Query 027860
Match_columns 217
No_of_seqs 213 out of 2260
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:33:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 4.9E-21 1.1E-25 151.4 11.7 104 112-217 37-142 (238)
2 PRK11088 rrmA 23S rRNA methylt 99.8 2.7E-20 5.8E-25 152.0 12.5 150 41-215 17-172 (272)
3 PF01209 Ubie_methyltran: ubiE 99.8 4E-20 8.8E-25 147.1 9.1 102 113-216 34-138 (233)
4 KOG4300 Predicted methyltransf 99.8 6.2E-19 1.4E-23 133.8 9.7 129 79-216 32-167 (252)
5 PLN02244 tocopherol O-methyltr 99.8 5.6E-18 1.2E-22 142.3 15.4 104 112-216 99-208 (340)
6 PLN02396 hexaprenyldihydroxybe 99.8 7.9E-18 1.7E-22 139.6 12.0 90 125-216 131-220 (322)
7 PLN02233 ubiquinone biosynthes 99.7 4.9E-17 1.1E-21 131.9 13.5 92 124-216 72-167 (261)
8 PRK05785 hypothetical protein; 99.7 3.7E-17 7.9E-22 129.9 11.6 82 125-216 51-132 (226)
9 COG2227 UbiG 2-polyprenyl-3-me 99.7 5.1E-18 1.1E-22 132.4 4.8 87 125-215 59-145 (243)
10 TIGR02752 MenG_heptapren 2-hep 99.7 3.9E-16 8.5E-21 124.4 13.0 102 113-216 32-136 (231)
11 KOG1540 Ubiquinone biosynthesi 99.7 7.5E-16 1.6E-20 120.7 13.0 103 114-216 88-199 (296)
12 PRK11036 putative S-adenosyl-L 99.7 3E-16 6.5E-21 127.0 10.9 99 116-216 35-134 (255)
13 PF13847 Methyltransf_31: Meth 99.7 2.9E-16 6.2E-21 117.4 9.5 89 125-216 3-95 (152)
14 PF08241 Methyltransf_11: Meth 99.7 1.1E-16 2.5E-21 109.3 6.6 82 130-216 1-82 (95)
15 PRK10258 biotin biosynthesis p 99.6 1.4E-15 3.1E-20 122.7 10.9 93 116-216 32-125 (251)
16 PRK14103 trans-aconitate 2-met 99.6 2.1E-15 4.6E-20 122.0 9.4 91 116-216 19-111 (255)
17 TIGR03587 Pse_Me-ase pseudamin 99.6 2.2E-15 4.8E-20 117.8 7.9 76 125-208 43-119 (204)
18 PF12847 Methyltransf_18: Meth 99.6 3.5E-15 7.6E-20 105.5 8.0 81 125-207 1-84 (112)
19 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.1E-14 2.5E-19 117.2 11.6 103 104-210 36-141 (247)
20 PRK01683 trans-aconitate 2-met 99.6 1.3E-14 2.9E-19 117.5 10.4 95 114-216 19-115 (258)
21 PRK11207 tellurite resistance 99.6 1.4E-14 3.1E-19 112.8 9.3 80 125-208 30-109 (197)
22 PRK15068 tRNA mo(5)U34 methylt 99.6 1.7E-14 3.7E-19 120.2 10.2 91 124-216 121-211 (322)
23 PF07021 MetW: Methionine bios 99.6 3.2E-15 7E-20 113.6 5.3 85 124-217 12-98 (193)
24 PRK06202 hypothetical protein; 99.6 2.7E-14 5.9E-19 114.0 10.7 88 124-216 59-153 (232)
25 PTZ00098 phosphoethanolamine N 99.6 1.4E-14 3.1E-19 117.6 8.9 97 115-215 41-140 (263)
26 COG2230 Cfa Cyclopropane fatty 99.6 1.8E-14 4E-19 116.1 9.0 99 107-209 53-152 (283)
27 KOG1270 Methyltransferases [Co 99.5 5E-15 1.1E-19 116.6 5.3 86 126-215 90-179 (282)
28 PF13649 Methyltransf_25: Meth 99.5 6.8E-15 1.5E-19 102.4 5.2 79 129-210 1-84 (101)
29 PLN02336 phosphoethanolamine N 99.5 2.4E-14 5.2E-19 125.6 9.8 96 118-216 258-354 (475)
30 TIGR00740 methyltransferase, p 99.5 5.4E-14 1.2E-18 112.7 10.6 89 118-209 46-137 (239)
31 PLN02490 MPBQ/MSBQ methyltrans 99.5 3.6E-14 7.8E-19 118.3 9.6 88 124-216 112-200 (340)
32 TIGR02021 BchM-ChlM magnesium 99.5 1.5E-13 3.4E-18 108.6 12.6 92 113-209 40-134 (219)
33 PF02353 CMAS: Mycolic acid cy 99.5 3E-14 6.4E-19 116.0 8.7 101 105-209 41-142 (273)
34 TIGR02081 metW methionine bios 99.5 2.8E-14 6E-19 110.9 7.8 83 125-216 13-97 (194)
35 PRK11873 arsM arsenite S-adeno 99.5 6.4E-14 1.4E-18 114.4 9.8 91 124-216 76-168 (272)
36 TIGR00452 methyltransferase, p 99.5 8.3E-14 1.8E-18 115.2 9.8 97 118-216 113-210 (314)
37 PRK08317 hypothetical protein; 99.5 1.9E-13 4.2E-18 108.8 10.5 100 114-216 7-109 (241)
38 TIGR00477 tehB tellurite resis 99.5 1.1E-13 2.4E-18 107.6 8.6 80 125-209 30-109 (195)
39 TIGR02072 BioC biotin biosynth 99.5 1.9E-13 4E-18 109.0 9.7 86 125-216 34-120 (240)
40 PRK00216 ubiE ubiquinone/menaq 99.5 6E-13 1.3E-17 106.1 11.8 100 115-215 40-142 (239)
41 PF08242 Methyltransf_12: Meth 99.5 1E-14 2.2E-19 101.0 1.2 84 130-215 1-87 (99)
42 PRK07580 Mg-protoporphyrin IX 99.5 3.5E-13 7.6E-18 107.1 10.1 81 125-210 63-143 (230)
43 PRK12335 tellurite resistance 99.5 6.9E-14 1.5E-18 115.1 6.2 79 125-208 120-198 (287)
44 COG4106 Tam Trans-aconitate me 99.5 1E-13 2.2E-18 106.4 6.4 96 111-214 15-112 (257)
45 smart00828 PKS_MT Methyltransf 99.5 2.4E-13 5.1E-18 107.9 8.1 87 127-215 1-88 (224)
46 PF03848 TehB: Tellurite resis 99.4 7.9E-13 1.7E-17 101.6 10.0 81 125-210 30-110 (192)
47 PRK00107 gidB 16S rRNA methylt 99.4 1E-12 2.2E-17 101.2 10.7 75 125-202 45-120 (187)
48 TIGR00138 gidB 16S rRNA methyl 99.4 1.3E-12 2.7E-17 100.4 10.7 82 125-210 42-124 (181)
49 PRK13944 protein-L-isoaspartat 99.4 1.5E-12 3.2E-17 102.0 11.1 91 118-209 64-157 (205)
50 PF05401 NodS: Nodulation prot 99.4 8.2E-13 1.8E-17 100.7 8.8 84 121-210 38-122 (201)
51 PF13489 Methyltransf_23: Meth 99.4 1.4E-13 3.1E-18 103.1 4.7 80 124-216 21-100 (161)
52 PLN02585 magnesium protoporphy 99.4 1.3E-12 2.8E-17 108.3 10.5 82 125-210 144-228 (315)
53 PRK06922 hypothetical protein; 99.4 1.1E-12 2.4E-17 116.2 10.6 80 125-207 418-500 (677)
54 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.5E-12 5.5E-17 101.5 11.5 98 114-215 27-127 (223)
55 PRK13942 protein-L-isoaspartat 99.4 4.8E-12 1E-16 99.6 11.6 89 118-208 68-159 (212)
56 PRK00121 trmB tRNA (guanine-N( 99.4 2.2E-12 4.8E-17 100.8 8.8 86 119-206 34-123 (202)
57 TIGR00080 pimt protein-L-isoas 99.4 7.9E-12 1.7E-16 98.7 11.2 89 118-208 69-160 (215)
58 PLN03075 nicotianamine synthas 99.4 8.6E-12 1.9E-16 101.8 11.6 103 111-215 108-217 (296)
59 PRK11705 cyclopropane fatty ac 99.3 5.8E-12 1.3E-16 107.4 9.7 91 111-209 152-243 (383)
60 PF08003 Methyltransf_9: Prote 99.3 6.4E-12 1.4E-16 101.8 9.4 91 124-216 114-204 (315)
61 KOG1271 Methyltransferases [Ge 99.3 1.3E-11 2.7E-16 92.5 10.1 79 126-205 68-147 (227)
62 TIGR02469 CbiT precorrin-6Y C5 99.3 1.5E-11 3.2E-16 88.1 9.9 87 118-206 11-100 (124)
63 KOG1541 Predicted protein carb 99.3 7.8E-12 1.7E-16 96.3 7.9 77 125-209 50-127 (270)
64 smart00138 MeTrc Methyltransfe 99.3 9.6E-12 2.1E-16 101.1 8.9 86 125-211 99-220 (264)
65 PLN02336 phosphoethanolamine N 99.3 7.6E-12 1.7E-16 109.8 8.1 88 118-210 29-119 (475)
66 TIGR01983 UbiG ubiquinone bios 99.3 3.2E-11 6.9E-16 95.5 10.3 88 125-215 45-133 (224)
67 PRK05134 bifunctional 3-demeth 99.3 2.9E-11 6.2E-16 96.5 10.0 88 124-215 47-135 (233)
68 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.8E-11 3.8E-16 95.2 7.8 80 125-206 16-99 (194)
69 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.4E-11 2.9E-16 97.0 7.1 85 125-210 34-129 (213)
70 smart00650 rADc Ribosomal RNA 99.3 3.7E-11 8.1E-16 91.3 9.3 84 117-205 4-88 (169)
71 PRK08287 cobalt-precorrin-6Y C 99.2 8.2E-11 1.8E-15 90.8 10.5 86 118-207 23-110 (187)
72 PF05175 MTS: Methyltransferas 99.2 7.6E-11 1.6E-15 89.7 10.1 79 125-206 31-110 (170)
73 KOG1499 Protein arginine N-met 99.2 5.8E-11 1.2E-15 97.6 9.9 91 113-205 47-138 (346)
74 PF01135 PCMT: Protein-L-isoas 99.2 7.8E-11 1.7E-15 92.2 10.0 89 118-208 64-155 (209)
75 PF13659 Methyltransf_26: Meth 99.2 1.9E-11 4.1E-16 86.9 6.0 80 126-206 1-82 (117)
76 PRK00312 pcm protein-L-isoaspa 99.2 1.2E-10 2.6E-15 91.7 10.9 88 118-208 70-158 (212)
77 PRK14121 tRNA (guanine-N(7)-)- 99.2 8E-11 1.7E-15 99.5 10.3 87 118-206 114-204 (390)
78 TIGR03534 RF_mod_PrmC protein- 99.2 1.3E-10 2.8E-15 93.6 10.7 84 117-203 79-163 (251)
79 PRK13255 thiopurine S-methyltr 99.2 6.2E-11 1.3E-15 93.6 8.5 82 124-209 36-131 (218)
80 TIGR00537 hemK_rel_arch HemK-r 99.2 1.3E-10 2.7E-15 89.2 10.0 79 125-209 19-97 (179)
81 PRK13943 protein-L-isoaspartat 99.2 1.2E-10 2.6E-15 96.9 10.1 84 124-209 79-164 (322)
82 COG4123 Predicted O-methyltran 99.2 6.5E-11 1.4E-15 94.0 7.6 78 125-203 44-124 (248)
83 PRK00377 cbiT cobalt-precorrin 99.2 2.2E-10 4.7E-15 89.3 10.3 83 119-202 33-119 (198)
84 PRK15001 SAM-dependent 23S rib 99.2 1.4E-10 3E-15 98.3 9.8 89 118-207 220-311 (378)
85 TIGR00406 prmA ribosomal prote 99.2 1.7E-10 3.6E-15 95.0 9.9 85 119-206 153-237 (288)
86 TIGR02716 C20_methyl_CrtF C-20 99.2 2.3E-10 5.1E-15 95.0 9.9 89 118-210 141-231 (306)
87 COG2518 Pcm Protein-L-isoaspar 99.2 3E-10 6.5E-15 87.8 9.7 91 117-210 63-154 (209)
88 TIGR03533 L3_gln_methyl protei 99.2 1.9E-10 4.2E-15 94.4 9.1 75 125-201 121-196 (284)
89 COG2263 Predicted RNA methylas 99.1 5.2E-10 1.1E-14 84.6 10.3 73 124-202 44-116 (198)
90 PRK14966 unknown domain/N5-glu 99.1 3.6E-10 7.9E-15 96.2 10.2 83 116-202 243-327 (423)
91 PRK14967 putative methyltransf 99.1 3.6E-10 7.8E-15 89.7 9.7 74 125-202 36-109 (223)
92 TIGR00536 hemK_fam HemK family 99.1 6.6E-10 1.4E-14 91.3 10.7 73 127-201 116-189 (284)
93 PRK03522 rumB 23S rRNA methylu 99.1 3.9E-10 8.5E-15 94.0 9.4 74 125-201 173-247 (315)
94 PRK11805 N5-glutamine S-adenos 99.1 5.9E-10 1.3E-14 92.4 10.2 73 127-201 135-208 (307)
95 TIGR01177 conserved hypothetic 99.1 5.5E-10 1.2E-14 93.7 9.8 75 124-201 181-255 (329)
96 PRK09489 rsmC 16S ribosomal RN 99.1 7.8E-10 1.7E-14 93.0 10.3 85 118-207 188-274 (342)
97 COG4976 Predicted methyltransf 99.1 2.7E-11 5.9E-16 93.9 1.2 94 113-214 112-208 (287)
98 COG2242 CobL Precorrin-6B meth 99.1 1E-09 2.3E-14 83.1 9.8 94 114-210 22-117 (187)
99 PRK13168 rumA 23S rRNA m(5)U19 99.1 6.1E-10 1.3E-14 97.0 9.7 85 114-201 285-374 (443)
100 PRK14896 ksgA 16S ribosomal RN 99.1 7.2E-10 1.6E-14 89.9 9.4 81 117-204 20-101 (258)
101 PRK14968 putative methyltransf 99.1 1.4E-09 3.1E-14 83.6 10.3 79 125-205 23-101 (188)
102 PRK11188 rrmJ 23S rRNA methylt 99.1 7E-10 1.5E-14 87.1 8.7 73 124-209 50-132 (209)
103 PF06325 PrmA: Ribosomal prote 99.1 1.1E-09 2.3E-14 89.9 9.8 82 117-203 153-234 (295)
104 COG2264 PrmA Ribosomal protein 99.1 6E-10 1.3E-14 90.8 8.2 83 118-202 155-237 (300)
105 PHA03411 putative methyltransf 99.0 7E-10 1.5E-14 89.5 7.7 77 125-209 64-141 (279)
106 PRK07402 precorrin-6B methylas 99.0 2.6E-09 5.6E-14 83.1 10.5 81 118-200 32-115 (196)
107 KOG3010 Methyltransferase [Gen 99.0 9.8E-11 2.1E-15 91.5 2.4 81 127-209 35-115 (261)
108 PRK00274 ksgA 16S ribosomal RN 99.0 9.6E-10 2.1E-14 89.8 8.3 80 117-202 33-113 (272)
109 TIGR03438 probable methyltrans 99.0 2.1E-09 4.7E-14 89.0 10.5 96 112-209 51-153 (301)
110 PRK00517 prmA ribosomal protei 99.0 1.1E-09 2.4E-14 88.4 8.5 73 124-205 118-190 (250)
111 cd02440 AdoMet_MTases S-adenos 99.0 1.2E-09 2.6E-14 74.6 7.5 84 128-213 1-86 (107)
112 PRK13256 thiopurine S-methyltr 99.0 9.1E-10 2E-14 87.0 7.5 86 124-210 42-140 (226)
113 PTZ00338 dimethyladenosine tra 99.0 1.7E-09 3.8E-14 89.0 9.2 86 118-208 28-114 (294)
114 PRK10909 rsmD 16S rRNA m(2)G96 99.0 2.4E-09 5.2E-14 83.3 9.5 76 125-202 53-129 (199)
115 KOG2940 Predicted methyltransf 99.0 6.8E-10 1.5E-14 86.2 5.9 85 125-213 72-156 (325)
116 PRK01544 bifunctional N5-gluta 99.0 2E-09 4.3E-14 95.0 8.5 75 126-202 139-214 (506)
117 PHA03412 putative methyltransf 99.0 1.2E-09 2.6E-14 86.3 6.3 73 125-205 49-125 (241)
118 PRK09328 N5-glutamine S-adenos 99.0 6E-09 1.3E-13 85.1 10.6 76 124-202 107-183 (275)
119 PF05185 PRMT5: PRMT5 arginine 99.0 1.3E-08 2.8E-13 88.3 12.8 115 86-203 143-267 (448)
120 COG2813 RsmC 16S RNA G1207 met 99.0 5.3E-09 1.1E-13 85.0 9.6 90 116-209 148-239 (300)
121 COG2890 HemK Methylase of poly 99.0 5.5E-09 1.2E-13 85.5 9.8 71 128-202 113-184 (280)
122 KOG1500 Protein arginine N-met 98.9 8.4E-09 1.8E-13 84.4 10.5 88 112-202 163-251 (517)
123 PLN02781 Probable caffeoyl-CoA 98.9 8E-09 1.7E-13 82.5 9.6 85 114-201 59-151 (234)
124 PLN02232 ubiquinone biosynthes 98.9 1.6E-09 3.4E-14 81.7 5.0 65 152-216 1-66 (160)
125 PRK04266 fibrillarin; Provisio 98.9 7.4E-09 1.6E-13 82.2 8.7 73 124-201 71-148 (226)
126 TIGR00479 rumA 23S rRNA (uraci 98.9 6.9E-09 1.5E-13 90.2 9.1 80 118-200 284-368 (431)
127 PF02390 Methyltransf_4: Putat 98.9 1.2E-08 2.5E-13 79.3 9.3 76 125-202 17-96 (195)
128 PRK11727 23S rRNA mA1618 methy 98.9 1.4E-08 3.1E-13 84.3 10.4 80 125-205 114-200 (321)
129 KOG3420 Predicted RNA methylas 98.9 4.5E-09 9.7E-14 76.1 6.2 78 124-204 47-124 (185)
130 PRK14904 16S rRNA methyltransf 98.9 1.3E-08 2.9E-13 88.7 10.2 74 124-200 249-324 (445)
131 PRK15128 23S rRNA m(5)C1962 me 98.9 9.6E-09 2.1E-13 88.0 9.1 77 125-201 220-300 (396)
132 TIGR03704 PrmC_rel_meth putati 98.9 2.1E-08 4.6E-13 80.9 10.0 72 126-202 87-161 (251)
133 TIGR00755 ksgA dimethyladenosi 98.9 1.3E-08 2.9E-13 82.2 8.8 80 117-203 20-103 (253)
134 TIGR02085 meth_trns_rumB 23S r 98.9 1.8E-08 3.9E-13 85.9 9.8 74 125-201 233-307 (374)
135 PRK14901 16S rRNA methyltransf 98.8 2.2E-08 4.8E-13 87.0 10.4 75 124-200 251-331 (434)
136 PRK14903 16S rRNA methyltransf 98.8 1.7E-08 3.7E-13 87.5 9.6 75 124-200 236-313 (431)
137 TIGR00446 nop2p NOL1/NOP2/sun 98.8 1.3E-08 2.8E-13 82.8 8.3 75 124-200 70-146 (264)
138 PRK04457 spermidine synthase; 98.8 1.4E-08 3.1E-13 82.4 8.2 76 125-201 66-143 (262)
139 PRK11783 rlmL 23S rRNA m(2)G24 98.8 1.9E-08 4.1E-13 92.2 9.4 77 125-201 538-615 (702)
140 PRK10901 16S rRNA methyltransf 98.8 3.2E-08 6.9E-13 85.9 10.3 74 124-200 243-319 (427)
141 PF01596 Methyltransf_3: O-met 98.8 4.8E-08 1E-12 76.4 9.7 89 111-202 33-129 (205)
142 PF03291 Pox_MCEL: mRNA cappin 98.8 3.3E-08 7.2E-13 82.6 9.3 86 125-211 62-162 (331)
143 PRK14902 16S rRNA methyltransf 98.8 5.6E-08 1.2E-12 84.8 10.7 75 124-201 249-327 (444)
144 PF05724 TPMT: Thiopurine S-me 98.8 2.4E-08 5.3E-13 78.8 7.0 94 115-209 26-131 (218)
145 PLN02476 O-methyltransferase 98.8 6.3E-08 1.4E-12 78.8 9.5 76 125-201 118-201 (278)
146 PF01170 UPF0020: Putative RNA 98.7 6.4E-08 1.4E-12 74.2 9.0 78 124-202 27-114 (179)
147 TIGR00478 tly hemolysin TlyA f 98.7 4.5E-08 9.7E-13 77.6 8.2 84 124-215 74-163 (228)
148 PRK00811 spermidine synthase; 98.7 5.4E-08 1.2E-12 79.9 9.0 79 124-202 75-158 (283)
149 PTZ00146 fibrillarin; Provisio 98.7 4.9E-08 1.1E-12 79.7 8.0 76 124-203 131-211 (293)
150 PRK04148 hypothetical protein; 98.7 4.5E-08 9.7E-13 70.9 6.7 71 125-205 16-88 (134)
151 PLN02672 methionine S-methyltr 98.7 4.4E-08 9.4E-13 92.3 8.4 77 125-202 118-211 (1082)
152 TIGR00563 rsmB ribosomal RNA s 98.7 8.9E-08 1.9E-12 83.1 9.8 85 124-209 237-330 (426)
153 TIGR00438 rrmJ cell division p 98.7 6.2E-08 1.3E-12 74.8 7.7 67 124-203 31-107 (188)
154 TIGR00095 RNA methyltransferas 98.7 1.5E-07 3.2E-12 72.8 9.7 75 125-200 49-127 (189)
155 KOG2904 Predicted methyltransf 98.7 2E-07 4.3E-12 74.5 9.7 90 112-202 131-230 (328)
156 COG4122 Predicted O-methyltran 98.7 1.8E-07 4E-12 73.4 9.3 88 111-201 47-139 (219)
157 KOG2361 Predicted methyltransf 98.7 7E-08 1.5E-12 75.7 6.6 79 127-208 73-158 (264)
158 PF00891 Methyltransf_2: O-met 98.7 1.9E-07 4.1E-12 74.9 9.5 76 124-211 99-175 (241)
159 PRK00050 16S rRNA m(4)C1402 me 98.6 1E-07 2.2E-12 78.3 7.7 93 117-213 10-111 (296)
160 PF02475 Met_10: Met-10+ like- 98.6 2.3E-07 5.1E-12 72.1 8.9 77 125-203 101-178 (200)
161 TIGR02143 trmA_only tRNA (urac 98.6 1.5E-07 3.3E-12 79.6 8.0 60 126-188 198-257 (353)
162 PF08704 GCD14: tRNA methyltra 98.6 5.5E-07 1.2E-11 72.2 10.7 82 118-200 32-119 (247)
163 PLN02366 spermidine synthase 98.6 1.9E-07 4E-12 77.4 8.1 79 124-202 90-173 (308)
164 PRK05031 tRNA (uracil-5-)-meth 98.6 1.7E-07 3.7E-12 79.6 8.1 60 126-188 207-266 (362)
165 PRK03612 spermidine synthase; 98.6 1.3E-07 2.9E-12 83.9 7.6 79 125-203 297-382 (521)
166 KOG1975 mRNA cap methyltransfe 98.6 1.5E-07 3.2E-12 76.8 7.1 97 111-207 102-209 (389)
167 PLN02589 caffeoyl-CoA O-methyl 98.6 3E-07 6.4E-12 73.8 8.6 86 113-201 69-163 (247)
168 PF05891 Methyltransf_PK: AdoM 98.6 1.4E-07 2.9E-12 73.5 6.1 85 125-211 55-139 (218)
169 COG0220 Predicted S-adenosylme 98.6 2E-07 4.2E-12 73.9 6.9 76 126-203 49-128 (227)
170 PF10294 Methyltransf_16: Puta 98.6 3.6E-07 7.8E-12 69.7 8.0 84 124-209 44-134 (173)
171 COG2519 GCD14 tRNA(1-methylade 98.6 4.7E-07 1E-11 71.9 8.8 81 118-200 86-169 (256)
172 PRK01581 speE spermidine synth 98.6 2.7E-07 5.9E-12 77.4 7.9 79 124-202 149-234 (374)
173 KOG3191 Predicted N6-DNA-methy 98.6 1.3E-06 2.8E-11 65.9 10.6 74 125-202 43-118 (209)
174 PF05958 tRNA_U5-meth_tr: tRNA 98.5 7.6E-07 1.7E-11 75.4 10.3 73 113-188 184-256 (352)
175 COG0030 KsgA Dimethyladenosine 98.5 5.5E-07 1.2E-11 72.3 8.6 82 116-202 20-103 (259)
176 KOG1331 Predicted methyltransf 98.5 6.2E-08 1.3E-12 77.8 3.0 106 93-211 11-120 (293)
177 PF13679 Methyltransf_32: Meth 98.5 8.9E-07 1.9E-11 65.2 8.6 82 124-206 24-111 (141)
178 COG2265 TrmA SAM-dependent met 98.5 9E-07 2E-11 76.5 9.8 82 116-200 283-368 (432)
179 KOG0820 Ribosomal RNA adenine 98.5 7.9E-07 1.7E-11 71.0 8.4 85 114-202 46-131 (315)
180 TIGR00417 speE spermidine synt 98.5 1E-06 2.2E-11 71.9 9.0 79 125-203 72-154 (270)
181 PF09445 Methyltransf_15: RNA 98.4 3.6E-07 7.9E-12 68.5 5.1 71 128-200 2-75 (163)
182 COG1041 Predicted DNA modifica 98.4 8.6E-07 1.9E-11 73.6 7.2 74 124-200 196-270 (347)
183 PRK01544 bifunctional N5-gluta 98.4 8.7E-07 1.9E-11 78.4 7.2 78 124-203 346-426 (506)
184 COG3963 Phospholipid N-methylt 98.4 1.8E-06 4E-11 64.2 7.1 85 117-208 39-131 (194)
185 PF05219 DREV: DREV methyltran 98.4 7.9E-07 1.7E-11 70.9 5.5 80 125-216 94-173 (265)
186 KOG1661 Protein-L-isoaspartate 98.3 2.6E-06 5.7E-11 65.6 8.0 83 124-206 81-174 (237)
187 PF12147 Methyltransf_20: Puta 98.3 2.1E-05 4.6E-10 63.8 12.8 99 111-210 119-225 (311)
188 PRK04338 N(2),N(2)-dimethylgua 98.3 3.1E-06 6.6E-11 72.3 8.2 74 126-201 58-132 (382)
189 PF09243 Rsm22: Mitochondrial 98.3 8.3E-06 1.8E-10 66.7 9.8 94 113-209 20-117 (274)
190 COG1092 Predicted SAM-dependen 98.2 4.5E-06 9.7E-11 71.1 8.1 76 125-200 217-296 (393)
191 PF03602 Cons_hypoth95: Conser 98.2 3.8E-06 8.2E-11 64.6 6.7 75 125-200 42-120 (183)
192 PF06080 DUF938: Protein of un 98.2 6.1E-06 1.3E-10 63.9 7.7 82 126-209 26-117 (204)
193 PF01739 CheR: CheR methyltran 98.2 7.3E-06 1.6E-10 63.6 8.2 88 124-211 30-153 (196)
194 PF00398 RrnaAD: Ribosomal RNA 98.2 8.4E-06 1.8E-10 66.3 8.9 81 116-201 20-104 (262)
195 COG2520 Predicted methyltransf 98.2 6.6E-06 1.4E-10 68.7 7.6 88 115-204 179-266 (341)
196 PF10672 Methyltrans_SAM: S-ad 98.2 8.2E-06 1.8E-10 66.8 7.9 76 125-200 123-201 (286)
197 PF02527 GidB: rRNA small subu 98.2 3E-05 6.6E-10 59.6 10.5 75 126-203 49-124 (184)
198 KOG1269 SAM-dependent methyltr 98.2 2E-06 4.4E-11 72.6 4.2 92 124-216 109-200 (364)
199 PRK11783 rlmL 23S rRNA m(2)G24 98.1 9E-06 2E-10 74.8 8.6 77 125-202 190-311 (702)
200 COG0116 Predicted N6-adenine-s 98.1 1.2E-05 2.5E-10 67.8 8.1 92 108-202 176-307 (381)
201 PF05148 Methyltransf_8: Hypot 98.1 7.7E-06 1.7E-10 63.3 6.3 73 116-207 61-135 (219)
202 PF04816 DUF633: Family of unk 98.1 1.1E-05 2.3E-10 63.1 7.2 72 129-202 1-74 (205)
203 TIGR01444 fkbM_fam methyltrans 98.1 1.5E-05 3.3E-10 58.4 6.8 58 128-187 1-59 (143)
204 PF08123 DOT1: Histone methyla 98.1 7.4E-06 1.6E-10 64.0 5.3 89 116-204 32-132 (205)
205 KOG2899 Predicted methyltransf 98.1 1.2E-05 2.6E-10 63.4 6.3 45 124-168 57-102 (288)
206 KOG2187 tRNA uracil-5-methyltr 98.0 8.6E-06 1.9E-10 70.5 5.9 62 124-188 382-443 (534)
207 PLN02823 spermine synthase 98.0 2.5E-05 5.4E-10 65.6 8.4 77 125-201 103-183 (336)
208 PF02384 N6_Mtase: N-6 DNA Met 98.0 1.9E-05 4.2E-10 65.6 7.2 80 124-203 45-134 (311)
209 PF07091 FmrO: Ribosomal RNA m 98.0 4E-05 8.7E-10 61.0 8.3 81 125-209 105-186 (251)
210 KOG2352 Predicted spermine/spe 98.0 3.2E-05 6.8E-10 66.8 8.2 82 127-211 50-131 (482)
211 PRK10611 chemotaxis methyltran 98.0 7.7E-06 1.7E-10 67.1 4.1 85 125-210 115-239 (287)
212 KOG3045 Predicted RNA methylas 97.9 1.7E-05 3.6E-10 63.2 5.3 70 116-206 169-240 (325)
213 COG0357 GidB Predicted S-adeno 97.9 8.2E-05 1.8E-09 58.4 9.2 75 126-202 68-143 (215)
214 COG4076 Predicted RNA methylas 97.9 2.8E-05 6E-10 59.1 6.2 73 125-202 32-104 (252)
215 PF03141 Methyltransf_29: Puta 97.9 1.1E-05 2.4E-10 69.7 4.6 75 125-207 117-194 (506)
216 COG1352 CheR Methylase of chem 97.9 5.6E-05 1.2E-09 61.4 7.9 87 125-212 96-220 (268)
217 COG0742 N6-adenine-specific me 97.9 0.00018 3.9E-09 55.0 9.7 75 125-200 43-120 (187)
218 KOG2915 tRNA(1-methyladenosine 97.8 0.0002 4.3E-09 57.6 9.6 82 118-200 97-183 (314)
219 TIGR00006 S-adenosyl-methyltra 97.8 0.00015 3.2E-09 59.9 9.1 93 118-213 12-113 (305)
220 COG2384 Predicted SAM-dependen 97.8 0.00019 4.1E-09 56.0 9.1 83 118-202 10-93 (226)
221 PRK11933 yebU rRNA (cytosine-C 97.8 0.00012 2.6E-09 64.1 8.6 75 124-200 112-189 (470)
222 TIGR00308 TRM1 tRNA(guanine-26 97.7 0.0001 2.2E-09 62.8 6.9 73 126-200 45-120 (374)
223 COG0500 SmtA SAM-dependent met 97.7 0.0002 4.2E-09 51.9 7.5 76 129-207 52-132 (257)
224 COG3897 Predicted methyltransf 97.7 5.1E-05 1.1E-09 58.0 4.3 79 125-209 79-157 (218)
225 PF05971 Methyltransf_10: Prot 97.6 0.00041 9E-09 57.1 9.2 82 126-208 103-191 (299)
226 PRK11760 putative 23S rRNA C24 97.6 0.00016 3.5E-09 60.2 6.6 70 124-203 210-279 (357)
227 COG0293 FtsJ 23S rRNA methylas 97.6 0.00029 6.3E-09 54.7 7.5 75 116-203 34-120 (205)
228 KOG4058 Uncharacterized conser 97.6 0.0002 4.3E-09 52.4 5.7 103 106-211 52-155 (199)
229 PF11968 DUF3321: Putative met 97.6 0.00014 3.1E-09 56.7 5.4 68 126-212 52-122 (219)
230 KOG1663 O-methyltransferase [S 97.6 0.00085 1.8E-08 52.7 9.4 86 112-200 62-155 (237)
231 COG2521 Predicted archaeal met 97.6 2.8E-05 6.1E-10 61.0 1.1 77 124-200 133-211 (287)
232 PF01564 Spermine_synth: Sperm 97.5 0.00051 1.1E-08 55.3 8.1 77 124-200 75-156 (246)
233 COG0421 SpeE Spermidine syntha 97.5 0.00056 1.2E-08 56.1 8.2 78 125-202 76-157 (282)
234 KOG2730 Methylase [General fun 97.5 6E-05 1.3E-09 58.7 2.2 74 125-200 94-171 (263)
235 TIGR03439 methyl_EasF probable 97.5 0.0013 2.9E-08 54.8 10.1 96 113-211 65-174 (319)
236 PRK00536 speE spermidine synth 97.5 0.00059 1.3E-08 55.3 7.7 74 124-201 71-146 (262)
237 KOG3178 Hydroxyindole-O-methyl 97.4 0.00059 1.3E-08 56.8 7.2 76 126-211 178-253 (342)
238 TIGR02987 met_A_Alw26 type II 97.4 0.00025 5.4E-09 63.3 5.3 76 125-202 31-120 (524)
239 PF03059 NAS: Nicotianamine sy 97.3 0.0019 4.2E-08 52.6 9.0 79 126-205 121-203 (276)
240 PF01728 FtsJ: FtsJ-like methy 97.2 0.00019 4E-09 55.0 2.2 68 125-205 23-102 (181)
241 KOG1501 Arginine N-methyltrans 97.2 0.00075 1.6E-08 57.7 5.6 58 125-183 66-123 (636)
242 COG0144 Sun tRNA and rRNA cyto 97.1 0.0058 1.3E-07 51.9 10.3 75 124-200 155-235 (355)
243 PF04672 Methyltransf_19: S-ad 96.9 0.0062 1.3E-07 49.3 8.5 82 126-210 69-166 (267)
244 COG4262 Predicted spermidine s 96.9 0.0027 5.8E-08 53.3 6.3 77 125-201 289-372 (508)
245 KOG3987 Uncharacterized conser 96.8 9E-05 1.9E-09 57.2 -2.6 78 125-214 112-189 (288)
246 PF01795 Methyltransf_5: MraW 96.8 0.0018 4E-08 53.6 4.8 93 118-213 12-114 (310)
247 PRK10742 putative methyltransf 96.8 0.0075 1.6E-07 48.3 8.1 78 128-206 91-176 (250)
248 PHA01634 hypothetical protein 96.8 0.011 2.3E-07 42.4 7.8 49 124-172 27-75 (156)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.8 0.0067 1.5E-07 49.9 7.9 75 124-200 84-162 (283)
250 PF07942 N2227: N2227-like pro 96.8 0.01 2.3E-07 48.2 8.6 85 125-210 56-181 (270)
251 KOG3115 Methyltransferase-like 96.8 0.0061 1.3E-07 47.2 6.8 63 125-187 60-128 (249)
252 COG0275 Predicted S-adenosylme 96.8 0.013 2.8E-07 48.1 8.9 87 116-205 13-107 (314)
253 PF01269 Fibrillarin: Fibrilla 96.7 0.0063 1.4E-07 47.8 6.9 74 124-201 72-150 (229)
254 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.7 0.01 2.2E-07 48.0 8.0 85 124-208 55-172 (256)
255 PLN02668 indole-3-acetate carb 96.7 0.043 9.4E-07 47.0 11.9 90 125-214 63-182 (386)
256 PF03492 Methyltransf_7: SAM d 96.6 0.009 1.9E-07 50.3 7.7 86 124-211 15-124 (334)
257 COG3129 Predicted SAM-dependen 96.5 0.012 2.6E-07 46.4 7.1 85 124-209 77-168 (292)
258 COG1189 Predicted rRNA methyla 96.4 0.014 3E-07 46.4 7.0 76 124-207 78-157 (245)
259 PF02636 Methyltransf_28: Puta 96.3 0.016 3.5E-07 46.7 7.2 77 126-208 19-109 (252)
260 KOG0822 Protein kinase inhibit 96.2 0.024 5.1E-07 49.9 7.9 102 99-202 337-447 (649)
261 KOG2651 rRNA adenine N-6-methy 96.1 0.025 5.5E-07 47.8 7.2 55 111-167 141-195 (476)
262 COG1565 Uncharacterized conser 96.1 0.037 8E-07 46.6 8.0 65 107-171 58-132 (370)
263 PF13578 Methyltransf_24: Meth 96.0 0.0021 4.5E-08 44.5 0.2 70 130-201 1-76 (106)
264 KOG2671 Putative RNA methylase 95.8 0.012 2.5E-07 49.1 4.1 76 124-200 207-290 (421)
265 PTZ00357 methyltransferase; Pr 95.8 0.11 2.4E-06 47.4 10.2 75 127-201 702-799 (1072)
266 PF01861 DUF43: Protein of unk 95.7 0.14 3.1E-06 40.8 9.4 74 124-200 43-118 (243)
267 KOG1709 Guanidinoacetate methy 95.7 0.058 1.3E-06 42.3 7.0 73 124-200 100-175 (271)
268 PF07757 AdoMet_MTase: Predict 95.6 0.015 3.4E-07 40.3 3.3 32 125-157 58-89 (112)
269 cd00315 Cyt_C5_DNA_methylase C 95.5 0.042 9E-07 45.0 6.1 70 128-205 2-73 (275)
270 PRK11524 putative methyltransf 95.4 0.059 1.3E-06 44.3 7.0 57 113-170 196-252 (284)
271 KOG4589 Cell division protein 95.4 0.031 6.8E-07 42.8 4.6 67 124-203 68-145 (232)
272 PF01555 N6_N4_Mtase: DNA meth 95.4 0.044 9.4E-07 42.9 5.8 53 113-166 179-231 (231)
273 PRK13699 putative methylase; P 95.3 0.081 1.7E-06 42.1 7.1 58 113-171 151-208 (227)
274 COG1889 NOP1 Fibrillarin-like 95.2 0.097 2.1E-06 40.6 6.9 73 124-200 75-151 (231)
275 KOG1122 tRNA and rRNA cytosine 95.2 0.093 2E-06 45.0 7.3 74 124-200 240-318 (460)
276 PF02005 TRM: N2,N2-dimethylgu 95.0 0.11 2.3E-06 44.6 7.5 75 125-199 49-126 (377)
277 PF04445 SAM_MT: Putative SAM- 95.0 0.065 1.4E-06 42.7 5.7 79 127-206 77-163 (234)
278 PF06962 rRNA_methylase: Putat 94.9 0.094 2E-06 38.4 5.7 53 150-203 1-55 (140)
279 COG0286 HsdM Type I restrictio 94.5 0.14 3E-06 45.5 7.0 87 116-203 176-273 (489)
280 KOG2793 Putative N2,N2-dimethy 94.4 0.14 3.1E-06 41.1 6.2 87 125-212 86-180 (248)
281 PF11599 AviRa: RRNA methyltra 93.9 0.099 2.1E-06 41.0 4.3 45 124-168 50-97 (246)
282 PF04989 CmcI: Cephalosporin h 93.7 0.11 2.5E-06 40.5 4.4 61 125-188 32-97 (206)
283 KOG1227 Putative methyltransfe 92.6 0.083 1.8E-06 43.4 2.2 49 125-173 194-243 (351)
284 COG1064 AdhP Zn-dependent alco 92.0 0.54 1.2E-05 39.6 6.4 72 124-203 165-238 (339)
285 KOG2920 Predicted methyltransf 91.8 0.13 2.8E-06 41.9 2.5 42 121-162 112-153 (282)
286 KOG3924 Putative protein methy 91.7 0.5 1.1E-05 40.4 5.8 101 105-205 171-283 (419)
287 KOG3201 Uncharacterized conser 91.6 0.13 2.8E-06 38.6 2.1 81 125-205 29-114 (201)
288 COG1867 TRM1 N2,N2-dimethylgua 91.5 0.5 1.1E-05 40.0 5.6 71 126-198 53-125 (380)
289 PF00145 DNA_methylase: C-5 cy 90.2 0.54 1.2E-05 38.9 4.8 66 128-203 2-70 (335)
290 KOG2539 Mitochondrial/chloropl 89.8 0.39 8.4E-06 41.9 3.6 85 124-213 199-293 (491)
291 KOG1562 Spermidine synthase [A 88.8 1.3 2.7E-05 36.7 5.6 77 124-200 120-201 (337)
292 KOG1596 Fibrillarin and relate 88.4 1.4 3E-05 35.4 5.5 55 124-186 155-215 (317)
293 PF02254 TrkA_N: TrkA-N domain 88.3 0.85 1.9E-05 31.7 4.1 60 134-202 4-70 (116)
294 TIGR00675 dcm DNA-methyltransf 87.9 0.85 1.9E-05 38.1 4.4 67 129-203 1-68 (315)
295 PF05206 TRM13: Methyltransfer 87.9 1.7 3.6E-05 35.3 5.9 64 124-189 17-86 (259)
296 COG3510 CmcI Cephalosporin hyd 87.4 1.7 3.7E-05 33.6 5.3 57 125-188 69-130 (237)
297 KOG2078 tRNA modification enzy 87.3 0.55 1.2E-05 40.6 2.9 63 124-187 248-310 (495)
298 COG5459 Predicted rRNA methyla 86.6 2.6 5.6E-05 35.8 6.3 80 124-206 112-197 (484)
299 PF03514 GRAS: GRAS domain fam 86.3 5.2 0.00011 34.3 8.4 89 118-209 102-215 (374)
300 KOG1098 Putative SAM-dependent 85.7 2.2 4.7E-05 38.8 5.8 35 124-158 43-79 (780)
301 PF05050 Methyltransf_21: Meth 85.1 1.7 3.7E-05 31.9 4.4 37 131-167 1-42 (167)
302 PF03141 Methyltransf_29: Puta 83.8 2.2 4.7E-05 37.8 4.9 77 124-209 364-442 (506)
303 PF11899 DUF3419: Protein of u 83.1 4.1 8.9E-05 35.1 6.3 44 124-168 34-77 (380)
304 PF04072 LCM: Leucine carboxyl 82.4 8.9 0.00019 29.2 7.4 84 125-209 77-172 (183)
305 PRK07904 short chain dehydroge 82.0 9.4 0.0002 30.5 7.8 78 124-204 6-97 (253)
306 COG1568 Predicted methyltransf 81.8 4.5 9.7E-05 33.2 5.7 72 125-200 152-227 (354)
307 COG0270 Dcm Site-specific DNA 81.7 5.8 0.00013 33.3 6.7 73 126-205 3-78 (328)
308 TIGR00497 hsdM type I restrict 81.7 7.4 0.00016 34.8 7.7 78 125-202 217-301 (501)
309 COG1086 Predicted nucleoside-d 81.4 14 0.00031 33.4 9.1 83 125-209 249-340 (588)
310 KOG2912 Predicted DNA methylas 80.6 2.7 5.8E-05 35.2 4.0 73 129-202 106-186 (419)
311 PF03686 UPF0146: Uncharacteri 80.4 3.7 8E-05 29.5 4.3 66 125-203 13-79 (127)
312 COG1255 Uncharacterized protei 79.3 3.5 7.5E-05 29.1 3.7 64 125-201 13-77 (129)
313 PRK09424 pntA NAD(P) transhydr 79.2 7.1 0.00015 35.0 6.6 43 125-167 164-207 (509)
314 cd08283 FDH_like_1 Glutathione 79.0 3.1 6.8E-05 35.5 4.3 44 124-167 183-228 (386)
315 PF07279 DUF1442: Protein of u 78.1 21 0.00045 28.2 8.1 76 125-201 41-122 (218)
316 PF00106 adh_short: short chai 78.0 9 0.0002 28.0 6.1 75 128-206 2-92 (167)
317 PF12692 Methyltransf_17: S-ad 77.7 11 0.00024 27.9 6.1 43 115-157 18-61 (160)
318 PRK05867 short chain dehydroge 77.5 13 0.00029 29.3 7.4 78 125-206 8-98 (253)
319 PRK03659 glutathione-regulated 77.0 4.5 9.8E-05 37.0 4.9 59 134-201 406-471 (601)
320 PRK05650 short chain dehydroge 76.9 15 0.00032 29.4 7.5 75 128-206 2-89 (270)
321 cd08254 hydroxyacyl_CoA_DH 6-h 76.9 9.9 0.00022 31.3 6.7 43 124-166 164-207 (338)
322 PF02719 Polysacc_synt_2: Poly 76.2 5.3 0.00012 33.1 4.6 76 133-209 4-92 (293)
323 PRK09496 trkA potassium transp 76.1 6.7 0.00015 34.2 5.6 68 125-201 230-304 (453)
324 KOG0024 Sorbitol dehydrogenase 75.9 4.9 0.00011 33.7 4.3 43 124-166 168-212 (354)
325 PRK10458 DNA cytosine methylas 75.8 10 0.00022 33.7 6.5 60 126-189 88-147 (467)
326 KOG1253 tRNA methyltransferase 75.4 1.1 2.4E-05 39.4 0.5 75 124-199 108-188 (525)
327 PRK06124 gluconate 5-dehydroge 75.4 18 0.0004 28.5 7.6 76 125-204 10-98 (256)
328 PRK09291 short chain dehydroge 75.3 19 0.00042 28.3 7.7 74 127-204 3-83 (257)
329 KOG2872 Uroporphyrinogen decar 75.1 16 0.00036 30.1 7.0 37 128-165 253-289 (359)
330 PRK10669 putative cation:proto 74.7 5.8 0.00013 35.9 4.9 58 134-200 423-487 (558)
331 PRK07454 short chain dehydroge 74.1 22 0.00048 27.7 7.8 77 125-205 5-94 (241)
332 COG4301 Uncharacterized conser 73.5 27 0.00059 28.4 7.7 61 125-186 78-143 (321)
333 PLN03209 translocon at the inn 72.5 18 0.00039 33.0 7.4 79 125-204 79-169 (576)
334 PRK13394 3-hydroxybutyrate deh 72.2 19 0.00042 28.4 7.1 78 125-206 6-96 (262)
335 PRK08267 short chain dehydroge 72.0 18 0.00038 28.7 6.8 72 128-205 3-88 (260)
336 PRK08703 short chain dehydroge 71.7 29 0.00063 27.1 7.9 77 125-204 5-97 (239)
337 PRK06139 short chain dehydroge 71.4 13 0.00028 31.2 6.1 77 125-205 6-95 (330)
338 PRK03562 glutathione-regulated 71.2 7.3 0.00016 35.8 4.8 67 126-201 400-471 (621)
339 PRK07523 gluconate 5-dehydroge 70.8 25 0.00055 27.7 7.4 77 125-205 9-98 (255)
340 PRK07097 gluconate 5-dehydroge 70.7 22 0.00047 28.4 7.0 77 125-205 9-98 (265)
341 COG0863 DNA modification methy 70.3 19 0.00042 29.3 6.8 53 118-171 215-267 (302)
342 KOG0821 Predicted ribosomal RN 70.0 13 0.00028 29.7 5.2 61 124-187 49-109 (326)
343 PRK07326 short chain dehydroge 69.9 27 0.00059 27.1 7.3 76 125-205 5-93 (237)
344 PRK06194 hypothetical protein; 69.7 24 0.00053 28.4 7.2 78 125-206 5-95 (287)
345 PRK09880 L-idonate 5-dehydroge 69.6 10 0.00023 31.7 5.1 42 125-166 169-212 (343)
346 PRK06949 short chain dehydroge 68.9 31 0.00067 27.1 7.5 77 125-205 8-97 (258)
347 KOG2811 Uncharacterized conser 68.9 6.6 0.00014 33.5 3.6 61 125-188 182-246 (420)
348 PRK07814 short chain dehydroge 68.4 34 0.00073 27.2 7.7 76 125-204 9-97 (263)
349 PRK06172 short chain dehydroge 68.3 33 0.00072 26.9 7.6 76 125-204 6-94 (253)
350 TIGR02622 CDP_4_6_dhtase CDP-g 68.1 17 0.00037 30.4 6.1 75 125-204 3-85 (349)
351 PRK07890 short chain dehydroge 68.1 31 0.00066 27.2 7.4 76 125-204 4-92 (258)
352 PRK06914 short chain dehydroge 68.0 35 0.00075 27.3 7.8 78 126-205 3-92 (280)
353 PRK07666 fabG 3-ketoacyl-(acyl 67.6 35 0.00076 26.5 7.6 77 125-205 6-95 (239)
354 PRK08213 gluconate 5-dehydroge 67.5 34 0.00073 27.0 7.5 76 125-204 11-99 (259)
355 PRK12826 3-ketoacyl-(acyl-carr 67.4 34 0.00074 26.6 7.5 78 125-206 5-95 (251)
356 PRK09496 trkA potassium transp 67.0 16 0.00034 31.9 5.9 64 128-201 2-72 (453)
357 PRK07453 protochlorophyllide o 66.9 25 0.00053 29.1 6.8 77 125-205 5-94 (322)
358 PRK08226 short chain dehydroge 66.8 35 0.00076 27.0 7.5 77 125-206 5-94 (263)
359 PF01488 Shikimate_DH: Shikima 66.7 13 0.00029 26.6 4.6 75 125-206 11-87 (135)
360 KOG1209 1-Acyl dihydroxyaceton 66.6 36 0.00078 27.2 7.0 72 125-205 6-92 (289)
361 PLN02662 cinnamyl-alcohol dehy 66.6 20 0.00044 29.3 6.2 77 125-203 3-85 (322)
362 PRK05854 short chain dehydroge 66.5 46 0.001 27.5 8.3 80 125-206 13-105 (313)
363 COG4017 Uncharacterized protei 66.0 25 0.00055 27.4 5.9 69 124-207 43-112 (254)
364 PRK12429 3-hydroxybutyrate deh 65.9 40 0.00086 26.4 7.6 79 125-207 3-94 (258)
365 PRK07063 short chain dehydroge 65.7 40 0.00087 26.6 7.6 79 125-205 6-97 (260)
366 TIGR03206 benzo_BadH 2-hydroxy 65.2 44 0.00095 26.1 7.7 76 125-204 2-90 (250)
367 TIGR00561 pntA NAD(P) transhyd 65.2 12 0.00025 33.7 4.6 42 125-166 163-205 (511)
368 cd05188 MDR Medium chain reduc 65.1 13 0.00028 29.2 4.6 43 124-166 133-176 (271)
369 KOG2782 Putative SAM dependent 64.6 6.4 0.00014 31.2 2.5 82 124-207 42-131 (303)
370 PRK12939 short chain dehydroge 64.5 39 0.00085 26.3 7.3 76 125-204 6-94 (250)
371 PRK07677 short chain dehydroge 64.5 30 0.00065 27.3 6.6 74 127-204 2-88 (252)
372 COG5379 BtaA S-adenosylmethion 64.5 27 0.00059 29.1 6.2 44 124-168 62-105 (414)
373 PLN02989 cinnamyl-alcohol dehy 64.4 21 0.00045 29.5 5.9 79 125-205 4-88 (325)
374 PRK08217 fabG 3-ketoacyl-(acyl 64.4 28 0.0006 27.2 6.4 76 125-204 4-92 (253)
375 cd08232 idonate-5-DH L-idonate 64.2 24 0.00052 29.2 6.2 42 125-166 165-208 (339)
376 KOG1201 Hydroxysteroid 17-beta 64.0 36 0.00078 28.3 6.9 81 124-209 36-129 (300)
377 PRK05786 fabG 3-ketoacyl-(acyl 63.4 46 0.00099 25.8 7.4 74 125-203 4-90 (238)
378 PRK06181 short chain dehydroge 63.4 43 0.00093 26.5 7.4 76 127-206 2-90 (263)
379 COG4798 Predicted methyltransf 63.3 19 0.00042 28.1 4.9 76 124-202 47-130 (238)
380 PRK05855 short chain dehydroge 63.2 47 0.001 29.6 8.3 78 125-206 314-404 (582)
381 PRK07102 short chain dehydroge 63.0 42 0.0009 26.2 7.2 74 127-203 2-85 (243)
382 PRK15181 Vi polysaccharide bio 62.9 32 0.0007 28.8 6.8 78 125-205 14-101 (348)
383 COG0569 TrkA K+ transport syst 62.7 30 0.00066 27.3 6.2 65 128-201 2-73 (225)
384 PRK08643 acetoin reductase; Va 62.4 47 0.001 26.1 7.5 74 127-204 3-89 (256)
385 PRK01438 murD UDP-N-acetylmura 62.3 39 0.00085 29.8 7.5 73 125-205 15-89 (480)
386 cd01065 NAD_bind_Shikimate_DH 62.2 46 0.001 24.0 6.9 41 125-167 18-62 (155)
387 PRK06196 oxidoreductase; Provi 62.2 35 0.00075 28.1 6.8 73 125-205 25-110 (315)
388 TIGR02356 adenyl_thiF thiazole 62.0 31 0.00067 26.7 6.1 33 125-157 20-54 (202)
389 PRK07231 fabG 3-ketoacyl-(acyl 61.8 44 0.00096 26.0 7.2 75 125-204 4-91 (251)
390 KOG1371 UDP-glucose 4-epimeras 61.8 29 0.00063 29.2 6.0 80 126-206 2-89 (343)
391 PRK05866 short chain dehydroge 61.2 50 0.0011 27.0 7.5 77 125-205 39-128 (293)
392 PF03721 UDPG_MGDP_dh_N: UDP-g 61.0 9.3 0.0002 29.3 2.9 31 135-165 7-40 (185)
393 COG1063 Tdh Threonine dehydrog 60.2 17 0.00038 30.7 4.7 43 125-167 168-212 (350)
394 PRK06113 7-alpha-hydroxysteroi 60.0 57 0.0012 25.7 7.5 76 125-204 10-98 (255)
395 TIGR01963 PHB_DH 3-hydroxybuty 59.5 55 0.0012 25.6 7.3 74 128-205 3-89 (255)
396 COG1748 LYS9 Saccharopine dehy 59.5 28 0.00061 30.1 5.8 72 127-204 2-78 (389)
397 PF07101 DUF1363: Protein of u 59.2 3.7 8.1E-05 27.8 0.4 16 129-144 6-21 (124)
398 PRK07478 short chain dehydroge 59.2 56 0.0012 25.7 7.3 77 125-205 5-94 (254)
399 COG0407 HemE Uroporphyrinogen- 59.2 42 0.00092 28.6 6.7 74 106-188 220-295 (352)
400 PRK07576 short chain dehydroge 59.2 39 0.00085 26.9 6.5 76 125-204 8-96 (264)
401 PRK09072 short chain dehydroge 59.1 56 0.0012 25.9 7.4 77 125-206 4-92 (263)
402 PRK05876 short chain dehydroge 58.9 58 0.0013 26.2 7.5 77 125-205 5-94 (275)
403 PRK06720 hypothetical protein; 58.9 63 0.0014 24.2 7.1 78 125-206 15-105 (169)
404 PRK07035 short chain dehydroge 58.8 55 0.0012 25.6 7.2 76 125-204 7-95 (252)
405 PRK08945 putative oxoacyl-(acy 58.0 54 0.0012 25.6 7.0 77 125-204 11-102 (247)
406 PRK12829 short chain dehydroge 57.7 65 0.0014 25.3 7.5 74 125-204 10-96 (264)
407 PRK07774 short chain dehydroge 57.7 67 0.0015 25.0 7.5 76 125-204 5-93 (250)
408 PRK12481 2-deoxy-D-gluconate 3 57.7 52 0.0011 26.0 6.9 76 125-206 7-95 (251)
409 PRK08251 short chain dehydroge 57.5 68 0.0015 25.0 7.5 78 126-205 2-92 (248)
410 PRK15116 sulfur acceptor prote 56.9 1.1E+02 0.0023 25.1 9.1 38 118-157 24-63 (268)
411 PF02086 MethyltransfD12: D12 56.6 31 0.00066 27.5 5.4 54 116-170 10-64 (260)
412 PRK05653 fabG 3-ketoacyl-(acyl 56.4 69 0.0015 24.7 7.4 76 125-204 4-92 (246)
413 KOG4169 15-hydroxyprostaglandi 55.7 27 0.00059 28.0 4.7 88 125-215 4-104 (261)
414 PRK06940 short chain dehydroge 55.5 53 0.0011 26.5 6.7 73 128-205 4-87 (275)
415 PF02737 3HCDH_N: 3-hydroxyacy 55.0 21 0.00046 27.1 4.0 40 129-170 2-44 (180)
416 KOG2198 tRNA cytosine-5-methyl 55.0 66 0.0014 27.6 7.1 75 124-200 154-242 (375)
417 PRK12384 sorbitol-6-phosphate 54.9 74 0.0016 25.0 7.4 77 127-205 3-92 (259)
418 cd00401 AdoHcyase S-adenosyl-L 54.9 31 0.00068 30.1 5.4 43 124-166 200-243 (413)
419 PRK08644 thiamine biosynthesis 54.9 74 0.0016 24.9 7.1 33 125-157 27-61 (212)
420 PRK09548 PTS system ascorbate- 54.7 58 0.0012 29.9 7.1 61 125-205 505-565 (602)
421 PRK08277 D-mannonate oxidoredu 54.5 75 0.0016 25.4 7.4 76 125-204 9-97 (278)
422 PRK08862 short chain dehydroge 54.5 68 0.0015 25.1 7.0 75 125-203 4-92 (227)
423 TIGR03201 dearomat_had 6-hydro 54.4 23 0.00049 29.7 4.5 43 124-166 165-208 (349)
424 PRK06182 short chain dehydroge 54.3 57 0.0012 26.0 6.7 71 126-206 3-86 (273)
425 PLN02650 dihydroflavonol-4-red 54.1 45 0.00098 27.9 6.3 78 125-204 4-87 (351)
426 PRK05872 short chain dehydroge 54.1 55 0.0012 26.7 6.6 77 125-206 8-97 (296)
427 KOG2360 Proliferation-associat 53.8 38 0.00083 29.2 5.6 64 124-189 212-277 (413)
428 PRK09242 tropinone reductase; 53.8 54 0.0012 25.8 6.4 78 125-204 8-98 (257)
429 PRK10310 PTS system galactitol 53.6 41 0.00089 22.6 4.8 12 132-143 7-18 (94)
430 PRK08339 short chain dehydroge 53.6 81 0.0018 25.1 7.5 77 125-204 7-95 (263)
431 KOG1208 Dehydrogenases with di 52.9 65 0.0014 27.0 6.8 83 125-209 34-129 (314)
432 PRK07109 short chain dehydroge 52.8 82 0.0018 26.3 7.6 77 125-205 7-96 (334)
433 COG3640 CooC CO dehydrogenase 52.2 49 0.0011 26.7 5.6 74 111-186 118-196 (255)
434 cd08234 threonine_DH_like L-th 51.4 59 0.0013 26.7 6.5 43 124-166 158-202 (334)
435 KOG2798 Putative trehalase [Ca 51.4 15 0.00033 30.8 2.8 40 125-165 150-189 (369)
436 cd01492 Aos1_SUMO Ubiquitin ac 51.2 1E+02 0.0023 23.7 7.4 33 125-157 20-54 (197)
437 PLN02657 3,8-divinyl protochlo 50.7 31 0.00068 29.6 4.8 75 125-203 59-145 (390)
438 PRK07062 short chain dehydroge 50.0 92 0.002 24.6 7.3 79 125-205 7-98 (265)
439 PRK12548 shikimate 5-dehydroge 49.9 83 0.0018 25.8 7.0 78 125-207 125-212 (289)
440 PRK06197 short chain dehydroge 49.9 1.1E+02 0.0023 25.0 7.8 79 125-205 15-106 (306)
441 PLN02653 GDP-mannose 4,6-dehyd 49.3 35 0.00076 28.4 4.8 81 125-206 5-95 (340)
442 PRK03369 murD UDP-N-acetylmura 49.1 42 0.0009 29.9 5.5 70 125-205 11-81 (488)
443 TIGR01832 kduD 2-deoxy-D-gluco 49.1 74 0.0016 24.8 6.5 75 125-205 4-91 (248)
444 PRK07060 short chain dehydroge 49.0 69 0.0015 24.8 6.3 73 125-206 8-89 (245)
445 PRK09186 flagellin modificatio 48.8 82 0.0018 24.6 6.7 77 125-203 3-92 (256)
446 PRK05565 fabG 3-ketoacyl-(acyl 48.8 1.1E+02 0.0024 23.6 7.5 77 125-205 4-94 (247)
447 COG1087 GalE UDP-glucose 4-epi 48.6 26 0.00057 29.2 3.7 71 128-207 2-80 (329)
448 TIGR00027 mthyl_TIGR00027 meth 48.5 1.5E+02 0.0031 24.1 9.7 85 125-210 81-174 (260)
449 PRK06125 short chain dehydroge 48.5 79 0.0017 24.9 6.6 78 125-205 6-92 (259)
450 PF00107 ADH_zinc_N: Zinc-bind 47.8 13 0.00027 26.1 1.7 61 135-203 1-67 (130)
451 PRK08589 short chain dehydroge 47.6 1E+02 0.0023 24.6 7.2 76 125-205 5-93 (272)
452 KOG2352 Predicted spermine/spe 47.6 17 0.00037 32.2 2.6 44 125-168 295-339 (482)
453 PRK08085 gluconate 5-dehydroge 47.4 1.2E+02 0.0026 23.7 7.5 76 125-204 8-96 (254)
454 TIGR00518 alaDH alanine dehydr 47.3 24 0.00051 30.3 3.5 42 125-166 166-208 (370)
455 PRK14106 murD UDP-N-acetylmura 46.9 90 0.002 27.2 7.2 72 125-205 4-79 (450)
456 COG3320 Putative dehydrogenase 46.9 77 0.0017 27.3 6.4 82 133-214 6-107 (382)
457 COG2933 Predicted SAM-dependen 46.8 85 0.0018 25.9 6.3 68 125-202 211-278 (358)
458 PLN02427 UDP-apiose/xylose syn 46.8 53 0.0012 27.9 5.6 77 125-204 13-96 (386)
459 KOG1099 SAM-dependent methyltr 46.3 87 0.0019 25.3 6.1 65 126-203 42-124 (294)
