki~g~plp~~~I~~vDvy~~~Pw~Lp 53 (217)
|-|..||+. -...-..|+|||.+ -|+-...|.++|
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP 85 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIP 85 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSC
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccch
Confidence 568889999 33455689999953 577777788777
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=13.26 E-value=1.2e+02 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=19.0
Q ss_pred CCCCeeecCCHHHHHHHHHHHHcCCCCC
Q 027859 8 TPIDVDFASTDENLFGSLERMIRGSPLP 35 (217)
Q Consensus 8 LPpGfrF~PTDeELV~YL~~Ki~g~plp 35 (217)
+|| |-|.||+++|+.|.+.-+...++|
T Consensus 103 ~~P-~y~~~s~~~l~~~f~~ia~a~~lP 129 (292)
T 2ojp_A 103 VTP-YYNRPSQEGLYQHFKAIAEHTDLP 129 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHHHHHTTCSSC
T ss_pred CCC-CCCCCCHHHHHHHHHHHHHhcCCC
Confidence 355 448899999999777666555554
Done!