460 PRK05875 short chain dehydroge 46.2 93 0.002 24.7 6.8 77 125-203 6-95 (276)
461 PRK12475 thiamine/molybdopteri 46.2 71 0.0015 27.0 6.2 34 125-158 23-58 (338)
462 cd05285 sorbitol_DH Sorbitol d 46.1 65 0.0014 26.7 6.0 43 124-166 161-205 (343)
463 TIGR02415 23BDH acetoin reduct 46.0 1.2E+02 0.0026 23.7 7.3 73 128-204 2-87 (254)
464 KOG3790 Uncharacterized conser 45.9 3 6.5E-05 36.2 -2.1 53 114-167 200-252 (529)
465 PRK06953 short chain dehydroge 45.6 1.1E+02 0.0024 23.4 7.0 68 128-205 3-81 (222)
466 PLN02819 lysine-ketoglutarate 45.4 36 0.00079 33.4 4.7 71 125-202 568-656 (1042)
467 PRK12748 3-ketoacyl-(acyl-carr 44.8 1.2E+02 0.0026 23.8 7.1 76 125-204 4-105 (256)
468 COG0300 DltE Short-chain dehyd 44.7 1.7E+02 0.0038 23.9 8.2 82 125-209 5-99 (265)
469 KOG0022 Alcohol dehydrogenase, 44.3 48 0.0011 28.0 4.6 44 124-167 191-236 (375)
470 PRK07688 thiamine/molybdopteri 44.2 77 0.0017 26.8 6.1 33 125-157 23-57 (339)
471 PRK06935 2-deoxy-D-gluconate 3 44.0 1.2E+02 0.0025 23.9 6.9 76 125-205 14-102 (258)
472 cd08245 CAD Cinnamyl alcohol d 43.8 42 0.00092 27.5 4.5 43 124-166 161-204 (330)
473 PRK08628 short chain dehydroge 43.7 1.3E+02 0.0027 23.6 7.1 75 125-204 6-93 (258)
474 PLN02240 UDP-glucose 4-epimera 43.7 92 0.002 25.8 6.5 76 125-204 4-91 (352)
475 cd05278 FDH_like Formaldehyde 43.6 63 0.0014 26.6 5.5 43 124-166 166-210 (347)
476 PRK06198 short chain dehydroge 43.6 1.3E+02 0.0028 23.6 7.1 77 125-205 5-95 (260)
477 PRK07806 short chain dehydroge 43.6 1E+02 0.0022 24.0 6.5 76 125-204 5-94 (248)
478 KOG0725 Reductases with broad 43.3 1E+02 0.0022 25.1 6.5 84 125-208 7-103 (270)
479 COG0686 Ald Alanine dehydrogen 43.3 42 0.00092 28.3 4.2 79 126-210 168-247 (371)
480 PRK08415 enoyl-(acyl carrier p 43.1 1.3E+02 0.0028 24.3 7.1 77 125-205 4-94 (274)
481 PLN02986 cinnamyl-alcohol dehy 42.4 93 0.002 25.5 6.3 78 125-204 4-87 (322)
482 PLN02253 xanthoxin dehydrogena 42.3 1.1E+02 0.0023 24.5 6.5 76 125-205 17-105 (280)
483 cd01487 E1_ThiF_like E1_ThiF_l 42.0 87 0.0019 23.6 5.6 31 128-158 1-33 (174)
484 cd00757 ThiF_MoeB_HesA_family 41.8 43 0.00093 26.4 4.0 76 125-202 20-119 (228)
485 PRK07775 short chain dehydroge 41.7 1.6E+02 0.0035 23.5 7.5 76 125-204 9-97 (274)
486 PLN02918 pyridoxine (pyridoxam 41.7 71 0.0015 29.0 5.7 13 127-140 136-148 (544)
487 TIGR03589 PseB UDP-N-acetylglu 41.1 1.5E+02 0.0033 24.5 7.4 77 125-207 3-87 (324)
488 PLN00016 RNA-binding protein; 41.1 37 0.0008 28.9 3.8 76 125-202 51-138 (378)
489 PRK05597 molybdopterin biosynt 41.1 77 0.0017 27.0 5.7 76 125-202 27-126 (355)
490 PRK10675 UDP-galactose-4-epime 40.9 99 0.0021 25.5 6.3 74 128-204 2-83 (338)
491 PRK07831 short chain dehydroge 40.9 1.4E+02 0.003 23.5 7.0 79 125-205 16-108 (262)
492 PRK05690 molybdopterin biosynt 40.9 1.4E+02 0.003 23.9 6.9 33 125-157 31-65 (245)
493 PRK07533 enoyl-(acyl carrier p 40.8 1.5E+02 0.0032 23.5 7.0 77 125-205 9-99 (258)
494 cd08255 2-desacetyl-2-hydroxye 40.7 48 0.001 26.4 4.2 44 124-167 96-141 (277)
495 PRK12827 short chain dehydroge 40.7 1.6E+02 0.0035 22.7 7.2 78 125-206 5-99 (249)
496 KOG1269 SAM-dependent methyltr 40.6 14 0.00031 31.6 1.1 77 125-201 180-258 (364)
497 PRK08340 glucose-1-dehydrogena 40.5 1.2E+02 0.0026 23.9 6.5 72 128-204 2-86 (259)
498 PLN02740 Alcohol dehydrogenase 40.4 46 0.001 28.3 4.3 43 124-166 197-241 (381)
499 KOG2918 Carboxymethyl transfer 40.3 1.4E+02 0.0031 25.1 6.7 51 113-164 76-129 (335)
500 PRK07024 short chain dehydroge 40.2 1.2E+02 0.0025 24.0 6.4 74 127-205 3-89 (257)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.86 E-value=4.9e-21 Score=151.35 Aligned_cols=104 Identities=28% Similarity=0.364 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC
Q 027860 112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 112 ~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp 189 (217)
..|++.+...+. .++.+|||||||||..+..+++ .+..+++|+|+|+.||+.|++++.+.++. +++|+++|+++||
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LP 114 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLP 114 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCC
Confidence 346666676665 5789999999999999999987 34679999999999999999999988874 4999999999999
Q ss_pred CCCCcccEEEeccccccccChhhhccCC
Q 027860 190 VSDASVDAVVGTLVLCSVKDVDMTLQGK 217 (217)
Q Consensus 190 ~~~~sfD~Vi~~~~l~~~~d~~~~L~e~ 217 (217)
|+|++||+|++.++|++++|++.+|+|+
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~ 142 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEM 142 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHH
Confidence 9999999999999999999999999984
No 2
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.84 E-value=2.7e-20 Score=151.97 Aligned_cols=150 Identities=22% Similarity=0.393 Sum_probs=110.5
Q ss_pred cccccCCchhhhhhhc--ccccccccCCCCCCCCCCCCchHHhhhcCCCchhhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 027860 41 KSCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQL 118 (217)
Q Consensus 41 ~~c~C~~~~~f~~a~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (217)
...+|.++|+||.+++ ++++|. +.+....+++..+|..+.+ .|++. ..|..........+
T Consensus 17 ~~~~C~~~h~fd~a~~Gy~~ll~~----~~~~~~~~~d~~~~~~ar~----~fl~~----------g~y~~l~~~i~~~l 78 (272)
T PRK11088 17 NSWICPQNHQFDCAKEGYVNLLPV----QHKRSKDPGDNKEMMQARR----AFLDA----------GHYQPLRDAVANLL 78 (272)
T ss_pred CEEEcCCCCCCccccCceEEeccc----cccCCCCCCcCHHHHHHHH----HHHHC----------CChHHHHHHHHHHH
Confidence 3588999999999998 888887 7777788889888888633 22221 12333122222222
Q ss_pred HHHhcCCCCeEEEECCCCCcchHHhhhC-C---CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc
Q 027860 119 FDNLRGKAKKVLEIGIGTGPNLKYYAAD-T---DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 119 ~~~l~~~~~~VLDiGcG~G~~~~~la~~-~---~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s 194 (217)
.+.+.....+|||||||+|.++..+++. + +..++|+|+|+.|++.|+++. +++.|.++|+..+|+++++
T Consensus 79 ~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~s 151 (272)
T PRK11088 79 AERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQS 151 (272)
T ss_pred HHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCc
Confidence 2333335578999999999999988753 2 247999999999999998762 5788999999999999999
Q ss_pred ccEEEeccccccccChhhhcc
Q 027860 195 VDAVVGTLVLCSVKDVDMTLQ 215 (217)
Q Consensus 195 fD~Vi~~~~l~~~~d~~~~L~ 215 (217)
||+|++.+....+.+..+.|+
T Consensus 152 fD~I~~~~~~~~~~e~~rvLk 172 (272)
T PRK11088 152 LDAIIRIYAPCKAEELARVVK 172 (272)
T ss_pred eeEEEEecCCCCHHHHHhhcc
Confidence 999999887766666666655
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.82 E-value=4e-20 Score=147.13 Aligned_cols=102 Identities=28% Similarity=0.412 Sum_probs=74.5
Q ss_pred HHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC
Q 027860 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 113 ~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp 189 (217)
.|++.+++.+. .++.+|||+|||||..+..+++. +..+|+|+|+|++|++.|+++....++ .+++|+++|++++|
T Consensus 34 ~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~--~~i~~v~~da~~lp 111 (233)
T PF01209_consen 34 RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL--QNIEFVQGDAEDLP 111 (233)
T ss_dssp ---SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--
T ss_pred HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC--CCeeEEEcCHHHhc
Confidence 34455555554 57889999999999999988863 456999999999999999999998886 48999999999999
Q ss_pred CCCCcccEEEeccccccccChhhhccC
Q 027860 190 VSDASVDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 190 ~~~~sfD~Vi~~~~l~~~~d~~~~L~e 216 (217)
+++++||+|++.+++++++|+.+.|+|
T Consensus 112 ~~d~sfD~v~~~fglrn~~d~~~~l~E 138 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPDRERALRE 138 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SSHHHHHHH
T ss_pred CCCCceeEEEHHhhHHhhCCHHHHHHH
Confidence 999999999999999999999999887
No 4
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.79 E-value=6.2e-19 Score=133.76 Aligned_cols=129 Identities=35% Similarity=0.480 Sum_probs=102.1
Q ss_pred HHhhhcCCCchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----hc-CCCCeEEEECCCCCcchHHhhhCCCCeEEE
Q 027860 79 AMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDN----LR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLG 153 (217)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~g 153 (217)
...++..+....|+...+...|...+..|. +.++.. +. .....|||||||||.+..++--.++..|++
T Consensus 32 ~n~~~~~~~~~~~p~~~ft~~yne~~~~yk-------relFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~ 104 (252)
T KOG4300|consen 32 LNYESRQKSDLLIPNSNFTSIYNEIADSYK-------RELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTC 104 (252)
T ss_pred HHHHhcCccccccchhHHHHHHHHHHHHHH-------HHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEE
Confidence 344555666667777777666655555554 444433 22 244568999999999999986568889999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCCCeE-EEeccccccC-CCCCcccEEEeccccccccChhhhccC
Q 027860 154 VDPNRKMEKYAQTAAVAAGLPLTNFK-FLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 154 iD~S~~~l~~a~~~~~~~~~~~~~i~-~~~~d~~~lp-~~~~sfD~Vi~~~~l~~~~d~~~~L~e 216 (217)
+|+++.|-+.+.+.+.+.-. .++. |++++.+++| ++++++|+|++.++||.+.|+.+.|+|
T Consensus 105 lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e 167 (252)
T KOG4300|consen 105 LDPNEKMEEIADKSAAEKKP--LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNE 167 (252)
T ss_pred eCCcHHHHHHHHHHHhhccC--cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHH
Confidence 99999999999999877632 5776 9999999999 899999999999999999999999986
No 5
>PLN02244 tocopherol O-methyltransferase
Probab=99.78 E-value=5.6e-18 Score=142.29 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhc------CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccc
Q 027860 112 AGYKSQLFDNLR------GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185 (217)
Q Consensus 112 ~~~~~~~~~~l~------~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~ 185 (217)
......+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+.|++.|++++...++. ++++|+++|+
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D~ 177 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQVADA 177 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcCc
Confidence 344445555443 256899999999999999998755779999999999999999998888775 5799999999
Q ss_pred cccCCCCCcccEEEeccccccccChhhhccC
Q 027860 186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 186 ~~lp~~~~sfD~Vi~~~~l~~~~d~~~~L~e 216 (217)
.++|+++++||+|++..+++|++|+...|+|
T Consensus 178 ~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e 208 (340)
T PLN02244 178 LNQPFEDGQFDLVWSMESGEHMPDKRKFVQE 208 (340)
T ss_pred ccCCCCCCCccEEEECCchhccCCHHHHHHH
Confidence 9999999999999999999999998887765
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=7.9e-18 Score=139.64 Aligned_cols=90 Identities=23% Similarity=0.243 Sum_probs=79.0
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.+|||||||+|.++..+++ .+.+|+|||++++|++.|++++...+.. .+++++++|++++++++++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 567999999999999998874 5679999999999999999886654432 47899999999999888899999999999
Q ss_pred ccccChhhhccC
Q 027860 205 CSVKDVDMTLQG 216 (217)
Q Consensus 205 ~~~~d~~~~L~e 216 (217)
+|++|+...|++
T Consensus 209 eHv~d~~~~L~~ 220 (322)
T PLN02396 209 EHVANPAEFCKS 220 (322)
T ss_pred HhcCCHHHHHHH
Confidence 999999888765
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.74 E-value=4.9e-17 Score=131.88 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=78.7
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHH--cCCCCCCeEEEeccccccCCCCCcccEEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPVSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~--~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi 199 (217)
.++.+|||||||+|.++..+++. +..+++|+|+|++|++.|+++... ... ..+++++++|++.+|+++++||+|+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~-~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC-YKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc-CCCeEEEEcccccCCCCCCCEeEEE
Confidence 46789999999999999888763 346899999999999999887532 111 1478999999999999999999999
Q ss_pred eccccccccChhhhccC
Q 027860 200 GTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 200 ~~~~l~~~~d~~~~L~e 216 (217)
+.++++|++|+...|+|
T Consensus 151 ~~~~l~~~~d~~~~l~e 167 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQE 167 (261)
T ss_pred EecccccCCCHHHHHHH
Confidence 99999999999988876
No 8
>PRK05785 hypothetical protein; Provisional
Probab=99.73 E-value=3.7e-17 Score=129.90 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.+|||||||+|.++..+++..+.+++|+|+|++|++.|+++ ..++++|++.+|+++++||+|++.+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~~l 120 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecChh
Confidence 5789999999999999998864356999999999999999864 136789999999999999999999999
Q ss_pred ccccChhhhccC
Q 027860 205 CSVKDVDMTLQG 216 (217)
Q Consensus 205 ~~~~d~~~~L~e 216 (217)
+|++|+++.|+|
T Consensus 121 ~~~~d~~~~l~e 132 (226)
T PRK05785 121 HASDNIEKVIAE 132 (226)
T ss_pred hccCCHHHHHHH
Confidence 999999999887
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.72 E-value=5.1e-18 Score=132.44 Aligned_cols=87 Identities=28% Similarity=0.344 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.+|||||||.|.++..+| ..+..|+|+|+++.+++.|+..+.+.++ ++++.+..++++....++||+|+|..||
T Consensus 59 ~g~~vLDvGCGgG~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHH-HCCCeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 89999999999999999998 4568999999999999999999988886 5789999999997666899999999999
Q ss_pred ccccChhhhcc
Q 027860 205 CSVKDVDMTLQ 215 (217)
Q Consensus 205 ~~~~d~~~~L~ 215 (217)
+|++||+.+++
T Consensus 135 EHv~dp~~~~~ 145 (243)
T COG2227 135 EHVPDPESFLR 145 (243)
T ss_pred HccCCHHHHHH
Confidence 99999997664
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.69 E-value=3.9e-16 Score=124.38 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=86.7
Q ss_pred HHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC
Q 027860 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 113 ~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp 189 (217)
.++..++..+. .++.+|||+|||+|.++..+++. +..+++|+|+++.|++.|++++...+. ++++++.+|+..++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL--HNVELVHGNAMELP 109 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEEechhcCC
Confidence 44555666665 56789999999999999988863 456999999999999999999877765 58999999999999
Q ss_pred CCCCcccEEEeccccccccChhhhccC
Q 027860 190 VSDASVDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 190 ~~~~sfD~Vi~~~~l~~~~d~~~~L~e 216 (217)
+++++||+|++.+++++++++.+.|+|
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~ 136 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVPDYMQVLRE 136 (231)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHH
Confidence 888999999999999999998877654
No 11
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.68 E-value=7.5e-16 Score=120.65 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=88.5
Q ss_pred HHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhC-C------CCeEEEEcCCHHHHHHHHHHHHHcCCCCC-CeEEEecc
Q 027860 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-T------DVQVLGVDPNRKMEKYAQTAAVAAGLPLT-NFKFLQAV 184 (217)
Q Consensus 114 ~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~-~------~~~v~giD~S~~~l~~a~~~~~~~~~~~~-~i~~~~~d 184 (217)
|...+...+. .++.++||++||||..+..+.+. . ..+|+++|+|++||+.++++..+.++... .+.|+.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 4444556665 67899999999999999888752 1 36899999999999999999988887622 38999999
Q ss_pred ccccCCCCCcccEEEeccccccccChhhhccC
Q 027860 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 185 ~~~lp~~~~sfD~Vi~~~~l~~~~d~~~~L~e 216 (217)
+++|||++++||..++.+.+.+++|+.+.|+|
T Consensus 168 AE~LpFdd~s~D~yTiafGIRN~th~~k~l~E 199 (296)
T KOG1540|consen 168 AEDLPFDDDSFDAYTIAFGIRNVTHIQKALRE 199 (296)
T ss_pred cccCCCCCCcceeEEEecceecCCCHHHHHHH
Confidence 99999999999999999999999999999987
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.68 E-value=3e-16 Score=126.99 Aligned_cols=99 Identities=28% Similarity=0.331 Sum_probs=84.2
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CCCCc
Q 027860 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDAS 194 (217)
Q Consensus 116 ~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~s 194 (217)
..+++.+..++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.|++++...++. .+++++++|+.+++ +.+++
T Consensus 35 ~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 35 DRLLAELPPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHHHHhcCCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHhhhcCCC
Confidence 3455555446789999999999999999854 679999999999999999999888764 57899999998874 66789
Q ss_pred ccEEEeccccccccChhhhccC
Q 027860 195 VDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 195 fD~Vi~~~~l~~~~d~~~~L~e 216 (217)
||+|++..+++|++++...|++
T Consensus 113 fD~V~~~~vl~~~~~~~~~l~~ 134 (255)
T PRK11036 113 VDLILFHAVLEWVADPKSVLQT 134 (255)
T ss_pred CCEEEehhHHHhhCCHHHHHHH
Confidence 9999999999999999877654
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.67 E-value=2.9e-16 Score=117.38 Aligned_cols=89 Identities=31% Similarity=0.512 Sum_probs=79.0
Q ss_pred CCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi~ 200 (217)
++.+|||+|||+|.++..+++ .++.+++|+|+|+.|++.|+++++..++ ++++|.++|+.+++ ++ +.||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~--~ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL--DNIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS--TTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc--cccceEEeehhccccccC-CCeeEEEE
Confidence 578999999999999999994 5678999999999999999999999887 48999999999987 65 89999999
Q ss_pred ccccccccChhhhccC
Q 027860 201 TLVLCSVKDVDMTLQG 216 (217)
Q Consensus 201 ~~~l~~~~d~~~~L~e 216 (217)
..+++|+.++...|++
T Consensus 80 ~~~l~~~~~~~~~l~~ 95 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKN 95 (152)
T ss_dssp ESTGGGTSHHHHHHHH
T ss_pred cCchhhccCHHHHHHH
Confidence 9999999998877653
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.67 E-value=1.1e-16 Score=109.31 Aligned_cols=82 Identities=29% Similarity=0.392 Sum_probs=70.5
Q ss_pred EEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccccccccC
Q 027860 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 130 LDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~~d 209 (217)
||+|||+|..+..+++.++.+++|+|+++.+++.++++.... ++.+..+|+..+|+++++||+|++..+++|+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceeeccC
Confidence 899999999999999777889999999999999999986543 456999999999999999999999999999988
Q ss_pred hhhhccC
Q 027860 210 VDMTLQG 216 (217)
Q Consensus 210 ~~~~L~e 216 (217)
+...|+|
T Consensus 76 ~~~~l~e 82 (95)
T PF08241_consen 76 PEAALRE 82 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.64 E-value=1.4e-15 Score=122.72 Aligned_cols=93 Identities=23% Similarity=0.293 Sum_probs=77.9
Q ss_pred HHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc
Q 027860 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 116 ~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s 194 (217)
..+++.+. .++.+|||+|||+|.++..+++ .+.+++|+|+|+.|++.|+++. ....++++|++.+|+++++
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~-------~~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKD-------AADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhC-------CCCCEEEcCcccCcCCCCc
Confidence 34455554 3567999999999999988874 4679999999999999998863 2346899999999999999
Q ss_pred ccEEEeccccccccChhhhccC
Q 027860 195 VDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 195 fD~Vi~~~~l~~~~d~~~~L~e 216 (217)
||+|+++.++++++|+...|+|
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~ 125 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRE 125 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHH
Confidence 9999999999999999888765
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=2.1e-15 Score=122.00 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=76.5
Q ss_pred HHHHHHhc-CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCC
Q 027860 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 116 ~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 193 (217)
..+++.+. .++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|++. +++++++|++.++ +++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CCC
Confidence 44566665 57789999999999999998863 467999999999999999763 4679999998885 567
Q ss_pred cccEEEeccccccccChhhhccC
Q 027860 194 SVDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 194 sfD~Vi~~~~l~~~~d~~~~L~e 216 (217)
+||+|+++.++||++|+...|++
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~ 111 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVR 111 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHH
Confidence 99999999999999998877654
No 17
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.60 E-value=2.2e-15 Score=117.85 Aligned_cols=76 Identities=25% Similarity=0.263 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|+++. +++.+.++|+.. |+++++||+|++..+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 6678999999999999999864 5679999999999999998763 356788999888 888999999999999
Q ss_pred ccccc
Q 027860 204 LCSVK 208 (217)
Q Consensus 204 l~~~~ 208 (217)
|+|++
T Consensus 115 L~hl~ 119 (204)
T TIGR03587 115 LIHIN 119 (204)
T ss_pred hhhCC
Confidence 99995
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.60 E-value=3.5e-15 Score=105.47 Aligned_cols=81 Identities=26% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-cccCCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~Vi~~~ 202 (217)
|+.+|||||||+|.++..+++ .++.+++|+|+|+.|++.|++++...+.. ++++++++|+ ....+ .+.||+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECccccCccc-CCCCCEEEECC
Confidence 578999999999999999997 58889999999999999999999666665 7999999999 33333 35699999999
Q ss_pred -ccccc
Q 027860 203 -VLCSV 207 (217)
Q Consensus 203 -~l~~~ 207 (217)
.++++
T Consensus 79 ~~~~~~ 84 (112)
T PF12847_consen 79 FTLHFL 84 (112)
T ss_dssp GSGGGC
T ss_pred Cccccc
Confidence 44433
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=1.1e-14 Score=117.19 Aligned_cols=103 Identities=14% Similarity=0.199 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEE
Q 027860 104 MKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF 180 (217)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~ 180 (217)
...|+. +......++.....++.+|||||||+|.++..+++ .++.+++|+|+|+.|++.|++++...+.. .++++
T Consensus 36 ~p~y~~-~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~ 113 (247)
T PRK15451 36 VPGYSN-IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDV 113 (247)
T ss_pred CCChHH-HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEE
Confidence 344554 33333334443334778999999999999888775 36789999999999999999999877764 57999
Q ss_pred EeccccccCCCCCcccEEEeccccccccCh
Q 027860 181 LQAVGEAIPVSDASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 181 ~~~d~~~lp~~~~sfD~Vi~~~~l~~~~d~ 210 (217)
+++|+..+|++ .+|+|+++++++|+++.
T Consensus 114 ~~~d~~~~~~~--~~D~vv~~~~l~~l~~~ 141 (247)
T PRK15451 114 IEGDIRDIAIE--NASMVVLNFTLQFLEPS 141 (247)
T ss_pred EeCChhhCCCC--CCCEEehhhHHHhCCHH
Confidence 99999998864 48999999999999753
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=1.3e-14 Score=117.50 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=78.5
Q ss_pred HHHHHHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC
Q 027860 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (217)
Q Consensus 114 ~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~ 191 (217)
....++..+. .++.+|||||||+|.++..+++ .++.+++|+|+|+.|++.|+++. +++.++.+|+..++ +
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-~ 90 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-P 90 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-C
Confidence 3445566655 4678999999999999999886 35679999999999999998863 46789999998774 4
Q ss_pred CCcccEEEeccccccccChhhhccC
Q 027860 192 DASVDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~~~d~~~~L~e 216 (217)
+++||+|+++.+++|++|+...|++
T Consensus 91 ~~~fD~v~~~~~l~~~~d~~~~l~~ 115 (258)
T PRK01683 91 PQALDLIFANASLQWLPDHLELFPR 115 (258)
T ss_pred CCCccEEEEccChhhCCCHHHHHHH
Confidence 5699999999999999998877654
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=1.4e-14 Score=112.79 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++++...++ .++++.++|+..++++ ++||+|+++.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~--~~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL--DNLHTAVVDLNNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CcceEEecChhhCCcC-CCcCEEEEecch
Confidence 6789999999999999999864 67999999999999999999888876 4688999999888774 679999999999
Q ss_pred cccc
Q 027860 205 CSVK 208 (217)
Q Consensus 205 ~~~~ 208 (217)
||++
T Consensus 106 ~~~~ 109 (197)
T PRK11207 106 MFLE 109 (197)
T ss_pred hhCC
Confidence 9876
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.57 E-value=1.7e-14 Score=120.24 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
.++++|||||||+|.++..++......|+|+|+|+.|+..++......+.. .++.|+.+|++.+|+ +++||+|++..+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-QRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 467899999999999999998655557999999999997665543332222 479999999999998 789999999999
Q ss_pred cccccChhhhccC
Q 027860 204 LCSVKDVDMTLQG 216 (217)
Q Consensus 204 l~~~~d~~~~L~e 216 (217)
++|+.|+...|++
T Consensus 199 l~H~~dp~~~L~~ 211 (322)
T PRK15068 199 LYHRRSPLDHLKQ 211 (322)
T ss_pred hhccCCHHHHHHH
Confidence 9999999888764
No 23
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.56 E-value=3.2e-15 Score=113.55 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=76.4
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C-CCCCcccEEEec
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~sfD~Vi~~ 201 (217)
.++.+|||+|||.|.++.+|.+..+.+.+|+|++++.+..|.++ .+.++++|++.- + |++++||.||.+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r---------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR---------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc---------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 38899999999999999999887888999999999999888875 456999999764 3 899999999999
Q ss_pred cccccccChhhhccCC
Q 027860 202 LVLCSVKDVDMTLQGK 217 (217)
Q Consensus 202 ~~l~~~~d~~~~L~e~ 217 (217)
.+|.++.+|+.+|+|+
T Consensus 83 qtLQ~~~~P~~vL~Em 98 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEM 98 (193)
T ss_pred hHHHhHhHHHHHHHHH
Confidence 9999999999999884
No 24
>PRK06202 hypothetical protein; Provisional
Probab=99.56 E-value=2.7e-14 Score=113.95 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=70.8
Q ss_pred CCCCeEEEECCCCCcchHHhhh-----CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV 198 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~-----~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 198 (217)
.++.+|||||||+|.++..+++ .++.+++|+|+|++|++.|+++.... ++.+.+.++..+++++++||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccEE
Confidence 3667999999999999888764 23468999999999999998875432 4567777888887777899999
Q ss_pred EeccccccccChh--hhccC
Q 027860 199 VGTLVLCSVKDVD--MTLQG 216 (217)
Q Consensus 199 i~~~~l~~~~d~~--~~L~e 216 (217)
++++++||+++++ +.|+|
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~ 153 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLAD 153 (232)
T ss_pred EECCeeecCChHHHHHHHHH
Confidence 9999999999853 45544
No 25
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.56 E-value=1.4e-14 Score=117.61 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=80.7
Q ss_pred HHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCC
Q 027860 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 115 ~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 193 (217)
...++..+. .++.+|||||||+|..+..+++..+.+|+|+|+|+.|++.|+++.... .++.++.+|+...|++++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK----NKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC----CceEEEECCcccCCCCCC
Confidence 344666665 578899999999999999887655679999999999999999886431 478999999999999999
Q ss_pred cccEEEecccccccc--Chhhhcc
Q 027860 194 SVDAVVGTLVLCSVK--DVDMTLQ 215 (217)
Q Consensus 194 sfD~Vi~~~~l~~~~--d~~~~L~ 215 (217)
+||+|++..+++|++ ++...|+
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~ 140 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFE 140 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHH
Confidence 999999999999886 6665554
No 26
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=1.8e-14 Score=116.13 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccc
Q 027860 107 YEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185 (217)
Q Consensus 107 ~~~~~~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~ 185 (217)
+++......+.+++.+. .+|.+|||||||.|.++.++|+..+.+|+|+++|+++.+.+++++...|+. .+++++..|.
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~-~~v~v~l~d~ 131 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-DNVEVRLQDY 131 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC-cccEEEeccc
Confidence 44434455666777777 899999999999999999999877899999999999999999999999986 6899999998
Q ss_pred cccCCCCCcccEEEeccccccccC
Q 027860 186 EAIPVSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 186 ~~lp~~~~sfD~Vi~~~~l~~~~d 209 (217)
.++. +.||-|++..+++|+..
T Consensus 132 rd~~---e~fDrIvSvgmfEhvg~ 152 (283)
T COG2230 132 RDFE---EPFDRIVSVGMFEHVGK 152 (283)
T ss_pred cccc---cccceeeehhhHHHhCc
Confidence 8885 45999999999999975
No 27
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.55 E-value=5e-15 Score=116.63 Aligned_cols=86 Identities=27% Similarity=0.293 Sum_probs=70.7
Q ss_pred CCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCC----CeEEEeccccccCCCCCcccEEEec
Q 027860 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~----~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
+++|||+|||+|.++..|+ +.+++|+|||+++.|++.|++.......... ++++...+++.+. +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLA-rlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLA-RLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhH-hhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 4789999999999999998 6678999999999999999998433332222 3667788888774 459999999
Q ss_pred cccccccChhhhcc
Q 027860 202 LVLCSVKDVDMTLQ 215 (217)
Q Consensus 202 ~~l~~~~d~~~~L~ 215 (217)
.+++|+.||...++
T Consensus 166 evleHV~dp~~~l~ 179 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLN 179 (282)
T ss_pred HHHHHHhCHHHHHH
Confidence 99999999987753
No 28
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.55 E-value=6.8e-15 Score=102.38 Aligned_cols=79 Identities=29% Similarity=0.406 Sum_probs=65.2
Q ss_pred EEEECCCCCcchHHhhhCC----CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc-c
Q 027860 129 VLEIGIGTGPNLKYYAADT----DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-V 203 (217)
Q Consensus 129 VLDiGcG~G~~~~~la~~~----~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~-~ 203 (217)
|||+|||+|..+..+.+.. ..+++|+|+|++|++.++++....+. +++|+++|+.++++.+++||+|++.. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999988632 37999999999999999999887664 78999999999998888999999965 4
Q ss_pred cccccCh
Q 027860 204 LCSVKDV 210 (217)
Q Consensus 204 l~~~~d~ 210 (217)
++|+++.
T Consensus 78 ~~~~~~~ 84 (101)
T PF13649_consen 78 LHHLSPE 84 (101)
T ss_dssp GGGSSHH
T ss_pred cCCCCHH
Confidence 9998753
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.54 E-value=2.4e-14 Score=125.58 Aligned_cols=96 Identities=25% Similarity=0.360 Sum_probs=81.8
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCccc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 196 (217)
+++.+. .++.+|||||||+|..+..+++..+.+++|+|+|+.|++.|+++..... .++.|.++|+..+++++++||
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~---~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK---CSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC---CceEEEEcCcccCCCCCCCEE
Confidence 444444 4678999999999999988887667799999999999999998765333 478999999999998888999
Q ss_pred EEEeccccccccChhhhccC
Q 027860 197 AVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 197 ~Vi~~~~l~~~~d~~~~L~e 216 (217)
+|++..+++|++|+...|+|
T Consensus 335 ~I~s~~~l~h~~d~~~~l~~ 354 (475)
T PLN02336 335 VIYSRDTILHIQDKPALFRS 354 (475)
T ss_pred EEEECCcccccCCHHHHHHH
Confidence 99999999999999888765
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.54 E-value=5.4e-14 Score=112.71 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=73.6
Q ss_pred HHHHhcCCCCeEEEECCCCCcchHHhhhC---CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc
Q 027860 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 ~~~~l~~~~~~VLDiGcG~G~~~~~la~~---~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s 194 (217)
+......++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|++++...+.. .+++++++|+..++++ .
T Consensus 46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~--~ 122 (239)
T TIGR00740 46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHVEIK--N 122 (239)
T ss_pred HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECChhhCCCC--C
Confidence 33333346789999999999999888763 5789999999999999999998766543 4789999999999875 4
Q ss_pred ccEEEeccccccccC
Q 027860 195 VDAVVGTLVLCSVKD 209 (217)
Q Consensus 195 fD~Vi~~~~l~~~~d 209 (217)
+|+|++.++++|+++
T Consensus 123 ~d~v~~~~~l~~~~~ 137 (239)
T TIGR00740 123 ASMVILNFTLQFLPP 137 (239)
T ss_pred CCEEeeecchhhCCH
Confidence 899999999999864
No 31
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.53 E-value=3.6e-14 Score=118.35 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=76.2
Q ss_pred CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
.++.+|||||||+|.++..+++. ++.+++++|+|++|++.|+++... .+++++.+|++.+++++++||+|++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 36789999999999998888763 456899999999999999987532 367899999999999889999999999
Q ss_pred ccccccChhhhccC
Q 027860 203 VLCSVKDVDMTLQG 216 (217)
Q Consensus 203 ~l~~~~d~~~~L~e 216 (217)
++++++++.+.|+|
T Consensus 187 ~L~~~~d~~~~L~e 200 (340)
T PLN02490 187 SIEYWPDPQRGIKE 200 (340)
T ss_pred hhhhCCCHHHHHHH
Confidence 99999999887765
No 32
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.53 E-value=1.5e-13 Score=108.65 Aligned_cols=92 Identities=27% Similarity=0.236 Sum_probs=74.9
Q ss_pred HHHHHHHHHhc---CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC
Q 027860 113 GYKSQLFDNLR---GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 113 ~~~~~~~~~l~---~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp 189 (217)
.++..++..+. .++.+|||||||+|.++..+++. +.+++|+|+|+.|+..|++++...+.. .++.|.++|+..++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhhCC
Confidence 34444444443 35789999999999999999854 568999999999999999998776653 47899999998876
Q ss_pred CCCCcccEEEeccccccccC
Q 027860 190 VSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 190 ~~~~sfD~Vi~~~~l~~~~d 209 (217)
++||+|++..+++|++.
T Consensus 118 ---~~fD~ii~~~~l~~~~~ 134 (219)
T TIGR02021 118 ---GEFDIVVCMDVLIHYPA 134 (219)
T ss_pred ---CCcCEEEEhhHHHhCCH
Confidence 78999999999998864
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.53 E-value=3e-14 Score=115.98 Aligned_cols=101 Identities=22% Similarity=0.263 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027860 105 KSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~ 183 (217)
..+++........+++++. .++.+|||||||.|.++.++++..+.+|+||.+|++..+.+++++.+.|+. .++++...
T Consensus 41 ~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~-~~v~v~~~ 119 (273)
T PF02353_consen 41 DTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE-DRVEVRLQ 119 (273)
T ss_dssp --HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS-STEEEEES
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEe
Confidence 3444444455566777777 789999999999999999999866889999999999999999999999986 68999999
Q ss_pred cccccCCCCCcccEEEeccccccccC
Q 027860 184 VGEAIPVSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 184 d~~~lp~~~~sfD~Vi~~~~l~~~~d 209 (217)
|..+++. +||.|+++.+++|+..
T Consensus 120 D~~~~~~---~fD~IvSi~~~Ehvg~ 142 (273)
T PF02353_consen 120 DYRDLPG---KFDRIVSIEMFEHVGR 142 (273)
T ss_dssp -GGG------S-SEEEEESEGGGTCG
T ss_pred eccccCC---CCCEEEEEechhhcCh
Confidence 9988753 8999999999999953
No 34
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.53 E-value=2.8e-14 Score=110.90 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-c-CCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-PVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~-l-p~~~~sfD~Vi~~~ 202 (217)
++.+|||||||+|.++..+++..+..++|+|+++++++.++++ +++++++|+.. + ++++++||+|+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 5679999999999999988765566889999999999988652 46788899876 4 37778999999999
Q ss_pred ccccccChhhhccC
Q 027860 203 VLCSVKDVDMTLQG 216 (217)
Q Consensus 203 ~l~~~~d~~~~L~e 216 (217)
+++|++|+...|+|
T Consensus 84 ~l~~~~d~~~~l~e 97 (194)
T TIGR02081 84 TLQATRNPEEILDE 97 (194)
T ss_pred HhHcCcCHHHHHHH
Confidence 99999999988875
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.52 E-value=6.4e-14 Score=114.36 Aligned_cols=91 Identities=31% Similarity=0.392 Sum_probs=79.1
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
.++.+|||||||+|..+..+++ ....+++|+|+++.|++.|+++....++ .+++++.+|++.+|+++++||+|+++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEcchhhCCCCCCceeEEEEc
Confidence 3788999999999988776665 3345899999999999999999888776 48899999999999988899999999
Q ss_pred cccccccChhhhccC
Q 027860 202 LVLCSVKDVDMTLQG 216 (217)
Q Consensus 202 ~~l~~~~d~~~~L~e 216 (217)
.+++++++....|+|
T Consensus 154 ~v~~~~~d~~~~l~~ 168 (272)
T PRK11873 154 CVINLSPDKERVFKE 168 (272)
T ss_pred CcccCCCCHHHHHHH
Confidence 999999988777654
No 36
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.51 E-value=8.3e-14 Score=115.24 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=75.1
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCccc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 196 (217)
++..+. .++++|||||||+|.++..++......|+|+|+|+.|+..++......+.. .++.+..++++++|.. ++||
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-KRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-CCeEEEECCHHHCCCC-CCcC
Confidence 444443 478899999999999988887654457999999999997754432222211 4678899999999864 5899
Q ss_pred EEEeccccccccChhhhccC
Q 027860 197 AVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 197 ~Vi~~~~l~~~~d~~~~L~e 216 (217)
+|+++.+++|++++..+|+|
T Consensus 191 ~V~s~gvL~H~~dp~~~L~e 210 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQ 210 (314)
T ss_pred EEEEcchhhccCCHHHHHHH
Confidence 99999999999999888765
No 37
>PRK08317 hypothetical protein; Provisional
Probab=99.50 E-value=1.9e-13 Score=108.80 Aligned_cols=100 Identities=28% Similarity=0.485 Sum_probs=82.0
Q ss_pred HHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCC
Q 027860 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (217)
Q Consensus 114 ~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~ 190 (217)
++..++..+. .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.++++....+ .++.+..+|+..+++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG---PNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC---CceEEEecccccCCC
Confidence 3344555554 57789999999999999988863 45789999999999999998733222 578999999999988
Q ss_pred CCCcccEEEeccccccccChhhhccC
Q 027860 191 SDASVDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 191 ~~~sfD~Vi~~~~l~~~~d~~~~L~e 216 (217)
++++||+|++..+++|+.++...+++
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~ 109 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAE 109 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHH
Confidence 88999999999999999998877653
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.49 E-value=1.1e-13 Score=107.60 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.+|||+|||+|.++.++++. +.+|+|+|+|+.|++.+++++...++ ++.+...|+...+++ ++||+|+++.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 104 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL---PLRTDAYDINAAALN-EDYDFIFSTVVF 104 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC---CceeEeccchhcccc-CCCCEEEEeccc
Confidence 5679999999999999999864 67999999999999999998887775 367888888776664 679999999999
Q ss_pred ccccC
Q 027860 205 CSVKD 209 (217)
Q Consensus 205 ~~~~d 209 (217)
++++.
T Consensus 105 ~~~~~ 109 (195)
T TIGR00477 105 MFLQA 109 (195)
T ss_pred ccCCH
Confidence 98853
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.49 E-value=1.9e-13 Score=109.02 Aligned_cols=86 Identities=27% Similarity=0.354 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
.+.+|||||||+|.++..+++ .+..+++|+|+++.+++.++++.. +++.++.+|+..+++++++||+|++.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 457899999999999999886 345679999999999999987643 3678999999999988899999999999
Q ss_pred cccccChhhhccC
Q 027860 204 LCSVKDVDMTLQG 216 (217)
Q Consensus 204 l~~~~d~~~~L~e 216 (217)
++|+.++...|.+
T Consensus 108 l~~~~~~~~~l~~ 120 (240)
T TIGR02072 108 LQWCDDLSQALSE 120 (240)
T ss_pred hhhccCHHHHHHH
Confidence 9999998877653
No 40
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.47 E-value=6e-13 Score=106.14 Aligned_cols=100 Identities=30% Similarity=0.377 Sum_probs=82.6
Q ss_pred HHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCC--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC
Q 027860 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (217)
Q Consensus 115 ~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~ 191 (217)
...++..+. .++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.+++++...++. .++.++.+|+..++++
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCCC
Confidence 334444444 457899999999999999988644 479999999999999999988765553 5789999999998887
Q ss_pred CCcccEEEeccccccccChhhhcc
Q 027860 192 DASVDAVVGTLVLCSVKDVDMTLQ 215 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~~~d~~~~L~ 215 (217)
+++||+|++.+++++++++...|+
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~ 142 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALR 142 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHH
Confidence 789999999999999999877664
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.47 E-value=1e-14 Score=101.02 Aligned_cols=84 Identities=30% Similarity=0.332 Sum_probs=54.4
Q ss_pred EEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEEecccccc
Q 027860 130 LEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLVLCS 206 (217)
Q Consensus 130 LDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi~~~~l~~ 206 (217)
||||||+|.++..+.+ .+..+++|+|+|+.|++.|++++...+. .+...+..+..+.. ...++||+|++..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--DNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--cceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 7999999999999886 4677999999999999999998887764 23444444444432 12259999999999999
Q ss_pred ccChhhhcc
Q 027860 207 VKDVDMTLQ 215 (217)
Q Consensus 207 ~~d~~~~L~ 215 (217)
++++...|+
T Consensus 79 l~~~~~~l~ 87 (99)
T PF08242_consen 79 LEDIEAVLR 87 (99)
T ss_dssp -S-HHHHHH
T ss_pred hhhHHHHHH
Confidence 998887764
No 42
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.47 E-value=3.5e-13 Score=107.15 Aligned_cols=81 Identities=26% Similarity=0.221 Sum_probs=68.6
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.+|||||||+|.++..+++. +..++|+|+|+.|++.|+++....+.. .++.+..+|+. ..+++||+|++..++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~---~~~~~fD~v~~~~~l 137 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLE---SLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCch---hccCCcCEEEEcchh
Confidence 6789999999999999999854 457999999999999999998777653 47899999843 345789999999999
Q ss_pred ccccCh
Q 027860 205 CSVKDV 210 (217)
Q Consensus 205 ~~~~d~ 210 (217)
+|++++
T Consensus 138 ~~~~~~ 143 (230)
T PRK07580 138 IHYPQE 143 (230)
T ss_pred hcCCHH
Confidence 988754
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=6.9e-14 Score=115.06 Aligned_cols=79 Identities=27% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.+|||+|||+|.++.++++. +.+|+|+|+|+.+++.+++++...++ ++++...|+...++ +++||+|+++.++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~~~~~-~~~fD~I~~~~vl 194 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDINSASI-QEEYDFILSTVVL 194 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechhcccc-cCCccEEEEcchh
Confidence 5569999999999999999854 67999999999999999999888775 58888899887766 6789999999999
Q ss_pred cccc
Q 027860 205 CSVK 208 (217)
Q Consensus 205 ~~~~ 208 (217)
+|++
T Consensus 195 ~~l~ 198 (287)
T PRK12335 195 MFLN 198 (287)
T ss_pred hhCC
Confidence 9886
No 44
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.46 E-value=1e-13 Score=106.35 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 111 ~~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
.......++..+. ....+|.|+|||+|..+..|++ .++..++|+|-|++|++.|+++. ++.+|..+|+..+
T Consensus 15 RtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w 87 (257)
T COG4106 15 RTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTW 87 (257)
T ss_pred ccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhc
Confidence 3444555666666 6788999999999999999997 68889999999999999998874 7899999999998
Q ss_pred CCCCCcccEEEeccccccccChhhhc
Q 027860 189 PVSDASVDAVVGTLVLCSVKDVDMTL 214 (217)
Q Consensus 189 p~~~~sfD~Vi~~~~l~~~~d~~~~L 214 (217)
. ++..+|+++++.+|++++|=...|
T Consensus 88 ~-p~~~~dllfaNAvlqWlpdH~~ll 112 (257)
T COG4106 88 K-PEQPTDLLFANAVLQWLPDHPELL 112 (257)
T ss_pred C-CCCccchhhhhhhhhhccccHHHH
Confidence 4 567899999999999999854443
No 45
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=2.4e-13 Score=107.86 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=75.6
Q ss_pred CeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccccc
Q 027860 127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 205 (217)
++|||||||+|.++..+++. ++.+++|+|+|+++++.+++++...++. .++.++.+|+...|++ ++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 37999999999999988864 4578999999999999999999888876 6889999999777764 5899999999999
Q ss_pred cccChhhhcc
Q 027860 206 SVKDVDMTLQ 215 (217)
Q Consensus 206 ~~~d~~~~L~ 215 (217)
|++++...|+
T Consensus 79 ~~~~~~~~l~ 88 (224)
T smart00828 79 HIKDKMDLFS 88 (224)
T ss_pred hCCCHHHHHH
Confidence 9998877654
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.44 E-value=7.9e-13 Score=101.61 Aligned_cols=81 Identities=26% Similarity=0.291 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.++||+|||.|+++.+|+ ..|..|+++|+|+.+++.+++.+++.++ .++..+.|+....++ +.||+|++..++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA-~~G~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~~~-~~yD~I~st~v~ 104 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLA-SQGFDVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFDFP-EEYDFIVSTVVF 104 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHH-HTT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEEEEESSG
T ss_pred CCCcEEEcCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhcccc-CCcCEEEEEEEe
Confidence 77899999999999999998 5577999999999999999999988886 489999999988775 689999999999
Q ss_pred ccccCh
Q 027860 205 CSVKDV 210 (217)
Q Consensus 205 ~~~~d~ 210 (217)
+|++..
T Consensus 105 ~fL~~~ 110 (192)
T PF03848_consen 105 MFLQRE 110 (192)
T ss_dssp GGS-GG
T ss_pred ccCCHH
Confidence 988743
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.44 E-value=1e-12 Score=101.24 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=67.1
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
++.+|||||||+|..+..++. .++.+|+|+|+++.|++.|++++++.++. +++++.+|+..++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~--~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK--NVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC--CEEEEeccHhhCCC-CCCccEEEEcc
Confidence 478999999999999988875 56789999999999999999999999874 69999999999876 67999999975
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.44 E-value=1.3e-12 Score=100.43 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=68.8
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
++.+|||||||+|.++..++. .+..+|+|+|+|+.|++.+++++++.++ .+++++.+|+..++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~--~~i~~i~~d~~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL--NNVEIVNGRAEDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC--CCeEEEecchhhcc-ccCCccEEEehh-
Confidence 578999999999999988875 4567899999999999999999888886 47999999999874 357899999976
Q ss_pred cccccCh
Q 027860 204 LCSVKDV 210 (217)
Q Consensus 204 l~~~~d~ 210 (217)
++++++.
T Consensus 118 ~~~~~~~ 124 (181)
T TIGR00138 118 LASLNVL 124 (181)
T ss_pred hhCHHHH
Confidence 5555443
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.43 E-value=1.5e-12 Score=102.03 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=74.4
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s 194 (217)
+++.+. .++.+|||||||+|..+..+++. ...+|+++|+++++++.|++++...++. .+++++.+|+........+
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCCccCCC
Confidence 344443 46789999999999999888763 2468999999999999999999888764 4689999999876545579
Q ss_pred ccEEEeccccccccC
Q 027860 195 VDAVVGTLVLCSVKD 209 (217)
Q Consensus 195 fD~Vi~~~~l~~~~d 209 (217)
||+|++..+++++++
T Consensus 143 fD~Ii~~~~~~~~~~ 157 (205)
T PRK13944 143 FDAIIVTAAASTIPS 157 (205)
T ss_pred ccEEEEccCcchhhH
Confidence 999999999888764
No 50
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.42 E-value=8.2e-13 Score=100.73 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=64.5
Q ss_pred Hhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEE
Q 027860 121 NLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV 199 (217)
Q Consensus 121 ~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi 199 (217)
.++ ....++||+|||.|.++..|+. .+..++++|+|+.+++.|++++... ++|+|.++|+... .+++.||+|+
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~-rCd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~-~P~~~FDLIV 111 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAP-RCDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEF-WPEGRFDLIV 111 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGG-GEEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHH-hhCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCC-CCCCCeeEEE
Confidence 344 4567899999999999999984 4678999999999999999998643 5899999999776 5789999999
Q ss_pred eccccccccCh
Q 027860 200 GTLVLCSVKDV 210 (217)
Q Consensus 200 ~~~~l~~~~d~ 210 (217)
+..+++++.+.
T Consensus 112 ~SEVlYYL~~~ 122 (201)
T PF05401_consen 112 LSEVLYYLDDA 122 (201)
T ss_dssp EES-GGGSSSH
T ss_pred EehHhHcCCCH
Confidence 99999999864
No 51
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.42 E-value=1.4e-13 Score=103.10 Aligned_cols=80 Identities=31% Similarity=0.387 Sum_probs=65.4
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
.++.+|||||||.|.++..+++. +.+++|+|+++.+++. . ++.....+....+.++++||+|+++.+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-------R-----NVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-------T-----TSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-------h-----hhhhhhhhhhhhhccccchhhHhhHHH
Confidence 37889999999999999999754 4599999999999988 1 234455545555567899999999999
Q ss_pred cccccChhhhccC
Q 027860 204 LCSVKDVDMTLQG 216 (217)
Q Consensus 204 l~~~~d~~~~L~e 216 (217)
|+|++|+...|++
T Consensus 88 l~~~~d~~~~l~~ 100 (161)
T PF13489_consen 88 LEHLPDPEEFLKE 100 (161)
T ss_dssp GGGSSHHHHHHHH
T ss_pred HhhcccHHHHHHH
Confidence 9999999888764
No 52
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.42 E-value=1.3e-12 Score=108.29 Aligned_cols=82 Identities=24% Similarity=0.118 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCC---CCCCeEEEeccccccCCCCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~---~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. ...++.|..+|+..+ +++||+|++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 5779999999999999999854 67999999999999999999866421 113678899988765 4789999999
Q ss_pred cccccccCh
Q 027860 202 LVLCSVKDV 210 (217)
Q Consensus 202 ~~l~~~~d~ 210 (217)
.+++|+++.
T Consensus 220 ~vL~H~p~~ 228 (315)
T PLN02585 220 DVLIHYPQD 228 (315)
T ss_pred CEEEecCHH
Confidence 999998764
No 53
>PRK06922 hypothetical protein; Provisional
Probab=99.42 E-value=1.1e-12 Score=116.23 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi~~ 201 (217)
++.+|||||||+|..+..+++ .++.+++|+|+|+.|++.|+++....+ .++.++++|+.++| +++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 688999999999999888875 567899999999999999998876554 36788999999888 888999999999
Q ss_pred cccccc
Q 027860 202 LVLCSV 207 (217)
Q Consensus 202 ~~l~~~ 207 (217)
.++|++
T Consensus 495 ~vLH~L 500 (677)
T PRK06922 495 SILHEL 500 (677)
T ss_pred hHHHhh
Confidence 999875
No 54
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=2.5e-12 Score=101.47 Aligned_cols=98 Identities=33% Similarity=0.427 Sum_probs=80.2
Q ss_pred HHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCC--CeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCC
Q 027860 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (217)
Q Consensus 114 ~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~--~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~ 190 (217)
+...++..+. .++.+|||+|||+|..+..+++... .+++|+|+++.+++.++++.. .. .++.++.+|+..+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~-~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP-LNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC-CCceEEecchhcCCC
Confidence 3344444444 4688999999999999999886444 589999999999999998865 21 478999999999988
Q ss_pred CCCcccEEEeccccccccChhhhcc
Q 027860 191 SDASVDAVVGTLVLCSVKDVDMTLQ 215 (217)
Q Consensus 191 ~~~sfD~Vi~~~~l~~~~d~~~~L~ 215 (217)
++++||+|++.+++++++++...|+
T Consensus 103 ~~~~~D~i~~~~~~~~~~~~~~~l~ 127 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVTDIQKALR 127 (223)
T ss_pred CCCcEEEEEEeeeeCCcccHHHHHH
Confidence 7889999999999999999877665
No 55
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=4.8e-12 Score=99.64 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=73.7
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s 194 (217)
+++.+. .++.+|||||||+|+++..+++. ...+++++|+++++++.|++++...++ .+++++.+|+...+.+.+.
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--~~v~~~~gd~~~~~~~~~~ 145 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--DNVEVIVGDGTLGYEENAP 145 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcccCCCcCCC
Confidence 334443 47889999999999999888763 346999999999999999999988886 4899999999876666689
Q ss_pred ccEEEecccccccc
Q 027860 195 VDAVVGTLVLCSVK 208 (217)
Q Consensus 195 fD~Vi~~~~l~~~~ 208 (217)
||+|++...+.+++
T Consensus 146 fD~I~~~~~~~~~~ 159 (212)
T PRK13942 146 YDRIYVTAAGPDIP 159 (212)
T ss_pred cCEEEECCCcccch
Confidence 99999988776654
No 56
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.38 E-value=2.2e-12 Score=100.83 Aligned_cols=86 Identities=24% Similarity=0.277 Sum_probs=71.3
Q ss_pred HHHhcCCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-cccC--CCCCc
Q 027860 119 FDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIP--VSDAS 194 (217)
Q Consensus 119 ~~~l~~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~-~~lp--~~~~s 194 (217)
...+..++.+|||||||+|.++..+++ .++.+++|+|+|+.|++.|++++...++ +++.++++|+ +.++ +++++
T Consensus 34 ~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~ 111 (202)
T PRK00121 34 AELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL--TNLRLLCGDAVEVLLDMFPDGS 111 (202)
T ss_pred HHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC--CCEEEEecCHHHHHHHHcCccc
Confidence 333334678999999999999999886 3567899999999999999999888776 4799999999 7776 77889
Q ss_pred ccEEEecccccc
Q 027860 195 VDAVVGTLVLCS 206 (217)
Q Consensus 195 fD~Vi~~~~l~~ 206 (217)
||+|++++...+
T Consensus 112 ~D~V~~~~~~p~ 123 (202)
T PRK00121 112 LDRIYLNFPDPW 123 (202)
T ss_pred cceEEEECCCCC
Confidence 999999875543
No 57
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.36 E-value=7.9e-12 Score=98.67 Aligned_cols=89 Identities=22% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s 194 (217)
+++.+. .++.+|||||||+|.++..+++. ...+|+++|+++.+++.|++++...++ .+++++.+|+.......++
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~--~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL--DNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCeEEEECCcccCCcccCC
Confidence 333443 47889999999999999988863 245799999999999999999999887 5899999999876544578
Q ss_pred ccEEEecccccccc
Q 027860 195 VDAVVGTLVLCSVK 208 (217)
Q Consensus 195 fD~Vi~~~~l~~~~ 208 (217)
||+|++.....+++
T Consensus 147 fD~Ii~~~~~~~~~ 160 (215)
T TIGR00080 147 YDRIYVTAAGPKIP 160 (215)
T ss_pred CCEEEEcCCccccc
Confidence 99999988776665
No 58
>PLN03075 nicotianamine synthase; Provisional
Probab=99.36 E-value=8.6e-12 Score=101.79 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHH-cCCCCCCeEEEeccc
Q 027860 111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVA-AGLPLTNFKFLQAVG 185 (217)
Q Consensus 111 ~~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~-~~~~~~~i~~~~~d~ 185 (217)
+......++..+. .++.+|+|||||.|.++..+.. .++.+++|+|+++++++.|++.+.. .++. ++++|.++|+
T Consensus 108 L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da 186 (296)
T PLN03075 108 LSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFFHTADV 186 (296)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEEEECch
Confidence 3333444444443 4778999999998866554332 4677899999999999999999854 7775 6799999999
Q ss_pred cccCCCCCcccEEEeccccccc--cChhhhcc
Q 027860 186 EAIPVSDASVDAVVGTLVLCSV--KDVDMTLQ 215 (217)
Q Consensus 186 ~~lp~~~~sfD~Vi~~~~l~~~--~d~~~~L~ 215 (217)
.+.+-..+.||+|++. +++++ +++.++|+
T Consensus 187 ~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~ 217 (296)
T PLN03075 187 MDVTESLKEYDVVFLA-ALVGMDKEEKVKVIE 217 (296)
T ss_pred hhcccccCCcCEEEEe-cccccccccHHHHHH
Confidence 8874334789999999 88888 56666554
No 59
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.34 E-value=5.8e-12 Score=107.38 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC
Q 027860 111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 111 ~~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp 189 (217)
.......+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+++++.|++++. ++ .+++...|...+
T Consensus 152 q~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l---~v~~~~~D~~~l- 225 (383)
T PRK11705 152 QEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL---PVEIRLQDYRDL- 225 (383)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC---eEEEEECchhhc-
Confidence 3344455666665 5788999999999999999987667799999999999999999873 32 478888888766
Q ss_pred CCCCcccEEEeccccccccC
Q 027860 190 VSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 190 ~~~~sfD~Vi~~~~l~~~~d 209 (217)
+++||+|++..+++|+.+
T Consensus 226 --~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 226 --NGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred --CCCCCEEEEeCchhhCCh
Confidence 478999999999999854
No 60
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.34 E-value=6.4e-12 Score=101.79 Aligned_cols=91 Identities=22% Similarity=0.149 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
..+++|||||||.|+++..++..+...|+|+|++...+-..+....-.+.. ..+.++-.-++.+|. .+.||+|+|..|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 489999999999999999998776778999999987765544333333322 234445467788887 689999999999
Q ss_pred cccccChhhhccC
Q 027860 204 LCSVKDVDMTLQG 216 (217)
Q Consensus 204 l~~~~d~~~~L~e 216 (217)
|.|..+|-.+|++
T Consensus 192 LYHrr~Pl~~L~~ 204 (315)
T PF08003_consen 192 LYHRRSPLDHLKQ 204 (315)
T ss_pred hhccCCHHHHHHH
Confidence 9999999888754
No 61
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.34 E-value=1.3e-11 Score=92.50 Aligned_cols=79 Identities=27% Similarity=0.306 Sum_probs=67.4
Q ss_pred CCeEEEECCCCCcchHHhhhCC-CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 126 AKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~-~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
..+|||+|||.|.++..|++.. ....+|+|+|+.+++.|+.+++..+++ ..|+|.+.|+..-.+..++||+|.--..+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-cceeEEEeeccCCcccccceeEEeecCce
Confidence 3499999999999999999743 335999999999999999999999986 45999999999888888999999865444
Q ss_pred c
Q 027860 205 C 205 (217)
Q Consensus 205 ~ 205 (217)
.
T Consensus 147 D 147 (227)
T KOG1271|consen 147 D 147 (227)
T ss_pred e
Confidence 3
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.33 E-value=1.5e-11 Score=88.10 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=68.9
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-CCCCCc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDAS 194 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~s 194 (217)
++..+. .++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...+. .+++++.+|+... +....+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV--SNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC--CceEEEeccccccChhhcCC
Confidence 344444 35679999999999999999874 457899999999999999999888776 4788999987753 333468
Q ss_pred ccEEEecccccc
Q 027860 195 VDAVVGTLVLCS 206 (217)
Q Consensus 195 fD~Vi~~~~l~~ 206 (217)
||+|++......
T Consensus 89 ~D~v~~~~~~~~ 100 (124)
T TIGR02469 89 PDRVFIGGSGGL 100 (124)
T ss_pred CCEEEECCcchh
Confidence 999999876544
No 63
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.31 E-value=7.8e-12 Score=96.30 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=62.5
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-cccCCCCCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~Vi~~~~ 203 (217)
...-|||||||+|.-+..+. ..+..++|+|+|+.|++.|.++--+ .+++.+|+ +-+||.+++||-+|++.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~e-------gdlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVERELE-------GDLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhhh-------cCeeeeecCCCCCCCCCccceEEEeee
Confidence 46789999999999888886 5568999999999999999974221 24677776 567999999999999888
Q ss_pred cccccC
Q 027860 204 LCSVKD 209 (217)
Q Consensus 204 l~~~~d 209 (217)
+.|+=+
T Consensus 122 vQWLcn 127 (270)
T KOG1541|consen 122 VQWLCN 127 (270)
T ss_pred eeeecc
Confidence 777643
No 64
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.31 E-value=9.6e-12 Score=101.08 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=65.7
Q ss_pred CCCeEEEECCCCCcc----hHHhhhC------CCCeEEEEcCCHHHHHHHHHHHH----HcC------------------
Q 027860 125 KAKKVLEIGIGTGPN----LKYYAAD------TDVQVLGVDPNRKMEKYAQTAAV----AAG------------------ 172 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~----~~~la~~------~~~~v~giD~S~~~l~~a~~~~~----~~~------------------ 172 (217)
++.+|||+|||+|.- +..+++. ...+++|+|+|+.||+.|++..- -.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 457999999999963 3334331 24689999999999999997531 011
Q ss_pred ----CCCCCeEEEeccccccCCCCCcccEEEeccccccccChh
Q 027860 173 ----LPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211 (217)
Q Consensus 173 ----~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~~d~~ 211 (217)
+. .++.|.++|+...++++++||+|+|.++|+|++++.
T Consensus 179 v~~~ir-~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~ 220 (264)
T smart00138 179 VKPELK-ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT 220 (264)
T ss_pred EChHHh-CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH
Confidence 11 368999999999887788999999999999997554
No 65
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=7.6e-12 Score=109.84 Aligned_cols=88 Identities=27% Similarity=0.299 Sum_probs=70.7
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccc--ccCCCCCc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVSDAS 194 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~--~lp~~~~s 194 (217)
+++.+. .++.+|||||||+|.++..+++. ..+++|+|+++.|++.+++... .. +++.++++|+. .+|+++++
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~--~~--~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING--HY--KNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc--cC--CceEEEEecccccccCCCCCC
Confidence 334443 35679999999999999999854 5689999999999998765421 11 57899999996 46788899
Q ss_pred ccEEEeccccccccCh
Q 027860 195 VDAVVGTLVLCSVKDV 210 (217)
Q Consensus 195 fD~Vi~~~~l~~~~d~ 210 (217)
||+|++.++++|+++.
T Consensus 104 fD~I~~~~~l~~l~~~ 119 (475)
T PLN02336 104 VDLIFSNWLLMYLSDK 119 (475)
T ss_pred EEEEehhhhHHhCCHH
Confidence 9999999999999874
No 66
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.28 E-value=3.2e-11 Score=95.54 Aligned_cols=88 Identities=23% Similarity=0.215 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC-CCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~Vi~~~~ 203 (217)
.+.+|||+|||+|.++..+++. +..++|+|+++.+++.+++++...+. .++.+...|+..++.. +++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL--LKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 5789999999999999888754 45799999999999999998877664 2588999999888654 378999999999
Q ss_pred cccccChhhhcc
Q 027860 204 LCSVKDVDMTLQ 215 (217)
Q Consensus 204 l~~~~d~~~~L~ 215 (217)
++|+.++...|+
T Consensus 122 l~~~~~~~~~l~ 133 (224)
T TIGR01983 122 LEHVPDPQAFIR 133 (224)
T ss_pred HHhCCCHHHHHH
Confidence 999999887764
No 67
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.28 E-value=2.9e-11 Score=96.49 Aligned_cols=88 Identities=24% Similarity=0.289 Sum_probs=74.1
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CCCCcccEEEecc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~Vi~~~ 202 (217)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+. .+++...++..++ ..++.||+|++..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 36789999999999999888754 56899999999999999998876664 5788888888775 3457899999999
Q ss_pred ccccccChhhhcc
Q 027860 203 VLCSVKDVDMTLQ 215 (217)
Q Consensus 203 ~l~~~~d~~~~L~ 215 (217)
+++|++++...|+
T Consensus 123 ~l~~~~~~~~~l~ 135 (233)
T PRK05134 123 MLEHVPDPASFVR 135 (233)
T ss_pred HhhccCCHHHHHH
Confidence 9999999877654
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.26 E-value=1.8e-11 Score=95.17 Aligned_cols=80 Identities=28% Similarity=0.269 Sum_probs=68.5
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---CCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~Vi~ 200 (217)
....|||||||+|.++..+++ .+...++|+|+++.+++.|++++...++ .++.++++|+..++ ++++++|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l--~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL--KNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC--CCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 566899999999999999886 5677999999999999999999988887 48999999998764 55679999998
Q ss_pred cccccc
Q 027860 201 TLVLCS 206 (217)
Q Consensus 201 ~~~l~~ 206 (217)
++...|
T Consensus 94 ~~pdpw 99 (194)
T TIGR00091 94 NFPDPW 99 (194)
T ss_pred ECCCcC
Confidence 875444
No 69
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.26 E-value=1.4e-11 Score=97.01 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcC----------CCCCCeEEEeccccccCCC-CC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----------LPLTNFKFLQAVGEAIPVS-DA 193 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~----------~~~~~i~~~~~d~~~lp~~-~~ 193 (217)
++.+|||+|||.|..+.+|+ ..|.+|+|+|+|+.+++.+.+...... ....+++++++|+.+++.. .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA-~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLA-EQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 67899999999999999998 567899999999999998644321100 0014689999999988643 35
Q ss_pred cccEEEeccccccccCh
Q 027860 194 SVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 194 sfD~Vi~~~~l~~~~d~ 210 (217)
.||.|+-..+++|++..
T Consensus 113 ~fD~i~D~~~~~~l~~~ 129 (213)
T TIGR03840 113 PVDAVYDRAALIALPEE 129 (213)
T ss_pred CcCEEEechhhccCCHH
Confidence 79999999988988643
No 70
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.26 E-value=3.7e-11 Score=91.29 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=69.1
Q ss_pred HHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
.+++.+. .++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++... ++++++.+|+..+++++.+|
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchhcCCccccCC
Confidence 3444554 46779999999999999999865 678999999999999999887431 47899999999998877789
Q ss_pred cEEEeccccc
Q 027860 196 DAVVGTLVLC 205 (217)
Q Consensus 196 D~Vi~~~~l~ 205 (217)
|.|+++.-++
T Consensus 79 d~vi~n~Py~ 88 (169)
T smart00650 79 YKVVGNLPYN 88 (169)
T ss_pred CEEEECCCcc
Confidence 9999875443
No 71
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.24 E-value=8.2e-11 Score=90.83 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=68.2
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
++..+. .++.+|||||||+|.++..+++ .+..+++++|+++.+++.|++++...++ .+++++.+|+. .++ .++|
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~--~~i~~~~~d~~-~~~-~~~~ 98 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC--GNIDIIPGEAP-IEL-PGKA 98 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCeEEEecCch-hhc-CcCC
Confidence 334443 4778999999999999998886 4567999999999999999999888776 47899999875 334 3679
Q ss_pred cEEEeccccccc
Q 027860 196 DAVVGTLVLCSV 207 (217)
Q Consensus 196 D~Vi~~~~l~~~ 207 (217)
|+|++.....++
T Consensus 99 D~v~~~~~~~~~ 110 (187)
T PRK08287 99 DAIFIGGSGGNL 110 (187)
T ss_pred CEEEECCCccCH
Confidence 999997765544
No 72
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.24 E-value=7.6e-11 Score=89.71 Aligned_cols=79 Identities=27% Similarity=0.309 Sum_probs=65.2
Q ss_pred CCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
+..+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...++. +++++..|.... +++++||+|+++--
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~--~v~~~~~d~~~~-~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE--NVEVVQSDLFEA-LPDGKFDLIVSNPP 107 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT--TEEEEESSTTTT-CCTTCEEEEEE---
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc--cccccccccccc-ccccceeEEEEccc
Confidence 7789999999999999999874 4557999999999999999999999985 499999998664 34789999999865
Q ss_pred ccc
Q 027860 204 LCS 206 (217)
Q Consensus 204 l~~ 206 (217)
++.
T Consensus 108 ~~~ 110 (170)
T PF05175_consen 108 FHA 110 (170)
T ss_dssp SBT
T ss_pred hhc
Confidence 443
No 73
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.24 E-value=5.8e-11 Score=97.61 Aligned_cols=91 Identities=23% Similarity=0.347 Sum_probs=76.4
Q ss_pred HHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC
Q 027860 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (217)
Q Consensus 113 ~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~ 191 (217)
.|+..+++.-. .+++.|||||||+|.++.+-++.+..+|+++|-| .+.+.|.+.+..+++. ..++++++.++++.+|
T Consensus 47 aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~-~ii~vi~gkvEdi~LP 124 (346)
T KOG1499|consen 47 AYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE-DVITVIKGKVEDIELP 124 (346)
T ss_pred HHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc-ceEEEeecceEEEecC
Confidence 34444544433 5899999999999999999988888899999999 5669999999999986 5699999999998777
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
.+++|+|++-|+=.
T Consensus 125 ~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 125 VEKVDIIVSEWMGY 138 (346)
T ss_pred ccceeEEeehhhhH
Confidence 88999999987543
No 74
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.23 E-value=7.8e-11 Score=92.25 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=69.2
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s 194 (217)
+++.+. .++.+|||||||+|+.+..++. .....|+++|+.+.+++.|++++...++ .++.++.+|...-.-..+.
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--~nv~~~~gdg~~g~~~~ap 141 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--DNVEVVVGDGSEGWPEEAP 141 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--HSEEEEES-GGGTTGGG-S
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--CceeEEEcchhhccccCCC
Confidence 444554 5899999999999999998886 4455799999999999999999999887 5899999998765334578
Q ss_pred ccEEEecccccccc
Q 027860 195 VDAVVGTLVLCSVK 208 (217)
Q Consensus 195 fD~Vi~~~~l~~~~ 208 (217)
||.|++......++
T Consensus 142 fD~I~v~~a~~~ip 155 (209)
T PF01135_consen 142 FDRIIVTAAVPEIP 155 (209)
T ss_dssp EEEEEESSBBSS--
T ss_pred cCEEEEeeccchHH
Confidence 99999999887665
No 75
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.23 E-value=1.9e-11 Score=86.94 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=67.3
Q ss_pred CCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEEeccc
Q 027860 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLV 203 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi~~~~ 203 (217)
|.+|||+|||+|.++..+++....+++|+|+++..++.+++++...++. .+++++++|+.... +++++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4589999999999999988654679999999999999999999998875 57999999998886 77899999999765
Q ss_pred ccc
Q 027860 204 LCS 206 (217)
Q Consensus 204 l~~ 206 (217)
...
T Consensus 80 ~~~ 82 (117)
T PF13659_consen 80 YGP 82 (117)
T ss_dssp TTS
T ss_pred Ccc
Confidence 543
No 76
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.22 E-value=1.2e-10 Score=91.67 Aligned_cols=88 Identities=22% Similarity=0.183 Sum_probs=70.2
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCccc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 196 (217)
++..+. .++.+|||||||+|.++..+++. ..+++++|+++++++.|++++.+.++ .++.+..+|........++||
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD 146 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL--HNVSVRHGDGWKGWPAYAPFD 146 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC--CceEEEECCcccCCCcCCCcC
Confidence 334444 47789999999999998877754 34899999999999999999988887 469999999865422347899
Q ss_pred EEEecccccccc
Q 027860 197 AVVGTLVLCSVK 208 (217)
Q Consensus 197 ~Vi~~~~l~~~~ 208 (217)
+|++...+++++
T Consensus 147 ~I~~~~~~~~~~ 158 (212)
T PRK00312 147 RILVTAAAPEIP 158 (212)
T ss_pred EEEEccCchhhh
Confidence 999988777664
No 77
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.22 E-value=8e-11 Score=99.52 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=72.4
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--CCCCC
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDA 193 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~ 193 (217)
++..+. ..+..+||||||+|.++..+|+ .+...++|+|+++.++..|.+++...++ +++.++++|+..+ .++++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL--~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL--KNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHHHhhhhCCCC
Confidence 333443 3567999999999999999997 5678999999999999999999998887 5899999999765 47889
Q ss_pred cccEEEecccccc
Q 027860 194 SVDAVVGTLVLCS 206 (217)
Q Consensus 194 sfD~Vi~~~~l~~ 206 (217)
++|.|++++...|
T Consensus 192 s~D~I~lnFPdPW 204 (390)
T PRK14121 192 SVEKIFVHFPVPW 204 (390)
T ss_pred ceeEEEEeCCCCc
Confidence 9999998765433
No 78
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.21 E-value=1.3e-10 Score=93.56 Aligned_cols=84 Identities=26% Similarity=0.360 Sum_probs=68.7
Q ss_pred HHHHHhcCCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~~~~~l~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
.+++.+...+.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++ .++.++.+|+.. ++++++|
T Consensus 79 ~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~d~~~-~~~~~~f 155 (251)
T TIGR03534 79 AALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL--DNVTFLQSDWFE-PLPGGKF 155 (251)
T ss_pred HHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEECchhc-cCcCCce
Confidence 344444335568999999999999999863 567999999999999999999988886 379999999876 4567899
Q ss_pred cEEEeccc
Q 027860 196 DAVVGTLV 203 (217)
Q Consensus 196 D~Vi~~~~ 203 (217)
|+|+++--
T Consensus 156 D~Vi~npP 163 (251)
T TIGR03534 156 DLIVSNPP 163 (251)
T ss_pred eEEEECCC
Confidence 99999644
No 79
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.21 E-value=6.2e-11 Score=93.60 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=65.9
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCC-------------CCCeEEEeccccccCC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-------------LTNFKFLQAVGEAIPV 190 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~-------------~~~i~~~~~d~~~lp~ 190 (217)
.++.+|||+|||.|..+.+|+ ..+.+|+|+|+|+.+++.+.+. .++. ..++++.++|+.+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA-~~G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLA-EQGHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHH-hCCCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccCCCc
Confidence 356899999999999999998 4678999999999999987532 2221 1468999999998864
Q ss_pred CC-CcccEEEeccccccccC
Q 027860 191 SD-ASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 191 ~~-~sfD~Vi~~~~l~~~~d 209 (217)
.+ ..||+|+-..+++|++.
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~ 131 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPE 131 (218)
T ss_pred ccCCCeeEEEehHhHhhCCH
Confidence 32 58999999999998864
No 80
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.21 E-value=1.3e-10 Score=89.15 Aligned_cols=79 Identities=20% Similarity=0.130 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.+|||+|||+|.++..++.... +++|+|+++.|++.+++++...+. +++++.+|+...+ .++||+|+++..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKGV--RGKFDVILFNPPY 92 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC---ceEEEEccccccc--CCcccEEEECCCC
Confidence 667899999999999999886443 899999999999999999887763 5788999987654 4589999999887
Q ss_pred ccccC
Q 027860 205 CSVKD 209 (217)
Q Consensus 205 ~~~~d 209 (217)
++.++
T Consensus 93 ~~~~~ 97 (179)
T TIGR00537 93 LPLED 97 (179)
T ss_pred CCCcc
Confidence 76654
No 81
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=1.2e-10 Score=96.87 Aligned_cols=84 Identities=27% Similarity=0.248 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCCCcchHHhhhCC--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
.++.+|||||||+|.++..+++.. ...|+++|+++.+++.|++++...+. .++.++.+|+...+...++||+|++.
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~--~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI--ENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCChhhcccccCCccEEEEC
Confidence 467899999999999999988633 24799999999999999999988886 47899999988775555789999998
Q ss_pred cccccccC
Q 027860 202 LVLCSVKD 209 (217)
Q Consensus 202 ~~l~~~~d 209 (217)
..+.++++
T Consensus 157 ~g~~~ip~ 164 (322)
T PRK13943 157 VGVDEVPE 164 (322)
T ss_pred CchHHhHH
Confidence 87776653
No 82
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.18 E-value=6.5e-11 Score=94.05 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi~~ 201 (217)
...+|||+|||+|..+..++++ ...+++|||+.+.+.+.|++....++|. .+++++++|+.++. ....+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hceeEehhhHHHhhhcccccccCEEEeC
Confidence 5789999999999999999976 5589999999999999999999999997 89999999999885 444579999997
Q ss_pred cc
Q 027860 202 LV 203 (217)
Q Consensus 202 ~~ 203 (217)
=-
T Consensus 123 PP 124 (248)
T COG4123 123 PP 124 (248)
T ss_pred CC
Confidence 53
No 83
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.18 E-value=2.2e-10 Score=89.32 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=66.7
Q ss_pred HHHhc-CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-CCCCCc
Q 027860 119 FDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDAS 194 (217)
Q Consensus 119 ~~~l~-~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~s 194 (217)
+..+. .++.+|||+|||+|.++..+++ .+..+++++|+++.+++.+++++...++. .++.++.+|+.+. +..++.
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEEEechhhhHhhcCCC
Confidence 34444 5788999999999999988775 34568999999999999999999888753 5789999998764 333468
Q ss_pred ccEEEecc
Q 027860 195 VDAVVGTL 202 (217)
Q Consensus 195 fD~Vi~~~ 202 (217)
||+|++..
T Consensus 112 ~D~V~~~~ 119 (198)
T PRK00377 112 FDRIFIGG 119 (198)
T ss_pred CCEEEECC
Confidence 99999854
No 84
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.18 E-value=1.4e-10 Score=98.32 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=69.3
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCC-CCCeEEEeccccccCCCCCc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~-~~~i~~~~~d~~~lp~~~~s 194 (217)
+++.+. ..+.+|||+|||+|.++..+++ .+..+++++|+|+.|++.|+++++.++.. ..+++++..|+... +++.+
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~ 298 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFR 298 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCC
Confidence 455554 2356999999999999999886 56789999999999999999998776642 13678998887653 34568
Q ss_pred ccEEEeccccccc
Q 027860 195 VDAVVGTLVLCSV 207 (217)
Q Consensus 195 fD~Vi~~~~l~~~ 207 (217)
||+|+++--+|..
T Consensus 299 fDlIlsNPPfh~~ 311 (378)
T PRK15001 299 FNAVLCNPPFHQQ 311 (378)
T ss_pred EEEEEECcCcccC
Confidence 9999998666543
No 85
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=1.7e-10 Score=95.03 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=65.7
Q ss_pred HHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEE
Q 027860 119 FDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV 198 (217)
Q Consensus 119 ~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 198 (217)
+..+..++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++. ..+.+..++.. +..+++||+|
T Consensus 153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~~~~~--~~~~~~fDlV 229 (288)
T TIGR00406 153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKLIYLE--QPIEGKADVI 229 (288)
T ss_pred HHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecccc--cccCCCceEE
Confidence 33333477899999999999998887655568999999999999999999888765 45666666533 2345789999
Q ss_pred Eecccccc
Q 027860 199 VGTLVLCS 206 (217)
Q Consensus 199 i~~~~l~~ 206 (217)
+++.....
T Consensus 230 van~~~~~ 237 (288)
T TIGR00406 230 VANILAEV 237 (288)
T ss_pred EEecCHHH
Confidence 99876543
No 86
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.16 E-value=2.3e-10 Score=94.97 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=73.9
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
+++.+. .+..+|||||||+|.++..+++ .+..+++++|. +.+++.+++++.+.++. ++++++.+|+...+++. +
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~~~d~~~~~~~~--~ 216 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKESYPE--A 216 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEEecCccCCCCCC--C
Confidence 444444 4668999999999999999887 46779999998 78999999999888875 67999999998766653 6
Q ss_pred cEEEeccccccccCh
Q 027860 196 DAVVGTLVLCSVKDV 210 (217)
Q Consensus 196 D~Vi~~~~l~~~~d~ 210 (217)
|+|+...++|++++.
T Consensus 217 D~v~~~~~lh~~~~~ 231 (306)
T TIGR02716 217 DAVLFCRILYSANEQ 231 (306)
T ss_pred CEEEeEhhhhcCChH
Confidence 999999999988764
No 87
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3e-10 Score=87.80 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=76.6
Q ss_pred HHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
.+++.+. .++.+|||||||+|+.+..|++ ...+|+.+|+.+...+.|+++++..|+ .|+.++++|...---+...|
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~-l~~~V~siEr~~~L~~~A~~~L~~lg~--~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLAR-LVGRVVSIERIEELAEQARRNLETLGY--ENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHH-HhCeEEEEEEcHHHHHHHHHHHHHcCC--CceEEEECCcccCCCCCCCc
Confidence 3455555 5899999999999999999985 334999999999999999999999997 47999999998763345889
Q ss_pred cEEEeccccccccCh
Q 027860 196 DAVVGTLVLCSVKDV 210 (217)
Q Consensus 196 D~Vi~~~~l~~~~d~ 210 (217)
|.|+.+.+...+|+.
T Consensus 140 D~I~Vtaaa~~vP~~ 154 (209)
T COG2518 140 DRIIVTAAAPEVPEA 154 (209)
T ss_pred CEEEEeeccCCCCHH
Confidence 999999988888763
No 88
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.15 E-value=1.9e-10 Score=94.41 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=64.2
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
++.+|||+|||+|.++..+++ .++.+++|+|+|+.+++.|++++...++. .++.++.+|+... +++++||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~-~~i~~~~~D~~~~-~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE-DRVTLIQSDLFAA-LPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhc-cCCCCccEEEEC
Confidence 457899999999999999986 45679999999999999999999988874 5799999998542 445689999996
No 89
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.2e-10 Score=84.61 Aligned_cols=73 Identities=25% Similarity=0.191 Sum_probs=62.3
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
-.+.+|+|+|||||.++...+--+...|+|+|+++++++.+++++.+.+ .++.|+.+|+..+. ..||.|+++=
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---CccceEEECC
Confidence 3788999999999999988765556789999999999999999998843 58999999999884 5688888753
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.13 E-value=3.6e-10 Score=96.20 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=66.0
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC-CC
Q 027860 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DA 193 (217)
Q Consensus 116 ~~~~~~l~~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~ 193 (217)
+.++..+. ++.+|||+|||+|.++..+++ .++.+++|+|+|+.|++.|++++...+. ++.++++|+....++ .+
T Consensus 243 e~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~---rV~fi~gDl~e~~l~~~~ 318 (423)
T PRK14966 243 EAVLARLP-ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA---RVEFAHGSWFDTDMPSEG 318 (423)
T ss_pred HHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---cEEEEEcchhccccccCC
Confidence 33344433 456999999999999998875 4677999999999999999999987763 689999998654332 45
Q ss_pred cccEEEecc
Q 027860 194 SVDAVVGTL 202 (217)
Q Consensus 194 sfD~Vi~~~ 202 (217)
+||+|+++-
T Consensus 319 ~FDLIVSNP 327 (423)
T PRK14966 319 KWDIIVSNP 327 (423)
T ss_pred CccEEEECC
Confidence 899999965
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=99.13 E-value=3.6e-10 Score=89.69 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=62.6
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
++.+|||+|||+|.++..+++....+++++|+++.+++.+++++...++ ++.++.+|+... +++++||+|+++-
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhh-ccCCCeeEEEECC
Confidence 6789999999999999988865445899999999999999999887764 578888998764 5567999999974
No 92
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.11 E-value=6.6e-10 Score=91.34 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=62.6
Q ss_pred CeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
.+|||+|||+|.++..++. .+..+++|+|+|+.+++.|++++...++. .++.|+++|+.. +++.++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~-~~v~~~~~d~~~-~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE-HRVEFIQSNLFE-PLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhc-cCcCCCccEEEEC
Confidence 6899999999999999886 35579999999999999999999888874 459999999876 3445589999996
No 93
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.11 E-value=3.9e-10 Score=93.98 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=64.1
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCC-CCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~sfD~Vi~~ 201 (217)
++.+|||+|||+|.++..+++ .+.+|+|+|+++.+++.|++++...++ .+++|+++|+..+.. ..+.||+|+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~~l--~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAELGL--TNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 568999999999999999985 457999999999999999999998887 479999999987642 23579999975
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.11 E-value=5.9e-10 Score=92.45 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=62.9
Q ss_pred CeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
.+|||+|||+|.++..++. .+..+++|+|+|+.+++.|++++...++. .+++++.+|+... +++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~-l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE-DRVTLIESDLFAA-LPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CcEEEEECchhhh-CCCCCccEEEEC
Confidence 6899999999999999886 45679999999999999999999888874 4699999998543 345689999996
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.10 E-value=5.5e-10 Score=93.66 Aligned_cols=75 Identities=27% Similarity=0.294 Sum_probs=66.6
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
.++..|||+|||+|.++..++ ..+..++|+|+++.|++.|++++...++. ++.+.++|+..+|+++++||+|+++
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa-~~~~~v~g~Di~~~~~~~a~~nl~~~g~~--~i~~~~~D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAG-LMGAKVIGCDIDWKMVAGARINLEHYGIE--DFFVKRGDATKLPLSSESVDAIATD 255 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHH-HhCCeEEEEcCCHHHHHHHHHHHHHhCCC--CCeEEecchhcCCcccCCCCEEEEC
Confidence 477899999999999887765 45678999999999999999999988874 5889999999999888899999996
No 96
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.09 E-value=7.8e-10 Score=92.96 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=67.1
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
+++.+. ....+|||+|||+|.++..+++. +..+++++|+|+.|++.|+++++..++. .+++..|+... .++.|
T Consensus 188 Ll~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~---~~~~~~D~~~~--~~~~f 262 (342)
T PRK09489 188 LLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE---GEVFASNVFSD--IKGRF 262 (342)
T ss_pred HHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CEEEEcccccc--cCCCc
Confidence 344443 24568999999999999998863 5678999999999999999999888753 46777777543 25789
Q ss_pred cEEEeccccccc
Q 027860 196 DAVVGTLVLCSV 207 (217)
Q Consensus 196 D~Vi~~~~l~~~ 207 (217)
|+|+++..+|+.
T Consensus 263 DlIvsNPPFH~g 274 (342)
T PRK09489 263 DMIISNPPFHDG 274 (342)
T ss_pred cEEEECCCccCC
Confidence 999999888763
No 97
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.09 E-value=2.7e-11 Score=93.87 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=70.7
Q ss_pred HHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C-
Q 027860 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P- 189 (217)
Q Consensus 113 ~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p- 189 (217)
....+++.... ++-.++||+|||||.....+. ....+.+|+|+|++|+++|.++- + .-++.++++..+ +
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg----~---YD~L~~Aea~~Fl~~ 183 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKG----L---YDTLYVAEAVLFLED 183 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhcc----c---hHHHHHHHHHHHhhh
Confidence 34556666665 457899999999999988885 44557999999999999999862 1 123556666543 2
Q ss_pred CCCCcccEEEeccccccccChhhhc
Q 027860 190 VSDASVDAVVGTLVLCSVKDVDMTL 214 (217)
Q Consensus 190 ~~~~sfD~Vi~~~~l~~~~d~~~~L 214 (217)
..++.||+|++..||.++-+.+..+
T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le~~~ 208 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGALEGLF 208 (287)
T ss_pred ccCCcccchhhhhHHHhhcchhhHH
Confidence 4567899999999999998877654
No 98
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.09 E-value=1e-09 Score=83.12 Aligned_cols=94 Identities=16% Similarity=0.240 Sum_probs=75.7
Q ss_pred HHHHHHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC
Q 027860 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (217)
Q Consensus 114 ~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~ 191 (217)
.+-..+..|. .++..++|||||+|..+..++. .+..++++||.++++++..++++++.+. +++.++.+++...--.
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV--DNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC--CcEEEEeccchHhhcC
Confidence 3334556665 6889999999999999999884 6778999999999999999999999996 6999999999876222
Q ss_pred CCcccEEEeccccccccCh
Q 027860 192 DASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~~~d~ 210 (217)
..++|.|+.... ..++..
T Consensus 100 ~~~~daiFIGGg-~~i~~i 117 (187)
T COG2242 100 LPSPDAIFIGGG-GNIEEI 117 (187)
T ss_pred CCCCCEEEECCC-CCHHHH
Confidence 237999999776 444443
No 99
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.08 E-value=6.1e-10 Score=96.97 Aligned_cols=85 Identities=25% Similarity=0.253 Sum_probs=68.5
Q ss_pred HHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----
Q 027860 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---- 188 (217)
Q Consensus 114 ~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l---- 188 (217)
....+++.+. .++.+|||+|||+|.++..+++. ..+++|+|+|+.|++.|++++...++ .+++|+.+|+...
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~--~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL--DNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEeChHHhhhhh
Confidence 3344455554 46789999999999999999854 46899999999999999999988887 4799999998653
Q ss_pred CCCCCcccEEEec
Q 027860 189 PVSDASVDAVVGT 201 (217)
Q Consensus 189 p~~~~sfD~Vi~~ 201 (217)
++.+++||+|++.
T Consensus 362 ~~~~~~fD~Vi~d 374 (443)
T PRK13168 362 PWALGGFDKVLLD 374 (443)
T ss_pred hhhcCCCCEEEEC
Confidence 3455789999874
No 100
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.08 E-value=7.2e-10 Score=89.86 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=65.6
Q ss_pred HHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
.+++.+. .++..|||||||+|.++..+++. +.+++|+|+++.|++.+++++.. . ++++++.+|+..++++ .|
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~--~~v~ii~~D~~~~~~~--~~ 92 (258)
T PRK14896 20 RIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--A--GNVEIIEGDALKVDLP--EF 92 (258)
T ss_pred HHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--C--CCEEEEEeccccCCch--hc
Confidence 3444443 46789999999999999999865 56899999999999999988744 2 5799999999998765 48
Q ss_pred cEEEecccc
Q 027860 196 DAVVGTLVL 204 (217)
Q Consensus 196 D~Vi~~~~l 204 (217)
|.|+++.-.
T Consensus 93 d~Vv~NlPy 101 (258)
T PRK14896 93 NKVVSNLPY 101 (258)
T ss_pred eEEEEcCCc
Confidence 999887543
No 101
>PRK14968 putative methyltransferase; Provisional
Probab=99.07 E-value=1.4e-09 Score=83.57 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...++....+.++.+|.... +.+.+||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence 6779999999999999999865 78999999999999999999888776422288999987664 455689999987654
Q ss_pred c
Q 027860 205 C 205 (217)
Q Consensus 205 ~ 205 (217)
.
T Consensus 101 ~ 101 (188)
T PRK14968 101 L 101 (188)
T ss_pred C
Confidence 3
No 102
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.07 E-value=7e-10 Score=87.15 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--------CCCC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA 193 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~~ 193 (217)
.++.+|||||||+|.++..+++. ....|+|||+++ | ..+ +++.++++|+...+ +.++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 46789999999999999988874 346899999997 2 122 46899999998853 6678
Q ss_pred cccEEEeccccccccC
Q 027860 194 SVDAVVGTLVLCSVKD 209 (217)
Q Consensus 194 sfD~Vi~~~~l~~~~d 209 (217)
+||+|++..++++..+
T Consensus 117 ~~D~V~S~~~~~~~g~ 132 (209)
T PRK11188 117 KVQVVMSDMAPNMSGT 132 (209)
T ss_pred CCCEEecCCCCccCCC
Confidence 9999999887776544
No 103
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.06 E-value=1.1e-09 Score=89.94 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=60.8
Q ss_pred HHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCccc
Q 027860 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 117 ~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 196 (217)
.++..+..++.+|||||||+|.++...++-+..+|+|+|+++.+++.|++++..+++. .++.+ ..... .....||
T Consensus 153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~v--~~~~~--~~~~~~d 227 (295)
T PF06325_consen 153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-DRIEV--SLSED--LVEGKFD 227 (295)
T ss_dssp HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-TCEEE--SCTSC--TCCS-EE
T ss_pred HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-eeEEE--EEecc--cccccCC
Confidence 3445555578899999999999998888766668999999999999999999999986 35543 22222 2348899
Q ss_pred EEEeccc
Q 027860 197 AVVGTLV 203 (217)
Q Consensus 197 ~Vi~~~~ 203 (217)
+|+++-.
T Consensus 228 lvvANI~ 234 (295)
T PF06325_consen 228 LVVANIL 234 (295)
T ss_dssp EEEEES-
T ss_pred EEEECCC
Confidence 9999764
No 104
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=6e-10 Score=90.83 Aligned_cols=83 Identities=23% Similarity=0.278 Sum_probs=62.8
Q ss_pred HHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccE
Q 027860 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA 197 (217)
Q Consensus 118 ~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~ 197 (217)
+++.+..++.+|||+|||+|.++...++-+...++|+|+++.+++.|++++..+++. ..++....+....+ ..+.||+
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-~~~~~~~~~~~~~~-~~~~~Dv 232 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-LLVQAKGFLLLEVP-ENGPFDV 232 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-hhhhcccccchhhc-ccCcccE
Confidence 444444589999999999999999888666668999999999999999999999875 22223333333332 2358999
Q ss_pred EEecc
Q 027860 198 VVGTL 202 (217)
Q Consensus 198 Vi~~~ 202 (217)
|+++-
T Consensus 233 IVANI 237 (300)
T COG2264 233 IVANI 237 (300)
T ss_pred EEehh
Confidence 99975
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=99.04 E-value=7e-10 Score=89.50 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=63.7
Q ss_pred CCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
...+|||+|||+|.++..++.. .+.+++|+|+++.|++.|+++. ++++++++|+..+.. +.+||+|+++--
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIsNPP 135 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVISNPP 135 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEEcCC
Confidence 4579999999999998887653 3579999999999999998763 467899999998753 468999999888
Q ss_pred cccccC
Q 027860 204 LCSVKD 209 (217)
Q Consensus 204 l~~~~d 209 (217)
+.+.+.
T Consensus 136 F~~l~~ 141 (279)
T PHA03411 136 FGKINT 141 (279)
T ss_pred ccccCc
Confidence 877643
No 106
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.03 E-value=2.6e-09 Score=83.10 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=62.1
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-cCCCCCc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDAS 194 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~s 194 (217)
++..+. .++.+|||+|||+|.++..+++ .++.+++++|+++.+++.+++++...+. .+++++.+|+.. ++.....
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~--~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV--KNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCeEEEECchHHHHhhCCCC
Confidence 344444 4678999999999999988875 4567999999999999999999988876 478999999865 2221234
Q ss_pred ccEEEe
Q 027860 195 VDAVVG 200 (217)
Q Consensus 195 fD~Vi~ 200 (217)
+|.|+.
T Consensus 110 ~d~v~~ 115 (196)
T PRK07402 110 PDRVCI 115 (196)
T ss_pred CCEEEE
Confidence 576655
No 107
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.03 E-value=9.8e-11 Score=91.50 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=56.2
Q ss_pred CeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccccc
Q 027860 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS 206 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l~~ 206 (217)
+.++|||||+|..+..++ ....+|+|+|+|+.||+.|++.-...... ....+...+...|--.++|+|+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y~~-t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTYCH-TPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCccccc-CCccccccccccccCCCcceeeehhhhhHHh
Confidence 389999999997666666 44568999999999999998752111110 1112223333333333899999999999999
Q ss_pred ccC
Q 027860 207 VKD 209 (217)
Q Consensus 207 ~~d 209 (217)
+..
T Consensus 113 Fdl 115 (261)
T KOG3010|consen 113 FDL 115 (261)
T ss_pred hch
Confidence 954
No 108
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.03 E-value=9.6e-10 Score=89.81 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=63.0
Q ss_pred HHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
.+++.+. .++.+|||||||+|.++..+++.. .+++|+|+++.|++.+++++.. ++++++.+|+..+++++-.+
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCc
Confidence 3444444 477899999999999999998653 4899999999999999887532 47899999999988654335
Q ss_pred cEEEecc
Q 027860 196 DAVVGTL 202 (217)
Q Consensus 196 D~Vi~~~ 202 (217)
|.|+++-
T Consensus 107 ~~vv~Nl 113 (272)
T PRK00274 107 LKVVANL 113 (272)
T ss_pred ceEEEeC
Confidence 7887764
No 109
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.03 E-value=2.1e-09 Score=89.00 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcchHHhhhCC--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-c
Q 027860 112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I 188 (217)
Q Consensus 112 ~~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~-l 188 (217)
......+...+. ++.+|||+|||+|..+..|++.. +.+|+|+|+|++||+.|++++.... +.-++.++++|+.. +
T Consensus 51 ~~~~~~ia~~~~-~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 51 ERHADEIAAATG-AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPL 128 (301)
T ss_pred HHHHHHHHHhhC-CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchh
Confidence 344444555553 56789999999999999988643 5789999999999999999876543 11357788999876 3
Q ss_pred CCCCC----cccEEEeccccccccC
Q 027860 189 PVSDA----SVDAVVGTLVLCSVKD 209 (217)
Q Consensus 189 p~~~~----sfD~Vi~~~~l~~~~d 209 (217)
++... ...++++...+++++.
T Consensus 129 ~~~~~~~~~~~~~~~~gs~~~~~~~ 153 (301)
T TIGR03438 129 ALPPEPAAGRRLGFFPGSTIGNFTP 153 (301)
T ss_pred hhhcccccCCeEEEEecccccCCCH
Confidence 44333 2334444556777754
No 110
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.03 E-value=1.1e-09 Score=88.35 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=55.8
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
.++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. ..+.+..++ .+||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~~~--------~~fD~Vvani~ 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-LNVYLPQGD--------LKADVIVANIL 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEccCC--------CCcCEEEEcCc
Confidence 378899999999999888777544446999999999999999999887753 233333322 27999998764
Q ss_pred cc
Q 027860 204 LC 205 (217)
Q Consensus 204 l~ 205 (217)
.+
T Consensus 189 ~~ 190 (250)
T PRK00517 189 AN 190 (250)
T ss_pred HH
Confidence 43
No 111
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.03 E-value=1.2e-09 Score=74.59 Aligned_cols=84 Identities=30% Similarity=0.376 Sum_probs=66.7
Q ss_pred eEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCC-CCCcccEEEecccccc
Q 027860 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLVLCS 206 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~sfD~Vi~~~~l~~ 206 (217)
+|||+|||.|.++..+++....+++++|+++.++..+++....... .++.+...|....+. ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999988865677999999999999999864433332 578999999988764 5678999999999888
Q ss_pred -ccChhhh
Q 027860 207 -VKDVDMT 213 (217)
Q Consensus 207 -~~d~~~~ 213 (217)
..+....
T Consensus 79 ~~~~~~~~ 86 (107)
T cd02440 79 LVEDLARF 86 (107)
T ss_pred hhhHHHHH
Confidence 4444443
No 112
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.02 E-value=9.1e-10 Score=86.98 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=67.6
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHH-------c---CCCCCCeEEEeccccccCCC--
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-------A---GLPLTNFKFLQAVGEAIPVS-- 191 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~-------~---~~~~~~i~~~~~d~~~lp~~-- 191 (217)
.++.+||..|||.|..+.+|+ ..|.+|+|+|+|+.+++.+.+.... . .....+++++++|+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA-~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFL-SKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHH-hCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 356899999999999999998 5577899999999999998663200 0 01114789999999999642
Q ss_pred -CCcccEEEeccccccccCh
Q 027860 192 -DASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 192 -~~sfD~Vi~~~~l~~~~d~ 210 (217)
.+.||+|+-...|++++..
T Consensus 121 ~~~~fD~VyDra~~~Alpp~ 140 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPND 140 (226)
T ss_pred ccCCcCeeeeehhHhcCCHH
Confidence 2589999999999999753
No 113
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.02 E-value=1.7e-09 Score=88.99 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=67.6
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCccc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 196 (217)
+++... .++..|||||||+|.++..+++. +.+++++|+++.|++.+++++...+.. ++++++.+|+...+++ .||
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~-~~v~ii~~Dal~~~~~--~~d 103 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLA-SKLEVIEGDALKTEFP--YFD 103 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECCHhhhccc--ccC
Confidence 444444 47789999999999999999854 568999999999999999998766532 5899999999887653 689
Q ss_pred EEEecccccccc
Q 027860 197 AVVGTLVLCSVK 208 (217)
Q Consensus 197 ~Vi~~~~l~~~~ 208 (217)
.|+++. ..++.
T Consensus 104 ~VvaNl-PY~Is 114 (294)
T PTZ00338 104 VCVANV-PYQIS 114 (294)
T ss_pred EEEecC-CcccC
Confidence 888753 34433
No 114
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.01 E-value=2.4e-09 Score=83.29 Aligned_cols=76 Identities=8% Similarity=-0.013 Sum_probs=62.3
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-CCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~Vi~~~ 202 (217)
++.+|||+|||+|.++..++.....+++++|+++.+++.++++++..++ .++.++.+|+... +....+||+|++.=
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~--~~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA--GNARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEEEchHHHHHhhcCCCceEEEECC
Confidence 5679999999999999865445567999999999999999999988886 4799999998764 22245799999854
No 115
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.00 E-value=6.8e-10 Score=86.24 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
....++|||||.|.....+.+..-.+++-+|-|..|++.++.. +..++ .+.+.++|-+.++|.+++||+||++..+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i---~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI---ETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce---EEEEEecchhcccccccchhhhhhhhhh
Confidence 5678999999999999998866666899999999999998864 22332 4678899999999999999999999999
Q ss_pred ccccChhhh
Q 027860 205 CSVKDVDMT 213 (217)
Q Consensus 205 ~~~~d~~~~ 213 (217)
||++|..+.
T Consensus 148 HW~NdLPg~ 156 (325)
T KOG2940|consen 148 HWTNDLPGS 156 (325)
T ss_pred hhhccCchH
Confidence 999997654
No 116
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.97 E-value=2e-09 Score=95.04 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
+.+|||+|||+|.++..+++ .++.+++|+|+|+.+++.|++++...++. .++.++.+|+... ++.++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~~-~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFEN-IEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhhh-CcCCCccEEEECC
Confidence 46899999999999998875 46779999999999999999999888764 5789999997542 3456899999963
No 117
>PHA03412 putative methyltransferase; Provisional
Probab=98.97 E-value=1.2e-09 Score=86.26 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=59.9
Q ss_pred CCCeEEEECCCCCcchHHhhhC----CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~----~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~ 200 (217)
.+.+|||+|||+|.++..+++. ...+++++|+++.+++.|+++. .++.++.+|+...++ +++||+||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEEE
Confidence 4679999999999999887752 3568999999999999999764 357899999987765 468999999
Q ss_pred ccccc
Q 027860 201 TLVLC 205 (217)
Q Consensus 201 ~~~l~ 205 (217)
+==+.
T Consensus 121 NPPY~ 125 (241)
T PHA03412 121 NPPFG 125 (241)
T ss_pred CCCCC
Confidence 75433
No 118
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.97 E-value=6e-09 Score=85.07 Aligned_cols=76 Identities=25% Similarity=0.303 Sum_probs=61.8
Q ss_pred CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
.++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++. .... .++.++.+|+... +++++||+|+++-
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~-~~i~~~~~d~~~~-~~~~~fD~Iv~np 183 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG-ARVEFLQGDWFEP-LPGGRFDLIVSNP 183 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC-CcEEEEEccccCc-CCCCceeEEEECC
Confidence 36779999999999999998863 46799999999999999999887 2222 5789999998543 3457899999963
No 119
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.96 E-value=1.3e-08 Score=88.29 Aligned_cols=115 Identities=23% Similarity=0.314 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcC-----CCCeEEEECCCCCcchHHhhhC-----CCCeEEEEc
Q 027860 86 PPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRG-----KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVD 155 (217)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~VLDiGcG~G~~~~~la~~-----~~~~v~giD 155 (217)
|..+......| ..|+.....|+..-......+.+.... ++..|||||||+|.+....++. ...+|++||
T Consensus 143 Pl~dnL~s~tY-e~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVE 221 (448)
T PF05185_consen 143 PLMDNLESQTY-EVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVE 221 (448)
T ss_dssp TTTS---HHHH-HHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEE
T ss_pred CchhhhccccH-hhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEc
Confidence 33344444444 355554544555433333334444431 2578999999999998776543 246999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 156 PNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 156 ~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
-|+.++...++++...+|. ++|+++.+|++++..+ .++|+||+-++
T Consensus 222 kn~~A~~~l~~~v~~n~w~-~~V~vi~~d~r~v~lp-ekvDIIVSElL 267 (448)
T PF05185_consen 222 KNPNAVVTLQKRVNANGWG-DKVTVIHGDMREVELP-EKVDIIVSELL 267 (448)
T ss_dssp SSTHHHHHHHHHHHHTTTT-TTEEEEES-TTTSCHS-S-EEEEEE---
T ss_pred CCHhHHHHHHHHHHhcCCC-CeEEEEeCcccCCCCC-CceeEEEEecc
Confidence 9999998888887888886 7899999999999765 58999999664
No 120
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=5.3e-09 Score=85.01 Aligned_cols=90 Identities=21% Similarity=0.202 Sum_probs=69.9
Q ss_pred HHHHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCC
Q 027860 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 116 ~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 193 (217)
+.+++.+. ..+.+|||+|||.|.++..+++ .+..+++-+|+|..+++.|++++..+++. +..+...|...- ..+
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--~~~v~~s~~~~~-v~~- 223 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE--NTEVWASNLYEP-VEG- 223 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC--ccEEEEeccccc-ccc-
Confidence 34566665 4456999999999999999997 56789999999999999999999988874 435555555443 333
Q ss_pred cccEEEeccccccccC
Q 027860 194 SVDAVVGTLVLCSVKD 209 (217)
Q Consensus 194 sfD~Vi~~~~l~~~~d 209 (217)
+||+|||+=-+|--.+
T Consensus 224 kfd~IisNPPfh~G~~ 239 (300)
T COG2813 224 KFDLIISNPPFHAGKA 239 (300)
T ss_pred cccEEEeCCCccCCcc
Confidence 9999999877764433
No 121
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=5.5e-09 Score=85.52 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=58.4
Q ss_pred eEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 128 KVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
+|||+|||+|..+..+++ .+...|+|+|+|+.+++.|++++...++ .++.+++.|...- +. +.||+|++|=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~~~dlf~~-~~-~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--VRVLVVQSDLFEP-LR-GKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEEEeeecccc-cC-CceeEEEeCC
Confidence 799999999999999986 4456999999999999999999999987 3566666654433 22 4899999973
No 122
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.95 E-value=8.4e-09 Score=84.37 Aligned_cols=88 Identities=22% Similarity=0.361 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCC
Q 027860 112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (217)
Q Consensus 112 ~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~ 190 (217)
..|.+.+++... ..++.|||||||.|.++.+.++.+..+|++++-| +|.++|++..+.+.+. .+|.++.+.++++.+
T Consensus 163 gTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~-~rItVI~GKiEdieL 240 (517)
T KOG1500|consen 163 GTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA-DRITVIPGKIEDIEL 240 (517)
T ss_pred hHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc-ceEEEccCccccccC
Confidence 345556666554 6889999999999999999888888899999998 7999999999888876 799999999999987
Q ss_pred CCCcccEEEecc
Q 027860 191 SDASVDAVVGTL 202 (217)
Q Consensus 191 ~~~sfD~Vi~~~ 202 (217)
| +++|+||+.-
T Consensus 241 P-Ek~DviISEP 251 (517)
T KOG1500|consen 241 P-EKVDVIISEP 251 (517)
T ss_pred c-hhccEEEecc
Confidence 6 6799999843
No 123
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.92 E-value=8e-09 Score=82.53 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C-
Q 027860 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P- 189 (217)
Q Consensus 114 ~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p- 189 (217)
+...+.... ++++|||||||+|+-+..++. ..+.+++++|+++++++.|++++++.++. .+++++.+|+.+. +
T Consensus 59 ~L~~l~~~~--~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 59 FLSMLVKIM--NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHHh--CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHH
Confidence 333344443 788999999999998887775 34569999999999999999999999986 6899999999764 2
Q ss_pred C----CCCcccEEEec
Q 027860 190 V----SDASVDAVVGT 201 (217)
Q Consensus 190 ~----~~~sfD~Vi~~ 201 (217)
+ +.++||+|+.-
T Consensus 136 l~~~~~~~~fD~VfiD 151 (234)
T PLN02781 136 LLNNDPKPEFDFAFVD 151 (234)
T ss_pred HHhCCCCCCCCEEEEC
Confidence 1 24689999875
No 124
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.92 E-value=1.6e-09 Score=81.66 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=55.1
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCC-CCCeEEEeccccccCCCCCcccEEEeccccccccChhhhccC
Q 027860 152 LGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQG 216 (217)
Q Consensus 152 ~giD~S~~~l~~a~~~~~~~~~~-~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~~d~~~~L~e 216 (217)
+|+|+|++|++.|+++....+.. ..+++|+++|++++|+++++||+|++.+++++++|+...|+|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~e 66 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKE 66 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHH
Confidence 48999999999998776432210 146899999999999999999999999999999999988876
No 125
>PRK04266 fibrillarin; Provisional
Probab=98.90 E-value=7.4e-09 Score=82.21 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=58.1
Q ss_pred CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----CCCCCcccEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV 198 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~sfD~V 198 (217)
.++.+|||+|||+|.++..+++. +...|+|+|+++.|++.+.+++.+. .++.++.+|+... ++. ++||+|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~-~~~D~i 145 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVV-EKVDVI 145 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcc-ccCCEE
Confidence 57889999999999999999863 2458999999999999887776543 4788999998752 233 569999
Q ss_pred Eec
Q 027860 199 VGT 201 (217)
Q Consensus 199 i~~ 201 (217)
++.
T Consensus 146 ~~d 148 (226)
T PRK04266 146 YQD 148 (226)
T ss_pred EEC
Confidence 864
No 126
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.90 E-value=6.9e-09 Score=90.16 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=65.3
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----CCCC
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSD 192 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l----p~~~ 192 (217)
+.+.+. .++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.|++++...++ .+++|+.+|+... ++.+
T Consensus 284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~--~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 284 ALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI--ANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC--CceEEEeCCHHHHHHHHHhcC
Confidence 344443 35679999999999999999854 46899999999999999999988886 5899999999763 2345
Q ss_pred CcccEEEe
Q 027860 193 ASVDAVVG 200 (217)
Q Consensus 193 ~sfD~Vi~ 200 (217)
++||+|+.
T Consensus 361 ~~~D~vi~ 368 (431)
T TIGR00479 361 QIPDVLLL 368 (431)
T ss_pred CCCCEEEE
Confidence 67999986
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.90 E-value=1.2e-08 Score=79.32 Aligned_cols=76 Identities=28% Similarity=0.405 Sum_probs=64.2
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C--CCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~sfD~Vi~ 200 (217)
....+||||||.|.++..+|+ .++..++|||+....+..+.+++...++ +|+.++.+|+..+ + ++++++|-|+.
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHHhhcccCCchheEEE
Confidence 444899999999999999986 7889999999999999999999999887 5999999999883 3 66799999987
Q ss_pred cc
Q 027860 201 TL 202 (217)
Q Consensus 201 ~~ 202 (217)
++
T Consensus 95 ~F 96 (195)
T PF02390_consen 95 NF 96 (195)
T ss_dssp ES
T ss_pred eC
Confidence 66
No 128
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.89 E-value=1.4e-08 Score=84.26 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHc-CCCCCCeEEEe-ccccccC----CCCCcccE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQ-AVGEAIP----VSDASVDA 197 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~-~~~~~~i~~~~-~d~~~lp----~~~~sfD~ 197 (217)
.+.++||||||+|.....++. ..+.+++|+|+++.+++.|+++++.+ ++. .++.++. .|...+. .+++.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccchhhhhhcccccCCceEE
Confidence 568999999999977766664 45779999999999999999999988 675 5777754 3433332 24578999
Q ss_pred EEeccccc
Q 027860 198 VVGTLVLC 205 (217)
Q Consensus 198 Vi~~~~l~ 205 (217)
|+|+==++
T Consensus 193 ivcNPPf~ 200 (321)
T PRK11727 193 TLCNPPFH 200 (321)
T ss_pred EEeCCCCc
Confidence 99986444
No 129
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=4.5e-09 Score=76.08 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=66.5
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
..+++++|+|||.|.+....+-.....++|+|+.+++++.+.+++++..+ +++++++|+..+-+..+.||.++.+--
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv---qidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV---QIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh---hhheeeeeccchhccCCeEeeEEecCC
Confidence 48999999999999998665544556799999999999999999998886 578999999998777789999998654
Q ss_pred c
Q 027860 204 L 204 (217)
Q Consensus 204 l 204 (217)
+
T Consensus 124 F 124 (185)
T KOG3420|consen 124 F 124 (185)
T ss_pred C
Confidence 3
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=1.3e-08 Score=88.66 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=63.7
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~ 200 (217)
.++.+|||+|||+|..+..+++ ....+++++|+++.+++.+++++...|+ .+++++.+|+..++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--TIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--CeEEEEeCcccccc-cCCCCCEEEE
Confidence 4678999999999998887775 2346899999999999999999999887 47999999998875 4578999995
No 131
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.88 E-value=9.6e-09 Score=87.96 Aligned_cols=77 Identities=19% Similarity=0.107 Sum_probs=64.0
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--C--CCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--V--SDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~~sfD~Vi~ 200 (217)
++.+|||+|||+|.++...+.....+++++|+|+.+++.|++++..+++...+++++++|+.... + ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 67899999999999987766555568999999999999999999998874347899999997752 2 2468999997
Q ss_pred c
Q 027860 201 T 201 (217)
Q Consensus 201 ~ 201 (217)
.
T Consensus 300 D 300 (396)
T PRK15128 300 D 300 (396)
T ss_pred C
Confidence 5
No 132
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.86 E-value=2.1e-08 Score=80.93 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=57.9
Q ss_pred CCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C-CCCCcccEEEecc
Q 027860 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGTL 202 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~sfD~Vi~~~ 202 (217)
+.+|||+|||+|.++..+++ .++.+++|+|+|+.+++.|++++...+ ++++.+|+... + ...++||+|+++-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 45899999999999999875 456789999999999999999987654 36888888653 2 1135799999874
No 133
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.86 E-value=1.3e-08 Score=82.23 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=62.8
Q ss_pred HHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
.+++.+. .++.+|||||||+|.++..+++.. ..++++|+++.+++.+++++.. . ++++++.+|+..++++ .|
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~--~~v~v~~~D~~~~~~~--~~ 92 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--Y--ERLEVIEGDALKVDLP--DF 92 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--C--CcEEEEECchhcCChh--Hc
Confidence 3444444 467899999999999999998643 5799999999999999987633 1 5789999999998865 46
Q ss_pred c---EEEeccc
Q 027860 196 D---AVVGTLV 203 (217)
Q Consensus 196 D---~Vi~~~~ 203 (217)
| +|+++.-
T Consensus 93 d~~~~vvsNlP 103 (253)
T TIGR00755 93 PKQLKVVSNLP 103 (253)
T ss_pred CCcceEEEcCC
Confidence 6 7776654
No 134
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.85 E-value=1.8e-08 Score=85.91 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=62.2
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCC-CCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~sfD~Vi~~ 201 (217)
++.+|||+|||+|.++..++. .+.+++|+|+++.+++.|+++++..++ .+++|+.+|+..... ...+||+|+..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~-~~~~v~~vE~~~~av~~a~~N~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG-PDTQLTGIEIESEAIACAQQSAQMLGL--DNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh-cCCeEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 567999999999999999984 457899999999999999999998887 489999999976531 12469999874
No 135
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=2.2e-08 Score=87.02 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDA 197 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~ 197 (217)
.++.+|||+|||+|..+..+++. ....++++|+++.+++.+++++...|+. ++.++.+|+..++ +..++||.
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK--SIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC--eEEEEeCChhhcccccccccccCCE
Confidence 47889999999999999988863 3468999999999999999999999974 7999999998876 44678999
Q ss_pred EEe
Q 027860 198 VVG 200 (217)
Q Consensus 198 Vi~ 200 (217)
|++
T Consensus 329 Vl~ 331 (434)
T PRK14901 329 ILL 331 (434)
T ss_pred EEE
Confidence 996
No 136
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.84 E-value=1.7e-08 Score=87.52 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=65.1
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CCCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~Vi~ 200 (217)
.++.+|||+|||+|..+..++.. ...+++++|+++.+++.+++++...|+. ++.+.++|+..++ +.+++||.|++
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~--~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS--SIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhhhhhhhhccCCEEEE
Confidence 47789999999999999888763 4579999999999999999999998874 6899999998876 45678999996
No 137
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.84 E-value=1.3e-08 Score=82.79 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~ 200 (217)
.++.+|||+|||+|..+..+++. ....++++|+++.+++.++++++..++ .++.++..|+..++...+.||.|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~--~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV--LNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC--CcEEEecCCHHHhhhhccCCCEEEE
Confidence 47789999999999999888762 245899999999999999999999887 4799999999887655567999986
No 138
>PRK04457 spermidine synthase; Provisional
Probab=98.83 E-value=1.4e-08 Score=82.43 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=61.3
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-CCCCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~Vi~~ 201 (217)
++.+|||||||+|.++..+++ .+..+++++|+++.+++.|++.+...+.. ++++++.+|+... +-..++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-ERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 567899999999999998876 46779999999999999999987544332 5799999998654 2223689999974
No 139
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.82 E-value=1.9e-08 Score=92.21 Aligned_cols=77 Identities=19% Similarity=0.100 Sum_probs=65.0
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CCCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~Vi~~ 201 (217)
++++|||+|||+|.++..+++.+..+|+++|+|+.+++.|++++..+++...+++++++|+.+.. -...+||+||+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 67899999999999999998765557999999999999999999998874347999999986642 114689999985
No 140
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=3.2e-08 Score=85.86 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=62.9
Q ss_pred CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi~ 200 (217)
.++.+|||+|||+|..+..+++. .+..++++|+++.+++.+++++...|+ ++.++.+|+..++ +..++||.|++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL---KATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEcCcccchhhcccCCCCEEEE
Confidence 47889999999999999998863 336899999999999999999998886 3689999998764 34578999994
No 141
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.80 E-value=4.8e-08 Score=76.37 Aligned_cols=89 Identities=20% Similarity=0.239 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 111 VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
...+...+.... ..++|||||+++|+-+.+++.. .+.+++.+|++++..+.|++.+.+.|+. .+++++.+|+.+.
T Consensus 33 ~g~lL~~l~~~~--~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~~gda~~~ 109 (205)
T PF01596_consen 33 TGQLLQMLVRLT--RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHHHH--T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEEES-HHHH
T ss_pred HHHHHHHHHHhc--CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEEEeccHhh
Confidence 344455555555 7889999999999999999963 4679999999999999999999999986 7899999999763
Q ss_pred -C-----CCCCcccEEEecc
Q 027860 189 -P-----VSDASVDAVVGTL 202 (217)
Q Consensus 189 -p-----~~~~sfD~Vi~~~ 202 (217)
+ -..++||+|+.-.
T Consensus 110 l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEES
T ss_pred HHHHHhccCCCceeEEEEcc
Confidence 2 1135899999743
No 142
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.79 E-value=3.3e-08 Score=82.65 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcC---------CCCCCeEEEeccccccC----CC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG---------LPLTNFKFLQAVGEAIP----VS 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~---------~~~~~i~~~~~d~~~lp----~~ 191 (217)
++.+|||+|||.|.-+..+....-..++|+|++...|+.|+++..+.. .. -...|+.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~-f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD-FIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC-CEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc-chhheeccccccchhhhhcc
Confidence 788999999999987777776667799999999999999999983211 11 13567888775431 33
Q ss_pred C--CcccEEEeccccccccChh
Q 027860 192 D--ASVDAVVGTLVLCSVKDVD 211 (217)
Q Consensus 192 ~--~sfD~Vi~~~~l~~~~d~~ 211 (217)
+ ..||+|-|.++||+.=..+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese 162 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESE 162 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSH
T ss_pred ccCCCcceeehHHHHHHhcCCH
Confidence 3 4999999999999875443
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=5.6e-08 Score=84.79 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=64.5
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi 199 (217)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++...|+. ++.++++|+..++ ++ ++||+|+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT--NIETKALDARKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCCcccccchhc-ccCCEEE
Confidence 46789999999999999988863 4569999999999999999999998874 6999999998763 33 7899999
Q ss_pred ec
Q 027860 200 GT 201 (217)
Q Consensus 200 ~~ 201 (217)
+.
T Consensus 326 ~D 327 (444)
T PRK14902 326 VD 327 (444)
T ss_pred Ec
Confidence 74
No 144
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.75 E-value=2.4e-08 Score=78.80 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=68.0
Q ss_pred HHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHH-cC---------CCCCCeEEEec
Q 027860 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-AG---------LPLTNFKFLQA 183 (217)
Q Consensus 115 ~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~-~~---------~~~~~i~~~~~ 183 (217)
...+++.+. .++.+||..|||.|..+.+|++ .|.+|+|+|+|+.+++.+.+.... .. .+..+|++.++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 333444444 4667999999999999999995 477999999999999998543211 00 11246789999
Q ss_pred cccccCCCC-CcccEEEeccccccccC
Q 027860 184 VGEAIPVSD-ASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 184 d~~~lp~~~-~sfD~Vi~~~~l~~~~d 209 (217)
|+..++-.. ++||+|+-...|+-++.
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp 131 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPP 131 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-G
T ss_pred ccccCChhhcCCceEEEEecccccCCH
Confidence 999986433 58999999999998864
No 145
>PLN02476 O-methyltransferase
Probab=98.75 E-value=6.3e-08 Score=78.76 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=64.8
Q ss_pred CCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C-C----CCCccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V----SDASVD 196 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p-~----~~~sfD 196 (217)
+.++|||||+|+|+.+.+++.. .+.+++++|.+++..+.|++.+++.|+. .+++++.+|+.+. + + .+++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 7889999999999999999862 3568999999999999999999999986 6899999998663 2 2 136899
Q ss_pred EEEec
Q 027860 197 AVVGT 201 (217)
Q Consensus 197 ~Vi~~ 201 (217)
+|+.-
T Consensus 197 ~VFID 201 (278)
T PLN02476 197 FAFVD 201 (278)
T ss_pred EEEEC
Confidence 99874
No 146
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.75 E-value=6.4e-08 Score=74.20 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=60.9
Q ss_pred CCCCeEEEECCCCCcchHHhhh-CCCC---------eEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA-DTDV---------QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~-~~~~---------~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 193 (217)
.++..|||--||+|.++...+. .... +++|.|+++.+++.|++++...++. ..+.+.+.|+..+++.++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-DYIDFIQWDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-GGEEEEE--GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-CceEEEecchhhcccccC
Confidence 3678999999999999877653 2222 3899999999999999999999986 678999999999998888
Q ss_pred cccEEEecc
Q 027860 194 SVDAVVGTL 202 (217)
Q Consensus 194 sfD~Vi~~~ 202 (217)
++|+|+++-
T Consensus 106 ~~d~IvtnP 114 (179)
T PF01170_consen 106 SVDAIVTNP 114 (179)
T ss_dssp BSCEEEEE-
T ss_pred CCCEEEECc
Confidence 999999864
No 147
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.74 E-value=4.5e-08 Score=77.63 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=55.4
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCe-EEEecccccc-----CCCCCcccE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGEAI-----PVSDASVDA 197 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i-~~~~~d~~~l-----p~~~~sfD~ 197 (217)
.++..|||+|||+|.++..+++.+..+|+|+|++++|+....+. . +++ .+...|+..+ +..-..+|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~---~----~~v~~~~~~ni~~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ---D----ERVKVLERTNIRYVTPADIFPDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc---C----CCeeEeecCCcccCCHhHcCCCceeeeE
Confidence 37789999999999999999876567899999999888762221 1 122 2333344332 222247898
Q ss_pred EEeccccccccChhhhcc
Q 027860 198 VVGTLVLCSVKDVDMTLQ 215 (217)
Q Consensus 198 Vi~~~~l~~~~d~~~~L~ 215 (217)
++++..+ -+++....|+
T Consensus 147 sfiS~~~-~l~~i~~~l~ 163 (228)
T TIGR00478 147 SFISLIS-ILPELDLLLN 163 (228)
T ss_pred EEeehHh-HHHHHHHHhC
Confidence 8887654 3555555544
No 148
>PRK00811 spermidine synthase; Provisional
Probab=98.74 E-value=5.4e-08 Score=79.94 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=63.4
Q ss_pred CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcC---CCCCCeEEEecccccc-CCCCCcccEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG---LPLTNFKFLQAVGEAI-PVSDASVDAV 198 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~---~~~~~i~~~~~d~~~l-p~~~~sfD~V 198 (217)
..+++||+||||.|..+..+.+. ...+|+++|+++.+++.|++.+...+ +..++++++.+|+... ...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 36779999999999999998875 34689999999999999999875432 1236899999998764 2345789999
Q ss_pred Eecc
Q 027860 199 VGTL 202 (217)
Q Consensus 199 i~~~ 202 (217)
++..
T Consensus 155 i~D~ 158 (283)
T PRK00811 155 IVDS 158 (283)
T ss_pred EECC
Confidence 9854
No 149
>PTZ00146 fibrillarin; Provisional
Probab=98.72 E-value=4.9e-08 Score=79.68 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=56.7
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---CCCCCcccEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAV 198 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~sfD~V 198 (217)
.++.+|||+|||+|.++..+++. ....|+++|+++.|++...+.+... +++.++..|+... .+..++||+|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEE
Confidence 47889999999999999999873 3458999999987665544443322 4788999998642 2234589999
Q ss_pred Eeccc
Q 027860 199 VGTLV 203 (217)
Q Consensus 199 i~~~~ 203 (217)
++...
T Consensus 207 ~~Dva 211 (293)
T PTZ00146 207 FADVA 211 (293)
T ss_pred EEeCC
Confidence 98764
No 150
>PRK04148 hypothetical protein; Provisional
Probab=98.71 E-value=4.5e-08 Score=70.86 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=56.3
Q ss_pred CCCeEEEECCCCCc-chHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC-CCcccEEEecc
Q 027860 125 KAKKVLEIGIGTGP-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~G~-~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~Vi~~~ 202 (217)
++.+|||||||.|. .+..|+ ..+.+|+++|+++..++.+++. .++++++|+.+..+. -..+|+|++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 56789999999996 666776 5578999999999999988775 357999999877643 35689999876
Q ss_pred ccc
Q 027860 203 VLC 205 (217)
Q Consensus 203 ~l~ 205 (217)
-..
T Consensus 86 pp~ 88 (134)
T PRK04148 86 PPR 88 (134)
T ss_pred CCH
Confidence 433
No 151
>PLN02672 methionine S-methyltransferase
Probab=98.71 E-value=4.4e-08 Score=92.31 Aligned_cols=77 Identities=26% Similarity=0.258 Sum_probs=61.9
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCC--------------CCCeEEEeccccccC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP--------------LTNFKFLQAVGEAIP 189 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~--------------~~~i~~~~~d~~~lp 189 (217)
++.+|||+|||+|.++..+++ .+..+++|+|+|+.+++.|++++..+++. ..+++|+++|+....
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 356899999999999999986 34579999999999999999999875431 136899999987653
Q ss_pred CCC--CcccEEEecc
Q 027860 190 VSD--ASVDAVVGTL 202 (217)
Q Consensus 190 ~~~--~sfD~Vi~~~ 202 (217)
.+ ..||+||++=
T Consensus 198 -~~~~~~fDlIVSNP 211 (1082)
T PLN02672 198 -RDNNIELDRIVGCI 211 (1082)
T ss_pred -cccCCceEEEEECC
Confidence 22 3699999963
No 152
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.71 E-value=8.9e-08 Score=83.08 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=66.2
Q ss_pred CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCC--CCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~sfD~Vi~ 200 (217)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.++++++..|+. ..+.+..+|....++ ++++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCEEEE
Confidence 47889999999999999888863 3568999999999999999999998874 244557777765543 5678999985
Q ss_pred ------ccccccccC
Q 027860 201 ------TLVLCSVKD 209 (217)
Q Consensus 201 ------~~~l~~~~d 209 (217)
..++++.++
T Consensus 316 DaPcSg~G~~~~~p~ 330 (426)
T TIGR00563 316 DAPCSATGVIRRHPD 330 (426)
T ss_pred cCCCCCCcccccCcc
Confidence 234555554
No 153
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.70 E-value=6.2e-08 Score=74.83 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=51.7
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--------CCCC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA 193 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~~ 193 (217)
.++.+|||+|||+|.++..+++. ...+++|+|+++.+ .. +++.++++|+.+.+ ++++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~--~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI--ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC--CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 47889999999999998888753 34589999999854 11 46788888887643 4567
Q ss_pred cccEEEeccc
Q 027860 194 SVDAVVGTLV 203 (217)
Q Consensus 194 sfD~Vi~~~~ 203 (217)
+||+|++...
T Consensus 98 ~~D~V~~~~~ 107 (188)
T TIGR00438 98 KVDVVMSDAA 107 (188)
T ss_pred CccEEEcCCC
Confidence 8999998653
No 154
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.70 E-value=1.5e-07 Score=72.80 Aligned_cols=75 Identities=7% Similarity=-0.008 Sum_probs=60.9
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C-C-CCC-cccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V-SDA-SVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p-~-~~~-sfD~Vi~ 200 (217)
.+.+|||++||+|.++..++......++++|.++.+++.++++++..++. .+++++.+|+... . + ... .||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 67899999999999999998766668999999999999999999888874 4789999999543 2 2 122 3677765
No 155
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=2e-07 Score=74.45 Aligned_cols=90 Identities=19% Similarity=0.321 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhc----CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027860 112 AGYKSQLFDNLR----GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186 (217)
Q Consensus 112 ~~~~~~~~~~l~----~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~ 186 (217)
.++++.+++.++ ..+..|||+|||+|..+..++.. +...+++||.|+.++..|.+++....+. ..+.++.-+.+
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~~~me 209 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEecccc
Confidence 344444444443 35567999999999999988863 4668999999999999999999888876 56776654443
Q ss_pred c-----cCCCCCcccEEEecc
Q 027860 187 A-----IPVSDASVDAVVGTL 202 (217)
Q Consensus 187 ~-----lp~~~~sfD~Vi~~~ 202 (217)
. .+...+.+|+++++=
T Consensus 210 ~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred cccccccccccCceeEEecCC
Confidence 2 235568999999974
No 156
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.67 E-value=1.8e-07 Score=73.35 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcchHHhhhC-C-CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEe-ccccc
Q 027860 111 VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ-AVGEA 187 (217)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~-~-~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~-~d~~~ 187 (217)
...+...++... ..++|||||.+.|+-+.+++.. + ..+++.||+++++.+.|++++++.|+. +++.++. +|+.+
T Consensus 47 ~g~~L~~L~~~~--~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~gdal~ 123 (219)
T COG4122 47 TGALLRLLARLS--GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLGGDALD 123 (219)
T ss_pred HHHHHHHHHHhc--CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEecCcHHH
Confidence 344445455554 7899999999999999999863 2 568999999999999999999999997 5688888 47655
Q ss_pred cC--CCCCcccEEEec
Q 027860 188 IP--VSDASVDAVVGT 201 (217)
Q Consensus 188 lp--~~~~sfD~Vi~~ 201 (217)
.- +..++||+|+.-
T Consensus 124 ~l~~~~~~~fDliFID 139 (219)
T COG4122 124 VLSRLLDGSFDLVFID 139 (219)
T ss_pred HHHhccCCCccEEEEe
Confidence 42 346899999873
No 157
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=7e-08 Score=75.69 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=60.0
Q ss_pred CeEEEECCCCCcchHHhhh-CC--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc----cCCCCCcccEEE
Q 027860 127 KKVLEIGIGTGPNLKYYAA-DT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSDASVDAVV 199 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~-~~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~sfD~Vi 199 (217)
.+||+||||.|.....+.+ .+ ...++++|.|+.+++..++...... .++...+.|+.. -|...+++|+|+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccchhccCCCCcCccceEE
Confidence 3899999999998888776 33 3789999999999999988753332 344444444432 246779999999
Q ss_pred ecccccccc
Q 027860 200 GTLVLCSVK 208 (217)
Q Consensus 200 ~~~~l~~~~ 208 (217)
++++|..++
T Consensus 150 ~IFvLSAi~ 158 (264)
T KOG2361|consen 150 LIFVLSAIH 158 (264)
T ss_pred EEEEEeccC
Confidence 999998875
No 158
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.65 E-value=1.9e-07 Score=74.86 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=62.2
Q ss_pred CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
.+..+|||||+|.|.++..+++ .++.+++..|+ +..++.+++ . ++++++.+|+. -+++. +|+|+..+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~---~rv~~~~gd~f-~~~P~--~D~~~l~~ 166 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----A---DRVEFVPGDFF-DPLPV--ADVYLLRH 166 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----T---TTEEEEES-TT-TCCSS--ESEEEEES
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----c---cccccccccHH-hhhcc--ccceeeeh
Confidence 4567899999999999999886 78889999999 788888887 1 68999999998 56665 99999999
Q ss_pred ccccccChh
Q 027860 203 VLCSVKDVD 211 (217)
Q Consensus 203 ~l~~~~d~~ 211 (217)
+||+++|.+
T Consensus 167 vLh~~~d~~ 175 (241)
T PF00891_consen 167 VLHDWSDED 175 (241)
T ss_dssp SGGGS-HHH
T ss_pred hhhhcchHH
Confidence 999998754
No 159
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.64 E-value=1e-07 Score=78.29 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=71.3
Q ss_pred HHHHHhc-CCCCeEEEECCCCCcchHHhhhCC--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CC
Q 027860 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VS 191 (217)
Q Consensus 117 ~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~ 191 (217)
.+++.+. .++..+||.+||.|..+..+++.. ...|+|+|.++.|++.|++++.+ . .++.++++|..++. ++
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHH
Confidence 3444444 467899999999999999998743 47899999999999999998755 2 58999999998874 22
Q ss_pred CC--cccEEEeccccc--cccChhhh
Q 027860 192 DA--SVDAVVGTLVLC--SVKDVDMT 213 (217)
Q Consensus 192 ~~--sfD~Vi~~~~l~--~~~d~~~~ 213 (217)
++ +||.|+...++. .+.++++-
T Consensus 86 ~~~~~vDgIl~DLGvSs~Qld~~~RG 111 (296)
T PRK00050 86 EGLGKVDGILLDLGVSSPQLDDAERG 111 (296)
T ss_pred cCCCccCEEEECCCccccccCCCcCC
Confidence 22 799999977554 34455443
No 160
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.63 E-value=2.3e-07 Score=72.07 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=59.7
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
++..|||+-||.|.++..+++ ..+..|+++|+++.+++..+++++.+++. ..+....+|+..++. ...||-|++..-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE-NRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T-TTEEEEES-GGG----TT-EEEEEE--T
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC-CeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 788999999999999999987 56678999999999999999999999987 679999999998854 789999999763
No 161
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.61 E-value=1.5e-07 Score=79.62 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=52.8
Q ss_pred CCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
+.+|||++||+|.++..+++. ...|+|+|+++.+++.|++++...++ .+++|+.+|+..+
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~--~~v~~~~~d~~~~ 257 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI--DNVQIIRMSAEEF 257 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEEcCHHHH
Confidence 347999999999999988854 35899999999999999999998887 4799999999774
No 162
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.60 E-value=5.5e-07 Score=72.20 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=64.1
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC---
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--- 191 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~--- 191 (217)
++..+. .+|.+|||.|.|+|.++..|+. .+..+|+..|+.++.++.|+++++..++. .++++.+.|+....|.
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG--STT-
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeEecceecccccccc
Confidence 444454 6999999999999999999986 56779999999999999999999999986 6899999999765453
Q ss_pred CCcccEEEe
Q 027860 192 DASVDAVVG 200 (217)
Q Consensus 192 ~~sfD~Vi~ 200 (217)
+..||.|+.
T Consensus 111 ~~~~DavfL 119 (247)
T PF08704_consen 111 ESDFDAVFL 119 (247)
T ss_dssp TTSEEEEEE
T ss_pred cCcccEEEE
Confidence 367999865
No 163
>PLN02366 spermidine synthase
Probab=98.60 E-value=1.9e-07 Score=77.45 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCC-CeEEEEcCCHHHHHHHHHHHHHc--CCCCCCeEEEeccccccC--CCCCcccEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIP--VSDASVDAV 198 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~-~~v~giD~S~~~l~~a~~~~~~~--~~~~~~i~~~~~d~~~lp--~~~~sfD~V 198 (217)
..+++||+||||.|..+..+++.+. .+++.+|+++.+++.|++.+... ++..++++++.+|+...- .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3678999999999999999987654 58999999999999999987543 344468999999986541 235689999
Q ss_pred Eecc
Q 027860 199 VGTL 202 (217)
Q Consensus 199 i~~~ 202 (217)
++-.
T Consensus 170 i~D~ 173 (308)
T PLN02366 170 IVDS 173 (308)
T ss_pred EEcC
Confidence 9854
No 164
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.60 E-value=1.7e-07 Score=79.57 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=52.7
Q ss_pred CCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
+.+|||++||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++|+.+|+...
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~--~~v~~~~~d~~~~ 266 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI--DNVQIIRMSAEEF 266 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEEECCHHHH
Confidence 357999999999999988854 45899999999999999999988887 4899999999764
No 165
>PRK03612 spermidine synthase; Provisional
Probab=98.60 E-value=1.3e-07 Score=83.91 Aligned_cols=79 Identities=23% Similarity=0.212 Sum_probs=62.4
Q ss_pred CCCeEEEECCCCCcchHHhhhCCC-CeEEEEcCCHHHHHHHHHH--HHH---cCCCCCCeEEEecccccc-CCCCCcccE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTA--AVA---AGLPLTNFKFLQAVGEAI-PVSDASVDA 197 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~-~~v~giD~S~~~l~~a~~~--~~~---~~~~~~~i~~~~~d~~~l-p~~~~sfD~ 197 (217)
++++|||||||+|..+..+.+.+. .+++++|+++++++.|++. +.. ..+..++++++.+|+... ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 678999999999999999887655 6999999999999999983 222 123336899999999874 233478999
Q ss_pred EEeccc
Q 027860 198 VVGTLV 203 (217)
Q Consensus 198 Vi~~~~ 203 (217)
|++...
T Consensus 377 Ii~D~~ 382 (521)
T PRK03612 377 IIVDLP 382 (521)
T ss_pred EEEeCC
Confidence 999753
No 166
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.59 E-value=1.5e-07 Score=76.77 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=72.0
Q ss_pred HHHHHH-HHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCC----CeEEEeccc
Q 027860 111 VAGYKS-QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVG 185 (217)
Q Consensus 111 ~~~~~~-~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~----~i~~~~~d~ 185 (217)
++.|++ .+++....++..+||+|||.|.-+..+-+..-..++|+||++..++.|+++....--... .+.|+.+|.
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 344443 345555568889999999999888777666667899999999999999998755332111 257888887
Q ss_pred cc------cCCCCCcccEEEeccccccc
Q 027860 186 EA------IPVSDASVDAVVGTLVLCSV 207 (217)
Q Consensus 186 ~~------lp~~~~sfD~Vi~~~~l~~~ 207 (217)
.. +++++.+||+|-|-+++|+-
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYa 209 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYA 209 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeee
Confidence 43 34566669999999999975
No 167
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.58 E-value=3e-07 Score=73.84 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C
Q 027860 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P 189 (217)
Q Consensus 113 ~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p 189 (217)
.+...++... +.++|||||+++|+-+.+++. ..+.+++.+|++++..+.|++.+++.|+. .+|+++.+++.+. +
T Consensus 69 ~lL~~l~~~~--~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 69 QFLNMLLKLI--NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHHHh--CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHHHHHH
Confidence 3444444444 788999999999999999886 34679999999999999999999999986 7999999998764 2
Q ss_pred -CC-----CCcccEEEec
Q 027860 190 -VS-----DASVDAVVGT 201 (217)
Q Consensus 190 -~~-----~~sfD~Vi~~ 201 (217)
+. .++||+|+.-
T Consensus 146 ~l~~~~~~~~~fD~iFiD 163 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVD 163 (247)
T ss_pred HHHhccccCCcccEEEec
Confidence 11 2689999873
No 168
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.57 E-value=1.4e-07 Score=73.48 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=59.4
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
...+.||.|+|.|+.+..+.-....+|-.+|+.+.+++.|++.+....- ...++.+.-++++..+...||+|++.|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--CcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4678999999999999987656677899999999999999987644221 24577888888885555799999999999
Q ss_pred ccccChh
Q 027860 205 CSVKDVD 211 (217)
Q Consensus 205 ~~~~d~~ 211 (217)
.|++|.+
T Consensus 133 ghLTD~d 139 (218)
T PF05891_consen 133 GHLTDED 139 (218)
T ss_dssp GGS-HHH
T ss_pred ccCCHHH
Confidence 9999853
No 169
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.56 E-value=2e-07 Score=73.88 Aligned_cols=76 Identities=26% Similarity=0.315 Sum_probs=66.8
Q ss_pred CCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---CCCCcccEEEec
Q 027860 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGT 201 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~Vi~~ 201 (217)
...+||||||.|.++..+|+ .+...++|||+....+..|.+++.+.+++ |+.++..|+..+- +++++.|-|+.+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~--Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK--NLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 35899999999999999997 78889999999999999999999999974 8999999998763 455699999887
Q ss_pred cc
Q 027860 202 LV 203 (217)
Q Consensus 202 ~~ 203 (217)
+-
T Consensus 127 FP 128 (227)
T COG0220 127 FP 128 (227)
T ss_pred CC
Confidence 63
No 170
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.55 E-value=3.6e-07 Score=69.69 Aligned_cols=84 Identities=21% Similarity=0.155 Sum_probs=54.9
Q ss_pred CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcC--CCCCCeEEEeccccc-c--C-CCCCccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEA-I--P-VSDASVD 196 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~--~~~~~i~~~~~d~~~-l--p-~~~~sfD 196 (217)
..+.+|||+|||+|..+..+++. ...+|+..|.++ .++..+.+++.++ .. .++.+...|-.+ . + +...+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~-~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLD-GRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccc-ccccCcEEEecCcccccccccccCC
Confidence 47899999999999999888875 577999999998 9999999887765 32 567777766533 1 1 3456899
Q ss_pred EEEeccccccccC
Q 027860 197 AVVGTLVLCSVKD 209 (217)
Q Consensus 197 ~Vi~~~~l~~~~d 209 (217)
+|+...+++.-..
T Consensus 122 ~IlasDv~Y~~~~ 134 (173)
T PF10294_consen 122 VILASDVLYDEEL 134 (173)
T ss_dssp EEEEES--S-GGG
T ss_pred EEEEecccchHHH
Confidence 9999999886543
No 171
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=4.7e-07 Score=71.86 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=69.4
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s 194 (217)
++..+. .++.+|||.|.|+|.++.+|+. .+..+++..|+-+++.+.|++++...++. +++++..+|+.+.-+++ .
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~~~~-~ 163 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-DRVTLKLGDVREGIDEE-D 163 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-cceEEEecccccccccc-c
Confidence 444555 6999999999999999999985 46679999999999999999999998886 45999999998886554 8
Q ss_pred ccEEEe
Q 027860 195 VDAVVG 200 (217)
Q Consensus 195 fD~Vi~ 200 (217)
||+|+.
T Consensus 164 vDav~L 169 (256)
T COG2519 164 VDAVFL 169 (256)
T ss_pred cCEEEE
Confidence 999975
No 172
>PRK01581 speE spermidine synthase; Validated
Probab=98.55 E-value=2.7e-07 Score=77.39 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=61.6
Q ss_pred CCCCeEEEECCCCCcchHHhhhCC-CCeEEEEcCCHHHHHHHHHH-----HHHcCCCCCCeEEEecccccc-CCCCCccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTA-----AVAAGLPLTNFKFLQAVGEAI-PVSDASVD 196 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~giD~S~~~l~~a~~~-----~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD 196 (217)
..+.+||+||||+|..+..+.+.+ ..+++++|+++.+++.|++. +.+..+..++++++.+|+... +-..+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 467799999999999888888754 46899999999999999962 112233347899999999874 33456899
Q ss_pred EEEecc
Q 027860 197 AVVGTL 202 (217)
Q Consensus 197 ~Vi~~~ 202 (217)
+|++-.
T Consensus 229 VIIvDl 234 (374)
T PRK01581 229 VIIIDF 234 (374)
T ss_pred EEEEcC
Confidence 999873
No 173
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.3e-06 Score=65.86 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=61.2
Q ss_pred CCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
...-+||||||+|..+.+|++ .++..+.++|+|+.+++...+-+..++. ++..++.|+..- +..+++|+++.+-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~~-l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLSG-LRNESVDVLVFNP 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHhh-hccCCccEEEECC
Confidence 467799999999999999987 4566789999999999998888877774 578889888766 4458999998763
No 174
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.53 E-value=7.6e-07 Score=75.36 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 113 ~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
.....+++.+...+..|||+-||.|.++..++ ....+|+|||+++.+++.|++++..+++ .+++|+.++++++
T Consensus 184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i--~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI--DNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHC
T ss_pred HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC--CcceEEEeeccch
Confidence 34444555555333489999999999999998 5567899999999999999999999998 5899999887654
No 175
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=5.5e-07 Score=72.31 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=65.5
Q ss_pred HHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCC-
Q 027860 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA- 193 (217)
Q Consensus 116 ~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~- 193 (217)
..+.+... .++..|||||+|.|.++..|++ .+..|+++++++.++...++..... .+++++.+|+...+++..
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~-~~~~v~aiEiD~~l~~~L~~~~~~~----~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLE-RAARVTAIEIDRRLAEVLKERFAPY----DNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHh-hcCeEEEEEeCHHHHHHHHHhcccc----cceEEEeCchhcCcchhhc
Confidence 34555554 4578999999999999999985 4557999999999999999886522 589999999999988753
Q ss_pred cccEEEecc
Q 027860 194 SVDAVVGTL 202 (217)
Q Consensus 194 sfD~Vi~~~ 202 (217)
.++.|+++.
T Consensus 95 ~~~~vVaNl 103 (259)
T COG0030 95 QPYKVVANL 103 (259)
T ss_pred CCCEEEEcC
Confidence 577777754
No 176
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=6.2e-08 Score=77.79 Aligned_cols=106 Identities=19% Similarity=0.274 Sum_probs=76.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHH---HHHHHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHH
Q 027860 93 EEFYASVMNSSMKSYEAEVAG---YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV 169 (217)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~ 169 (217)
++++..+|+..+..+.+.... ..++++.... .+..+||+|||.|.++. ..+...++|.|++...+..+++.
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~-~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-- 84 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQP-TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-- 84 (293)
T ss_pred HHHhHHHHHHhhhhccccccCccHHHHHHHhccC-CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC--
Confidence 444445555554443332222 2233444443 57789999999997553 24666899999999999988875
Q ss_pred HcCCCCCCe-EEEeccccccCCCCCcccEEEeccccccccChh
Q 027860 170 AAGLPLTNF-KFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211 (217)
Q Consensus 170 ~~~~~~~~i-~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~~d~~ 211 (217)
+. ....+|+..+|+.+.+||.+++..++||+..-.
T Consensus 85 -------~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 85 -------GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred -------CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 33 689999999999999999999999999997643
No 177
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.50 E-value=8.9e-07 Score=65.22 Aligned_cols=82 Identities=24% Similarity=0.313 Sum_probs=63.2
Q ss_pred CCCCeEEEECCCCCcchHHhhh-----CCCCeEEEEcCCHHHHHHHHHHHHHcCCCC-CCeEEEeccccccCCCCCcccE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPL-TNFKFLQAVGEAIPVSDASVDA 197 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~-----~~~~~v~giD~S~~~l~~a~~~~~~~~~~~-~~i~~~~~d~~~lp~~~~sfD~ 197 (217)
.+...|+|+|||.|+++..|+. .++.+|+|||.++..++.+.++.++.+... .++.+..++....+. ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 3678999999999999999997 678899999999999999999988777221 466777776655432 455678
Q ss_pred EEecccccc
Q 027860 198 VVGTLVLCS 206 (217)
Q Consensus 198 Vi~~~~l~~ 206 (217)
++..+.--.
T Consensus 103 ~vgLHaCG~ 111 (141)
T PF13679_consen 103 LVGLHACGD 111 (141)
T ss_pred EEEeecccc
Confidence 877654433
No 178
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=9e-07 Score=76.51 Aligned_cols=82 Identities=24% Similarity=0.265 Sum_probs=68.0
Q ss_pred HHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC---
Q 027860 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--- 191 (217)
Q Consensus 116 ~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~--- 191 (217)
....+.+. .++.+|||+=||.|.++..++ ....+|+|+|+++++++.|+++++.+++. |++|..++++.+...
T Consensus 283 ~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~--N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGID--NVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEeCCHHHHhhhccc
Confidence 33444444 367899999999999999998 55779999999999999999999999984 799999999988522
Q ss_pred CCcccEEEe
Q 027860 192 DASVDAVVG 200 (217)
Q Consensus 192 ~~sfD~Vi~ 200 (217)
...+|+|+.
T Consensus 360 ~~~~d~Vvv 368 (432)
T COG2265 360 GYKPDVVVV 368 (432)
T ss_pred cCCCCEEEE
Confidence 347899986
No 179
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.48 E-value=7.9e-07 Score=71.01 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=69.1
Q ss_pred HHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCC
Q 027860 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (217)
Q Consensus 114 ~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 192 (217)
...++..... .++..|||||-|||.++..|. ..+.+|+++++++.|+....++....... ...+++++|....+++
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv~gtp~~-~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRVQGTPKS-GKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHhcCCCcc-ceeeEEecccccCCCc-
Confidence 3444555555 688999999999999999998 56789999999999999999998665543 5788999999888754
Q ss_pred CcccEEEecc
Q 027860 193 ASVDAVVGTL 202 (217)
Q Consensus 193 ~sfD~Vi~~~ 202 (217)
.||.+|++.
T Consensus 123 -~fd~cVsNl 131 (315)
T KOG0820|consen 123 -RFDGCVSNL 131 (315)
T ss_pred -ccceeeccC
Confidence 589998854
No 180
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.46 E-value=1e-06 Score=71.95 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCCeEEEECCCCCcchHHhhhCC-CCeEEEEcCCHHHHHHHHHHHHHcC--CCCCCeEEEecccccc-CCCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~giD~S~~~l~~a~~~~~~~~--~~~~~i~~~~~d~~~l-p~~~~sfD~Vi~ 200 (217)
.+.+||+||||+|..+..+.+.. ..+++++|+++++++.|++.+...+ +..++++++.+|+... .-.+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999999999998887654 5689999999999999998765432 2235788888887653 222478999998
Q ss_pred ccc
Q 027860 201 TLV 203 (217)
Q Consensus 201 ~~~ 203 (217)
...
T Consensus 152 D~~ 154 (270)
T TIGR00417 152 DST 154 (270)
T ss_pred eCC
Confidence 543
No 181
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.43 E-value=3.6e-07 Score=68.50 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=54.8
Q ss_pred eEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCc-ccEEEe
Q 027860 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDAS-VDAVVG 200 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~s-fD~Vi~ 200 (217)
.|||+.||.|.++..+|+. ..+|++||+++..++.|+.+++-.|.. .+++|+.+|..++. +.... ||+|+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6999999999999999954 668999999999999999999999875 78999999998763 22222 899997
No 182
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.40 E-value=8.6e-07 Score=73.57 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=64.8
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEec-cccccCCCCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~sfD~Vi~ 200 (217)
.+|..|||==||||.++.... --|..++|+|++..|++-|+.+++..++ ....+... |+..+|+++++||.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i--~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGI--EDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCc--CceeEEEecccccCCCCCCccceEEe
Confidence 378899999999999988765 6688999999999999999999998886 35655666 99999999999999987
No 183
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.38 E-value=8.7e-07 Score=78.42 Aligned_cols=78 Identities=24% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi~ 200 (217)
..+..+||||||.|.++..+|+ .+...++|+|+....+..+.+++...++ .|+.++..|+..+. ++++++|.|+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI--TNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 3567899999999999999997 6888999999999999999999888887 58888888886553 77899999988
Q ss_pred ccc
Q 027860 201 TLV 203 (217)
Q Consensus 201 ~~~ 203 (217)
+|-
T Consensus 424 ~FP 426 (506)
T PRK01544 424 LFP 426 (506)
T ss_pred ECC
Confidence 764
No 184
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.35 E-value=1.8e-06 Score=64.17 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=68.7
Q ss_pred HHHHHhc-CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----
Q 027860 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---- 189 (217)
Q Consensus 117 ~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---- 189 (217)
.+..... ..+..|||+|.|||.++..+.+. ....++.|+.|++++....+.. +.+.++.+|+..+.
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------PGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------CCccccccchhhHHHHHh
Confidence 3444444 57889999999999999998863 3458999999999999998874 66779999998875
Q ss_pred -CCCCcccEEEecccccccc
Q 027860 190 -VSDASVDAVVGTLVLCSVK 208 (217)
Q Consensus 190 -~~~~sfD~Vi~~~~l~~~~ 208 (217)
+.+..||.|||..-+-.++
T Consensus 112 e~~gq~~D~viS~lPll~~P 131 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFP 131 (194)
T ss_pred hcCCCeeeeEEeccccccCc
Confidence 5667899999987666665
No 185
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.35 E-value=7.9e-07 Score=70.92 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=61.9
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
...++||||+|.|..+..++ ....+|++.|.|+.|....+++ | ++++ +..++.-.+.+||+|.|.++|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~k----g-----~~vl--~~~~w~~~~~~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKK----G-----FTVL--DIDDWQQTDFKFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhC----C-----CeEE--ehhhhhccCCceEEEeehhhh
Confidence 45789999999999999997 4556899999999997776654 3 2333 334443335689999999999
Q ss_pred ccccChhhhccC
Q 027860 205 CSVKDVDMTLQG 216 (217)
Q Consensus 205 ~~~~d~~~~L~e 216 (217)
..-.+|...|++
T Consensus 162 DRc~~P~~LL~~ 173 (265)
T PF05219_consen 162 DRCDRPLTLLRD 173 (265)
T ss_pred hccCCHHHHHHH
Confidence 999998887764
No 186
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.6e-06 Score=65.64 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=67.4
Q ss_pred CCCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcC--------CCCCCeEEEeccccccCCCC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAG--------LPLTNFKFLQAVGEAIPVSD 192 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~--------~~~~~i~~~~~d~~~lp~~~ 192 (217)
.++.++||+|.|+|+++.-++. ..+...+|||.-++.++.+++++.+.- |...++.++++|....--+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 3899999999999999987764 455566999999999999999886643 34467889999999886667
Q ss_pred CcccEEEecccccc
Q 027860 193 ASVDAVVGTLVLCS 206 (217)
Q Consensus 193 ~sfD~Vi~~~~l~~ 206 (217)
++||.|.+...-.-
T Consensus 161 a~YDaIhvGAaa~~ 174 (237)
T KOG1661|consen 161 APYDAIHVGAAASE 174 (237)
T ss_pred CCcceEEEccCccc
Confidence 89999999765443
No 187
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.31 E-value=2.1e-05 Score=63.75 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhc--CCCCeEEEECCCCCcchHHhhh-CCC--CeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccc
Q 027860 111 VAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAA-DTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185 (217)
Q Consensus 111 ~~~~~~~~~~~l~--~~~~~VLDiGcG~G~~~~~la~-~~~--~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~ 185 (217)
+.+.+.+.+..+. +.+.+||||+||.|++...... .+. ..+...|.|+..++..++.+++.|+. ..++|.++|+
T Consensus 119 l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-~i~~f~~~dA 197 (311)
T PF12147_consen 119 LEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-DIARFEQGDA 197 (311)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-cceEEEecCC
Confidence 3344444444443 5678999999999998877654 333 58999999999999999999999996 4459999998
Q ss_pred cccC-CC--CCcccEEEeccccccccCh
Q 027860 186 EAIP-VS--DASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 186 ~~lp-~~--~~sfD~Vi~~~~l~~~~d~ 210 (217)
.+.. +. +-..+++|.+.+++.++|-
T Consensus 198 fd~~~l~~l~p~P~l~iVsGL~ElF~Dn 225 (311)
T PF12147_consen 198 FDRDSLAALDPAPTLAIVSGLYELFPDN 225 (311)
T ss_pred CCHhHhhccCCCCCEEEEecchhhCCcH
Confidence 7642 11 2346999999999999883
No 188
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.29 E-value=3.1e-06 Score=72.34 Aligned_cols=74 Identities=20% Similarity=0.107 Sum_probs=61.3
Q ss_pred CCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 126 AKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
+.+|||++||+|.++..++.. ....|+++|+++.+++.++++++.+++ .++.+..+|+..+......||+|+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~--~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL--ENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 468999999999999999763 335899999999999999999988887 46789999997753214679999874
No 189
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.26 E-value=8.3e-06 Score=66.71 Aligned_cols=94 Identities=21% Similarity=0.219 Sum_probs=59.4
Q ss_pred HHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-ccc
Q 027860 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAI 188 (217)
Q Consensus 113 ~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~-~~l 188 (217)
....++...+. ..+.+|||+|+|.|..+-.+.. ..-.+++++|.|+.|++.++..+...... ....+..... ...
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-RNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-ccchhhhhhhcccc
Confidence 33333433333 4678999999999976654443 23447999999999999999887544321 1111111111 112
Q ss_pred CCCCCcccEEEeccccccccC
Q 027860 189 PVSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 189 p~~~~sfD~Vi~~~~l~~~~d 209 (217)
++. ..|+|++.++|..+++
T Consensus 99 ~~~--~~DLvi~s~~L~EL~~ 117 (274)
T PF09243_consen 99 PFP--PDDLVIASYVLNELPS 117 (274)
T ss_pred cCC--CCcEEEEehhhhcCCc
Confidence 232 3499999999999987
No 190
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.24 E-value=4.5e-06 Score=71.09 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~Vi~ 200 (217)
.+++|||+=|=||.++...+..+..+|++||.|...++.|+++++-+|+....+.|+++|+..+- -...+||+||.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 58999999999999999988666669999999999999999999999987667899999997762 22358999987
No 191
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.22 E-value=3.8e-06 Score=64.58 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=58.9
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C---CCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P---VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p---~~~~sfD~Vi~ 200 (217)
++.+|||+-||+|.++.....++...|+.||.++..++..+++++..+.. .++.++..|+... + .....||+|+.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-cceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 78999999999999999887788889999999999999999999998875 4688888886533 2 24678999987
No 192
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.22 E-value=6.1e-06 Score=63.95 Aligned_cols=82 Identities=29% Similarity=0.310 Sum_probs=60.8
Q ss_pred CCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCe-EEEecccccc--CC------CCCcc
Q 027860 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGEAI--PV------SDASV 195 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i-~~~~~d~~~l--p~------~~~sf 195 (217)
+.+|||||+|||....++++ -+.....-.|+.+..+...+..+...+++ ++ .-+..|+..- |. ..++|
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~--Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP--NVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc--ccCCCeEeecCCCCCccccccccCCCCc
Confidence 33699999999999999997 46678889999999887777777666653 22 2344555544 22 24689
Q ss_pred cEEEeccccccccC
Q 027860 196 DAVVGTLVLCSVKD 209 (217)
Q Consensus 196 D~Vi~~~~l~~~~d 209 (217)
|+|++.+++|-.+-
T Consensus 104 D~i~~~N~lHI~p~ 117 (204)
T PF06080_consen 104 DAIFCINMLHISPW 117 (204)
T ss_pred ceeeehhHHHhcCH
Confidence 99999999986653
No 193
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.22 E-value=7.3e-06 Score=63.64 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=50.8
Q ss_pred CCCCeEEEECCCCCcch--HH--hhh---C-C--CCeEEEEcCCHHHHHHHHHHH-------------HH------c--C
Q 027860 124 GKAKKVLEIGIGTGPNL--KY--YAA---D-T--DVQVLGVDPNRKMEKYAQTAA-------------VA------A--G 172 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~--~~--la~---~-~--~~~v~giD~S~~~l~~a~~~~-------------~~------~--~ 172 (217)
....+|+.+||++|.-. .. +.. . . ..+++|+|+|+.+++.|++-. .+ . +
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 35678999999999432 22 222 1 1 358999999999999998621 00 0 1
Q ss_pred CC-----CCCeEEEeccccccCCCCCcccEEEeccccccccChh
Q 027860 173 LP-----LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211 (217)
Q Consensus 173 ~~-----~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~~d~~ 211 (217)
+. ...+.|.+.|+.+.+...+.||+|+|-+||-++.+..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~ 153 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET 153 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH
Confidence 10 1468899999998444557899999999999997653
No 194
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.22 E-value=8.4e-06 Score=66.28 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=62.5
Q ss_pred HHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCC--
Q 027860 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-- 192 (217)
Q Consensus 116 ~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~-- 192 (217)
+.+++.+. .++..|||||.|.|.++..|.+.. .+++++|+++.+++..+++... .++++++.+|+..+....
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~----~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS----NPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT----CSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh----cccceeeecchhccccHHhh
Confidence 34555554 478899999999999999998654 8999999999999999987542 268999999999987554
Q ss_pred -CcccEEEec
Q 027860 193 -ASVDAVVGT 201 (217)
Q Consensus 193 -~sfD~Vi~~ 201 (217)
+.-..|+++
T Consensus 95 ~~~~~~vv~N 104 (262)
T PF00398_consen 95 KNQPLLVVGN 104 (262)
T ss_dssp SSSEEEEEEE
T ss_pred cCCceEEEEE
Confidence 344566664
No 195
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=6.6e-06 Score=68.70 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc
Q 027860 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 115 ~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s 194 (217)
+..+++... +|.+|||+=+|.|+++..+++.....|+++|+|+.+++..++++..+++. ..+..+.+|+...+..-+.
T Consensus 179 R~Rva~~v~-~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-~~v~~i~gD~rev~~~~~~ 256 (341)
T COG2520 179 RARVAELVK-EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-GRVEPILGDAREVAPELGV 256 (341)
T ss_pred HHHHHhhhc-CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-ceeeEEeccHHHhhhcccc
Confidence 334444443 69999999999999999999765556999999999999999999999986 4589999999998755588
Q ss_pred ccEEEecccc
Q 027860 195 VDAVVGTLVL 204 (217)
Q Consensus 195 fD~Vi~~~~l 204 (217)
+|-|++....
T Consensus 257 aDrIim~~p~ 266 (341)
T COG2520 257 ADRIIMGLPK 266 (341)
T ss_pred CCEEEeCCCC
Confidence 9999998754
No 196
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.17 E-value=8.2e-06 Score=66.82 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=61.2
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C--CCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~sfD~Vi~ 200 (217)
.+++|||+=|=||.++...+..+..+|+.||.|..+++.|++++.-+++....++|++.|+... . -..+.||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 7889999999999999988766666899999999999999999999998767899999999763 1 12468999997
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.16 E-value=3e-05 Score=59.57 Aligned_cols=75 Identities=31% Similarity=0.351 Sum_probs=61.5
Q ss_pred CCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
..+++|||+|.|.-+..++= .+..+++.+|....-+...+......++ +|++++.+.+++ +....+||+|++-.+
T Consensus 49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L--~nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL--SNVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC--CCEEEEEeeecc-cccCCCccEEEeehh
Confidence 33899999999998888773 6788999999999999999999999998 489999999999 445688999998653
No 198
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.16 E-value=2e-06 Score=72.64 Aligned_cols=92 Identities=27% Similarity=0.316 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
.++..++|+|||.|....+++......++|+|.++..+..+.......++. ..-.++.+|....|++++.||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-NKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-hhcceehhhhhcCCCCccccCcEEEEee
Confidence 466689999999999999998777789999999999999998888777776 4455699999999999999999999999
Q ss_pred cccccChhhhccC
Q 027860 204 LCSVKDVDMTLQG 216 (217)
Q Consensus 204 l~~~~d~~~~L~e 216 (217)
.+|.+++...++|
T Consensus 188 ~~~~~~~~~~y~E 200 (364)
T KOG1269|consen 188 VCHAPDLEKVYAE 200 (364)
T ss_pred cccCCcHHHHHHH
Confidence 9999999998877
No 199
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.15 E-value=9e-06 Score=74.81 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=63.5
Q ss_pred CCCeEEEECCCCCcchHHhhhC-----C--------------------------------------CCeEEEEcCCHHHH
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD-----T--------------------------------------DVQVLGVDPNRKME 161 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~-----~--------------------------------------~~~v~giD~S~~~l 161 (217)
++..++|-+||+|.++...+.. + ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 5679999999999998776430 1 12689999999999
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccccccCCC--CCcccEEEecc
Q 027860 162 KYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTL 202 (217)
Q Consensus 162 ~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~sfD~Vi~~~ 202 (217)
+.|++++...|+. ..++|.++|+..++.+ .++||+|+++-
T Consensus 270 ~~A~~N~~~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNP 311 (702)
T PRK11783 270 QAARKNARRAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNP 311 (702)
T ss_pred HHHHHHHHHcCCC-cceEEEeCChhhcccccccCCCCEEEECC
Confidence 9999999999986 5689999999988644 35799999973
No 200
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.13 E-value=1.2e-05 Score=67.80 Aligned_cols=92 Identities=20% Similarity=0.129 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEECCCCCcchHHhhh-C----CC----------------------------C-----
Q 027860 108 EAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-D----TD----------------------------V----- 149 (217)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~-~----~~----------------------------~----- 149 (217)
.+.++..+-.+..+. ++..++|--||.|.+....|- . |+ .
T Consensus 176 ketLAaAil~lagw~--~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 176 KETLAAAILLLAGWK--PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred hHHHHHHHHHHcCCC--CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 333444433333333 567999999999999888663 1 10 1
Q ss_pred --eEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 150 --QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 150 --~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
.++|+|+++.+++.|+.++...|+. ..|+|.++|+..++-+-+.+|+||++-
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~-d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVG-DLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCC-ceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 3779999999999999999999987 789999999999964337899999963
No 201
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.12 E-value=7.7e-06 Score=63.33 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=42.7
Q ss_pred HHHHHHhc--CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCC
Q 027860 116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 116 ~~~~~~l~--~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 193 (217)
..+++.+. .+...|-|+|||.+.++..+. ....|...|+-.. +-.+..+|+..+|++++
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~-----------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP-----------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S-----------------STTEEES-TTS-S--TT
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC-----------------CCCEEEecCccCcCCCC
Confidence 34555554 345789999999998886653 3457999999743 22478899999999999
Q ss_pred cccEEEeccccccc
Q 027860 194 SVDAVVGTLVLCSV 207 (217)
Q Consensus 194 sfD~Vi~~~~l~~~ 207 (217)
++|++|++..|...
T Consensus 122 svDv~VfcLSLMGT 135 (219)
T PF05148_consen 122 SVDVAVFCLSLMGT 135 (219)
T ss_dssp -EEEEEEES---SS
T ss_pred ceeEEEEEhhhhCC
Confidence 99999998887755
No 202
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.11 E-value=1.1e-05 Score=63.11 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=54.7
Q ss_pred EEEECCCCCcchHHhhhCC-CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCc-ccEEEecc
Q 027860 129 VLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS-VDAVVGTL 202 (217)
Q Consensus 129 VLDiGcG~G~~~~~la~~~-~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~s-fD~Vi~~~ 202 (217)
|.||||-.|++..+|.+.. ...++++|+++.-++.|++.+...++. .++++..+|.... ++.+. .|+|+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~~-l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLEV-LKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGGG---GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCcccc-cCCCCCCCEEEEec
Confidence 6899999999999999744 447999999999999999999999986 7899999997654 33333 78887643
No 203
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.06 E-value=1.5e-05 Score=58.43 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=47.2
Q ss_pred eEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027860 128 KVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~ 187 (217)
++||||||.|.++..+++ .+..+++++|+++.+.+.+++++..++++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~--~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP--NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEEeeeeC
Confidence 489999999999999886 34458999999999999999999887763 57776655543
No 204
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.06 E-value=7.4e-06 Score=64.02 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=53.7
Q ss_pred HHHHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHH-------HHcCCCCCCeEEEecccc
Q 027860 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAA-------VAAGLPLTNFKFLQAVGE 186 (217)
Q Consensus 116 ~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~-------~~~~~~~~~i~~~~~d~~ 186 (217)
..+++.+. .++..++|||||.|......+. .+..+.+|||+.+...+.|+... ...|.....+++..+|+.
T Consensus 32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 33445555 5788999999999998877664 44556999999999888877533 234444467888899887
Q ss_pred ccCCCC---CcccEEEecccc
Q 027860 187 AIPVSD---ASVDAVVGTLVL 204 (217)
Q Consensus 187 ~lp~~~---~sfD~Vi~~~~l 204 (217)
+.++.. ...|+|+++...
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTC 132 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TT
T ss_pred ccHhHhhhhcCCCEEEEeccc
Confidence 654211 346899997753
No 205
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=1.2e-05 Score=63.40 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=40.0
Q ss_pred CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAA 168 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~ 168 (217)
..+..+|||||..|.++..+++. ....+.|+||.+..++.|++.+
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~ 102 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEI 102 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhc
Confidence 46789999999999999999984 4557999999999999999875
No 206
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=8.6e-06 Score=70.46 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=55.3
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
..+..+||+-||||.++..++ .+...|+||+++++++..|++++..+|+ .|.+|+++-++++
T Consensus 382 ~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi--sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI--SNATFIVGQAEDL 443 (534)
T ss_pred CCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc--cceeeeecchhhc
Confidence 467889999999999999998 5567899999999999999999999998 6999999966665
No 207
>PLN02823 spermine synthase
Probab=98.03 E-value=2.5e-05 Score=65.58 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=61.7
Q ss_pred CCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHc--CCCCCCeEEEecccccc-CCCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~--~~~~~~i~~~~~d~~~l-p~~~~sfD~Vi~ 200 (217)
..++||.||+|.|....++.+. ...+++.+|+++.+++.|++.+... ++..++++++.+|+... .-.+++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999988774 3568999999999999999886432 23347899999999775 333578999997
Q ss_pred c
Q 027860 201 T 201 (217)
Q Consensus 201 ~ 201 (217)
-
T Consensus 183 D 183 (336)
T PLN02823 183 D 183 (336)
T ss_pred c
Confidence 5
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.00 E-value=1.9e-05 Score=65.64 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=55.6
Q ss_pred CCCCeEEEECCCCCcchHHhhh--------CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC--CC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DA 193 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--------~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~ 193 (217)
.++.+|||-+||+|.++..+.+ ....+++|+|+++.++..|+-++.-.+....+..+..+|....+.. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 3566899999999999887764 2567899999999999999887765565434456788887655532 47
Q ss_pred cccEEEeccc
Q 027860 194 SVDAVVGTLV 203 (217)
Q Consensus 194 sfD~Vi~~~~ 203 (217)
.||+|+++--
T Consensus 125 ~~D~ii~NPP 134 (311)
T PF02384_consen 125 KFDVIIGNPP 134 (311)
T ss_dssp -EEEEEEE--
T ss_pred ccccccCCCC
Confidence 8999999753
No 209
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.99 E-value=4e-05 Score=61.03 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=60.2
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
...+|+|||||--.++..+.. .++..|+|+||+..+++...+.+...++ ..++...|...-+ +....|+.+..=+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~---~~~~~v~Dl~~~~-~~~~~DlaLllK~ 180 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV---PHDARVRDLLSDP-PKEPADLALLLKT 180 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC---CcceeEeeeeccC-CCCCcchhhHHHH
Confidence 578999999999999887764 4567999999999999999999888885 5677777877663 3567899988777
Q ss_pred cccccC
Q 027860 204 LCSVKD 209 (217)
Q Consensus 204 l~~~~d 209 (217)
++-++.
T Consensus 181 lp~le~ 186 (251)
T PF07091_consen 181 LPCLER 186 (251)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 210
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.99 E-value=3.2e-05 Score=66.76 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=70.5
Q ss_pred CeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccccc
Q 027860 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS 206 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l~~ 206 (217)
.++|-+|||.-.+...+.+.+...++-+|+|+-.++....+..... +...+...|+..+.|++++||+|+--..+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhccCCCcceeEEEecCcccc
Confidence 4899999999999999887778899999999999988887754222 5688999999999999999999999998888
Q ss_pred ccChh
Q 027860 207 VKDVD 211 (217)
Q Consensus 207 ~~d~~ 211 (217)
+-..+
T Consensus 127 l~~de 131 (482)
T KOG2352|consen 127 LFEDE 131 (482)
T ss_pred ccCCc
Confidence 76543
No 211
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.97 E-value=7.7e-06 Score=67.10 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=60.5
Q ss_pred CCCeEEEECCCCCcc--hHH--hhhC-----CCCeEEEEcCCHHHHHHHHHHH------------------HH-----cC
Q 027860 125 KAKKVLEIGIGTGPN--LKY--YAAD-----TDVQVLGVDPNRKMEKYAQTAA------------------VA-----AG 172 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~--~~~--la~~-----~~~~v~giD~S~~~l~~a~~~~------------------~~-----~~ 172 (217)
...+|+..||++|.- +.. +... ...+++|+|+|+.+|+.|++-. .. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999943 222 2221 1357999999999999999631 00 01
Q ss_pred -------CCCCCeEEEeccccccCCC-CCcccEEEeccccccccCh
Q 027860 173 -------LPLTNFKFLQAVGEAIPVS-DASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 173 -------~~~~~i~~~~~d~~~lp~~-~~sfD~Vi~~~~l~~~~d~ 210 (217)
+. ..|.|.+.|+...+++ .+.||+|+|.+++.|+.+.
T Consensus 195 ~~~v~~~lr-~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~ 239 (287)
T PRK10611 195 LVRVRQELA-NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT 239 (287)
T ss_pred eEEEChHHH-ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH
Confidence 11 4578999999876543 5789999999999999654
No 212
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.94 E-value=1.7e-05 Score=63.17 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=53.5
Q ss_pred HHHHHHhc--CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCC
Q 027860 116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 116 ~~~~~~l~--~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 193 (217)
..+++.+. .....|-|+|||.+.+.. .....|+..|+-. .+-+++.+|+.++|++++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a-----------------~~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA-----------------VNERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeec-----------------CCCceeeccccCCcCccC
Confidence 34555554 456789999999997553 3445789999864 245689999999999999
Q ss_pred cccEEEecccccc
Q 027860 194 SVDAVVGTLVLCS 206 (217)
Q Consensus 194 sfD~Vi~~~~l~~ 206 (217)
++|+++++..|.-
T Consensus 228 svDvaV~CLSLMg 240 (325)
T KOG3045|consen 228 SVDVAVFCLSLMG 240 (325)
T ss_pred cccEEEeeHhhhc
Confidence 9999999877653
No 213
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=8.2e-05 Score=58.36 Aligned_cols=75 Identities=25% Similarity=0.274 Sum_probs=63.4
Q ss_pred CCeEEEECCCCCcchHHhh-hCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 126 AKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la-~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
+.+++|||+|.|.-+..++ ..+..+++-+|....-+...+....+.++ +|++++++-++++.-....||+|++-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L--~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL--ENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC--CCeEEehhhHhhcccccccCcEEEeeh
Confidence 5899999999999988877 46777899999999999999998888898 589999999999863211299999854
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.94 E-value=2.8e-05 Score=59.09 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=61.7
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
....+.|+|+|+|.++...+ ....+|++|+.++...+.|.+++.-.|+ .+++++.+|+....| +..|+|+|-+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa-~~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAA-HAAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hhhceeeccCCcchHHHHHH-hhhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHHHH
Confidence 34689999999999887766 4466899999999999999999877776 589999999999988 4579998854
No 215
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.93 E-value=1.1e-05 Score=69.75 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=49.0
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEE---cCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGV---DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gi---D~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
.-..+||||||+|.++.+|... +..+..+ |..+..++.|.++ |++ - .+-..-.+.|||++++||+|.|.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvp--a-~~~~~~s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVP--A-MIGVLGSQRLPFPSNAFDMVHCS 188 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccc--h-hhhhhccccccCCccchhhhhcc
Confidence 3457899999999999999843 3222222 3444556666554 543 1 11222357899999999999998
Q ss_pred cccccc
Q 027860 202 LVLCSV 207 (217)
Q Consensus 202 ~~l~~~ 207 (217)
.++-.+
T Consensus 189 rc~i~W 194 (506)
T PF03141_consen 189 RCLIPW 194 (506)
T ss_pred cccccc
Confidence 766544
No 216
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.91 E-value=5.6e-05 Score=61.37 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=61.3
Q ss_pred CCCeEEEECCCCCcc--hHHhh--hC------CCCeEEEEcCCHHHHHHHHHHH-----HHcC-----------------
Q 027860 125 KAKKVLEIGIGTGPN--LKYYA--AD------TDVQVLGVDPNRKMEKYAQTAA-----VAAG----------------- 172 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~--~~~la--~~------~~~~v~giD~S~~~l~~a~~~~-----~~~~----------------- 172 (217)
...+|+-+||++|.- +..++ +. ...+++|+|++..+|+.|+.-. ...+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 367899999999943 33322 21 2468999999999999998521 1011
Q ss_pred ------CCCCCeEEEeccccccCCCCCcccEEEeccccccccChhh
Q 027860 173 ------LPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDM 212 (217)
Q Consensus 173 ------~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~~d~~~ 212 (217)
+. ..|.|...|+..-++..+.||+|+|-+||.++..+.+
T Consensus 176 y~v~~~ir-~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q 220 (268)
T COG1352 176 YRVKEELR-KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQ 220 (268)
T ss_pred EEEChHHh-cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHH
Confidence 11 3467788887776644577999999999999976643
No 217
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.00018 Score=55.02 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=63.7
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C-CCC-CcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSD-ASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~-~sfD~Vi~ 200 (217)
.+.++||+=+|+|.++.....++...++.||.+..++...+++++..+.. .+..++..|+... + ... ++||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-GEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-cceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 78999999999999999988788889999999999999999999888865 6788899998844 1 222 35999986
No 218
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.0002 Score=57.56 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=70.6
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC--C
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--D 192 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~--~ 192 (217)
++..+. .++.+|||-|.|.|.++.++++ .+-.+++..|+-+...+.|.+-+++.++. .++++.+-|+....|. +
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEEEeecccCCccccc
Confidence 455555 6999999999999999999987 56678999999999999999999999997 8999999999887644 4
Q ss_pred CcccEEEe
Q 027860 193 ASVDAVVG 200 (217)
Q Consensus 193 ~sfD~Vi~ 200 (217)
..+|.|+.
T Consensus 176 ~~aDaVFL 183 (314)
T KOG2915|consen 176 LKADAVFL 183 (314)
T ss_pred cccceEEE
Confidence 67898875
No 219
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.81 E-value=0.00015 Score=59.93 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=71.1
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V 190 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~ 190 (217)
+++.+. .++..++|.-+|.|..+..+++. +..+++|+|.++.++..+++++...+ .++.+++++..+++ .
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHHHHhc
Confidence 444444 47789999999999999998864 34789999999999999999886543 57999999998764 2
Q ss_pred CCCcccEEEeccccc--cccChhhh
Q 027860 191 SDASVDAVVGTLVLC--SVKDVDMT 213 (217)
Q Consensus 191 ~~~sfD~Vi~~~~l~--~~~d~~~~ 213 (217)
..+++|.|+.-.++. .+.++++-
T Consensus 89 ~~~~vDgIl~DLGvSS~Qld~~~RG 113 (305)
T TIGR00006 89 LVTKIDGILVDLGVSSPQLDDPERG 113 (305)
T ss_pred CCCcccEEEEeccCCHhhcCCCCCC
Confidence 335799999877654 34454443
No 220
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.81 E-value=0.00019 Score=55.99 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=65.6
Q ss_pred HHHHhcCCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCccc
Q 027860 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 118 ~~~~l~~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 196 (217)
+.+... .+..+.||||-.|++..+|.+ .+...+++.|+++.-++.|.+.+.+.++. +.++...+|....--.++.+|
T Consensus 10 va~~V~-~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl~~l~~~d~~d 87 (226)
T COG2384 10 VANLVK-QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGLAVLELEDEID 87 (226)
T ss_pred HHHHHH-cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCccccCccCCcC
Confidence 344443 455599999999999999987 56678999999999999999999999986 789999999843323344789
Q ss_pred EEEecc
Q 027860 197 AVVGTL 202 (217)
Q Consensus 197 ~Vi~~~ 202 (217)
+|+...
T Consensus 88 ~ivIAG 93 (226)
T COG2384 88 VIVIAG 93 (226)
T ss_pred EEEEeC
Confidence 888654
No 221
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.78 E-value=0.00012 Score=64.15 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=63.2
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CCCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~Vi~ 200 (217)
.++.+|||+++|.|.-+..++.. ....+++.|+++..++..++++++.|+ .++.+...|...++ ...+.||.|+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV--SNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCchhhhhhhchhhcCeEEE
Confidence 47889999999999999888863 345899999999999999999999998 47888899988763 33467999993
No 222
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.72 E-value=0.0001 Score=62.82 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=60.7
Q ss_pred CCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCC-CCCcccEEEe
Q 027860 126 AKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVG 200 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~sfD~Vi~ 200 (217)
+.+|||+.||+|..+..+++. ....|+++|+++.+++.++++++.++. .++.+..+|+..+-. ....||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~--~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV--ENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 368999999999999999875 346899999999999999999988876 368899999887631 1357999976
No 223
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.70 E-value=0.0002 Score=51.88 Aligned_cols=76 Identities=38% Similarity=0.460 Sum_probs=51.6
Q ss_pred EEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc--cCCCC-CcccEEEeccc
Q 027860 129 VLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA--IPVSD-ASVDAVVGTLV 203 (217)
Q Consensus 129 VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~--lp~~~-~sfD~Vi~~~~ 203 (217)
+||+|||+|... .+... ....++|+|+++.++..++......+. ..+.+..+|... +++.. ..||++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL--GLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC--CceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999865 33221 224799999999999996555433221 116788888886 77877 48999944444
Q ss_pred cccc
Q 027860 204 LCSV 207 (217)
Q Consensus 204 l~~~ 207 (217)
+++.
T Consensus 129 ~~~~ 132 (257)
T COG0500 129 LHLL 132 (257)
T ss_pred hhcC
Confidence 4433
No 224
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.70 E-value=5.1e-05 Score=58.03 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
.+++|||+|+|.|.-...-++.+...|+..|+.+..+...+-+++.++. ++.+...|..- .+..||+|+...++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g---~~~~~Dl~LagDlf 152 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG---SPPAFDLLLAGDLF 152 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC---CCcceeEEEeecee
Confidence 7899999999999888777766677899999998888888888888874 67888877765 45789999999887
Q ss_pred ccccC
Q 027860 205 CSVKD 209 (217)
Q Consensus 205 ~~~~d 209 (217)
..-+.
T Consensus 153 y~~~~ 157 (218)
T COG3897 153 YNHTE 157 (218)
T ss_pred cCchH
Confidence 65443
No 225
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.64 E-value=0.00041 Score=57.06 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=48.6
Q ss_pred CCeEEEECCCCCcchHHhh-hCCCCeEEEEcCCHHHHHHHHHHHHHc-CCCCCCeEEEeccccc-c----CCCCCcccEE
Q 027860 126 AKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEA-I----PVSDASVDAV 198 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la-~~~~~~v~giD~S~~~l~~a~~~~~~~-~~~~~~i~~~~~d~~~-l----p~~~~sfD~V 198 (217)
..++||||+|..-.-..|+ +..+.+++|.|+++..++.|+++++.+ ++. .+|+++...-.. + -.+++.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCccccchhhhcccceeeEE
Confidence 4579999999885544444 345789999999999999999999998 776 788887654322 1 1234689999
Q ss_pred Eecccccccc
Q 027860 199 VGTLVLCSVK 208 (217)
Q Consensus 199 i~~~~l~~~~ 208 (217)
+|+=-++.-.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9976655443
No 226
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.62 E-value=0.00016 Score=60.25 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
.++..+|||||++|.++..+.+. +..|++||..+ |-.... . .++|....+|......+.+.+|+|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~~L~----~----~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQSLM----D----TGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCHhhh----C----CCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 37899999999999999999865 55999999653 322221 1 15788888888766323678999988554
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00029 Score=54.71 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=54.7
Q ss_pred HHHHHHhc--CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--
Q 027860 116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-- 189 (217)
Q Consensus 116 ~~~~~~l~--~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-- 189 (217)
.++.++.. .++..|+|+|+..|.++..+++. ....|+|+|+.+- .. .+++.++++|+..-+
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~-~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KP-IPGVIFLQGDITDEDTL 100 (205)
T ss_pred HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------cc-CCCceEEeeeccCccHH
Confidence 34444444 57899999999999999998873 3345999999763 11 257899999997654
Q ss_pred ------CCCCcccEEEeccc
Q 027860 190 ------VSDASVDAVVGTLV 203 (217)
Q Consensus 190 ------~~~~sfD~Vi~~~~ 203 (217)
+....+|+|++-.+
T Consensus 101 ~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred HHHHHHcCCCCcceEEecCC
Confidence 34456899997544
No 228
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.0002 Score=52.43 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecc
Q 027860 106 SYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184 (217)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d 184 (217)
.|-..-.+....++..+. .+..+.+|+|.|.|+.....++......+|+++++=.+.+++-..-..|.. +...|..-|
T Consensus 52 PYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-k~trf~Rkd 130 (199)
T KOG4058|consen 52 PYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-KSTRFRRKD 130 (199)
T ss_pred cccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-cchhhhhhh
Confidence 343333444555666665 566899999999999988877554467899999999999999877777765 677888888
Q ss_pred ccccCCCCCcccEEEeccccccccChh
Q 027860 185 GEAIPVSDASVDAVVGTLVLCSVKDVD 211 (217)
Q Consensus 185 ~~~lp~~~~sfD~Vi~~~~l~~~~d~~ 211 (217)
+-...+.+-. .|+...+-.-++|.+
T Consensus 131 lwK~dl~dy~--~vviFgaes~m~dLe 155 (199)
T KOG4058|consen 131 LWKVDLRDYR--NVVIFGAESVMPDLE 155 (199)
T ss_pred hhhccccccc--eEEEeehHHHHhhhH
Confidence 7776665533 333333333344443
No 229
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.58 E-value=0.00014 Score=56.66 Aligned_cols=68 Identities=24% Similarity=0.171 Sum_probs=52.3
Q ss_pred CCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC---CCcccEEEecc
Q 027860 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAVVGTL 202 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~sfD~Vi~~~ 202 (217)
..++|||||=...+...- .....|+.||+++. .-.+.+.|....|++ ++.||+|.++.
T Consensus 52 ~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~-----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ-----------------HPGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred cceEEeecccCCCCcccc--cCceeeEEeecCCC-----------------CCCceeeccccCCCCCCcccceeEEEEEE
Confidence 469999999866544332 34457999999863 234788899888764 57999999999
Q ss_pred ccccccChhh
Q 027860 203 VLCSVKDVDM 212 (217)
Q Consensus 203 ~l~~~~d~~~ 212 (217)
||.+++++.+
T Consensus 113 VLNfVP~p~~ 122 (219)
T PF11968_consen 113 VLNFVPDPKQ 122 (219)
T ss_pred EEeeCCCHHH
Confidence 9999999865
No 230
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.56 E-value=0.00085 Score=52.71 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-
Q 027860 112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI- 188 (217)
Q Consensus 112 ~~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l- 188 (217)
..+...+++.+ .+++.||||.=||+-+..+|. ..+.+|+++|++++..+.+.+..+..|.. ..|+++++.+.+.
T Consensus 62 g~fl~~li~~~--~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 62 GQFLQMLIRLL--NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFIEGPALESL 138 (237)
T ss_pred HHHHHHHHHHh--CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeeeecchhhhH
Confidence 34455555555 788999999999988777764 45779999999999999999998888886 7899999988653
Q ss_pred C-----CCCCcccEEEe
Q 027860 189 P-----VSDASVDAVVG 200 (217)
Q Consensus 189 p-----~~~~sfD~Vi~ 200 (217)
+ .+.++||+++.
T Consensus 139 d~l~~~~~~~tfDfaFv 155 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFV 155 (237)
T ss_pred HHHHhcCCCCceeEEEE
Confidence 1 34579999986
No 231
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.55 E-value=2.8e-05 Score=61.04 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=61.5
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--CCCCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~sfD~Vi~ 200 (217)
..+.+|||...|-|+.+....+.+..+|+.++.+++.++.|.-+=-..++....++++.+|+.++ .|+|++||+||-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 36899999999999999887766666999999999999998754322232224678999999876 388999999974
No 232
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.52 E-value=0.00051 Score=55.33 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=58.1
Q ss_pred CCCCeEEEECCCCCcchHHhhhCC-CCeEEEEcCCHHHHHHHHHHHHHc--CCCCCCeEEEeccccccC-CCCC-cccEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIP-VSDA-SVDAV 198 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~giD~S~~~l~~a~~~~~~~--~~~~~~i~~~~~d~~~lp-~~~~-sfD~V 198 (217)
..+++||=||.|.|..+..+.+.+ ..+++.+|+++.+++.|++.+... ++..++++++.+|+...- -..+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 368899999999999999998755 468999999999999999876442 223468999999997652 2223 89999
Q ss_pred Ee
Q 027860 199 VG 200 (217)
Q Consensus 199 i~ 200 (217)
+.
T Consensus 155 i~ 156 (246)
T PF01564_consen 155 IV 156 (246)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 233
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00056 Score=56.05 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=61.5
Q ss_pred CCCeEEEECCCCCcchHHhhhCC-CCeEEEEcCCHHHHHHHHHHHHHcC--CCCCCeEEEeccccccC-CCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAIP-VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~giD~S~~~l~~a~~~~~~~~--~~~~~i~~~~~d~~~lp-~~~~sfD~Vi~ 200 (217)
..++||-||.|.|..++.+.+.. -.+++.+|+++..++.|++.+.... ...++++++.+|+...- -...+||+||.
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 34699999999999999999754 4689999999999999999874433 11278999999998763 22247999987
Q ss_pred cc
Q 027860 201 TL 202 (217)
Q Consensus 201 ~~ 202 (217)
-.
T Consensus 156 D~ 157 (282)
T COG0421 156 DS 157 (282)
T ss_pred cC
Confidence 43
No 234
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.49 E-value=6e-05 Score=58.67 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=60.5
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----CCCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~sfD~Vi~ 200 (217)
....|+|.-||.|..+..++ ..+..|++||+++.-+..|+.+++-.|++ .+++|++||..++ .+....+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa-~~~~~VisIdiDPikIa~AkhNaeiYGI~-~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFA-LQGPYVIAIDIDPVKIACARHNAEVYGVP-DRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHH-HhCCeEEEEeccHHHHHHHhccceeecCC-ceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 55689999999998888887 44668999999999999999999999998 6999999999775 233344556654
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.47 E-value=0.0013 Score=54.83 Aligned_cols=96 Identities=8% Similarity=0.089 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcchHHhhh-----CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEE--Eeccc
Q 027860 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF--LQAVG 185 (217)
Q Consensus 113 ~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~-----~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~--~~~d~ 185 (217)
.....+...+. ++..|+|+|||.|.-+..|.+ .....++++|+|.++|+.+.+++....+ +.+.+ +.+|.
T Consensus 65 ~~~~~Ia~~i~-~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~--p~l~v~~l~gdy 141 (319)
T TIGR03439 65 KHSSDIAASIP-SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF--SHVRCAGLLGTY 141 (319)
T ss_pred HHHHHHHHhcC-CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC--CCeEEEEEEecH
Confidence 33444555553 566899999999988776554 2246799999999999999999874444 34544 77877
Q ss_pred ccc----CC--CCCcccEEEec-cccccccChh
Q 027860 186 EAI----PV--SDASVDAVVGT-LVLCSVKDVD 211 (217)
Q Consensus 186 ~~l----p~--~~~sfD~Vi~~-~~l~~~~d~~ 211 (217)
.+. +- ......+|+.. ..+.+++..+
T Consensus 142 ~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~e 174 (319)
T TIGR03439 142 DDGLAWLKRPENRSRPTTILWLGSSIGNFSRPE 174 (319)
T ss_pred HHHHhhcccccccCCccEEEEeCccccCCCHHH
Confidence 552 21 12335566654 4777776543
No 236
>PRK00536 speE spermidine synthase; Provisional
Probab=97.46 E-value=0.00059 Score=55.29 Aligned_cols=74 Identities=12% Similarity=-0.098 Sum_probs=56.8
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHH--cCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~--~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
+.+++||=||.|.|..++.+.+.+. +|+-+|+++.+++.+++-+.. .++..++++++.. +.+ -..++||+||.-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 4679999999999999999998664 999999999999999984422 1355577877752 211 123689999975
No 237
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.41 E-value=0.00059 Score=56.79 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccccc
Q 027860 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 205 (217)
-...+|+|.|.|..+..+.. ...++-+++.....+-.++..+. . .|+.+-+|..+- .|. -|+|++-|+||
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~-----gV~~v~gdmfq~-~P~--~daI~mkWiLh 247 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P-----GVEHVAGDMFQD-TPK--GDAIWMKWILH 247 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C-----Ccceeccccccc-CCC--cCeEEEEeecc
Confidence 47899999999999999886 45568899999888887777653 3 366777887665 443 36999999999
Q ss_pred cccChh
Q 027860 206 SVKDVD 211 (217)
Q Consensus 206 ~~~d~~ 211 (217)
|++|.+
T Consensus 248 dwtDed 253 (342)
T KOG3178|consen 248 DWTDED 253 (342)
T ss_pred cCChHH
Confidence 999853
No 238
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.40 E-value=0.00025 Score=63.32 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=52.8
Q ss_pred CCCeEEEECCCCCcchHHhhhCC---------CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADT---------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V 190 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~---------~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~ 190 (217)
...+|||.|||+|.++..++... ...++|+|+++.++..++.++...+. ..+.+...|..... -
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeeccccccccccccc
Confidence 45689999999999998876421 24789999999999999988766541 12344444432211 1
Q ss_pred CCCcccEEEecc
Q 027860 191 SDASVDAVVGTL 202 (217)
Q Consensus 191 ~~~sfD~Vi~~~ 202 (217)
..+.||+||++=
T Consensus 109 ~~~~fD~IIgNP 120 (524)
T TIGR02987 109 YLDLFDIVITNP 120 (524)
T ss_pred ccCcccEEEeCC
Confidence 125799999964
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.31 E-value=0.0019 Score=52.63 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=49.4
Q ss_pred CCeEEEECCCCCcchHHhhh-C--CCCeEEEEcCCHHHHHHHHHHHH-HcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 126 AKKVLEIGIGTGPNLKYYAA-D--TDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~-~--~~~~v~giD~S~~~l~~a~~~~~-~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
+.+|+=||+|.=.++..+.. . .+..++++|+++.+++.+++... ..++. .++.|+.+|+...+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecchhccccccccCCEEEEh
Confidence 46999999999888777553 2 35689999999999999999877 44554 68999999998886555689999876
Q ss_pred cccc
Q 027860 202 LVLC 205 (217)
Q Consensus 202 ~~l~ 205 (217)
....
T Consensus 200 alVg 203 (276)
T PF03059_consen 200 ALVG 203 (276)
T ss_dssp TT-S
T ss_pred hhcc
Confidence 6544
No 240
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.22 E-value=0.00019 Score=54.97 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=45.5
Q ss_pred CCCeEEEECCCCCcchHHhhhCC--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--------CC--C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VS--D 192 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------~~--~ 192 (217)
.+.+|||+||++|.++..+.+.. ...|+|+|+.+. ... +++.++++|..... +. .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~--~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL--QNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc--cceeeeecccchhhHHHhhhhhccccc
Confidence 45899999999999999998754 579999999875 111 35667777764321 11 2
Q ss_pred CcccEEEeccccc
Q 027860 193 ASVDAVVGTLVLC 205 (217)
Q Consensus 193 ~sfD~Vi~~~~l~ 205 (217)
..||+|++-.+..
T Consensus 90 ~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 90 EKFDLVLSDMAPN 102 (181)
T ss_dssp CSESEEEE-----
T ss_pred cCcceeccccccC
Confidence 6899999866433
No 241
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.19 E-value=0.00075 Score=57.72 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=48.9
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~ 183 (217)
....|||||.|||.++...+...+..+++++.=..|.+.|++...++|+. ++|.++.-
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInk 123 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS-DKINVINK 123 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc-cceeeecc
Confidence 34468999999999988777666678999999999999999999999997 67776543
No 242
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0058 Score=51.93 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=61.5
Q ss_pred CCCCeEEEECCCCCcchHHhhhC---CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCC-CcccE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSD-ASVDA 197 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~---~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~-~sfD~ 197 (217)
.++.+|||+.++.|.-+..+++. .+..|+++|.++.-++..++++.+.|+. ++..+..|...++ ... +.||.
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~--nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR--NVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC--ceEEEecccccccccccccCcCcE
Confidence 48899999999999988888862 2456799999999999999999999984 6888888877654 222 35999
Q ss_pred EEe
Q 027860 198 VVG 200 (217)
Q Consensus 198 Vi~ 200 (217)
|+.
T Consensus 233 iLl 235 (355)
T COG0144 233 ILL 235 (355)
T ss_pred EEE
Confidence 985
No 243
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.94 E-value=0.0062 Score=49.31 Aligned_cols=82 Identities=26% Similarity=0.233 Sum_probs=50.2
Q ss_pred CCeEEEECCC--CCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----------C
Q 027860 126 AKKVLEIGIG--TGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----------V 190 (217)
Q Consensus 126 ~~~VLDiGcG--~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----------~ 190 (217)
-...|||||| |-.+...+++ .+..+|+.+|..+-.+..++..+....- ....++++|+.+.. +
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 3579999999 4456777776 6889999999999999999998765531 23789999996632 1
Q ss_pred C-CCcccEEEeccccccccCh
Q 027860 191 S-DASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 191 ~-~~sfD~Vi~~~~l~~~~d~ 210 (217)
. +..+ .|+.+.+|||++|.
T Consensus 147 D~~rPV-avll~~vLh~v~D~ 166 (267)
T PF04672_consen 147 DFDRPV-AVLLVAVLHFVPDD 166 (267)
T ss_dssp -TTS---EEEECT-GGGS-CG
T ss_pred CCCCCe-eeeeeeeeccCCCc
Confidence 1 1223 67788899999873
No 244
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.92 E-value=0.0027 Score=53.30 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=60.8
Q ss_pred CCCeEEEECCCCCcchHHhhhCC-CCeEEEEcCCHHHHHHHHHHH-----HHcCCCCCCeEEEeccccccC-CCCCcccE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAA-----VAAGLPLTNFKFLQAVGEAIP-VSDASVDA 197 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~giD~S~~~l~~a~~~~-----~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~ 197 (217)
...+||=+|.|.|..++.+.+.+ ..+++-+|+++.|++.+++.. .+..+..++++++..|+.++- -..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 56789999999999999999877 568999999999999999432 222344578999999998773 33468999
Q ss_pred EEec
Q 027860 198 VVGT 201 (217)
Q Consensus 198 Vi~~ 201 (217)
||.-
T Consensus 369 vIVD 372 (508)
T COG4262 369 VIVD 372 (508)
T ss_pred EEEe
Confidence 9863
No 245
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.84 E-value=9e-05 Score=57.24 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=52.8
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
.+.++||+|+|.|..+..++ ....+|++.+.|..|....+++. ..++ ...+..-.+-+||+|.|..+|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~---------ynVl--~~~ew~~t~~k~dli~clNlL 179 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKN---------YNVL--TEIEWLQTDVKLDLILCLNLL 179 (288)
T ss_pred CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcC---------Ccee--eehhhhhcCceeehHHHHHHH
Confidence 45799999999999999886 34457999999999998887751 1111 112221123468888888777
Q ss_pred ccccChhhhc
Q 027860 205 CSVKDVDMTL 214 (217)
Q Consensus 205 ~~~~d~~~~L 214 (217)
.---+|-..|
T Consensus 180 DRc~~p~kLL 189 (288)
T KOG3987|consen 180 DRCFDPFKLL 189 (288)
T ss_pred HhhcChHHHH
Confidence 6555555444
No 246
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.84 E-value=0.0018 Score=53.56 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=63.0
Q ss_pred HHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V 190 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~ 190 (217)
+++.+. .++..++|.--|.|..+..+.+ .+...++|+|.++.+++.|++++.... .++.++.++..++. .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~---~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD---DRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC---TTEEEEES-GGGHHHHHHHT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc---ceEEEEeccHHHHHHHHHHc
Confidence 344443 4788999999999999999886 355899999999999999998875443 68999999998874 2
Q ss_pred -CCCcccEEEecccc--ccccChhhh
Q 027860 191 -SDASVDAVVGTLVL--CSVKDVDMT 213 (217)
Q Consensus 191 -~~~sfD~Vi~~~~l--~~~~d~~~~ 213 (217)
.-..+|.|+.-.++ +++.++++-
T Consensus 89 ~~~~~~dgiL~DLGvSS~Qld~~~RG 114 (310)
T PF01795_consen 89 NGINKVDGILFDLGVSSMQLDDPERG 114 (310)
T ss_dssp TTTS-EEEEEEE-S--HHHHHTGGGS
T ss_pred cCCCccCEEEEccccCHHHhCCCCCC
Confidence 33589999875543 344555443
No 247
>PRK10742 putative methyltransferase; Provisional
Probab=96.83 E-value=0.0075 Score=48.32 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=58.7
Q ss_pred eEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcC----CC---CCCeEEEeccccccC-CCCCcccEEE
Q 027860 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----LP---LTNFKFLQAVGEAIP-VSDASVDAVV 199 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~----~~---~~~i~~~~~d~~~lp-~~~~sfD~Vi 199 (217)
+|||.-+|.|..+..++.. +++|+++|.++.+....++.+.... +. ..+++++.+|....- -...+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999999855 5669999999998888887766531 11 146888999987662 1224799999
Q ss_pred ecccccc
Q 027860 200 GTLVLCS 206 (217)
Q Consensus 200 ~~~~l~~ 206 (217)
.==++.|
T Consensus 170 lDPMfp~ 176 (250)
T PRK10742 170 LDPMFPH 176 (250)
T ss_pred ECCCCCC
Confidence 7655555
No 248
>PHA01634 hypothetical protein
Probab=96.81 E-value=0.011 Score=42.40 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG 172 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~ 172 (217)
-.+++|+|||++.|.-..+++-.+...|+++++++...+..++.+....
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 3789999999999999999886777799999999999999998776543
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.81 E-value=0.0067 Score=49.91 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=61.1
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi 199 (217)
.++..|||+.+|.|.-+..+++ .....+++.|+++.-+...++++.+.|. .++.....|..... .....||.|+
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--FNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--ceEEEEeeccccccccccccccchhh
Confidence 4788999999999998888876 3356899999999999999999999997 47888878877662 2334699998
Q ss_pred e
Q 027860 200 G 200 (217)
Q Consensus 200 ~ 200 (217)
.
T Consensus 162 v 162 (283)
T PF01189_consen 162 V 162 (283)
T ss_dssp E
T ss_pred c
Confidence 6
No 250
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.78 E-value=0.01 Score=48.24 Aligned_cols=85 Identities=19% Similarity=0.110 Sum_probs=60.3
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHH---cC-------------------------CC--
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA---AG-------------------------LP-- 174 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~---~~-------------------------~~-- 174 (217)
...+||=-|||.|++.-.+++. +..+.|.|.|-.|+-..+-.+.. .+ ++
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4678999999999999999854 77999999999997665543321 00 10
Q ss_pred --------CCCeEEEeccccccCCCC---CcccEEEeccccccccCh
Q 027860 175 --------LTNFKFLQAVGEAIPVSD---ASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 175 --------~~~i~~~~~d~~~lp~~~---~sfD~Vi~~~~l~~~~d~ 210 (217)
..++....||...+-.++ ++||+|++++-+.-.++.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni 181 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENI 181 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHH
Confidence 135667777777775444 799999998755444443
No 251
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.77 E-value=0.0061 Score=47.16 Aligned_cols=63 Identities=24% Similarity=0.288 Sum_probs=47.9
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCC-----CCCCeEEEeccccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGL-----PLTNFKFLQAVGEA 187 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~-----~~~~i~~~~~d~~~ 187 (217)
+...+.|||||-|.++..|+. .+...+.|++|--..-++.++++....- ..+++.++..++..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK 128 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence 445789999999999999985 6788899999999998988887755431 12466666666543
No 252
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.76 E-value=0.013 Score=48.14 Aligned_cols=87 Identities=10% Similarity=0.128 Sum_probs=67.2
Q ss_pred HHHHHHhc-CCCCeEEEECCCCCcchHHhhhCC--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---
Q 027860 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--- 189 (217)
Q Consensus 116 ~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--- 189 (217)
...++.+. .+++..+|.--|.|.++..+.+.. ...++|+|.++.+++.|++++...+ +++.+++++...+.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHH
Confidence 33455555 577899999999999999988743 3679999999999999999987766 58999999887764
Q ss_pred --CCCCcccEEEeccccc
Q 027860 190 --VSDASVDAVVGTLVLC 205 (217)
Q Consensus 190 --~~~~sfD~Vi~~~~l~ 205 (217)
...+.+|-|+.-.++.
T Consensus 90 ~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 90 KELGIGKVDGILLDLGVS 107 (314)
T ss_pred HhcCCCceeEEEEeccCC
Confidence 2235778887655443
No 253
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.75 E-value=0.0063 Score=47.84 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=51.3
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---CCCCcccEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV 198 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~V 198 (217)
.++.+||-+|.++|.....++. .+...|++++.|+...+..-..++++ +|+--+..|+.... .--+.+|+|
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCCChHHhhcccccccEE
Confidence 4789999999999999988886 56779999999995544444333333 68888999987542 112489999
Q ss_pred Eec
Q 027860 199 VGT 201 (217)
Q Consensus 199 i~~ 201 (217)
++-
T Consensus 148 ~~D 150 (229)
T PF01269_consen 148 FQD 150 (229)
T ss_dssp EEE
T ss_pred Eec
Confidence 863
No 254
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.70 E-value=0.01 Score=47.99 Aligned_cols=85 Identities=14% Similarity=0.084 Sum_probs=52.1
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcC---C-------------C----------CCC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG---L-------------P----------LTN 177 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~---~-------------~----------~~~ 177 (217)
.++.++||||||.-.+-..-+.....+++..|.++.-++..++.+.+.+ | . -..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 3567899999999665443333455689999999999887776553322 0 0 001
Q ss_pred e-EEEeccccccC-CCC-----CcccEEEecccccccc
Q 027860 178 F-KFLQAVGEAIP-VSD-----ASVDAVVGTLVLCSVK 208 (217)
Q Consensus 178 i-~~~~~d~~~lp-~~~-----~sfD~Vi~~~~l~~~~ 208 (217)
| .++..|+...+ +.. ..||+|++.++|+...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~ 172 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC 172 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence 2 36777887653 433 2599999999998775
No 255
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.66 E-value=0.043 Score=46.96 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=53.1
Q ss_pred CCCeEEEECCCCCcchHHhhhC----------------CCCeEEEEcCCHHHHHHHHHHHHH---------cCC--CCCC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD----------------TDVQVLGVDPNRKMEKYAQTAAVA---------AGL--PLTN 177 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~----------------~~~~v~giD~S~~~l~~a~~~~~~---------~~~--~~~~ 177 (217)
....|+|+|||+|.++..+... +..+++.-|+-.+-.+..-+.+.. .++ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 3668999999999887665321 235777777765544333332211 000 0001
Q ss_pred eEEEec---cccccCCCCCcccEEEeccccccccChhhhc
Q 027860 178 FKFLQA---VGEAIPVSDASVDAVVGTLVLCSVKDVDMTL 214 (217)
Q Consensus 178 i~~~~~---d~~~lp~~~~sfD~Vi~~~~l~~~~d~~~~L 214 (217)
.-|+.+ ....--||.++.+++++.+.|||+......|
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l 182 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESV 182 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhh
Confidence 123332 2222238899999999999999998744433
No 256
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.64 E-value=0.009 Score=50.34 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=46.5
Q ss_pred CCCCeEEEECCCCCcchHHhhhC-----------C------CCeEEEEcCCHHHHHHHHHHHHHc-----CCCCCCe--E
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD-----------T------DVQVLGVDPNRKMEKYAQTAAVAA-----GLPLTNF--K 179 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~-----------~------~~~v~giD~S~~~l~~a~~~~~~~-----~~~~~~i--~ 179 (217)
...-+|+|+||..|.++..+... . ..+|+.-|+-.+-....-+.+... .. +++ .
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~--~~~f~~ 92 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF--RNYFVS 92 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT--TSEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC--ceEEEE
Confidence 45678999999999998876541 1 147888888665443333222111 01 122 2
Q ss_pred EEeccccccCCCCCcccEEEeccccccccChh
Q 027860 180 FLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211 (217)
Q Consensus 180 ~~~~d~~~lp~~~~sfD~Vi~~~~l~~~~d~~ 211 (217)
-+-+....--||+++.|++++.++|||+....
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP 124 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVP 124 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCC
Confidence 22344443348999999999999999998743
No 257
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.54 E-value=0.012 Score=46.45 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHc-CCCCCCeEEEecc-cccc-C---CCCCccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAV-GEAI-P---VSDASVD 196 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~-~~~~~~i~~~~~d-~~~l-p---~~~~sfD 196 (217)
+++.++||||.|.-=.-..+.. ..+.+++|.|+++..+..|+..+..+ ++. ..+++.... -..+ + -..+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh-hheeEEeccCccccccccccccceee
Confidence 3566889998775533222322 45778999999999999999988666 443 445554432 2222 1 1257899
Q ss_pred EEEeccccccccC
Q 027860 197 AVVGTLVLCSVKD 209 (217)
Q Consensus 197 ~Vi~~~~l~~~~d 209 (217)
++.|+--+|.-.+
T Consensus 156 ~tlCNPPFh~s~~ 168 (292)
T COG3129 156 ATLCNPPFHDSAA 168 (292)
T ss_pred eEecCCCcchhHH
Confidence 9999987775443
No 258
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.014 Score=46.35 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=54.1
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCC-eEEEeccccccC---CCCCcccEEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN-FKFLQAVGEAIP---VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~-i~~~~~d~~~lp---~~~~sfD~Vi 199 (217)
.++..+||||+.||.++..+.+.+..+|+++|...+.+..--+. . ++ +.+...|+..+. +. +..|+++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d---~rV~~~E~tN~r~l~~~~~~-~~~d~~v 149 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D---PRVIVLERTNVRYLTPEDFT-EKPDLIV 149 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C---CcEEEEecCChhhCCHHHcc-cCCCeEE
Confidence 58899999999999999999988888999999998776654432 1 23 345556666553 32 3677888
Q ss_pred eccccccc
Q 027860 200 GTLVLCSV 207 (217)
Q Consensus 200 ~~~~l~~~ 207 (217)
+--.+-.+
T Consensus 150 ~DvSFISL 157 (245)
T COG1189 150 IDVSFISL 157 (245)
T ss_pred EEeehhhH
Confidence 75554443
No 259
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.33 E-value=0.016 Score=46.74 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=50.4
Q ss_pred CCeEEEECCCCCcchHHhhh--C-------CCCeEEEEcCCHHHHHHHHHHHHHc-----CCCCCCeEEEeccccccCCC
Q 027860 126 AKKVLEIGIGTGPNLKYYAA--D-------TDVQVLGVDPNRKMEKYAQTAAVAA-----GLPLTNFKFLQAVGEAIPVS 191 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~--~-------~~~~v~giD~S~~~l~~a~~~~~~~-----~~~~~~i~~~~~d~~~lp~~ 191 (217)
..+|+|+|.|+|.++..+.. . ...+++-||+|+.+.+.-++++... ... .++.| ..++...|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~-~~i~w-~~~l~~~p-- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFG-DPIRW-LDDLEEVP-- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTC-GCEEE-ESSGGCS---
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccC-Cccch-hhhhhccc--
Confidence 46999999999999887665 1 1358999999999988888876542 121 35666 33554554
Q ss_pred CCcccEEEecccccccc
Q 027860 192 DASVDAVVGTLVLCSVK 208 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~~~ 208 (217)
..-+|+++.+|..+|
T Consensus 95 --~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 --FPGFIIANELFDALP 109 (252)
T ss_dssp --CCEEEEEESSGGGS-
T ss_pred --CCEEEEEeeehhcCc
Confidence 345777777777665
No 260
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=0.024 Score=49.90 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=72.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhc-C-C--CCeEEEECCCCCcchHHhhh-----CCCCeEEEEcCCHHHHHHHHHHHH
Q 027860 99 VMNSSMKSYEAEVAGYKSQLFDNLR-G-K--AKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAV 169 (217)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~-~-~--~~~VLDiGcG~G~~~~~la~-----~~~~~v~giD~S~~~l~~a~~~~~ 169 (217)
.|++....|++........++++.. . + ...|+=+|+|.|.+.....+ ....++++|+.+++++-..+.+ .
T Consensus 337 tFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n 415 (649)
T KOG0822|consen 337 TFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-N 415 (649)
T ss_pred hhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-c
Confidence 4444445566655556666666654 1 1 34678889999998876554 2345899999999998887763 3
Q ss_pred HcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 170 AAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 170 ~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
...|. .+++++..|+..++-+..+.|++++-.
T Consensus 416 ~~~W~-~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 416 FECWD-NRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred hhhhc-CeeEEEeccccccCCchhhccchHHHh
Confidence 33444 689999999999985458899998743
No 261
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=96.10 E-value=0.025 Score=47.81 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHH
Q 027860 111 VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~ 167 (217)
+.+.+..+.+.. +-..|+|+|.|.|+++..+.=..+..|++||-|....+.|++.
T Consensus 141 lselvSsi~~f~--gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 141 LSELVSSISDFT--GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHhhc--CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 334444444443 5678999999999999999867788999999998888877754
No 262
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.037 Score=46.62 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhhC---------CCCeEEEEcCCHHHHHHHHHHHHHc
Q 027860 107 YEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD---------TDVQVLGVDPNRKMEKYAQTAAVAA 171 (217)
Q Consensus 107 ~~~~~~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~---------~~~~v~giD~S~~~l~~a~~~~~~~ 171 (217)
+...+..+..++.+.+. .....++|||.|+|.+..-+.+. ...++.-|++|++..+.-++.++..
T Consensus 58 FGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 58 FGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34445666666777776 34668999999999988776641 2568999999999988888877554
No 263
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.96 E-value=0.0021 Score=44.54 Aligned_cols=70 Identities=27% Similarity=0.413 Sum_probs=24.3
Q ss_pred EEECCCCCcchHHhhhC--CC--CeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-C-CCCCcccEEEec
Q 027860 130 LEIGIGTGPNLKYYAAD--TD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGT 201 (217)
Q Consensus 130 LDiGcG~G~~~~~la~~--~~--~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~sfD~Vi~~ 201 (217)
||||+..|..+..+++. .. .+++++|+.+. .+.+++.+++.++. .+++++.++.... + ++..++|+|+.=
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l~~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFLPSLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS-------------GGG--BTEEEEES-THHHHHHHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcHHHHHHcCCCCEEEEEEC
Confidence 68999999988887752 22 37999999986 33444444445554 5799999998654 2 335789999863
No 264
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.84 E-value=0.012 Score=49.13 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=58.5
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHH-------HHHHHHcCCCCCCeEEEeccccccCCC-CCcc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYA-------QTAAVAAGLPLTNFKFLQAVGEAIPVS-DASV 195 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a-------~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~sf 195 (217)
.+|.-|+|-=.|||.++...+ .-|+.|+|.||+-.++... +.++++.|....-+.++.+|...-|+. ...|
T Consensus 207 ~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred CCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 488999999999999887765 5677899999999988833 345566663323357889999888854 4589
Q ss_pred cEEEe
Q 027860 196 DAVVG 200 (217)
Q Consensus 196 D~Vi~ 200 (217)
|+|+|
T Consensus 286 DaIvc 290 (421)
T KOG2671|consen 286 DAIVC 290 (421)
T ss_pred eEEEe
Confidence 99998
No 265
>PTZ00357 methyltransferase; Provisional
Probab=95.80 E-value=0.11 Score=47.44 Aligned_cols=75 Identities=13% Similarity=0.268 Sum_probs=51.0
Q ss_pred CeEEEECCCCCcchHHhhh-----CCCCeEEEEcCCHHHHHHHHHHH-HHcCCCC------CCeEEEeccccccCCCC--
Q 027860 127 KKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAA-VAAGLPL------TNFKFLQAVGEAIPVSD-- 192 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~-----~~~~~v~giD~S~~~l~~a~~~~-~~~~~~~------~~i~~~~~d~~~lp~~~-- 192 (217)
..|+=+|+|.|.+.....+ ....++++|+.++..+.....+. ....|.. ..|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3589999999998876553 23458999999966444443332 2334531 34899999999884331
Q ss_pred ---------CcccEEEec
Q 027860 193 ---------ASVDAVVGT 201 (217)
Q Consensus 193 ---------~sfD~Vi~~ 201 (217)
+.+|+||+-
T Consensus 782 ~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred ccccccccccccceehHh
Confidence 379999984
No 266
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.66 E-value=0.14 Score=40.83 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=45.8
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-CC-CCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PV-SDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-p~-~~~sfD~Vi~ 200 (217)
..+++||-||-+.-.-+.........+++.+|+.+.+++.-++.+++.|+ .++....|+..- |- --++||++++
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTSS-BSEEEE
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHhcCCCEEEe
Confidence 47899999985544333222236677999999999999999999999997 389999998754 31 1379999987
No 267
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.66 E-value=0.058 Score=42.29 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=55.0
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCC-CCCeEEEecccccc-C-CCCCcccEEEe
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAI-P-VSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~-~~~i~~~~~d~~~l-p-~~~~sfD~Vi~ 200 (217)
.++.+||+||-|-|..-..+-..+-..-+.|+..++.+++.+.. ||. ..++-.+.+--++. + ++++.||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~----gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDW----GWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhc----ccccccceEEEecchHhhhccccccCcceeEe
Confidence 58999999999999877777656666778899999998877754 442 24666666655543 2 77889999975
No 268
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.59 E-value=0.015 Score=40.26 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.6
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S 157 (217)
+.....|||||+|.+.--|. ..|..-+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN-SEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHH-hCCCCccccccc
Confidence 46689999999998887776 456677899974
No 269
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.47 E-value=0.042 Score=45.03 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=51.7
Q ss_pred eEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC--CCcccEEEeccccc
Q 027860 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTLVLC 205 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~sfD~Vi~~~~l~ 205 (217)
+|+|+-||.|.+...+.+.+...++++|+++.+++..+.+.. .. ++.+|+..+... ...+|+|+...-..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-------~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-------NK-LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-------CC-CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 689999999999888875545568899999999988887642 22 566777776422 35699999865433
No 270
>PRK11524 putative methyltransferase; Provisional
Probab=95.44 E-value=0.059 Score=44.32 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHH
Q 027860 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA 170 (217)
Q Consensus 113 ~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~ 170 (217)
+..+.++.....++..|||-=+|+|..+... ...+.+++|+|++++.++.|++++..
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA-~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVA-KASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 4455566666578999999999999876554 46788999999999999999999754
No 271
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=0.031 Score=42.80 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=46.5
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEec-ccccc--------CCCC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAI--------PVSD 192 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~-d~~~l--------p~~~ 192 (217)
.++.+|||+||..|.++....+ .+...|.|||+-.- .+.+.+.++.+ |+.+- .+++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-------------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-------------EPPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-------------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence 5889999999999999988776 46778999998421 11134555555 44331 1456
Q ss_pred CcccEEEeccc
Q 027860 193 ASVDAVVGTLV 203 (217)
Q Consensus 193 ~sfD~Vi~~~~ 203 (217)
-.+|+|++-+.
T Consensus 135 r~VdvVlSDMa 145 (232)
T KOG4589|consen 135 RPVDVVLSDMA 145 (232)
T ss_pred CcccEEEeccC
Confidence 78899988654
No 272
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.37 E-value=0.044 Score=42.88 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHH
Q 027860 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 113 ~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~ 166 (217)
+..+.++.....++..|||.=||+|..+.... ..+.+.+|+|+++..++.|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 44555665555689999999999998776543 678899999999999998874
No 273
>PRK13699 putative methylase; Provisional
Probab=95.31 E-value=0.081 Score=42.11 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHc
Q 027860 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA 171 (217)
Q Consensus 113 ~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~ 171 (217)
+..+.++.....++..|||-=||+|..+.... ..+.+++|+|++++..+.+.+++...
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 34445555555688999999999998776654 56789999999999999999987554
No 274
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.097 Score=40.64 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=52.9
Q ss_pred CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---CCCCcccEEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~Vi 199 (217)
.++.+||-+|+.+|.....++. -+...+++++.|+.+....-..++++ +|+--+..|+.... .--+.+|+|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecccCCcHHhhhhcccccEEE
Confidence 5789999999999999988886 33568999999998776666555544 46767777775432 1124577776
Q ss_pred e
Q 027860 200 G 200 (217)
Q Consensus 200 ~ 200 (217)
.
T Consensus 151 ~ 151 (231)
T COG1889 151 Q 151 (231)
T ss_pred E
Confidence 4
No 275
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.17 E-value=0.093 Score=45.03 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=61.4
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---CCCCcccEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV 198 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~V 198 (217)
.++.+|||+.+..|.-+.++|. .....+++.|.+.+-++....++...|+ .+......|...+| |+. +||-|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV--TNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC--CceEEEccCcccccccccCc-cccee
Confidence 4789999999999987777765 4455799999999999999999999997 47778888887776 554 89998
Q ss_pred Ee
Q 027860 199 VG 200 (217)
Q Consensus 199 i~ 200 (217)
+.
T Consensus 317 LL 318 (460)
T KOG1122|consen 317 LL 318 (460)
T ss_pred ee
Confidence 74
No 276
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.05 E-value=0.11 Score=44.64 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=55.5
Q ss_pred CCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CCCCcccEEE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVV 199 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~Vi 199 (217)
.+.+|||.=+|+|.-+..+++. ....|+.-|+|+++++..+++++.+++....+++...|+..+- .....||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE
Confidence 4568999999999888777764 3458999999999999999999999986325888888888762 2457899883
No 277
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.04 E-value=0.065 Score=42.67 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=46.1
Q ss_pred CeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHH---HHHHHcCCC----CCCeEEEecccccc-CCCCCcccEE
Q 027860 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ---TAAVAAGLP----LTNFKFLQAVGEAI-PVSDASVDAV 198 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~---~~~~~~~~~----~~~i~~~~~d~~~l-p~~~~sfD~V 198 (217)
.+|||.-+|-|.-+..++. .|.+|++++-|+-+....+ +++...... ..+++++.+|..+. ..++++||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999988874 4678999999997654443 343332211 13789999998874 4557899999
Q ss_pred Eecccccc
Q 027860 199 VGTLVLCS 206 (217)
Q Consensus 199 i~~~~l~~ 206 (217)
+.-=++.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 98666655
No 278
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.87 E-value=0.094 Score=38.37 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=39.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--CCCCcccEEEeccc
Q 027860 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLV 203 (217)
Q Consensus 150 ~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~sfD~Vi~~~~ 203 (217)
+|+|+||-+++++.+++++++.++. .+++++...=+.+. ++++.+|+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNLG 55 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNLG 55 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEES
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEECC
Confidence 5899999999999999999999875 57999988877775 34458999988754
No 279
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.48 E-value=0.14 Score=45.52 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=62.0
Q ss_pred HHHHHHhc-CCCCeEEEECCCCCcchHHhhhC---C--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC
Q 027860 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD---T--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 116 ~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~~---~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp 189 (217)
+.+.+.+. .+..+|+|-.||+|.+.....+. . ...++|.|++......|+.++--.|+.. .+....+|...-|
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-~~~i~~~dtl~~~ 254 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-DANIRHGDTLSNP 254 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-cccccccccccCC
Confidence 33444443 36679999999999887765541 1 2569999999999999999988777742 4566666665555
Q ss_pred C-----CCCcccEEEeccc
Q 027860 190 V-----SDASVDAVVGTLV 203 (217)
Q Consensus 190 ~-----~~~sfD~Vi~~~~ 203 (217)
. ....||.|+++--
T Consensus 255 ~~~~~~~~~~~D~viaNPP 273 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPP 273 (489)
T ss_pred cccccCCccceeEEEeCCC
Confidence 2 2367999988653
No 280
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.39 E-value=0.14 Score=41.14 Aligned_cols=87 Identities=18% Similarity=0.110 Sum_probs=48.6
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCC---C-CCeEEEecccccc---CCCCCc-cc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP---L-TNFKFLQAVGEAI---PVSDAS-VD 196 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~---~-~~i~~~~~d~~~l---p~~~~s-fD 196 (217)
....||++|+|+|.-+...+...+.+|+-.|+..-+.. .+.+....+.. . ..+.....+-... .+.... ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35679999999996666666557788888888754332 22221111110 0 1222222222221 122233 99
Q ss_pred EEEeccccccccChhh
Q 027860 197 AVVGTLVLCSVKDVDM 212 (217)
Q Consensus 197 ~Vi~~~~l~~~~d~~~ 212 (217)
+|++..++.+...++.
T Consensus 165 lilasDvvy~~~~~e~ 180 (248)
T KOG2793|consen 165 LILASDVVYEEESFEG 180 (248)
T ss_pred EEEEeeeeecCCcchh
Confidence 9999888776655443
No 281
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.92 E-value=0.099 Score=40.98 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=33.2
Q ss_pred CCCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAA 168 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~ 168 (217)
..+-++.|-.||.|+++-.+.- ..-..++|-|+++++++.|++++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 4567899999999998877652 22347999999999999999864
No 282
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.75 E-value=0.11 Score=40.47 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=33.7
Q ss_pred CCCeEEEECCCCCcchHHhhh-----CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-----~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
++..|+|+|.-.|.-+.++|. ....+|+|||+......... .+..... ++|++++||..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~-~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMS-PRITFIQGDSIDP 97 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG-----TTEEEEES-SSST
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhcccc-CceEEEECCCCCH
Confidence 788999999999988877764 35679999999644332221 1111222 6899999998654
No 283
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.63 E-value=0.083 Score=43.39 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=42.7
Q ss_pred CCCeEEEECCCCCcchH-HhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCC
Q 027860 125 KAKKVLEIGIGTGPNLK-YYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL 173 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~-~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~ 173 (217)
.+..|.|+=+|.|+++. +|...+...|+++|.++..++..++.++.++.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 56889999999999999 67767778999999999999999988877654
No 284
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.00 E-value=0.54 Score=39.60 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=48.7
Q ss_pred CCCCeEEEECCC-CCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecc-ccccCCCCCcccEEEec
Q 027860 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-GEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~VLDiGcG-~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d-~~~lp~~~~sfD~Vi~~ 201 (217)
.++..|+=+|+| .|.+...+++..+++|+++|.+++-++.|++.- .-.++... .....--.+.||+|+..
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG--------Ad~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG--------ADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC--------CcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 578888888887 446666777767799999999999999998862 22334332 22222111239999987
Q ss_pred cc
Q 027860 202 LV 203 (217)
Q Consensus 202 ~~ 203 (217)
-.
T Consensus 237 v~ 238 (339)
T COG1064 237 VG 238 (339)
T ss_pred CC
Confidence 66
No 285
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=91.85 E-value=0.13 Score=41.90 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=33.5
Q ss_pred HhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHH
Q 027860 121 NLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEK 162 (217)
Q Consensus 121 ~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~ 162 (217)
++...+++|||+|||.|.............+...|.|...++
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 333578999999999998888877655578888898887763
No 286
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.70 E-value=0.5 Score=40.35 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHH-------HHHcCCCC
Q 027860 105 KSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTA-------AVAAGLPL 175 (217)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~-~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~-------~~~~~~~~ 175 (217)
+.|.+...+.+..+.+.+. +++....|+|.|.|.....++. .....-+|+++....-+.|..+ ..-.|-..
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 3466666666777778887 7888999999999999998886 3344677888776655555432 22233323
Q ss_pred CCeEEEeccccccCC---CCCcccEEEeccccc
Q 027860 176 TNFKFLQAVGEAIPV---SDASVDAVVGTLVLC 205 (217)
Q Consensus 176 ~~i~~~~~d~~~lp~---~~~sfD~Vi~~~~l~ 205 (217)
..+..++++...-.+ -....++|+++.+..
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~F 283 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAF 283 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccC
Confidence 467777777655321 124567787776543
No 287
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.64 E-value=0.13 Score=38.57 Aligned_cols=81 Identities=20% Similarity=0.175 Sum_probs=50.3
Q ss_pred CCCeEEEECCC-CCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcC-CCCCCeEEEeccccc--cCCCCCcccEEE
Q 027860 125 KAKKVLEIGIG-TGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAG-LPLTNFKFLQAVGEA--IPVSDASVDAVV 199 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~-~~~~~i~~~~~d~~~--lp~~~~sfD~Vi 199 (217)
.+..||++|.| +|..+..+|. .+...|...|-++..++-.++..-.+- ........+..+... .....+.||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 56789999998 5555555554 567789999999999988887653221 111222222222111 113346899999
Q ss_pred eccccc
Q 027860 200 GTLVLC 205 (217)
Q Consensus 200 ~~~~l~ 205 (217)
+...+.
T Consensus 109 aADClF 114 (201)
T KOG3201|consen 109 AADCLF 114 (201)
T ss_pred eccchh
Confidence 987654
No 288
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.53 E-value=0.5 Score=40.04 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCeEEEECCCCCcchHHhhhCCCC-eEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC-CCcccEE
Q 027860 126 AKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAV 198 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~~~-~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~V 198 (217)
...|||.=+|+|.=+..++...+. +++.-|+|+.+++..++++..+.. .+...+..|+..+-.. ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~--~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG--EDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc--ccceeecchHHHHHHhcCCCccEE
Confidence 779999999999888887764443 899999999999999999987732 3555566676655321 2556665
No 289
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=90.24 E-value=0.54 Score=38.92 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=50.2
Q ss_pred eEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---CCCCcccEEEeccc
Q 027860 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTLV 203 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~Vi~~~~ 203 (217)
+++|+=||.|.+...|.+.+...+.++|+++.+.+.-+.+. + ....+|+..+. ++. .+|+++...-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~-------~--~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF-------P--EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH-------T--EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc-------c--ccccccccccccccccc-cceEEEeccC
Confidence 68999999999998887655557899999999998888875 3 67888888875 443 5999987553
No 290
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.78 E-value=0.39 Score=41.88 Aligned_cols=85 Identities=18% Similarity=0.167 Sum_probs=55.1
Q ss_pred CCCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHH---cCCCCCCeEEEec---cccccCCC-CC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVA---AGLPLTNFKFLQA---VGEAIPVS-DA 193 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~---~~~~~~~i~~~~~---d~~~lp~~-~~ 193 (217)
.....++|+|.|.|.-.-.+.. .....++.||.|..|+....+.... .|+. ++.. --..+|.. .+
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~-----~v~~~~~~r~~~pi~~~~ 273 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEP-----IVRKLVFHRQRLPIDIKN 273 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCch-----hccccchhcccCCCCccc
Confidence 3566788898887754333221 2245789999999999999887644 2221 1111 11234533 35
Q ss_pred cccEEEeccccccccChhhh
Q 027860 194 SVDAVVGTLVLCSVKDVDMT 213 (217)
Q Consensus 194 sfD~Vi~~~~l~~~~d~~~~ 213 (217)
.||+|++.+.++++......
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R 293 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSR 293 (491)
T ss_pred ceeeEEeeeeeeccCCchhh
Confidence 69999999999998876543
No 291
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=88.77 E-value=1.3 Score=36.66 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=60.0
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCC-CeEEEEcCCHHHHHHHHHHHHH--cCCCCCCeEEEeccccccC--CCCCcccEE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIP--VSDASVDAV 198 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~-~~v~giD~S~~~l~~a~~~~~~--~~~~~~~i~~~~~d~~~lp--~~~~sfD~V 198 (217)
...+.||=||.|.|...+..++... .++.-+|+....++..++.... .|...+++.+..+|...+- ...+.||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3678999999999999998887543 3789999999999888876644 2333478899999887652 446899999
Q ss_pred Ee
Q 027860 199 VG 200 (217)
Q Consensus 199 i~ 200 (217)
+.
T Consensus 200 i~ 201 (337)
T KOG1562|consen 200 IT 201 (337)
T ss_pred EE
Confidence 86
No 292
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=88.40 E-value=1.4 Score=35.36 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=41.1
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCH----HHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNR----KMEKYAQTAAVAAGLPLTNFKFLQAVGE 186 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~----~~l~~a~~~~~~~~~~~~~i~~~~~d~~ 186 (217)
.++.+||-+|++.|+....+.. .+..-|++++.|. +++..|+++ +||--+.-|+.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--------tNiiPIiEDAr 215 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--------TNIIPIIEDAR 215 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--------CCceeeeccCC
Confidence 5899999999999998877765 4666899999986 456666665 45555555554
No 293
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.34 E-value=0.85 Score=31.66 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=41.1
Q ss_pred CCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccEEEecc
Q 027860 134 IGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVGTL 202 (217)
Q Consensus 134 cG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~Vi~~~ 202 (217)
||.|.++..+++ ..+..++.+|.+++.++.+++. .+.++.+|..+.. ..-...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 577778777775 3445899999999988888764 3678999987653 2224677777643
No 294
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.91 E-value=0.85 Score=38.11 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=47.2
Q ss_pred EEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC-CCcccEEEeccc
Q 027860 129 VLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV 203 (217)
Q Consensus 129 VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~Vi~~~~ 203 (217)
|+|+-||.|.+...|.+.+..-+.++|+++.+++.-+.+. +. .+..+|+.++... -..+|+++...-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-------~~-~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-------GN-KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-------CC-CCCccChhhhhhhhCCCcCEEEecCC
Confidence 5899999999998886544334678999999888877764 22 3456777776421 125899987653
No 295
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.89 E-value=1.7 Score=35.34 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=42.5
Q ss_pred CCCCeEEEECCCCCcchHHhhhC------CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~------~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp 189 (217)
.+...++|+|||.|.++.++++. ....++.||....-. .+-.++...... +.+.-+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~-~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESE-PKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCC-CceEEEEEEeeccc
Confidence 46779999999999999999862 345789999965433 333333333211 24666777777664
No 296
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=87.38 E-value=1.7 Score=33.62 Aligned_cols=57 Identities=23% Similarity=0.340 Sum_probs=43.4
Q ss_pred CCCeEEEECCCCCcchHHhhh---CC--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
++..|+|+|.-.|.-+.++|. .. ..+|+++|++-.-++-+... .+++.|+.++..+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~egss~dp 130 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEGSSTDP 130 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeCCCCCH
Confidence 788999999999988887774 22 36899999997766555443 16888999887654
No 297
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=87.27 E-value=0.55 Score=40.57 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=51.4
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~ 187 (217)
.++..|.|+-||.|.+...+++. +..|++-|++++++++.+.++..+-+...+++....|+..
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 47889999999999999988754 4799999999999999999887666653447777777644
No 298
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.62 E-value=2.6 Score=35.81 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCCCeEEEECCCCCcchHHhhh-CCC-CeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccc----cccCCCCCcccE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA-DTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG----EAIPVSDASVDA 197 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~-~~~-~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~sfD~ 197 (217)
....+|||+|.|.|.-+-.+-. .+. ..++.++.|+..-+......+..+. ....+...|+ ..+|. ...|++
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~-ad~ytl 188 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPA-ADLYTL 188 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCc-cceeeh
Confidence 4677899999999976554432 222 2577788887655555544443332 1222333333 33332 245666
Q ss_pred EEecccccc
Q 027860 198 VVGTLVLCS 206 (217)
Q Consensus 198 Vi~~~~l~~ 206 (217)
||...-|-+
T Consensus 189 ~i~~~eLl~ 197 (484)
T COG5459 189 AIVLDELLP 197 (484)
T ss_pred hhhhhhhcc
Confidence 666554433
No 299
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=86.29 E-value=5.2 Score=34.35 Aligned_cols=89 Identities=18% Similarity=0.352 Sum_probs=54.3
Q ss_pred HHHHhc-CCCCeEEEECCCCCcc----hHHhhhC----CCCeEEEEcC----CHHHHHHHHHHH----HHcCCCCCCeEE
Q 027860 118 LFDNLR-GKAKKVLEIGIGTGPN----LKYYAAD----TDVQVLGVDP----NRKMEKYAQTAA----VAAGLPLTNFKF 180 (217)
Q Consensus 118 ~~~~l~-~~~~~VLDiGcG~G~~----~~~la~~----~~~~v~giD~----S~~~l~~a~~~~----~~~~~~~~~i~~ 180 (217)
+++-+. .+...|+|+|.|.|.- +..|+.. +..++|||+. +...++.+.+++ +..|++ ++|
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~---fef 178 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP---FEF 178 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc---EEE
Confidence 444444 3566799999999954 3444433 3348999999 788888777665 445654 344
Q ss_pred Ee---cccccc-----CCCCCcccEEEeccccccccC
Q 027860 181 LQ---AVGEAI-----PVSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 181 ~~---~d~~~l-----p~~~~sfD~Vi~~~~l~~~~d 209 (217)
.. .+.+.+ ...++.+=+|-+.+.|||+.+
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~ 215 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLD 215 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhcc
Confidence 43 233333 233344434446667888874
No 300
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=85.66 E-value=2.2 Score=38.78 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=29.3
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCH
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNR 158 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~ 158 (217)
.++..|||+||..|.++...++ ..+.-|+|||+-+
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 4778999999999999987776 4566899999875
No 301
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.10 E-value=1.7 Score=31.87 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=24.3
Q ss_pred EECCCCC--cchHHhh---hCCCCeEEEEcCCHHHHHHHHHH
Q 027860 131 EIGIGTG--PNLKYYA---ADTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 131 DiGcG~G--~~~~~la---~~~~~~v~giD~S~~~l~~a~~~ 167 (217)
|||++.| ....++. ..+..+++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544442 25677899999999999988888
No 302
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=83.75 E-value=2.2 Score=37.77 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCC--eEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEec
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDV--QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~--~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~ 201 (217)
..-..|+|+.+|.|.+...|...+-. .|+-+ ..++.+..--. +|+ |-..+.-.+.++.-+.+||+|.+.
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIyd----RGL----IG~yhDWCE~fsTYPRTYDLlHA~ 434 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYD----RGL----IGVYHDWCEAFSTYPRTYDLLHAD 434 (506)
T ss_pred cceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhh----ccc----chhccchhhccCCCCcchhheehh
Confidence 34568999999999999999754422 22222 22233332222 232 333444456777677999999999
Q ss_pred cccccccC
Q 027860 202 LVLCSVKD 209 (217)
Q Consensus 202 ~~l~~~~d 209 (217)
.+|....+
T Consensus 435 ~lfs~~~~ 442 (506)
T PF03141_consen 435 GLFSLYKD 442 (506)
T ss_pred hhhhhhcc
Confidence 88877653
No 303
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.06 E-value=4.1 Score=35.05 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=35.3
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA 168 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~ 168 (217)
.++.+||-|+.|....+.++. ....+|++||+|+..+...+-+.
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~-~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLL-AGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCeEEEEccCCchHHHHHh-cCCceEEEEeCCHHHHHHHHHHH
Confidence 588899999988887777776 44568999999999887777543
No 304
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=82.35 E-value=8.9 Score=29.15 Aligned_cols=84 Identities=13% Similarity=0.138 Sum_probs=50.6
Q ss_pred CCC-eEEEECCCCCcchHHhhhC-CCCeEEEEcCCHHHHHHHHHHHHHcCCC-CCCeEEEeccccccC---------CCC
Q 027860 125 KAK-KVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIP---------VSD 192 (217)
Q Consensus 125 ~~~-~VLDiGcG~G~~~~~la~~-~~~~v~giD~S~~~l~~a~~~~~~~~~~-~~~i~~~~~d~~~lp---------~~~ 192 (217)
++. .|+.+|||--.....+... ++..++-+|.- ++++.-++.+.+.+.. ..+.+++.+|+.+.. +..
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p-~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLP-EVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-H-HHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCH-HHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 444 8999999998887777653 36788888884 5666666666554310 012457888887521 334
Q ss_pred CcccEEEeccccccccC
Q 027860 193 ASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 193 ~sfD~Vi~~~~l~~~~d 209 (217)
+.--++++-.++.+++.
T Consensus 156 ~~ptl~i~Egvl~Yl~~ 172 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSP 172 (183)
T ss_dssp TSEEEEEEESSGGGS-H
T ss_pred CCCeEEEEcchhhcCCH
Confidence 45557777788888864
No 305
>PRK07904 short chain dehydrogenase; Provisional
Probab=81.95 E-value=9.4 Score=30.45 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=48.3
Q ss_pred CCCCeEEEECCCCCcchHHhhh----CCCCeEEEEcCCHHH-HHHHHHHHHHcCCCCCCeEEEeccccccC---------
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA----DTDVQVLGVDPNRKM-EKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------- 189 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~----~~~~~v~giD~S~~~-l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------- 189 (217)
+.+++||=.|++.| ++..+++ ..+.+|+.++.+++- ++.+.+.+...+- .+++++.+|+.+..
T Consensus 6 ~~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~--~~v~~~~~D~~~~~~~~~~~~~~ 82 (253)
T PRK07904 6 GNPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA--SSVEVIDFDALDTDSHPKVIDAA 82 (253)
T ss_pred CCCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC--CceEEEEecCCChHHHHHHHHHH
Confidence 35678888887544 4544443 335789999888763 5555554444331 36788888876532
Q ss_pred CCCCcccEEEecccc
Q 027860 190 VSDASVDAVVGTLVL 204 (217)
Q Consensus 190 ~~~~sfD~Vi~~~~l 204 (217)
...+..|+++.+...
T Consensus 83 ~~~g~id~li~~ag~ 97 (253)
T PRK07904 83 FAGGDVDVAIVAFGL 97 (253)
T ss_pred HhcCCCCEEEEeeec
Confidence 112468988876654
No 306
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=81.84 E-value=4.5 Score=33.25 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=53.5
Q ss_pred CCCeEEEECCCCCcchHHhh-hCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCC---CcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD---ASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la-~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~sfD~Vi~ 200 (217)
.++.|+=+| -.-..+..++ .+...++..+|+.+..++.-++.+++.|+ .+++..+-|+.+. +|+ ..||+++.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~--~~ie~~~~Dlr~p-lpe~~~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY--NNIEAFVFDLRNP-LPEDLKRKFDVFIT 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc--cchhheeehhccc-ChHHHHhhCCeeec
Confidence 678899998 3333333333 24556899999999999999999999997 4788888887654 332 68999875
No 307
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.71 E-value=5.8 Score=33.34 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=52.3
Q ss_pred CCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---CCCCcccEEEecc
Q 027860 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTL 202 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~Vi~~~ 202 (217)
..+++|+=||.|.+...+......-+.++|+++.+++.-+.+. +...+...|+..+. +....+|+|+...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~-------~~~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANF-------PHGDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhC-------CCCceeechHhhcChhhccccCCCEEEeCC
Confidence 4589999999999888876544446789999999998888764 22456667776653 2222789999865
Q ss_pred ccc
Q 027860 203 VLC 205 (217)
Q Consensus 203 ~l~ 205 (217)
=..
T Consensus 76 PCQ 78 (328)
T COG0270 76 PCQ 78 (328)
T ss_pred CCc
Confidence 433
No 308
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=81.69 E-value=7.4 Score=34.78 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCCeEEEECCCCCcchHHhhhC-----CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-C-CCCcccE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V-SDASVDA 197 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~-----~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~-~~~sfD~ 197 (217)
++..|.|..||+|.++....+. ....++|-+....+...|...+.-.+...+......+|...-| + ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 4568999999999988754331 1246899999999999999875444432112223334433322 2 2356888
Q ss_pred EEecc
Q 027860 198 VVGTL 202 (217)
Q Consensus 198 Vi~~~ 202 (217)
|+++-
T Consensus 297 v~~Np 301 (501)
T TIGR00497 297 VVSNP 301 (501)
T ss_pred EeecC
Confidence 88654
No 309
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=81.43 E-value=14 Score=33.35 Aligned_cols=83 Identities=14% Similarity=0.022 Sum_probs=62.7
Q ss_pred CCCeEEEECCCCCcchHHhhh----CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CCCCcc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASV 195 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~----~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~sf 195 (217)
.+++||=-| |+|.++..+.+ ....+++-+|.++..+..-.+.+...-- ..++.+..+|+.+.. +.+-+.
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~-~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP-ELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC-CcceEEEecccccHHHHHHHHhcCCC
Confidence 567777655 77888877764 3456899999999988777776654311 257889999998764 556679
Q ss_pred cEEEeccccccccC
Q 027860 196 DAVVGTLVLCSVKD 209 (217)
Q Consensus 196 D~Vi~~~~l~~~~d 209 (217)
|+|+-..++-|+|-
T Consensus 327 d~VfHAAA~KHVPl 340 (588)
T COG1086 327 DIVFHAAALKHVPL 340 (588)
T ss_pred ceEEEhhhhccCcc
Confidence 99999999999984
No 310
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=80.56 E-value=2.7 Score=35.19 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=47.8
Q ss_pred EEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-------CCCCcccEEEe
Q 027860 129 VLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------VSDASVDAVVG 200 (217)
Q Consensus 129 VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-------~~~~sfD~Vi~ 200 (217)
-+|||.|.--+-..+.. ..+....++|+...-++.|.++..+.++. ..+.+++-.....- -++.-||++.|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-s~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-SLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-cceeeEEecchhhcchhhhccCccceeeEEec
Confidence 47888776644333332 34567899999999999999999888875 56666655333221 11334777766
Q ss_pred cc
Q 027860 201 TL 202 (217)
Q Consensus 201 ~~ 202 (217)
+-
T Consensus 185 NP 186 (419)
T KOG2912|consen 185 NP 186 (419)
T ss_pred CC
Confidence 54
No 311
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=80.42 E-value=3.7 Score=29.48 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=34.2
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC-CCcccEEEeccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~Vi~~~~ 203 (217)
...+|+|||-|.=.......+..+..++++|+.+. .+. . .+.++..|+.+-.+. -...|+|++.--
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~-----g~~~v~DDif~P~l~iY~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-E-----GVNFVVDDIFNPNLEIYEGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-----------------STTEE---SSS--HHHHTTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-c-----CcceeeecccCCCHHHhcCCcEEEEeCC
Confidence 55699999988776555544455689999999987 111 2 345888888764311 135788887553
No 312
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.27 E-value=3.5 Score=29.12 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=40.8
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCC-CCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~Vi~~ 201 (217)
..++|.|||.|-=.......+..+..++++|+++. .|. ..+.+++.|+.+-... -...|+|++.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~----------~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP----------EGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc----------ccceEEEccCCCccHHHhhCccceeec
Confidence 44599999877554333333356689999999976 111 2467888888765311 1346777764
No 313
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.23 E-value=7.1 Score=34.99 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=35.0
Q ss_pred CCCeEEEECCCC-CcchHHhhhCCCCeEEEEcCCHHHHHHHHHH
Q 027860 125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~giD~S~~~l~~a~~~ 167 (217)
++.+|+=+|+|. |......++..+..|+++|.+++.++.+++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 688999999995 5566666666777999999999988888763
No 314
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=79.05 E-value=3.1 Score=35.53 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=36.4
Q ss_pred CCCCeEEEECCCC-CcchHHhhhCCCC-eEEEEcCCHHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 124 ~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~giD~S~~~l~~a~~~ 167 (217)
.++.+||.+|+|. |..+..+++..+. +++++|.+++.++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 4678999999987 8888888876665 699999999998888765
No 315
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=78.07 E-value=21 Score=28.20 Aligned_cols=76 Identities=20% Similarity=0.150 Sum_probs=50.4
Q ss_pred CCCeEEEECCCCCc--chHHhh---hCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccc-ccCCCCCcccEE
Q 027860 125 KAKKVLEIGIGTGP--NLKYYA---ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AIPVSDASVDAV 198 (217)
Q Consensus 125 ~~~~VLDiGcG~G~--~~~~la---~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~sfD~V 198 (217)
..+.++++.++.|. .+..|+ +..+.+++.|-+.+..+...++.+...+.. ..++|+.++.. .+--.-..+|++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEEecCCHHHHHhhccCCCEE
Confidence 55678999766543 234443 256778999999988888888888777764 45689988853 321112357777
Q ss_pred Eec
Q 027860 199 VGT 201 (217)
Q Consensus 199 i~~ 201 (217)
+.-
T Consensus 120 vVD 122 (218)
T PF07279_consen 120 VVD 122 (218)
T ss_pred EEe
Confidence 653
No 316
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=78.04 E-value=9 Score=27.96 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=49.3
Q ss_pred eEEEECCCCCcchHH----hhhCCCCeEEEEcCC--HHHHHHHHHHHHHcCCCCCCeEEEeccccccC----------CC
Q 027860 128 KVLEIGIGTGPNLKY----YAADTDVQVLGVDPN--RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~----la~~~~~~v~giD~S--~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----------~~ 191 (217)
++|=.|++.| ++.. |++..+..++.+..+ ...++.....+...+ .++.++..|+.+.. ..
T Consensus 2 ~~lItGa~~g-iG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSG-IGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCH-HHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---cccccccccccccccccccccccccc
Confidence 4666676544 4444 433556688999998 566666655555555 47899999876532 12
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
.+.+|++|.+.....
T Consensus 78 ~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 78 FGPLDILINNAGIFS 92 (167)
T ss_dssp HSSESEEEEECSCTT
T ss_pred ccccccccccccccc
Confidence 367999998877655
No 317
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=77.69 E-value=11 Score=27.89 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCC
Q 027860 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPN 157 (217)
Q Consensus 115 ~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S 157 (217)
..........-..-|||+|=|+|+.-..|.. .++..++.+|-.
T Consensus 18 L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 18 LNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 3444555555567899999999988777765 567788888864
No 318
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.46 E-value=13 Score=29.30 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=51.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.|++.| ++..+++ ..+.+|+.++.+++.++...+.+...+ .++.++.+|+.+.. +.
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5778888886544 3333332 457789999999887776666555444 35677888876532 10
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
-+..|++|.+.....
T Consensus 84 ~g~id~lv~~ag~~~ 98 (253)
T PRK05867 84 LGGIDIAVCNAGIIT 98 (253)
T ss_pred hCCCCEEEECCCCCC
Confidence 147899998876543
No 319
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=77.02 E-value=4.5 Score=37.00 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=40.4
Q ss_pred CCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccEEEec
Q 027860 134 IGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVGT 201 (217)
Q Consensus 134 cG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~Vi~~ 201 (217)
||.|..+..+++ ..+..++.+|.+++.++.+++. ...++.+|+.+.. ..-+..|++++.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~---------g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY---------GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC---------CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 456666666654 4567899999999998888652 3468889987753 112356776653
No 320
>PRK05650 short chain dehydrogenase; Provisional
Probab=76.94 E-value=15 Score=29.44 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=47.7
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----CCc
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----DAS 194 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-----~~s 194 (217)
+||=.| |+|.++..+++ ..+.+|+.++.+..-++...+.+...+ .++.++.+|+.+.. +. -+.
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG---GDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 466566 45555555543 457789999998877666655554444 46778888886532 10 146
Q ss_pred ccEEEecccccc
Q 027860 195 VDAVVGTLVLCS 206 (217)
Q Consensus 195 fD~Vi~~~~l~~ 206 (217)
+|.+|.+.....
T Consensus 78 id~lI~~ag~~~ 89 (270)
T PRK05650 78 IDVIVNNAGVAS 89 (270)
T ss_pred CCEEEECCCCCC
Confidence 899998776543
No 321
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=76.87 E-value=9.9 Score=31.28 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=34.1
Q ss_pred CCCCeEEEECCC-CCcchHHhhhCCCCeEEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG-~G~~~~~la~~~~~~v~giD~S~~~l~~a~~ 166 (217)
.++.+||..|+| .|..+..+++..+.++++++.++...+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 367788888876 4777778887777889999999998887754
No 322
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=76.18 E-value=5.3 Score=33.06 Aligned_cols=76 Identities=8% Similarity=-0.130 Sum_probs=43.8
Q ss_pred CCCCCcchHHhhh----CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeE----EEeccccccC-----CCCCcccEEE
Q 027860 133 GIGTGPNLKYYAA----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFK----FLQAVGEAIP-----VSDASVDAVV 199 (217)
Q Consensus 133 GcG~G~~~~~la~----~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~----~~~~d~~~lp-----~~~~sfD~Vi 199 (217)
-.|+|.++..|.+ .....++.+|.++..+-..++.+....-. +++. .+.+|+.+.. |.....|+|+
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~-~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPD-PKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC---TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccc-cCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 3578888877775 23368999999999988888776432211 2344 4588886643 6666899999
Q ss_pred eccccccccC
Q 027860 200 GTLVLCSVKD 209 (217)
Q Consensus 200 ~~~~l~~~~d 209 (217)
-..++-|++-
T Consensus 83 HaAA~KhVpl 92 (293)
T PF02719_consen 83 HAAALKHVPL 92 (293)
T ss_dssp E------HHH
T ss_pred EChhcCCCCh
Confidence 9999999863
No 323
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.10 E-value=6.7 Score=34.20 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDA 197 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~ 197 (217)
...+|+=+|+ |.++..+++ ..+..++.+|.+++.++..++.. ..+.++.+|+.+.. ..-..+|.
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 4567888876 666666554 45778999999999888776642 24567888875432 12246787
Q ss_pred EEec
Q 027860 198 VVGT 201 (217)
Q Consensus 198 Vi~~ 201 (217)
|++.
T Consensus 301 vi~~ 304 (453)
T PRK09496 301 FIAL 304 (453)
T ss_pred EEEC
Confidence 7764
No 324
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.94 E-value=4.9 Score=33.75 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=34.9
Q ss_pred CCCCeEEEECCCC-CcchHHhhh-CCCCeEEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGT-GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG~-G~~~~~la~-~~~~~v~giD~S~~~l~~a~~ 166 (217)
..+.+||=+|+|. |.++...++ ....+|+.+|+++.-++.|++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 4788999999995 555555555 355689999999999999998
No 325
>PRK10458 DNA cytosine methylase; Provisional
Probab=75.77 E-value=10 Score=33.68 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=41.6
Q ss_pred CCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC
Q 027860 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp 189 (217)
..+++|+=||.|.+...+-..+...+.++|+++.+.+.-+.+.... +......+|+..+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~----p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD----PATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC----CccceeccChhhCc
Confidence 5689999999999988886555556789999998887777653111 12334455665553
No 326
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.44 E-value=1.1 Score=39.43 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCCCeEEEECCCCCcchHHhhhC--CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----CCCCCcccE
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDA 197 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~sfD~ 197 (217)
.++.+|||.=+++|.-+..+++. ...++++-|.+++.++..+++++.++.. ..++....|+..+ +-....||+
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHHHHHHhccccccccce
Confidence 35678999999999888888863 3458999999999999999988777653 3445556666443 233467888
Q ss_pred EE
Q 027860 198 VV 199 (217)
Q Consensus 198 Vi 199 (217)
|=
T Consensus 187 ID 188 (525)
T KOG1253|consen 187 ID 188 (525)
T ss_pred Ee
Confidence 74
No 327
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=75.36 E-value=18 Score=28.49 Aligned_cols=76 Identities=18% Similarity=0.010 Sum_probs=50.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
+++++|=.|+ +|..+..+++ ..+.+++.++.+++.++...+.+.+.+ .++.++.+|+.+.. + .
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 6788888885 4445555443 457799999999877776666555544 35778888876532 0 0
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|.||.+...
T Consensus 86 ~~~id~vi~~ag~ 98 (256)
T PRK06124 86 HGRLDILVNNVGA 98 (256)
T ss_pred cCCCCEEEECCCC
Confidence 1467889887654
No 328
>PRK09291 short chain dehydrogenase; Provisional
Probab=75.32 E-value=19 Score=28.32 Aligned_cols=74 Identities=12% Similarity=0.017 Sum_probs=46.1
Q ss_pred CeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccEEE
Q 027860 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVV 199 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~Vi 199 (217)
++||=.|+ +|.++..+++ ..+..+++++.++..+..........+ ..+.++.+|+.+.. ......|+|+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG---LALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 46777775 4445554443 457789999988776655555444444 35778888876542 1123689999
Q ss_pred ecccc
Q 027860 200 GTLVL 204 (217)
Q Consensus 200 ~~~~l 204 (217)
.+...
T Consensus 79 ~~ag~ 83 (257)
T PRK09291 79 NNAGI 83 (257)
T ss_pred ECCCc
Confidence 87654
No 329
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=75.15 E-value=16 Score=30.15 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=29.2
Q ss_pred eEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHH
Q 027860 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ 165 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~ 165 (217)
-++=..-|.|..+..++ ..+.+|+|.|=+-++.+.-+
T Consensus 253 Pmi~fakG~g~~Le~l~-~tG~DVvgLDWTvdp~ear~ 289 (359)
T KOG2872|consen 253 PMILFAKGSGGALEELA-QTGYDVVGLDWTVDPAEARR 289 (359)
T ss_pred ceEEEEcCcchHHHHHH-hcCCcEEeecccccHHHHHH
Confidence 56667789999999997 66889999999877665443
No 330
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=74.66 E-value=5.8 Score=35.90 Aligned_cols=58 Identities=5% Similarity=0.031 Sum_probs=39.5
Q ss_pred CCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccEEEe
Q 027860 134 IGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 134 cG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~Vi~ 200 (217)
||.|..+..+++ ..+..++.+|.+++.++.+++. ....+.+|+.+.. ..-+..|.++.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~---------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER---------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC---------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 456666666665 4567899999999988888652 4568889887642 12246775554
No 331
>PRK07454 short chain dehydrogenase; Provisional
Probab=74.13 E-value=22 Score=27.71 Aligned_cols=77 Identities=9% Similarity=-0.015 Sum_probs=49.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
..+++|=.| |+|.++..+++ ..+.+|++++.++.-.....+.....+ .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG---VKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345677777 45655555554 456789999999876655555444333 36788889886642 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+..|+|+.+....
T Consensus 81 ~~~id~lv~~ag~~ 94 (241)
T PRK07454 81 FGCPDVLINNAGMA 94 (241)
T ss_pred cCCCCEEEECCCcc
Confidence 13579999877654
No 332
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=73.47 E-value=27 Score=28.41 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCCeEEEECCCCCcchHHhhhC-----CCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~-----~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~ 186 (217)
.+..++|+|.|+..-+..|... ....++.||+|...++...+.+...... -.+.-+.+|.+
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~ 143 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYE 143 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHH
Confidence 5778999999999877766541 2358999999999998766655443322 12444555554
No 333
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=72.49 E-value=18 Score=32.98 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=48.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHc-----CC-CCCCeEEEeccccccC-CC--C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAA-----GL-PLTNFKFLQAVGEAIP-VS--D 192 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~-----~~-~~~~i~~~~~d~~~lp-~~--~ 192 (217)
.++.||=.| |+|.++..+++ ..+.+|++++.+.+-+....+.+.+. +. ...++.++.+|+.+.. +. -
T Consensus 79 ~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 566777666 45666666554 45778999999887665544433221 10 0135788999987643 11 1
Q ss_pred CcccEEEecccc
Q 027860 193 ASVDAVVGTLVL 204 (217)
Q Consensus 193 ~sfD~Vi~~~~l 204 (217)
+.+|+||++.+.
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 458999887654
No 334
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.22 E-value=19 Score=28.36 Aligned_cols=78 Identities=17% Similarity=0.009 Sum_probs=51.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
+++++|=.| |+|..+..+++ ..+.++++++.++...+...+.+...+ .++.++.+|+.+.. +.
T Consensus 6 ~~~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 6 NGKTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG---GKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC---ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456777555 55555555553 456789999999887777666665544 35778888886542 11
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
.+..|+||.+....+
T Consensus 82 ~~~~d~vi~~ag~~~ 96 (262)
T PRK13394 82 FGSVDILVSNAGIQI 96 (262)
T ss_pred cCCCCEEEECCccCC
Confidence 135799888776543
No 335
>PRK08267 short chain dehydrogenase; Provisional
Probab=71.99 E-value=18 Score=28.71 Aligned_cols=72 Identities=10% Similarity=-0.097 Sum_probs=46.1
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC------CC
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS------DA 193 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~------~~ 193 (217)
++|=.|++ |.++..+++ ..+.+|+.++.+++.++...+... + .++.++.+|+.+.. +. .+
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~---~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A---GNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C---CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 56777754 444444443 456789999999877666554432 2 36788888886632 11 35
Q ss_pred cccEEEeccccc
Q 027860 194 SVDAVVGTLVLC 205 (217)
Q Consensus 194 sfD~Vi~~~~l~ 205 (217)
.+|+|+.+....
T Consensus 77 ~id~vi~~ag~~ 88 (260)
T PRK08267 77 RLDVLFNNAGIL 88 (260)
T ss_pred CCCEEEECCCCC
Confidence 689999877654
No 336
>PRK08703 short chain dehydrogenase; Provisional
Probab=71.72 E-value=29 Score=27.05 Aligned_cols=77 Identities=17% Similarity=0.069 Sum_probs=46.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---C--------
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---V-------- 190 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---~-------- 190 (217)
++++||=.|+ +|.++..+++ ..+.+|++++.++..++...+.+...+- ..+.++..|+.+.. +
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH--PEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC--CCcceEEeeecccchHHHHHHHHHHH
Confidence 5678888885 4555555553 4577899999998776665555443331 23455666653210 0
Q ss_pred --CCCcccEEEecccc
Q 027860 191 --SDASVDAVVGTLVL 204 (217)
Q Consensus 191 --~~~sfD~Vi~~~~l 204 (217)
-.+..|.|+.+...
T Consensus 82 ~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 82 EATQGKLDGIVHCAGY 97 (239)
T ss_pred HHhCCCCCEEEEeccc
Confidence 01457999887764
No 337
>PRK06139 short chain dehydrogenase; Provisional
Probab=71.40 E-value=13 Score=31.17 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=50.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
.+++||=.|++.| ++..+++ ..+.+|+.++.+++.++...+.+...+ .++.++..|+.+.. + .
T Consensus 6 ~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALG---AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 5667887776433 3444332 457789999999988877776665555 35667777775431 0 0
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
.+.+|++|.+....
T Consensus 82 ~g~iD~lVnnAG~~ 95 (330)
T PRK06139 82 GGRIDVWVNNVGVG 95 (330)
T ss_pred cCCCCEEEECCCcC
Confidence 15689999987654
No 338
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=71.21 E-value=7.3 Score=35.84 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=43.1
Q ss_pred CCeEEEECCCC-CcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccEEEe
Q 027860 126 AKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 126 ~~~VLDiGcG~-G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~Vi~ 200 (217)
...|+=+|+|. |..........+..++.+|.+++.++.+++. ...++.+|+.+.. ..-+..|++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~---------g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF---------GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc---------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 35677676653 3333332235567899999999999888652 3468889987764 11236777765
Q ss_pred c
Q 027860 201 T 201 (217)
Q Consensus 201 ~ 201 (217)
.
T Consensus 471 ~ 471 (621)
T PRK03562 471 A 471 (621)
T ss_pred E
Confidence 4
No 339
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=70.79 E-value=25 Score=27.70 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=51.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.+++||=.| |+|.++..+++ ..+.+|++++.++..++...+.+...+ .++.++.+|+.+.. +.
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG---LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 567888777 45555555554 457789999999887776666655444 35677888886532 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+..|+||.+....
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 13579998877654
No 340
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=70.73 E-value=22 Score=28.38 Aligned_cols=77 Identities=18% Similarity=0.045 Sum_probs=50.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.|++.| ++..+++ ..+.+++.++.+++.++...+.+...+ .++.++.+|+.+.. +.
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG---IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 5678888886654 3333332 456789999999887776666655444 35778888886532 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+.+|.+|.+....
T Consensus 85 ~~~id~li~~ag~~ 98 (265)
T PRK07097 85 VGVIDILVNNAGII 98 (265)
T ss_pred CCCCCEEEECCCCC
Confidence 14689999888654
No 341
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=70.30 E-value=19 Score=29.29 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=42.4
Q ss_pred HHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHc
Q 027860 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA 171 (217)
Q Consensus 118 ~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~ 171 (217)
.+.....++..|||.=+|+|..+... ...+..++|+|+++..++.+.+++...
T Consensus 215 ~i~~~s~~~diVlDpf~GsGtt~~aa-~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 215 LIRDYSFPGDIVLDPFAGSGTTGIAA-KNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHhcCCCCCEEeecCCCCChHHHHH-HHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 33333458999999999999877654 366788999999999999999987543
No 342
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=70.01 E-value=13 Score=29.66 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=42.9
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~ 187 (217)
..+.-|.+||-|.|..++.+..........++++..++.-.+-..+... .++....+|+..
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~---~~~~IHh~D~LR 109 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP---GKLRIHHGDVLR 109 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC---cceEEeccccce
Confidence 3567899999999999999886655677778887777666655544333 355666666643
No 343
>PRK07326 short chain dehydrogenase; Provisional
Probab=69.88 E-value=27 Score=27.05 Aligned_cols=76 Identities=18% Similarity=0.021 Sum_probs=48.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++.||=+| |+|.++..+++ ..+.+|++++.++.......+.+... ..+.++.+|+.+.. +.
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK----GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc----CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456788888 56666666654 34678999999887665554444322 25778888876431 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+.+|+||.+....
T Consensus 80 ~~~~d~vi~~ag~~ 93 (237)
T PRK07326 80 FGGLDVLIANAGVG 93 (237)
T ss_pred cCCCCEEEECCCCC
Confidence 13689998776543
No 344
>PRK06194 hypothetical protein; Provisional
Probab=69.73 E-value=24 Score=28.37 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=49.7
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.+++||=.| |+|.++..+++ ..+.+|+.+|.+...++...+.+...+ .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 5 AGKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG---AEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456788556 44555555543 457789999998877666655544433 35778888886532 11
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
.+.+|+|+.+..+..
T Consensus 81 ~g~id~vi~~Ag~~~ 95 (287)
T PRK06194 81 FGAVHLLFNNAGVGA 95 (287)
T ss_pred cCCCCEEEECCCCCC
Confidence 135799999887643
No 345
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=69.60 E-value=10 Score=31.67 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCCeEEEECCC-CCcchHHhhhCCCC-eEEEEcCCHHHHHHHHH
Q 027860 125 KAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~~~~~la~~~~~-~v~giD~S~~~l~~a~~ 166 (217)
++.+||=+|+| .|.++..+++..+. +++++|.+++-++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 67788888865 34455556665565 69999999988887765
No 346
>PRK06949 short chain dehydrogenase; Provisional
Probab=68.89 E-value=31 Score=27.15 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=49.9
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
.+++||=.| |+|..+..+++ ..+.+|++++.+++.++.....+...+ .++.++.+|+.+.. + .
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG---GAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 567888888 55555555443 456789999999887766665554433 35678888876431 0 0
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+.+|+|+.+....
T Consensus 84 ~~~~d~li~~ag~~ 97 (258)
T PRK06949 84 AGTIDILVNNSGVS 97 (258)
T ss_pred cCCCCEEEECCCCC
Confidence 13579999877643
No 347
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.87 E-value=6.6 Score=33.48 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=38.1
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeE---EEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQV---LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v---~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
++..++|+|||.|.++.+++. .+...+ +-+|-...-++.-++...... +.+.-+..|++++
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~---~vi~R~riDI~dL 246 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNS---LVIKRIRIDIEDL 246 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCc---chhheeEeeHHhc
Confidence 346899999999999999885 233334 448887665555554433322 2344455566555
No 348
>PRK07814 short chain dehydrogenase; Provisional
Probab=68.43 E-value=34 Score=27.23 Aligned_cols=76 Identities=14% Similarity=-0.013 Sum_probs=49.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
+++++|=.|+ +|..+..+++ ..+.+|++++.+++.++...+.+...+ .++.++.+|+.+.. +.
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG---RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678888885 5545555443 456799999999877666555554433 35778888876542 11
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|+|+.+...
T Consensus 85 ~~~id~vi~~Ag~ 97 (263)
T PRK07814 85 FGRLDIVVNNVGG 97 (263)
T ss_pred cCCCCEEEECCCC
Confidence 1368999886643
No 349
>PRK06172 short chain dehydrogenase; Provisional
Probab=68.30 E-value=33 Score=26.94 Aligned_cols=76 Identities=14% Similarity=0.020 Sum_probs=49.9
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.|++ |.++..+++ ..+.+|+.++.++.-++...+.+...+ .++.++.+|+.+.. +.
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG---GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56788888864 434444443 456789999999887766666555444 36788888886532 11
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|+||.+...
T Consensus 82 ~g~id~li~~ag~ 94 (253)
T PRK06172 82 YGRLDYAFNNAGI 94 (253)
T ss_pred hCCCCEEEECCCC
Confidence 1367999987765
No 350
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=68.13 E-value=17 Score=30.43 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=44.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CCCCccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD 196 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~sfD 196 (217)
++++||=.| |+|..+..+++ ..+.+|+++|.++........... .+ .++.++.+|+.+.. +....+|
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d 77 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LA---KKIEDHFGDIRDAAKLRKAIAEFKPE 77 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hc---CCceEEEccCCCHHHHHHHHhhcCCC
Confidence 456788777 66766666664 456789999877653322222111 11 35677888876542 2233578
Q ss_pred EEEecccc
Q 027860 197 AVVGTLVL 204 (217)
Q Consensus 197 ~Vi~~~~l 204 (217)
+||.....
T Consensus 78 ~vih~A~~ 85 (349)
T TIGR02622 78 IVFHLAAQ 85 (349)
T ss_pred EEEECCcc
Confidence 88876653
No 351
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.06 E-value=31 Score=27.17 Aligned_cols=76 Identities=16% Similarity=0.017 Sum_probs=49.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.+++||=.|+ +|.++..+++ ..+.+|++++.++.-++...+.+...+ .++.++..|+.+.. +.
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG---RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 4567886664 4445555443 456799999999877766665554444 35778888885431 10
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+..|+||.+...
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 1468999887754
No 352
>PRK06914 short chain dehydrogenase; Provisional
Probab=68.03 E-value=35 Score=27.34 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=47.6
Q ss_pred CCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-C---C-----CC
Q 027860 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V---S-----DA 193 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~---~-----~~ 193 (217)
++.+|=.|+ +|..+..+++ ..+.+|++++.+++.++...+.....+.. .++.++.+|+.+.. + . -+
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQ-QNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 456777774 4444444443 45778999998887666555444433322 36788888886632 1 0 13
Q ss_pred cccEEEeccccc
Q 027860 194 SVDAVVGTLVLC 205 (217)
Q Consensus 194 sfD~Vi~~~~l~ 205 (217)
..|.|+.+....
T Consensus 81 ~id~vv~~ag~~ 92 (280)
T PRK06914 81 RIDLLVNNAGYA 92 (280)
T ss_pred CeeEEEECCccc
Confidence 578888776543
No 353
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.56 E-value=35 Score=26.52 Aligned_cols=77 Identities=16% Similarity=0.062 Sum_probs=49.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.| |+|.++..+++ ..+.+|+.++.++.-++.....+...+ .++.++..|+.+.. +.
T Consensus 6 ~~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 6 QGKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG---VKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456777787 46666666554 456799999998876655544444333 36778888875532 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+..|+||.+....
T Consensus 82 ~~~id~vi~~ag~~ 95 (239)
T PRK07666 82 LGSIDILINNAGIS 95 (239)
T ss_pred cCCccEEEEcCccc
Confidence 13589999877553
No 354
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=67.47 E-value=34 Score=27.04 Aligned_cols=76 Identities=17% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-C----C-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V----S----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~----~----- 191 (217)
+++++|=.| |+|..+..+++ ..+.+|+.++.+..-++...+.+...+ .++.++.+|+.+.. + .
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG---IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 667888888 55556666554 356789999999877766665554443 35678888887642 1 0
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
.+.+|.|+.+...
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1468999887654
No 355
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=67.39 E-value=34 Score=26.62 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=49.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.+++||=.| |+|.++..+++ ..+.+|++++.+...+....+.+...+ .++.++.+|+.+.. +.
T Consensus 5 ~~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG---GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456788666 45666665543 346789999998766655555444443 35788888886532 10
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
-+.+|.|+.+.....
T Consensus 81 ~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 81 FGRLDILVANAGIFP 95 (251)
T ss_pred hCCCCEEEECCCCCC
Confidence 135899888775543
No 356
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.02 E-value=16 Score=31.86 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=42.1
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccEEEe
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~Vi~ 200 (217)
+|+=+|+ |..+..+++ ..+..++++|.+++.++.+++. ..+.++.+|..+.. ..-..+|.|++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR--------LDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------cCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 4555655 777777765 4577899999999887776642 24567788875432 11245777776
Q ss_pred c
Q 027860 201 T 201 (217)
Q Consensus 201 ~ 201 (217)
.
T Consensus 72 ~ 72 (453)
T PRK09496 72 V 72 (453)
T ss_pred e
Confidence 4
No 357
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=66.88 E-value=25 Score=29.10 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.+++||=.|+. |.++..+++ ..+.+|+.++.+..-.+.+.+.+...+ .++.++..|+.+.. +.
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP---DSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC---CceEEEEecCCCHHHHHHHHHHHHHh
Confidence 46678877754 444444443 356789999988776655554442221 36788888886542 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
....|++|.+..+.
T Consensus 81 ~~~iD~li~nAg~~ 94 (322)
T PRK07453 81 GKPLDALVCNAAVY 94 (322)
T ss_pred CCCccEEEECCccc
Confidence 13589999887653
No 358
>PRK08226 short chain dehydrogenase; Provisional
Probab=66.84 E-value=35 Score=26.99 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=47.4
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.|+ +|.++..+++ ..+.+|+.++.++...+.+.+. ...+ .++.++.+|+.+.. +.
T Consensus 5 ~~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 5 TGKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEKLADEL-CGRG---HRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHhC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 5677887775 4555555553 4577899999987644433333 2223 35678888886532 11
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
-+..|+||.+.....
T Consensus 80 ~~~id~vi~~ag~~~ 94 (263)
T PRK08226 80 EGRIDILVNNAGVCR 94 (263)
T ss_pred cCCCCEEEECCCcCC
Confidence 135799998877543
No 359
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=66.74 E-value=13 Score=26.65 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=41.7
Q ss_pred CCCeEEEECCCC-CcchH-HhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIGT-GPNLK-YYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~~~~-~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
+++++|=||+|. |.... .|......+++.+..+.+-.+...+.+ +- ..+.+.. ..++.-.-..+|+||..-
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~--~~~~~~~--~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GG--VNIEAIP--LEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TG--CSEEEEE--GGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---Cc--cccceee--HHHHHHHHhhCCeEEEec
Confidence 789999999863 22222 233344456999999876544444433 11 2344443 334431124699999876
Q ss_pred cccc
Q 027860 203 VLCS 206 (217)
Q Consensus 203 ~l~~ 206 (217)
...+
T Consensus 84 ~~~~ 87 (135)
T PF01488_consen 84 PSGM 87 (135)
T ss_dssp STTS
T ss_pred CCCC
Confidence 5443
No 360
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.62 E-value=36 Score=27.16 Aligned_cols=72 Identities=21% Similarity=0.118 Sum_probs=47.4
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHH-HHHHHHHHHHHcCCCCCCeEEEeccccc-----------cC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRK-MEKYAQTAAVAAGLPLTNFKFLQAVGEA-----------IP 189 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~-~l~~a~~~~~~~~~~~~~i~~~~~d~~~-----------lp 189 (217)
..+.||=.||..|..+..|++ ..+..|++.-.+-+ |-+.+.+ .|+ .....|+.. ..
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~gl-----~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----FGL-----KPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----hCC-----eeEEeccCChHHHHHHHHHHhh
Confidence 567899999999999888886 46778888776544 3333322 333 334444432 12
Q ss_pred CCCCcccEEEeccccc
Q 027860 190 VSDASVDAVVGTLVLC 205 (217)
Q Consensus 190 ~~~~sfD~Vi~~~~l~ 205 (217)
+++++.|+.+.+.+..
T Consensus 77 ~~~Gkld~L~NNAG~~ 92 (289)
T KOG1209|consen 77 NPDGKLDLLYNNAGQS 92 (289)
T ss_pred CCCCceEEEEcCCCCC
Confidence 5778999998876443
No 361
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=66.55 E-value=20 Score=29.35 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=44.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CC--CCcccEE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVDAV 198 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~--~~sfD~V 198 (217)
.+++||=.| |+|..+..+++ ..+.+|++++.+..............+.. ++++++.+|+.+.. +. -..+|.|
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAK-ERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCC-CceEEEeccccCcchHHHHHcCCCEE
Confidence 456777666 57777777664 45678888877654322222211111111 46889999987643 10 1247888
Q ss_pred Eeccc
Q 027860 199 VGTLV 203 (217)
Q Consensus 199 i~~~~ 203 (217)
|....
T Consensus 81 ih~A~ 85 (322)
T PLN02662 81 FHTAS 85 (322)
T ss_pred EEeCC
Confidence 87654
No 362
>PRK05854 short chain dehydrogenase; Provisional
Probab=66.51 E-value=46 Score=27.46 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=50.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----C------C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----V------S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~------~ 191 (217)
.++++|=.|++.| ++..+++ ..+.+|+.++.+.+-.+.+.+.+....- ..++.++..|+.+.. + .
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-DAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 5677887776544 4444443 4567899999988776666555543321 135788888886642 1 1
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
.+..|++|.+.....
T Consensus 91 ~~~iD~li~nAG~~~ 105 (313)
T PRK05854 91 GRPIHLLINNAGVMT 105 (313)
T ss_pred CCCccEEEECCcccc
Confidence 246899998876543
No 363
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.98 E-value=25 Score=27.38 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCCCeEEEECCC-CCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~VLDiGcG-~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
..+..||=+|.= +|.+...+.. ...+|+.+|+.+.|-.... +++.|..+ +-+..+.+|+|+-..
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls-~~~~vtv~Di~p~~r~~lp----------~~v~Fr~~----~~~~~G~~DlivDlT 107 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLS-KADKVTVVDIHPFMRGFLP----------NNVKFRNL----LKFIRGEVDLIVDLT 107 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhc-ccceEEEecCCHHHHhcCC----------CCccHhhh----cCCCCCceeEEEecc
Confidence 467889999863 6776666653 3678999999987644332 45666554 334567889999877
Q ss_pred ccccc
Q 027860 203 VLCSV 207 (217)
Q Consensus 203 ~l~~~ 207 (217)
.|--+
T Consensus 108 GlGG~ 112 (254)
T COG4017 108 GLGGI 112 (254)
T ss_pred ccCCC
Confidence 66554
No 364
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.90 E-value=40 Score=26.42 Aligned_cols=79 Identities=20% Similarity=0.056 Sum_probs=51.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
++++||=.| |+|.++..+++ ..+.++++++.++...+...+.+...+ .++.++.+|+.+.. +.
T Consensus 3 ~~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 3 KGKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG---GKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 345677565 56666666664 357789999999887766655554444 46778888876532 11
Q ss_pred CCcccEEEeccccccc
Q 027860 192 DASVDAVVGTLVLCSV 207 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~~ 207 (217)
.+.+|+||.+....+.
T Consensus 79 ~~~~d~vi~~a~~~~~ 94 (258)
T PRK12429 79 FGGVDILVNNAGIQHV 94 (258)
T ss_pred cCCCCEEEECCCCCCC
Confidence 1358999887755443
No 365
>PRK07063 short chain dehydrogenase; Provisional
Probab=65.68 E-value=40 Score=26.61 Aligned_cols=79 Identities=15% Similarity=0.018 Sum_probs=51.4
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.|++. .++..+++ ..+.+|+.++.+++.++...+.+...+.. .++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAG-ARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567888888654 34444443 45778999999988777776666542111 46778888886532 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+.+|.+|.+....
T Consensus 84 ~g~id~li~~ag~~ 97 (260)
T PRK07063 84 FGPLDVLVNNAGIN 97 (260)
T ss_pred hCCCcEEEECCCcC
Confidence 14689999887654
No 366
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=65.18 E-value=44 Score=26.07 Aligned_cols=76 Identities=20% Similarity=0.096 Sum_probs=48.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
+++++|=.|+ +|..+..+++ ..+.+|+.++.+........+.....+ .++.++.+|+.+.. +.
T Consensus 2 ~~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 2 KDKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG---GNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4567888875 4545555443 456789999999877666655554433 36788888886532 10
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+..|+||.+...
T Consensus 78 ~~~~d~vi~~ag~ 90 (250)
T TIGR03206 78 LGPVDVLVNNAGW 90 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1357988877754
No 367
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.16 E-value=12 Score=33.65 Aligned_cols=42 Identities=26% Similarity=0.258 Sum_probs=32.4
Q ss_pred CCCeEEEECCCC-CcchHHhhhCCCCeEEEEcCCHHHHHHHHH
Q 027860 125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~giD~S~~~l~~a~~ 166 (217)
++.+||=+|+|. |.....+++..+..++++|.++..++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 568999999985 455555666677789999999997776665
No 368
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.10 E-value=13 Score=29.24 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=33.9
Q ss_pred CCCCeEEEECCCC-CcchHHhhhCCCCeEEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG~-G~~~~~la~~~~~~v~giD~S~~~l~~a~~ 166 (217)
.++.+||-.|+|. |..+..+++..+.++++++.++...+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 3778999999885 666666776677899999999887777654
No 369
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=64.61 E-value=6.4 Score=31.24 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=54.9
Q ss_pred CCCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-------CCCCCcc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-------PVSDASV 195 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-------p~~~~sf 195 (217)
.++...+|+--|.|..+..+.+ .+..+++++|..|-+-+.|+-..++.- + +.+..+.+++..+ .+.+.+|
T Consensus 42 v~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~-~-~~l~a~Lg~Fs~~~~l~~~~gl~~~~v 119 (303)
T KOG2782|consen 42 VRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELM-H-PTLKAVLGNFSYIKSLIADTGLLDVGV 119 (303)
T ss_pred CCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhc-c-hhHHHHHhhhHHHHHHHHHhCCCcCCc
Confidence 3788999999999999998876 566788999999988887775543211 1 2222233333322 2556788
Q ss_pred cEEEeccccccc
Q 027860 196 DAVVGTLVLCSV 207 (217)
Q Consensus 196 D~Vi~~~~l~~~ 207 (217)
|-|+.-+....+
T Consensus 120 DGiLmDlGcSSM 131 (303)
T KOG2782|consen 120 DGILMDLGCSSM 131 (303)
T ss_pred ceEEeecCcccc
Confidence 888876655443
No 370
>PRK12939 short chain dehydrogenase; Provisional
Probab=64.53 E-value=39 Score=26.30 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=49.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CCC----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSD---- 192 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~---- 192 (217)
+++++|=.| |+|..+..+++ ..+.++++++.+++.+....+.+...+ .++.++.+|+.+.. +..
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG---GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467788666 45555555553 456789999998877766655554443 36788888886532 111
Q ss_pred -CcccEEEecccc
Q 027860 193 -ASVDAVVGTLVL 204 (217)
Q Consensus 193 -~sfD~Vi~~~~l 204 (217)
+.+|+|+.+...
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 468999887654
No 371
>PRK07677 short chain dehydrogenase; Provisional
Probab=64.52 E-value=30 Score=27.26 Aligned_cols=74 Identities=16% Similarity=0.043 Sum_probs=46.5
Q ss_pred CeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----CCC
Q 027860 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDA 193 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~~~ 193 (217)
+++|=.|++.| ++..+++ ..+.++++++.++..++...+.+...+ .++.++.+|+.+.. + .-+
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP---GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 56777776444 4443332 456789999999877766665554433 36778888875431 0 014
Q ss_pred cccEEEecccc
Q 027860 194 SVDAVVGTLVL 204 (217)
Q Consensus 194 sfD~Vi~~~~l 204 (217)
..|.||.+...
T Consensus 78 ~id~lI~~ag~ 88 (252)
T PRK07677 78 RIDALINNAAG 88 (252)
T ss_pred CccEEEECCCC
Confidence 68999987653
No 372
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=64.49 E-value=27 Score=29.09 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=35.5
Q ss_pred CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA 168 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~ 168 (217)
+.+.+|.-||.|....+.+++.. ...+..+|+++.-+...+-++
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHH
Confidence 47889999999988888888754 458999999998877666444
No 373
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=64.41 E-value=21 Score=29.48 Aligned_cols=79 Identities=14% Similarity=0.030 Sum_probs=46.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CC--CCcccEE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVDAV 198 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~--~~sfD~V 198 (217)
.+++||=.| |+|..+..+++ ..+.+|++++.+..............+.. .+++++.+|+.+.. +. -..+|+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAK-ERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCC-CceEEEeCCCCCchHHHHHHcCCCEE
Confidence 456788777 66776666664 45678877766654333332222111211 36788899887653 11 0247988
Q ss_pred Eeccccc
Q 027860 199 VGTLVLC 205 (217)
Q Consensus 199 i~~~~l~ 205 (217)
+.+....
T Consensus 82 ih~A~~~ 88 (325)
T PLN02989 82 FHTASPV 88 (325)
T ss_pred EEeCCCC
Confidence 8877543
No 374
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.37 E-value=28 Score=27.20 Aligned_cols=76 Identities=14% Similarity=0.060 Sum_probs=48.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
+++++|=.|+ .|.++..+++ ..+..++.+|.++.-++.+.+.+...+ .++.++..|+.+.. +.
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5678888875 3434444432 456789999999877766666555444 36777888875431 00
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|.||.+...
T Consensus 80 ~~~id~vi~~ag~ 92 (253)
T PRK08217 80 FGQLNGLINNAGI 92 (253)
T ss_pred cCCCCEEEECCCc
Confidence 1468999987653
No 375
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=64.19 E-value=24 Score=29.20 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCCeEEEECCCC-CcchHHhhhCCCC-eEEEEcCCHHHHHHHHH
Q 027860 125 KAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~~~~~la~~~~~-~v~giD~S~~~l~~a~~ 166 (217)
++.+||-.|+|. |..+..+++..+. .+++++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 677888888765 6666667766676 79999999888776554
No 376
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.96 E-value=36 Score=28.26 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=56.2
Q ss_pred CCCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----------C
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V 190 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----------~ 190 (217)
-.+..||==|.|.| +++.++. +.+..++..|++++......+.+.+.| .+.....|+.+.. -
T Consensus 36 v~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 36 VSGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG----EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred ccCCEEEEeCCCch-HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC----ceeEEEecCCCHHHHHHHHHHHHH
Confidence 36788888888877 3333332 456689999999998888777776665 4677777775532 2
Q ss_pred CCCcccEEEeccccccccC
Q 027860 191 SDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 191 ~~~sfD~Vi~~~~l~~~~d 209 (217)
+-+.+|++|.+.++-+...
T Consensus 111 e~G~V~ILVNNAGI~~~~~ 129 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTGKK 129 (300)
T ss_pred hcCCceEEEeccccccCCC
Confidence 2367999999887665543
No 377
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.40 E-value=46 Score=25.77 Aligned_cols=74 Identities=20% Similarity=0.098 Sum_probs=46.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
++++||=.|++ |..+..+++ ..+.+|++++.++.-+....+..... .++.++.+|+.+.. +.
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888865 444444443 45779999999987666554444332 25678888876532 00
Q ss_pred CCcccEEEeccc
Q 027860 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~Vi~~~~ 203 (217)
-+.+|.|+.+..
T Consensus 79 ~~~id~ii~~ag 90 (238)
T PRK05786 79 LNAIDGLVVTVG 90 (238)
T ss_pred hCCCCEEEEcCC
Confidence 134688877664
No 378
>PRK06181 short chain dehydrogenase; Provisional
Probab=63.37 E-value=43 Score=26.47 Aligned_cols=76 Identities=12% Similarity=0.035 Sum_probs=47.2
Q ss_pred CeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----CC
Q 027860 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----DA 193 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-----~~ 193 (217)
++||=.| |+|.++..+++ ..+.+|++++.++.-.+...+.+...+ .++.++.+|+.+.. +. -+
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG---GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3567566 44555555443 456789999999876665555544433 36778888876542 10 13
Q ss_pred cccEEEecccccc
Q 027860 194 SVDAVVGTLVLCS 206 (217)
Q Consensus 194 sfD~Vi~~~~l~~ 206 (217)
..|.|+.+.....
T Consensus 78 ~id~vi~~ag~~~ 90 (263)
T PRK06181 78 GIDILVNNAGITM 90 (263)
T ss_pred CCCEEEECCCccc
Confidence 5799988765543
No 379
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=63.33 E-value=19 Score=28.10 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=46.0
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHH------HHHHHHHcCCCCCCeEEEeccccccCCCCCcc
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKY------AQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~------a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 195 (217)
.++.+|+|+=-|.|+++..++. .+...|++.-+.+...-. .+....+... .|.+.+-.+...++ +.+..
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~--aN~e~~~~~~~A~~-~pq~~ 123 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY--ANVEVIGKPLVALG-APQKL 123 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh--hhhhhhCCcccccC-CCCcc
Confidence 4889999999999999999886 334477777666541111 1111111222 34555555555565 55667
Q ss_pred cEEEecc
Q 027860 196 DAVVGTL 202 (217)
Q Consensus 196 D~Vi~~~ 202 (217)
|+++...
T Consensus 124 d~~~~~~ 130 (238)
T COG4798 124 DLVPTAQ 130 (238)
T ss_pred cccccch
Confidence 7777644
No 380
>PRK05855 short chain dehydrogenase; Validated
Probab=63.18 E-value=47 Score=29.65 Aligned_cols=78 Identities=15% Similarity=0.045 Sum_probs=52.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
.+.++|=+|+ +|.++..+++ ..+.+|+.++.+...++...+.+...+ .++.++.+|+.+.. + .
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG---AVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4567777775 5555555543 456789999999887776666655544 36788888886642 1 1
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
.+.+|++|.+.++.+
T Consensus 390 ~g~id~lv~~Ag~~~ 404 (582)
T PRK05855 390 HGVPDIVVNNAGIGM 404 (582)
T ss_pred cCCCcEEEECCccCC
Confidence 246899999887644
No 381
>PRK07102 short chain dehydrogenase; Provisional
Probab=63.01 E-value=42 Score=26.21 Aligned_cols=74 Identities=16% Similarity=0.039 Sum_probs=45.7
Q ss_pred CeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC--CCccc
Q 027860 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS--DASVD 196 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--~~sfD 196 (217)
++||=.| |+|.++..+++ ..+.+|++++.++.-.+...+.+...+- .++.++.+|+.+.. +. ...+|
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA--VAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 3677666 45555555554 4567899999998766554444333221 46888999887642 11 12479
Q ss_pred EEEeccc
Q 027860 197 AVVGTLV 203 (217)
Q Consensus 197 ~Vi~~~~ 203 (217)
+++.+..
T Consensus 79 ~vv~~ag 85 (243)
T PRK07102 79 IVLIAVG 85 (243)
T ss_pred EEEECCc
Confidence 9987654
No 382
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=62.88 E-value=32 Score=28.82 Aligned_cols=78 Identities=19% Similarity=0.105 Sum_probs=46.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHH----HHHHHHHHHcCCCCCCeEEEeccccccC-CC--CCc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKME----KYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DAS 194 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l----~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~--~~s 194 (217)
+.++||=.| |+|..+..+++ ..+.+|+++|...... ...........+ .++.++.+|+.+.. +. -..
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQW--SRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccC--CceEEEEccCCCHHHHHHHhhC
Confidence 567888877 88888877775 3467899999754321 111111111111 35789999997642 10 124
Q ss_pred ccEEEeccccc
Q 027860 195 VDAVVGTLVLC 205 (217)
Q Consensus 195 fD~Vi~~~~l~ 205 (217)
+|+||-.....
T Consensus 91 ~d~ViHlAa~~ 101 (348)
T PRK15181 91 VDYVLHQAALG 101 (348)
T ss_pred CCEEEECcccc
Confidence 79888876553
No 383
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=62.69 E-value=30 Score=27.32 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=41.1
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----CCCCcccEEEe
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~sfD~Vi~ 200 (217)
+++=+||| .++..+++ ..+..|+.||.+++.++...... .....+++|+.+.. ..-..+|+++.
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~-------~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFLADE-------LDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh-------cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 45556665 44444443 56779999999999877743310 25678888886642 22246888876
Q ss_pred c
Q 027860 201 T 201 (217)
Q Consensus 201 ~ 201 (217)
.
T Consensus 73 ~ 73 (225)
T COG0569 73 A 73 (225)
T ss_pred e
Confidence 4
No 384
>PRK08643 acetoin reductase; Validated
Probab=62.43 E-value=47 Score=26.09 Aligned_cols=74 Identities=19% Similarity=0.047 Sum_probs=47.1
Q ss_pred CeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----CC
Q 027860 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----DA 193 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-----~~ 193 (217)
+.+|=.| |+|.++..+++ ..+.+|+.++.+...++...+.+...+ .++.++.+|+.+.. +. .+
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG---GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4566666 44445554443 457789999999877766666554443 35678888886542 11 14
Q ss_pred cccEEEecccc
Q 027860 194 SVDAVVGTLVL 204 (217)
Q Consensus 194 sfD~Vi~~~~l 204 (217)
..|++|.+...
T Consensus 79 ~id~vi~~ag~ 89 (256)
T PRK08643 79 DLNVVVNNAGV 89 (256)
T ss_pred CCCEEEECCCC
Confidence 68999887654
No 385
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.32 E-value=39 Score=29.80 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=43.4
Q ss_pred CCCeEEEECCC-CCcchHHhhhCCCCeEEEEcCCHH-HHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRK-MEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~~~~~la~~~~~~v~giD~S~~-~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
.+++|+=||.| .|..+..+....+.+|+++|.++. ......+.+++.| +.+..++...+ ...+|+||..-
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g-----v~~~~~~~~~~---~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG-----ATVRLGPGPTL---PEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC-----CEEEECCCccc---cCCCCEEEECC
Confidence 56789999987 444333333456778999996653 3333334455555 34554443322 23589998876
Q ss_pred ccc
Q 027860 203 VLC 205 (217)
Q Consensus 203 ~l~ 205 (217)
++.
T Consensus 87 Gi~ 89 (480)
T PRK01438 87 GWR 89 (480)
T ss_pred CcC
Confidence 654
No 386
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=62.22 E-value=46 Score=23.97 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCeEEEECCCCCcchHHhh----hCCCCeEEEEcCCHHHHHHHHHH
Q 027860 125 KAKKVLEIGIGTGPNLKYYA----ADTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la----~~~~~~v~giD~S~~~l~~a~~~ 167 (217)
.+.+|+=+|+| ..+..++ +.....++.+|.+++..+...+.
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 57889999986 3333333 22246899999998766554444
No 387
>PRK06196 oxidoreductase; Provisional
Probab=62.20 E-value=35 Score=28.13 Aligned_cols=73 Identities=8% Similarity=0.009 Sum_probs=47.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
.+++||=.|+ +|.++..+++ ..+.+|++++.+++.++.+.+.+ ..+.++.+|+.+.. + .
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l-------~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI-------DGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------hhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 5677887775 4555555554 45678999999877665544332 13567888886642 1 1
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
.+..|++|.+..+.
T Consensus 97 ~~~iD~li~nAg~~ 110 (315)
T PRK06196 97 GRRIDILINNAGVM 110 (315)
T ss_pred CCCCCEEEECCCCC
Confidence 14689999887653
No 388
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=62.01 E-value=31 Score=26.70 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCeEEEECCC-CCcc-hHHhhhCCCCeEEEEcCC
Q 027860 125 KAKKVLEIGIG-TGPN-LKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~~-~~~la~~~~~~v~giD~S 157 (217)
...+||=+||| .|.. +..|+..+..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 67899999998 3543 444554445588888877
No 389
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.84 E-value=44 Score=26.01 Aligned_cols=75 Identities=19% Similarity=0.093 Sum_probs=47.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-C----C-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V----S----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~----~----- 191 (217)
++++||=+|+ +|.++..+++ ..+.+|++++.++.-++.....+.. + .++.++.+|+.+.. + .
T Consensus 4 ~~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 4 EGKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G---GRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567777774 4445554443 4567899999998766665554433 2 35778888886542 1 0
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-..+|+||.+...
T Consensus 79 ~~~~d~vi~~ag~ 91 (251)
T PRK07231 79 FGSVDILVNNAGT 91 (251)
T ss_pred hCCCCEEEECCCC
Confidence 1357999987765
No 390
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=61.78 E-value=29 Score=29.23 Aligned_cols=80 Identities=19% Similarity=0.047 Sum_probs=47.5
Q ss_pred CCeEEEECCCCCcchHHhh---hCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CCCCcccE
Q 027860 126 AKKVLEIGIGTGPNLKYYA---ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVDA 197 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la---~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~sfD~ 197 (217)
+.+||=.| |.|+.+...+ ...+..|+++|-=-+....+-++.++.-.....+.|..+|+.+.+ |....||.
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~ 80 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA 80 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence 34677666 7776654422 255778888884333222222222222221257999999998765 66677888
Q ss_pred EEecccccc
Q 027860 198 VVGTLVLCS 206 (217)
Q Consensus 198 Vi~~~~l~~ 206 (217)
|+-..++-.
T Consensus 81 V~Hfa~~~~ 89 (343)
T KOG1371|consen 81 VMHFAALAA 89 (343)
T ss_pred EEeehhhhc
Confidence 887665543
No 391
>PRK05866 short chain dehydrogenase; Provisional
Probab=61.15 E-value=50 Score=26.98 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=49.7
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
.+++||=.|++ |.++..+++ ..+.+|+.++.+.+.++...+.+...+ ..+.++.+|+.+.. + .
T Consensus 39 ~~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~---~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 39 TGKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG---GDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45678877754 444444443 456799999999887776666554443 35678888876532 1 1
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+..|+||.+.+..
T Consensus 115 ~g~id~li~~AG~~ 128 (293)
T PRK05866 115 IGGVDILINNAGRS 128 (293)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999877554
No 392
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=61.05 E-value=9.3 Score=29.27 Aligned_cols=31 Identities=29% Similarity=0.246 Sum_probs=19.3
Q ss_pred CCCcchHHhhh---CCCCeEEEEcCCHHHHHHHH
Q 027860 135 GTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQ 165 (217)
Q Consensus 135 G~G~~~~~la~---~~~~~v~giD~S~~~l~~a~ 165 (217)
|.|+.+..++. ..+.+|+|+|++++.++..+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 55555554442 56789999999999877765
No 393
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=60.16 E-value=17 Score=30.71 Aligned_cols=43 Identities=23% Similarity=0.172 Sum_probs=33.6
Q ss_pred CCCeEEEECCCC-CcchHHhhh-CCCCeEEEEcCCHHHHHHHHHH
Q 027860 125 KAKKVLEIGIGT-GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~ 167 (217)
++.+|+=+|||. |.++..+++ .+..+++.+|.+++-++.|++.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence 444899999995 555555655 4456899999999999999985
No 394
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=59.95 E-value=57 Score=25.68 Aligned_cols=76 Identities=17% Similarity=0.037 Sum_probs=49.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-C---------C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V---------S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~---------~ 191 (217)
.+++||=.|++.| ++..+++ ..+.+++.++.+...++...+.....+ .++.++..|+.+.. + .
T Consensus 10 ~~k~vlVtG~s~g-IG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG---GQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5788999996544 4444332 456789999988877766655544433 35677788876542 0 0
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|+|+.+...
T Consensus 86 ~~~~d~li~~ag~ 98 (255)
T PRK06113 86 LGKVDILVNNAGG 98 (255)
T ss_pred cCCCCEEEECCCC
Confidence 1468999887654
No 395
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=59.53 E-value=55 Score=25.56 Aligned_cols=74 Identities=18% Similarity=0.056 Sum_probs=47.1
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--------C--CCCc
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V--SDAS 194 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------~--~~~s 194 (217)
+||=.| |+|.++..+++ ..+.++++++.++...+.........+ .++.++.+|+.+.. + ....
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG---GSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 455555 56666666664 356789999999876666655544333 35778888886542 0 1135
Q ss_pred ccEEEeccccc
Q 027860 195 VDAVVGTLVLC 205 (217)
Q Consensus 195 fD~Vi~~~~l~ 205 (217)
.|+||.+...-
T Consensus 79 ~d~vi~~a~~~ 89 (255)
T TIGR01963 79 LDILVNNAGIQ 89 (255)
T ss_pred CCEEEECCCCC
Confidence 78888876543
No 396
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=59.46 E-value=28 Score=30.09 Aligned_cols=72 Identities=19% Similarity=0.160 Sum_probs=46.1
Q ss_pred CeEEEECCCC-CcchHH-hhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CC--CCcccEEEec
Q 027860 127 KKVLEIGIGT-GPNLKY-YAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVDAVVGT 201 (217)
Q Consensus 127 ~~VLDiGcG~-G~~~~~-la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~--~~sfD~Vi~~ 201 (217)
++||=||||. |..... +++....+|+..|.|.+.++.+..... ++++..+.|+.+.+ +. =..+|+||..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~------~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG------GKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc------ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 4689999952 333333 344445799999999887776665421 35778888887764 10 1345999886
Q ss_pred ccc
Q 027860 202 LVL 204 (217)
Q Consensus 202 ~~l 204 (217)
.-.
T Consensus 76 ~p~ 78 (389)
T COG1748 76 APP 78 (389)
T ss_pred CCc
Confidence 543
No 397
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=59.21 E-value=3.7 Score=27.76 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=11.8
Q ss_pred EEEECCCCCcchHHhh
Q 027860 129 VLEIGIGTGPNLKYYA 144 (217)
Q Consensus 129 VLDiGcG~G~~~~~la 144 (217)
-+|||||.|.......
T Consensus 6 NIDIGcG~GNTmda~f 21 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAF 21 (124)
T ss_pred ccccccCCCcchhhhh
Confidence 4799999997655443
No 398
>PRK07478 short chain dehydrogenase; Provisional
Probab=59.20 E-value=56 Score=25.67 Aligned_cols=77 Identities=12% Similarity=-0.047 Sum_probs=49.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.|++ |.++..+++ ..+.+++.++.++.-++...+.+...+ .++.++.+|+.+.. +.
T Consensus 5 ~~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 5 NGKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG---GEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 45677867654 434444443 456789999999887776666655544 35778888876532 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+..|++|.+....
T Consensus 81 ~~~id~li~~ag~~ 94 (254)
T PRK07478 81 FGGLDIAFNNAGTL 94 (254)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999877653
No 399
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=59.19 E-value=42 Score=28.62 Aligned_cols=74 Identities=24% Similarity=0.231 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027860 106 SYEAEVAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~--~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~ 183 (217)
.|+.....+...+.+.++ ..+..|+-++.|.|.+...+++ .+.+++|+|-.-. ++.|+++.. ....++|
T Consensus 220 ~~~~f~~~~~~~i~~~vk~~~~~~pii~f~~ga~~~l~~m~~-~g~d~l~vdw~v~-l~~a~~~~~-------~~~~lqG 290 (352)
T COG0407 220 DYDEFVLPYMKRIVREVKEVKGGVPVIHFCKGAGHLLEDMAK-TGFDVLGVDWRVD-LKEAKKRLG-------DKVALQG 290 (352)
T ss_pred cHHHHhhhHHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHHh-cCCcEEeeccccC-HHHHHHHhC-------CCceEEe
Confidence 455555566667777776 3346899999999999999974 4578999999877 777777642 1246777
Q ss_pred ccccc
Q 027860 184 VGEAI 188 (217)
Q Consensus 184 d~~~l 188 (217)
++...
T Consensus 291 NldP~ 295 (352)
T COG0407 291 NLDPA 295 (352)
T ss_pred ccChH
Confidence 77663
No 400
>PRK07576 short chain dehydrogenase; Provisional
Probab=59.15 E-value=39 Score=26.93 Aligned_cols=76 Identities=16% Similarity=0.003 Sum_probs=47.8
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
+++++|=.|. +|..+..+++ ..+..|++++.+++-++...+.+...+ .++.++..|+.+.. +.
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG---PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678888885 4444444432 457789999999877666555444433 35677888876432 11
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
...+|++|.+...
T Consensus 84 ~~~iD~vi~~ag~ 96 (264)
T PRK07576 84 FGPIDVLVSGAAG 96 (264)
T ss_pred cCCCCEEEECCCC
Confidence 1358999876643
No 401
>PRK09072 short chain dehydrogenase; Provisional
Probab=59.13 E-value=56 Score=25.87 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=48.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C----CC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SD 192 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~----~~ 192 (217)
+++++|=.|++ |.++..+++ ..+.+|++++.+++-++...+.+ ..+ .++.++.+|+.+.. + .-
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP---GRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC---CceEEEEccCCCHHHHHHHHHHHHhc
Confidence 45677777754 334444432 45778999999987776665544 222 46788888886542 0 01
Q ss_pred CcccEEEecccccc
Q 027860 193 ASVDAVVGTLVLCS 206 (217)
Q Consensus 193 ~sfD~Vi~~~~l~~ 206 (217)
+..|.|+.+.....
T Consensus 79 ~~id~lv~~ag~~~ 92 (263)
T PRK09072 79 GGINVLINNAGVNH 92 (263)
T ss_pred CCCCEEEECCCCCC
Confidence 45799998776543
No 402
>PRK05876 short chain dehydrogenase; Provisional
Probab=58.95 E-value=58 Score=26.22 Aligned_cols=77 Identities=12% Similarity=-0.035 Sum_probs=49.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.|++ |.++..+++ ..+.+|+.+|.++..++...+.+...+ .++.++..|+.+.. +.
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG---FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 56678877755 444555443 456789999999877766655554444 35677888886532 10
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+..|++|.+..+.
T Consensus 81 ~g~id~li~nAg~~ 94 (275)
T PRK05876 81 LGHVDVVFSNAGIV 94 (275)
T ss_pred cCCCCEEEECCCcC
Confidence 13579999887654
No 403
>PRK06720 hypothetical protein; Provisional
Probab=58.87 E-value=63 Score=24.19 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC---------C-C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---------V-S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp---------~-~ 191 (217)
+++.+|=.|.+.| .+..++. ..+.+++.+|.+...++...+.+...+ ..+.++..|+.+.. . .
T Consensus 15 ~gk~~lVTGa~~G-IG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 15 AGKVAIVTGGGIG-IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG---GEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred CCCEEEEecCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5677888886554 2222222 456789999998877665555544433 34566777775431 0 1
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
-+..|+++.+..+..
T Consensus 91 ~G~iDilVnnAG~~~ 105 (169)
T PRK06720 91 FSRIDMLFQNAGLYK 105 (169)
T ss_pred cCCCCEEEECCCcCC
Confidence 146899998876544
No 404
>PRK07035 short chain dehydrogenase; Provisional
Probab=58.82 E-value=55 Score=25.65 Aligned_cols=76 Identities=18% Similarity=0.124 Sum_probs=48.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.+++||=.|++.| ++..+++ ..+.+|++++.+...++...+.+...+ .++.++..|+.+.. +.
T Consensus 7 ~~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 7 TGKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG---GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5667888886654 3444332 456799999999877766666554444 35667777775432 00
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|+++.+...
T Consensus 83 ~~~id~li~~ag~ 95 (252)
T PRK07035 83 HGRLDILVNNAAA 95 (252)
T ss_pred cCCCCEEEECCCc
Confidence 1358999977653
No 405
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=58.02 E-value=54 Score=25.63 Aligned_cols=77 Identities=14% Similarity=0.019 Sum_probs=47.9
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----------C-
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V- 190 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----------~- 190 (217)
++++||=.|+ +|.++..+++ ..+.+|+++|.+...++...+.+...+. .++.++..|+.... +
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG--PQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC--CCceEEEecccCCCHHHHHHHHHHHH
Confidence 6778888884 5555555543 3467999999998776665555544432 34566666664210 0
Q ss_pred -CCCcccEEEecccc
Q 027860 191 -SDASVDAVVGTLVL 204 (217)
Q Consensus 191 -~~~sfD~Vi~~~~l 204 (217)
.-+..|.||.+...
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 01468999887654
No 406
>PRK12829 short chain dehydrogenase; Provisional
Probab=57.74 E-value=65 Score=25.32 Aligned_cols=74 Identities=12% Similarity=0.002 Sum_probs=46.9
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
+++++|=.|++ |.++..+++ ..+.+|++++.++..++...+...+ .++.++.+|+.+.. +.
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----AKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 77889988864 555655553 4567899999988766554433211 14567788876532 11
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|.||.+...
T Consensus 84 ~~~~d~vi~~ag~ 96 (264)
T PRK12829 84 FGGLDVLVNNAGI 96 (264)
T ss_pred hCCCCEEEECCCC
Confidence 1368999887654
No 407
>PRK07774 short chain dehydrogenase; Provisional
Probab=57.67 E-value=67 Score=25.03 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=48.2
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-C----C-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V----S----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~----~----- 191 (217)
.++++|=.| |+|..+..+++ ..+.++++++.++..+....+.+...+ .++.++..|+.+.. + .
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG---GTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456788777 55555555553 456789999998766655544443332 35667888876542 0 0
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|+||.+...
T Consensus 81 ~~~id~vi~~ag~ 93 (250)
T PRK07774 81 FGGIDYLVNNAAI 93 (250)
T ss_pred hCCCCEEEECCCC
Confidence 1358999987765
No 408
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=57.66 E-value=52 Score=26.00 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=46.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.|++.| ++..+++ ..+.+++.++.+.. +...+.....+ .++.++.+|+.+.. +.
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 7 NGKVAIITGCNTG-LGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG---RKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 5778898886544 4444443 46778888887542 23333333333 35778888886542 11
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
-+..|+++.+..+..
T Consensus 81 ~g~iD~lv~~ag~~~ 95 (251)
T PRK12481 81 MGHIDILINNAGIIR 95 (251)
T ss_pred cCCCCEEEECCCcCC
Confidence 146899998876543
No 409
>PRK08251 short chain dehydrogenase; Provisional
Probab=57.50 E-value=68 Score=24.99 Aligned_cols=78 Identities=10% Similarity=-0.065 Sum_probs=49.0
Q ss_pred CCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-C---------CC
Q 027860 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V---------SD 192 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~---------~~ 192 (217)
++++|=.| |+|.++..+++ ..+.+++.++.++..++.....+....-. .++.++.+|+.+.. + .-
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPG-IKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCC-ceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34677677 55656665554 34578999999988776665554332211 35788888887642 0 11
Q ss_pred CcccEEEeccccc
Q 027860 193 ASVDAVVGTLVLC 205 (217)
Q Consensus 193 ~sfD~Vi~~~~l~ 205 (217)
+..|.|+.+.++.
T Consensus 80 ~~id~vi~~ag~~ 92 (248)
T PRK08251 80 GGLDRVIVNAGIG 92 (248)
T ss_pred CCCCEEEECCCcC
Confidence 3579998877654
No 410
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=56.88 E-value=1.1e+02 Score=25.07 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=24.6
Q ss_pred HHHHhcCCCCeEEEECCC-CCcchHH-hhhCCCCeEEEEcCC
Q 027860 118 LFDNLRGKAKKVLEIGIG-TGPNLKY-YAADTDVQVLGVDPN 157 (217)
Q Consensus 118 ~~~~l~~~~~~VLDiGcG-~G~~~~~-la~~~~~~v~giD~S 157 (217)
-++.+ ...+|+=+||| .|..... |+..+-.+++.+|..
T Consensus 24 ~~~kL--~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 24 ALQLF--ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHHHh--cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34455 77799999998 5554444 444443577777765
No 411
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=56.60 E-value=31 Score=27.45 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=36.4
Q ss_pred HHHHHHhcC-CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHH
Q 027860 116 SQLFDNLRG-KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA 170 (217)
Q Consensus 116 ~~~~~~l~~-~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~ 170 (217)
..+.+.++. ...+++|.=||+|..+..+.. .+..++.-|+++..+...+..+..
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHhc
Confidence 334455543 688999999999998877753 677899999999988888755443
No 412
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=56.35 E-value=69 Score=24.67 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=48.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
++++||=.|+ +|.++..+++ ..+..+++++.++...+.....+...+ .++.++.+|+.+.. +.
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG---GEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467886664 6666666554 346679999999876665555544444 35778888886531 11
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-...|.|+.....
T Consensus 80 ~~~id~vi~~ag~ 92 (246)
T PRK05653 80 FGALDILVNNAGI 92 (246)
T ss_pred hCCCCEEEECCCc
Confidence 1356888876644
No 413
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=55.67 E-value=27 Score=28.02 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCCeEEEECCCCCc---chHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~---~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++.+|=+|.-.|. .+..|+ ..+..+.+||-+.+.++.-.+. .... +...+.|++.|+..-. |.
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll-~kgik~~~i~~~~En~~a~akL-~ai~-p~~~v~F~~~DVt~~~~~~~~f~ki~~~ 80 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALL-EKGIKVLVIDDSEENPEAIAKL-QAIN-PSVSVIFIKCDVTNRGDLEAAFDKILAT 80 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHH-HcCchheeehhhhhCHHHHHHH-hccC-CCceEEEEEeccccHHHHHHHHHHHHHH
Confidence 46777877754442 222333 4577889999988875544433 2222 2367889999986531 11
Q ss_pred CCcccEEEeccccccccChhhhcc
Q 027860 192 DASVDAVVGTLVLCSVKDVDMTLQ 215 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~~~d~~~~L~ 215 (217)
=+..|++|....+..-.|.+++|.
T Consensus 81 fg~iDIlINgAGi~~dkd~e~Ti~ 104 (261)
T KOG4169|consen 81 FGTIDILINGAGILDDKDWERTIN 104 (261)
T ss_pred hCceEEEEcccccccchhHHHhhc
Confidence 157899999998888777777653
No 414
>PRK06940 short chain dehydrogenase; Provisional
Probab=55.48 E-value=53 Score=26.46 Aligned_cols=73 Identities=21% Similarity=0.089 Sum_probs=45.1
Q ss_pred eEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC----CCccc
Q 027860 128 KVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----DASVD 196 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----~~sfD 196 (217)
.+|=-|+ |.++..+++ ..+.+|+.+|.++.-++...+.+...+ .++.++..|+.+.. +. .+.+|
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 4454454 345555554 246789999998876665555554433 35677888875532 11 14689
Q ss_pred EEEeccccc
Q 027860 197 AVVGTLVLC 205 (217)
Q Consensus 197 ~Vi~~~~l~ 205 (217)
++|.+..+.
T Consensus 79 ~li~nAG~~ 87 (275)
T PRK06940 79 GLVHTAGVS 87 (275)
T ss_pred EEEECCCcC
Confidence 999887654
No 415
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=55.04 E-value=21 Score=27.08 Aligned_cols=40 Identities=23% Similarity=0.099 Sum_probs=25.7
Q ss_pred EEEECCCCCcchHHhh---hCCCCeEEEEcCCHHHHHHHHHHHHH
Q 027860 129 VLEIGIGTGPNLKYYA---ADTDVQVLGVDPNRKMEKYAQTAAVA 170 (217)
Q Consensus 129 VLDiGcG~G~~~~~la---~~~~~~v~giD~S~~~l~~a~~~~~~ 170 (217)
|-=||+| ..+..++ ...+.+|+.+|.+++.++.+++++..
T Consensus 2 V~ViGaG--~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAG--TMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCC--HHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 3445664 3333333 24588999999999999988876644
No 416
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=54.96 E-value=66 Score=27.61 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=52.3
Q ss_pred CCCCeEEEECCCCCcchHHhhhC---C--CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-C-------
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAAD---T--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V------- 190 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~~---~--~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~------- 190 (217)
.++.+|||+.+..|.-+..+.+. . ...+++=|.+..-+......+..... +++.+...|+...| .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~--~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS--PNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC--cceeeecccceeccccccccCch
Confidence 48999999999999888776652 1 23799999999888877777643332 45566666665554 1
Q ss_pred -CCCcccEEEe
Q 027860 191 -SDASVDAVVG 200 (217)
Q Consensus 191 -~~~sfD~Vi~ 200 (217)
....||-|++
T Consensus 232 ~~~~~fDrVLv 242 (375)
T KOG2198|consen 232 KEQLKFDRVLV 242 (375)
T ss_pred hhhhhcceeEE
Confidence 2246888775
No 417
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=54.88 E-value=74 Score=25.02 Aligned_cols=77 Identities=13% Similarity=-0.061 Sum_probs=46.2
Q ss_pred CeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----CC
Q 027860 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----DA 193 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-----~~ 193 (217)
++||=.|+ +|.++..+++ ..+..++.+|.+...++...+.+....-. .++.++.+|+.+.. +. -+
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGE-GMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCC-ceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46777774 4555554443 45678999999887665554443322110 25778888876531 10 14
Q ss_pred cccEEEeccccc
Q 027860 194 SVDAVVGTLVLC 205 (217)
Q Consensus 194 sfD~Vi~~~~l~ 205 (217)
..|.|+.+....
T Consensus 81 ~id~vv~~ag~~ 92 (259)
T PRK12384 81 RVDLLVYNAGIA 92 (259)
T ss_pred CCCEEEECCCcC
Confidence 679988876543
No 418
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=54.87 E-value=31 Score=30.11 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCC-CcchHHhhhCCCCeEEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG~-G~~~~~la~~~~~~v~giD~S~~~l~~a~~ 166 (217)
.++.+|+=+|+|. |.....+++..+.+|+.+|.++.-+..|++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 3789999999995 555555555667799999999877666654
No 419
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=54.85 E-value=74 Score=24.88 Aligned_cols=33 Identities=27% Similarity=0.091 Sum_probs=22.3
Q ss_pred CCCeEEEECCC-CCc-chHHhhhCCCCeEEEEcCC
Q 027860 125 KAKKVLEIGIG-TGP-NLKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~-~~~~la~~~~~~v~giD~S 157 (217)
...+|+=|||| .|. ....|+..+-.+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 67789999998 354 3444554444568888877
No 420
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=54.74 E-value=58 Score=29.92 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=42.4
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
+..+|| +.||+|.-+..++ -...++.+++.|++ ++..+.++.+.+-..+.+|+|++..-+
T Consensus 505 k~mKIL-vaCGsGiGTStmv----------------a~kIkk~Lke~GI~---veV~~~~Vsev~s~~~~aDIIVtt~~L 564 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMMM----------------KMKIKKYLDKRGIP---IIMDSCAVNDYKGKLETIDIIVCSKHL 564 (602)
T ss_pred cccEEE-EECCCCchHHHHH----------------HHHHHHHHHHcCCC---eEEEEechHhCcccCCCCCEEEEcccc
Confidence 445666 7789886555543 34566777788874 578888888887555678999987543
Q ss_pred c
Q 027860 205 C 205 (217)
Q Consensus 205 ~ 205 (217)
.
T Consensus 565 a 565 (602)
T PRK09548 565 A 565 (602)
T ss_pred h
Confidence 3
No 421
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=54.54 E-value=75 Score=25.38 Aligned_cols=76 Identities=17% Similarity=-0.009 Sum_probs=48.2
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.|++.| ++..+++ ..+.+|+.++.+++.++...+.+...+ .++.++.+|+.+.. +.
T Consensus 9 ~~k~vlVtGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 9 KGKVAVITGGGGV-LGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG---GEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5677887775443 3444332 456789999998877666555554433 35778888886542 11
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|++|.+...
T Consensus 85 ~g~id~li~~ag~ 97 (278)
T PRK08277 85 FGPCDILINGAGG 97 (278)
T ss_pred cCCCCEEEECCCC
Confidence 1468999987654
No 422
>PRK08862 short chain dehydrogenase; Provisional
Probab=54.51 E-value=68 Score=25.07 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=48.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C----CC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SD 192 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~----~~ 192 (217)
.++.+|=.|++.|. +..++. ..+.+|+.++.+++.++...+.+...+ ..+.....|+.+.. + ..
T Consensus 4 ~~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 4 KSSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSALT---DNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788888887763 333332 457789999999988877766665544 24555666654421 1 11
Q ss_pred -C-cccEEEeccc
Q 027860 193 -A-SVDAVVGTLV 203 (217)
Q Consensus 193 -~-sfD~Vi~~~~ 203 (217)
+ .+|+++.+..
T Consensus 80 ~g~~iD~li~nag 92 (227)
T PRK08862 80 FNRAPDVLVNNWT 92 (227)
T ss_pred hCCCCCEEEECCc
Confidence 3 6899998874
No 423
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=54.38 E-value=23 Score=29.68 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=32.9
Q ss_pred CCCCeEEEECCCC-CcchHHhhhCCCCeEEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG~-G~~~~~la~~~~~~v~giD~S~~~l~~a~~ 166 (217)
.++.+||=+|+|. |..+..+++..+.+++++|.+++-++.+++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4678999999854 555666666667789999999988887754
No 424
>PRK06182 short chain dehydrogenase; Validated
Probab=54.31 E-value=57 Score=26.05 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=44.6
Q ss_pred CCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----C
Q 027860 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----D 192 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-----~ 192 (217)
+++||=.|+ +|.++..+++ ..+.+|++++.+++-++.... .++.++.+|+.+.. +. .
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS---------LGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---------CCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 457776774 4445555554 457789999998765543321 13567778876542 11 1
Q ss_pred CcccEEEecccccc
Q 027860 193 ASVDAVVGTLVLCS 206 (217)
Q Consensus 193 ~sfD~Vi~~~~l~~ 206 (217)
+.+|++|.+.....
T Consensus 73 ~~id~li~~ag~~~ 86 (273)
T PRK06182 73 GRIDVLVNNAGYGS 86 (273)
T ss_pred CCCCEEEECCCcCC
Confidence 36899998876644
No 425
>PLN02650 dihydroflavonol-4-reductase
Probab=54.08 E-value=45 Score=27.87 Aligned_cols=78 Identities=12% Similarity=0.010 Sum_probs=45.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CC--CCcccEE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVDAV 198 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~--~~sfD~V 198 (217)
..++||=.| |+|..+..+++ ..+.+|++++.+..............+.. .++.++.+|+.+.. +. -..+|.|
T Consensus 4 ~~k~iLVTG-atGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~Dl~d~~~~~~~~~~~d~V 81 (351)
T PLN02650 4 QKETVCVTG-ASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGAT-TRLTLWKADLAVEGSFDDAIRGCTGV 81 (351)
T ss_pred CCCEEEEeC-CcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCC-CceEEEEecCCChhhHHHHHhCCCEE
Confidence 345666555 78877777765 34678988877755443332222111211 35788899887642 11 1247888
Q ss_pred Eecccc
Q 027860 199 VGTLVL 204 (217)
Q Consensus 199 i~~~~l 204 (217)
+.....
T Consensus 82 iH~A~~ 87 (351)
T PLN02650 82 FHVATP 87 (351)
T ss_pred EEeCCC
Confidence 876544
No 426
>PRK05872 short chain dehydrogenase; Provisional
Probab=54.05 E-value=55 Score=26.70 Aligned_cols=77 Identities=16% Similarity=0.041 Sum_probs=47.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
++++||=.|++.| ++..+++ ..+.+++.++.+++.++...+.+.. + ..+..+.+|+.+.. + .
T Consensus 8 ~gk~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 8 AGKVVVVTGAARG-IGAELARRLHARGAKLALVDLEEAELAALAAELGG-D---DRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5678888875443 4444443 4567899999998876655544321 1 23455557765431 0 0
Q ss_pred CCcccEEEecccccc
Q 027860 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~ 206 (217)
-+.+|+||.+..+..
T Consensus 83 ~g~id~vI~nAG~~~ 97 (296)
T PRK05872 83 FGGIDVVVANAGIAS 97 (296)
T ss_pred cCCCCEEEECCCcCC
Confidence 146899999887643
No 427
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.84 E-value=38 Score=29.21 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=52.6
Q ss_pred CCCCeEEEECCCCCcchHHhhh--CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC
Q 027860 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la~--~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp 189 (217)
.++..|+|+.|..|.-+..++. ....+++|.|.+..-.+..++.+...|. ..++...+|+...+
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~--~~~~~~~~df~~t~ 277 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV--SIVESVEGDFLNTA 277 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC--CccccccccccCCC
Confidence 4789999999999988888875 3456899999999999999999888886 35666688877753
No 428
>PRK09242 tropinone reductase; Provisional
Probab=53.80 E-value=54 Score=25.84 Aligned_cols=78 Identities=14% Similarity=-0.054 Sum_probs=49.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
.++++|=.|++.| ++..+++ ..+.+++.++.+.+.++...+.+..... ..++.++.+|+.+.. + .
T Consensus 8 ~~k~~lItGa~~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKG-IGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP-EREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678888887443 3333332 4567899999988777666655543311 135778888886531 0 1
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|+|+.+...
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 1468999887765
No 429
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=53.63 E-value=41 Score=22.58 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=8.0
Q ss_pred ECCCCCcchHHh
Q 027860 132 IGIGTGPNLKYY 143 (217)
Q Consensus 132 iGcG~G~~~~~l 143 (217)
+-||+|.-+..+
T Consensus 7 vvCgsG~~TS~m 18 (94)
T PRK10310 7 VACGGAVATSTM 18 (94)
T ss_pred EECCCchhHHHH
Confidence 568888655554
No 430
>PRK08339 short chain dehydrogenase; Provisional
Probab=53.56 E-value=81 Score=25.11 Aligned_cols=77 Identities=13% Similarity=-0.032 Sum_probs=48.9
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C----CC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SD 192 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~----~~ 192 (217)
.++.+|=.|++.| ++..+++ ..+.+|+.++.+++-++...+.+....- .++.++.+|+.+.. + .-
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSESN--VDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHHHhh
Confidence 5677887776544 3443333 4577899999998877666655433211 35778888886542 1 11
Q ss_pred CcccEEEecccc
Q 027860 193 ASVDAVVGTLVL 204 (217)
Q Consensus 193 ~sfD~Vi~~~~l 204 (217)
+..|+++.+...
T Consensus 84 g~iD~lv~nag~ 95 (263)
T PRK08339 84 GEPDIFFFSTGG 95 (263)
T ss_pred CCCcEEEECCCC
Confidence 468998887654
No 431
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.90 E-value=65 Score=27.00 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=55.6
Q ss_pred CCCeEEEECCCC--CcchHH-hhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--------C--C
Q 027860 125 KAKKVLEIGIGT--GPNLKY-YAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V--S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~--G~~~~~-la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------~--~ 191 (217)
.+..++=-|+-. |..+.. |+ ..+.+|+-...+.+..+.+.+.+.+ +....++.+.+.|+..+. + .
T Consensus 34 ~~~~~vVTGansGIG~eta~~La-~~Ga~Vv~~~R~~~~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETARELA-LRGAHVVLACRNEERGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 455666666543 333333 33 4568999999998777778777766 332367889999997753 1 2
Q ss_pred CCcccEEEeccccccccC
Q 027860 192 DASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~~~d 209 (217)
....|+.|.+.++...+.
T Consensus 112 ~~~ldvLInNAGV~~~~~ 129 (314)
T KOG1208|consen 112 EGPLDVLINNAGVMAPPF 129 (314)
T ss_pred CCCccEEEeCcccccCCc
Confidence 467999999887765544
No 432
>PRK07109 short chain dehydrogenase; Provisional
Probab=52.81 E-value=82 Score=26.32 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=50.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
.+++||=.|++ |.++..+++ ..+.+|+.++.+++.++...+.+...+ .++.++.+|+.+.. + .
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG---GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45677777754 334444432 456789999999887777666665554 35778888876532 0 0
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+.+|++|.+....
T Consensus 83 ~g~iD~lInnAg~~ 96 (334)
T PRK07109 83 LGPIDTWVNNAMVT 96 (334)
T ss_pred CCCCCEEEECCCcC
Confidence 14689999876543
No 433
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=52.18 E-value=49 Score=26.69 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhc--CCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHH---HHcCCCCCCeEEEeccc
Q 027860 111 VAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA---VAAGLPLTNFKFLQAVG 185 (217)
Q Consensus 111 ~~~~~~~~~~~l~--~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~---~~~~~~~~~i~~~~~d~ 185 (217)
+..+.+.+++.+. ...-.|+|--+|-=.+++...+.-+.-++.+|+|...++.|++.. .+.++ +++.++.-.+
T Consensus 118 ~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~--k~i~~V~NKv 195 (255)
T COG3640 118 MNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGI--KRIFVVLNKV 195 (255)
T ss_pred HHHHHHHHHHHHhcccCcEEEEecccchhhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCC--ceEEEEEeec
Confidence 4456666666665 245678999999988888887666667899999999999988653 55554 4666665444
Q ss_pred c
Q 027860 186 E 186 (217)
Q Consensus 186 ~ 186 (217)
.
T Consensus 196 ~ 196 (255)
T COG3640 196 D 196 (255)
T ss_pred c
Confidence 3
No 434
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=51.41 E-value=59 Score=26.68 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=31.3
Q ss_pred CCCCeEEEECCC-CCcchHHhhhCCCCe-EEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~giD~S~~~l~~a~~ 166 (217)
.++.+||-+|+| .|..+..+++..+.+ +++++.+++..+.+++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 367889888865 355666667666666 8999999888777644
No 435
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=51.39 E-value=15 Score=30.79 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=30.4
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHH
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ 165 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~ 165 (217)
....||=-|||.|+++..|+. .+...-|=+.|.-|+-...
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~-~G~~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLAC-LGFKCQGNEFSYFMLICSS 189 (369)
T ss_pred cCceEEecCCCchhHHHHHHH-hcccccccHHHHHHHHHHH
Confidence 356899999999999999984 4555667788887765444
No 436
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=51.15 E-value=1e+02 Score=23.68 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=20.3
Q ss_pred CCCeEEEECCCC-C-cchHHhhhCCCCeEEEEcCC
Q 027860 125 KAKKVLEIGIGT-G-PNLKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~VLDiGcG~-G-~~~~~la~~~~~~v~giD~S 157 (217)
...+||=+|||. | .....|+..+-.+++.+|..
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 667899999874 3 22333443444567777755
No 437
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=50.68 E-value=31 Score=29.65 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=45.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHH--HHHHHHHcCCCCCCeEEEeccccccC-----CCCC-
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKY--AQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDA- 193 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~--a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~- 193 (217)
.+.+||=+| |+|..+..+++ ..+.+|++++.+..-+.. ......... ++++++.+|+.+.. +...
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~---~~v~~v~~Dl~d~~~l~~~~~~~~ 134 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKEL---PGAEVVFGDVTDADSLRKVLFSEG 134 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhc---CCceEEEeeCCCHHHHHHHHHHhC
Confidence 566888777 78887777664 356789999887643221 011111111 36788999887643 2211
Q ss_pred -cccEEEeccc
Q 027860 194 -SVDAVVGTLV 203 (217)
Q Consensus 194 -sfD~Vi~~~~ 203 (217)
.+|+|+.+..
T Consensus 135 ~~~D~Vi~~aa 145 (390)
T PLN02657 135 DPVDVVVSCLA 145 (390)
T ss_pred CCCcEEEECCc
Confidence 5899987544
No 438
>PRK07062 short chain dehydrogenase; Provisional
Probab=50.02 E-value=92 Score=24.59 Aligned_cols=79 Identities=10% Similarity=-0.077 Sum_probs=50.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-C---------C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V---------S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~---------~ 191 (217)
.++.+|=.|++.| ++..+++ ..+.+|+.++.+++-++.+.+.+...... .++.++..|+.+.. + .
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPG-ARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCC-ceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 5678888886544 4444443 45778999999988777666555443211 25667777776532 0 1
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+.+|++|.+....
T Consensus 85 ~g~id~li~~Ag~~ 98 (265)
T PRK07062 85 FGGVDMLVNNAGQG 98 (265)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999887654
No 439
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=49.91 E-value=83 Score=25.83 Aligned_cols=78 Identities=17% Similarity=0.078 Sum_probs=39.0
Q ss_pred CCCeEEEECCCCCcchHHhh----hCCCCeEEEEcCCHHHHHHHHHH---HHHcCCCCCCeEEEeccccccC-CC--CCc
Q 027860 125 KAKKVLEIGIGTGPNLKYYA----ADTDVQVLGVDPNRKMEKYAQTA---AVAAGLPLTNFKFLQAVGEAIP-VS--DAS 194 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la----~~~~~~v~giD~S~~~l~~a~~~---~~~~~~~~~~i~~~~~d~~~lp-~~--~~s 194 (217)
.++++|=+|+| |. ++.++ +.+..+++.++.+.+..+.+++. +...+ ..+.+...|..+.. +. -..
T Consensus 125 ~~k~vlI~GAG-Ga-grAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~---~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 125 KGKKLTVIGAG-GA-ATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV---PECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred CCCEEEEECCc-HH-HHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC---CCceeEEechhhhhHHHhhhcc
Confidence 56788989886 42 23322 23334599999886322333332 22221 12333344443221 11 134
Q ss_pred ccEEEeccccccc
Q 027860 195 VDAVVGTLVLCSV 207 (217)
Q Consensus 195 fD~Vi~~~~l~~~ 207 (217)
+|+||.+-.+...
T Consensus 200 ~DilINaTp~Gm~ 212 (289)
T PRK12548 200 SDILVNATLVGMK 212 (289)
T ss_pred CCEEEEeCCCCCC
Confidence 6999887765543
No 440
>PRK06197 short chain dehydrogenase; Provisional
Probab=49.88 E-value=1.1e+02 Score=24.99 Aligned_cols=79 Identities=13% Similarity=0.012 Sum_probs=49.4
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
.+++||=.| |+|.++..+++ ..+.+++.++.+....+.+.+.+..... ..++.++.+|+.+.. + .
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATP-GADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 567788666 45555555553 4567899999887766655544433211 135778888886643 1 0
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+.+|+||.+..+.
T Consensus 93 ~~~iD~li~nAg~~ 106 (306)
T PRK06197 93 YPRIDLLINNAGVM 106 (306)
T ss_pred CCCCCEEEECCccc
Confidence 13689999887654
No 441
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=49.29 E-value=35 Score=28.35 Aligned_cols=81 Identities=15% Similarity=0.074 Sum_probs=45.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHH--HHHHHHHHHcCCCCCCeEEEeccccccC-----CCCCc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKME--KYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDAS 194 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l--~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~s 194 (217)
++++||=.| |+|..+..+++ ..+.+|++++..+... ................+.++.+|+.+.. +....
T Consensus 5 ~~~~vlVTG-atGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 5 PRKVALITG-ITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCEEEEEC-CCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 456777777 56666666664 4577899988754321 1111111000000135788889887642 22224
Q ss_pred ccEEEecccccc
Q 027860 195 VDAVVGTLVLCS 206 (217)
Q Consensus 195 fD~Vi~~~~l~~ 206 (217)
.|+|+......+
T Consensus 84 ~d~Vih~A~~~~ 95 (340)
T PLN02653 84 PDEVYNLAAQSH 95 (340)
T ss_pred CCEEEECCcccc
Confidence 798888776543
No 442
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.08 E-value=42 Score=29.89 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=40.8
Q ss_pred CCCeEEEECCCC-CcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEeccc
Q 027860 125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~ 203 (217)
++++|+=+|.|. |.....+....+..|++.|..+..++. +.+.| +.+..++-....+ ..+|+||.+-+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~----l~~~g-----~~~~~~~~~~~~l--~~~D~VV~SpG 79 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP----HAERG-----VATVSTSDAVQQI--ADYALVVTSPG 79 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH----HHhCC-----CEEEcCcchHhHh--hcCCEEEECCC
Confidence 567899999884 444444445677899999987664433 22233 3343332111112 24788888776
Q ss_pred cc
Q 027860 204 LC 205 (217)
Q Consensus 204 l~ 205 (217)
+.
T Consensus 80 i~ 81 (488)
T PRK03369 80 FR 81 (488)
T ss_pred CC
Confidence 54
No 443
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=49.06 E-value=74 Score=24.77 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=45.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.+++||=.|++.| ++..+++ ..+.++++++.++ ...+.+.....+ .++.++..|+.+.. +.
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 4 EGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALG---RRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678888887544 4444443 4567899999865 233333333333 35778888886542 10
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
.+..|+||.+....
T Consensus 78 ~~~~d~li~~ag~~ 91 (248)
T TIGR01832 78 FGHIDILVNNAGII 91 (248)
T ss_pred cCCCCEEEECCCCC
Confidence 14589999877654
No 444
>PRK07060 short chain dehydrogenase; Provisional
Probab=49.03 E-value=69 Score=24.83 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=42.6
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-CCcc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-DASV 195 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-~~sf 195 (217)
+++++|=.|++ |..+..+++ ..+.+++.++.+++.++...+. . ...++.+|+.+.. +. .+.+
T Consensus 8 ~~~~~lItGa~-g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~-----~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 8 SGKSVLVTGAS-SGIGRACAVALAQRGARVVAAARNAAALDRLAGE---T-----GCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h-----CCeEEEecCCCHHHHHHHHHHhCCC
Confidence 56678866653 333333332 4567899999987655433322 1 2356677775532 11 1458
Q ss_pred cEEEecccccc
Q 027860 196 DAVVGTLVLCS 206 (217)
Q Consensus 196 D~Vi~~~~l~~ 206 (217)
|+||.+.....
T Consensus 79 d~vi~~ag~~~ 89 (245)
T PRK07060 79 DGLVNCAGIAS 89 (245)
T ss_pred CEEEECCCCCC
Confidence 99998776544
No 445
>PRK09186 flagellin modification protein A; Provisional
Probab=48.84 E-value=82 Score=24.64 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=46.1
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.+++||=.|++ |.++..+++ ..+.++++++.+++.++...+.+...... ..+.++.+|+.+.. +.
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKS-KKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCC-CceeEEEecCCCHHHHHHHHHHHHHH
Confidence 45677777754 334444443 45778999999887776665554322111 34567788886532 11
Q ss_pred CCcccEEEeccc
Q 027860 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~Vi~~~~ 203 (217)
-+..|+||.+..
T Consensus 81 ~~~id~vi~~A~ 92 (256)
T PRK09186 81 YGKIDGAVNCAY 92 (256)
T ss_pred cCCccEEEECCc
Confidence 134799988763
No 446
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.78 E-value=1.1e+02 Score=23.57 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=48.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEE-cCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGV-DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS---- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~gi-D~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 191 (217)
.++++|=+| |+|..+..+++ ..+.+++.+ +.+++.++.....+...+ .++.++.+|+.+.. +.
T Consensus 4 ~~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 4 MGKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG---GDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 345777777 45555555543 356788888 888776665555544433 35788888886542 11
Q ss_pred -CCcccEEEeccccc
Q 027860 192 -DASVDAVVGTLVLC 205 (217)
Q Consensus 192 -~~sfD~Vi~~~~l~ 205 (217)
-+.+|+||.+....
T Consensus 80 ~~~~id~vi~~ag~~ 94 (247)
T PRK05565 80 KFGKIDILVNNAGIS 94 (247)
T ss_pred HhCCCCEEEECCCcC
Confidence 12589999876543
No 447
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.58 E-value=26 Score=29.24 Aligned_cols=71 Identities=28% Similarity=0.208 Sum_probs=46.2
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CCCCcccEEE
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVDAVV 199 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~sfD~Vi 199 (217)
+||=.| |.|+.+..... ..+.+|+.+|--..--..+-.+. .+.|.++|+.+-. |...++|.|+
T Consensus 2 ~iLVtG-GAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~--------~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 2 KVLVTG-GAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL--------QFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred eEEEec-CcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc--------cCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 455454 88887766543 46778999987554433333321 1479999987742 7778999999
Q ss_pred eccccccc
Q 027860 200 GTLVLCSV 207 (217)
Q Consensus 200 ~~~~l~~~ 207 (217)
-..++-.+
T Consensus 73 HFAa~~~V 80 (329)
T COG1087 73 HFAASISV 80 (329)
T ss_pred ECcccccc
Confidence 76655444
No 448
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=48.54 E-value=1.5e+02 Score=24.07 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=54.3
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCC-CCCCeEEEeccccc-c-------CCCCCcc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEA-I-------PVSDASV 195 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~-~~~~i~~~~~d~~~-l-------p~~~~sf 195 (217)
....|+.+|||--.-...+....+..++=+|.- ++++.-++.+.+.+. +..+.+++..|+.. + .|..+.-
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQP-AVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCCCCCeEEECCCh-HHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 345799999998876666643334677777774 466666666665442 22577888888851 1 1222333
Q ss_pred cEEEeccccccccCh
Q 027860 196 DAVVGTLVLCSVKDV 210 (217)
Q Consensus 196 D~Vi~~~~l~~~~d~ 210 (217)
-++++..++.+++..
T Consensus 160 tl~i~EGvl~YL~~~ 174 (260)
T TIGR00027 160 TAWLWEGLLMYLTEE 174 (260)
T ss_pred eeeeecchhhcCCHH
Confidence 477778888888753
No 449
>PRK06125 short chain dehydrogenase; Provisional
Probab=48.48 E-value=79 Score=24.91 Aligned_cols=78 Identities=14% Similarity=0.008 Sum_probs=49.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-CCCcc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-SDASV 195 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~~sf 195 (217)
.++++|=.|++.| ++..+++ ..+.+|++++.+++.++...+.+..... .++.++..|+.+.. + .-+..
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG--VDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHhCCC
Confidence 5678888886443 4444432 4567999999998877766655543321 35677888875431 1 12568
Q ss_pred cEEEeccccc
Q 027860 196 DAVVGTLVLC 205 (217)
Q Consensus 196 D~Vi~~~~l~ 205 (217)
|++|.+....
T Consensus 83 d~lv~~ag~~ 92 (259)
T PRK06125 83 DILVNNAGAI 92 (259)
T ss_pred CEEEECCCCC
Confidence 9999877653
No 450
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=47.78 E-value=13 Score=26.06 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=38.3
Q ss_pred CCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-----C-CCCCcccEEEeccc
Q 027860 135 GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASVDAVVGTLV 203 (217)
Q Consensus 135 G~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~sfD~Vi~~~~ 203 (217)
|.|.+...+++..+.+++++|.++.-++.+++. |. -.++..+-.++ . .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA----DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE----SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc----cccccccccccccccccccccccceEEEEecC
Confidence 346667777776669999999999988888764 21 12333322211 1 23347999987654
No 451
>PRK08589 short chain dehydrogenase; Validated
Probab=47.62 E-value=1e+02 Score=24.57 Aligned_cols=76 Identities=17% Similarity=0.048 Sum_probs=46.2
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
+++++|=.|++.| ++..+++ ..+.+|+.++.+ ..++...+.+.+.+ .++.++..|+.+.. + .
T Consensus 5 ~~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG---GKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 5667887776544 4444443 457799999998 44444444444333 35677888876531 0 1
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+..|++|.+..+.
T Consensus 80 ~g~id~li~~Ag~~ 93 (272)
T PRK08589 80 FGRVDVLFNNAGVD 93 (272)
T ss_pred cCCcCEEEECCCCC
Confidence 14589999887654
No 452
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=47.58 E-value=17 Score=32.21 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=37.4
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHH
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAA 168 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~ 168 (217)
.+..+|=||-|.|.+..++.. .+...++++++.+.|++.|.+.+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f 339 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYF 339 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhh
Confidence 567889999999998888764 45578999999999999999875
No 453
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=47.42 E-value=1.2e+02 Score=23.75 Aligned_cols=76 Identities=11% Similarity=0.040 Sum_probs=48.4
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----C
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~ 191 (217)
.++.+|=.|++ |.++..+++ ..+.+++.++.++..++...+.+...+ .++.++..|+.+.. + .
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG---IKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 56778888854 444544443 456799999999877666655554433 34667777775532 1 1
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+.+|+|+.+...
T Consensus 84 ~~~id~vi~~ag~ 96 (254)
T PRK08085 84 IGPIDVLINNAGI 96 (254)
T ss_pred cCCCCEEEECCCc
Confidence 1468999987764
No 454
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=47.35 E-value=24 Score=30.28 Aligned_cols=42 Identities=24% Similarity=0.168 Sum_probs=29.1
Q ss_pred CCCeEEEECCC-CCcchHHhhhCCCCeEEEEcCCHHHHHHHHH
Q 027860 125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~~~~~la~~~~~~v~giD~S~~~l~~a~~ 166 (217)
++.+|+=+|+| .|......++..+.+|+.+|.++.-++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 45678888887 4455555555567789999999876655544
No 455
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.95 E-value=90 Score=27.17 Aligned_cols=72 Identities=24% Similarity=0.121 Sum_probs=42.4
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCH-HHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEe
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNR-KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~-~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~ 200 (217)
.+++|+=+|+|. .+..++. ..+.+|+++|.+. ..+....+.+...+ +.+..++..+.. .+.+|+|+.
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~--~~~~d~vv~ 74 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG-----IELVLGEYPEEF--LEGVDLVVV 74 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-----CEEEeCCcchhH--hhcCCEEEE
Confidence 467888888775 3333332 5678999999985 33333223333333 456666654421 245898888
Q ss_pred ccccc
Q 027860 201 TLVLC 205 (217)
Q Consensus 201 ~~~l~ 205 (217)
.-...
T Consensus 75 ~~g~~ 79 (450)
T PRK14106 75 SPGVP 79 (450)
T ss_pred CCCCC
Confidence 76553
No 456
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.91 E-value=77 Score=27.31 Aligned_cols=82 Identities=13% Similarity=0.006 Sum_probs=48.5
Q ss_pred CCCCCcchHHhhh----CCCCeEEEEcCCH---HHHHHHHHHHHHcC----CCCCCeEEEeccccccC--CC-------C
Q 027860 133 GIGTGPNLKYYAA----DTDVQVLGVDPNR---KMEKYAQTAAVAAG----LPLTNFKFLQAVGEAIP--VS-------D 192 (217)
Q Consensus 133 GcG~G~~~~~la~----~~~~~v~giD~S~---~~l~~a~~~~~~~~----~~~~~i~~~~~d~~~lp--~~-------~ 192 (217)
-.+||.++.++.. ....+|++.=-.. .+..+.++.+...+ .-..++..+.+|..... ++ .
T Consensus 6 TGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~~~~La 85 (382)
T COG3320 6 TGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQELA 85 (382)
T ss_pred ecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHHHHHHh
Confidence 3488988877654 3445666654432 34444444443111 11268999999998543 32 2
Q ss_pred CcccEEEeccccccccChhhhc
Q 027860 193 ASVDAVVGTLVLCSVKDVDMTL 214 (217)
Q Consensus 193 ~sfD~Vi~~~~l~~~~d~~~~L 214 (217)
+.+|+|+-+.++.|.-.|-..|
T Consensus 86 ~~vD~I~H~gA~Vn~v~pYs~L 107 (382)
T COG3320 86 ENVDLIIHNAALVNHVFPYSEL 107 (382)
T ss_pred hhcceEEecchhhcccCcHHHh
Confidence 5799999988776654444433
No 457
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=46.84 E-value=85 Score=25.88 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=47.1
Q ss_pred CCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~ 202 (217)
++....|+|+-.|.++-.|. ..+..|++||--+ |.... -.. +.++....|.....-.....|-.+|-.
T Consensus 211 ~~M~avDLGAcPGGWTyqLV-kr~m~V~aVDng~-ma~sL----~dt----g~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLV-KRNMRVYAVDNGP-MAQSL----MDT----GQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred CCceeeecccCCCccchhhh-hcceEEEEeccch-hhhhh----hcc----cceeeeeccCcccccCCCCCceEEeeh
Confidence 78899999999999998887 4567899999764 32221 112 456777777766632345677776644
No 458
>PLN02427 UDP-apiose/xylose synthase
Probab=46.77 E-value=53 Score=27.91 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=45.8
Q ss_pred CCCeEEEECCCCCcchHHhhh---CC-CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CC--CCcccE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVDA 197 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~-~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~--~~sfD~ 197 (217)
+.++||=.| |+|..+..+++ .. +.+|+++|.+...+....... ...+. .+++++.+|+.+.. +. -..+|+
T Consensus 13 ~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~-~~~~~-~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 13 KPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPD-TVPWS-GRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred cCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccc-cccCC-CCeEEEEcCCCChHHHHHHhhcCCE
Confidence 456788555 88888887775 22 468999997754332211110 00121 36889999987643 11 124798
Q ss_pred EEecccc
Q 027860 198 VVGTLVL 204 (217)
Q Consensus 198 Vi~~~~l 204 (217)
||-....
T Consensus 90 ViHlAa~ 96 (386)
T PLN02427 90 TINLAAI 96 (386)
T ss_pred EEEcccc
Confidence 8876654
No 459
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=46.27 E-value=87 Score=25.27 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=46.8
Q ss_pred CCeEEEECCCCCcchHHhhhCC-------C---CeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC------
Q 027860 126 AKKVLEIGIGTGPNLKYYAADT-------D---VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------ 189 (217)
Q Consensus 126 ~~~VLDiGcG~G~~~~~la~~~-------~---~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp------ 189 (217)
-.+++|+.+..|.++..|.+.. + ..+++||+-+= . +.+.+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------a--PI~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------A--PIEGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------C--ccCceEEeecccCCHhHHHHHH
Confidence 4589999999999999887621 1 13999999631 1 1256778899987642
Q ss_pred --CCCCcccEEEeccc
Q 027860 190 --VSDASVDAVVGTLV 203 (217)
Q Consensus 190 --~~~~sfD~Vi~~~~ 203 (217)
|..+..|+|+|-.+
T Consensus 109 ~hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGA 124 (294)
T ss_pred HHhCCCCccEEEeCCC
Confidence 55678999999543
No 460
>PRK05875 short chain dehydrogenase; Provisional
Probab=46.24 E-value=93 Score=24.74 Aligned_cols=77 Identities=19% Similarity=0.036 Sum_probs=46.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
+++++|=.|++ |..+..+++ ..+.+|++++.++..++...+.+...+.. .++.++.+|+.+.. +.
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGA-GAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56788888853 334444443 45678999999876655544443322211 35778888886532 11
Q ss_pred CCcccEEEeccc
Q 027860 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~Vi~~~~ 203 (217)
-+..|+||.+..
T Consensus 84 ~~~~d~li~~ag 95 (276)
T PRK05875 84 HGRLHGVVHCAG 95 (276)
T ss_pred cCCCCEEEECCC
Confidence 135799988765
No 461
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=46.17 E-value=71 Score=27.02 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCeEEEECCC-CCc-chHHhhhCCCCeEEEEcCCH
Q 027860 125 KAKKVLEIGIG-TGP-NLKYYAADTDVQVLGVDPNR 158 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~-~~~~la~~~~~~v~giD~S~ 158 (217)
...+||=|||| .|. .+..|+..+-.+++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 67789999998 343 33445544445888899874
No 462
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.06 E-value=65 Score=26.72 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCCCeEEEECCCC-CcchHHhhhCCCCe-EEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~giD~S~~~l~~a~~ 166 (217)
.++.+||=.|+|. |..+..+++..+.+ +++++.+++..+.+++
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 4677777777654 56666677766766 8999998887776644
No 463
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=45.98 E-value=1.2e+02 Score=23.65 Aligned_cols=73 Identities=16% Similarity=0.000 Sum_probs=44.6
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----CCCc
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDAS 194 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~~~s 194 (217)
++|=.|+ +|..+..+++ ..+.+++.++.++..++...+.+...+ .++.++.+|+.+.. + ..+.
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG---GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4555664 4555555443 456789999988776665555554444 35778888876532 0 0135
Q ss_pred ccEEEecccc
Q 027860 195 VDAVVGTLVL 204 (217)
Q Consensus 195 fD~Vi~~~~l 204 (217)
.|.||.+...
T Consensus 78 id~vi~~ag~ 87 (254)
T TIGR02415 78 FDVMVNNAGV 87 (254)
T ss_pred CCEEEECCCc
Confidence 7888887654
No 464
>KOG3790 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.93 E-value=3 Score=36.19 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcchHHhhhCCCCeEEEEcCCHHHHHHHHHH
Q 027860 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 114 ~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~ 167 (217)
+..++...+...+....|+|||.| ++..+....+..-+|+|.+...+.--.++
T Consensus 200 ylh~lvsSv~~~p~~f~d~gcgng-llvhllna~gllgyg~dhrkr~iwgy~kr 252 (529)
T KOG3790|consen 200 YLHELVSSVPSKPNKFVDIGCGNG-LLVHLLNAIGLLGYGIDHRKRNIWGYTKR 252 (529)
T ss_pred HHHHHHhcccccccchhccccCch-hHHHHHHHHHHHhhhhHhhhcchhccccc
Confidence 344444444335667899999999 45555445555667888877666554443
No 465
>PRK06953 short chain dehydrogenase; Provisional
Probab=45.64 E-value=1.1e+02 Score=23.38 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=40.0
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--------CCCCccc
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDASVD 196 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~~sfD 196 (217)
++|=.|+ +|.++..+++ ..+.+++.++.++..++..+. . .+.++.+|+.+.. +....+|
T Consensus 3 ~vlvtG~-sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~----~-----~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 3 TVLIVGA-SRGIGREFVRQYRADGWRVIATARDAAALAALQA----L-----GAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred eEEEEcC-CCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh----c-----cceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 4565554 4545444443 457789999998765543322 1 2356777765432 2234689
Q ss_pred EEEeccccc
Q 027860 197 AVVGTLVLC 205 (217)
Q Consensus 197 ~Vi~~~~l~ 205 (217)
+|+.+....
T Consensus 73 ~vi~~ag~~ 81 (222)
T PRK06953 73 AAVYVAGVY 81 (222)
T ss_pred EEEECCCcc
Confidence 999876554
No 466
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=45.36 E-value=36 Score=33.41 Aligned_cols=71 Identities=23% Similarity=0.209 Sum_probs=40.4
Q ss_pred CCCeEEEECCCC-Ccc-hHHhhhCCCC-------------eEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEecccc---
Q 027860 125 KAKKVLEIGIGT-GPN-LKYYAADTDV-------------QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--- 186 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~~-~~~la~~~~~-------------~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~--- 186 (217)
..++||=||||. |.. ...|++.++. .++..|++.+..+.+.+.. ++++.+..|+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-------~~~~~v~lDv~D~e 640 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-------ENAEAVQLDVSDSE 640 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-------CCCceEEeecCCHH
Confidence 356899999983 543 3344444443 3888999976655444431 24444555443
Q ss_pred ccCCCCCcccEEEecc
Q 027860 187 AIPVSDASVDAVVGTL 202 (217)
Q Consensus 187 ~lp~~~~sfD~Vi~~~ 202 (217)
.+.-.-...|+|++..
T Consensus 641 ~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 641 SLLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHHhhcCCCEEEECC
Confidence 3321003489998865
No 467
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.83 E-value=1.2e+02 Score=23.82 Aligned_cols=76 Identities=7% Similarity=-0.058 Sum_probs=43.8
Q ss_pred CCCeEEEECCCC-CcchHHhhh---CCCCeEEEEcCC------------HHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027860 125 KAKKVLEIGIGT-GPNLKYYAA---DTDVQVLGVDPN------------RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~~~~~la~---~~~~~v~giD~S------------~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~l 188 (217)
.+++||=.|++. |.++..+++ ..+.+++.++.+ ++... ..+.....+ .++.++..|+.+.
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~D~~~~ 79 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG---VRCEHMEIDLSQP 79 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC---CeEEEEECCCCCH
Confidence 456788888753 344444443 346788888776 22222 222223333 3578888888653
Q ss_pred C--------C--CCCcccEEEecccc
Q 027860 189 P--------V--SDASVDAVVGTLVL 204 (217)
Q Consensus 189 p--------~--~~~sfD~Vi~~~~l 204 (217)
. + .-+.+|+|+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 80 YAPNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 2 0 11468999887754
No 468
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=44.70 E-value=1.7e+02 Score=23.88 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=56.2
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--------CCC-
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSD- 192 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~- 192 (217)
.++++|=-|+-.| ++..+++ ..+.+++.+-.+++-++...+.++...- -.++++..|+.+.. +..
T Consensus 5 ~~~~~lITGASsG-IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~--v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 5 KGKTALITGASSG-IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTG--VEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhC--ceEEEEECcCCChhHHHHHHHHHHhc
Confidence 4556776676544 3344443 5678999999999988887777755431 35788889886653 112
Q ss_pred -CcccEEEeccccccccC
Q 027860 193 -ASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 193 -~sfD~Vi~~~~l~~~~d 209 (217)
..+|++|.+.++-....
T Consensus 82 ~~~IdvLVNNAG~g~~g~ 99 (265)
T COG0300 82 GGPIDVLVNNAGFGTFGP 99 (265)
T ss_pred CCcccEEEECCCcCCccc
Confidence 37999999988877653
No 469
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.28 E-value=48 Score=27.98 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=29.7
Q ss_pred CCCCeEEEECCCCCcchHHhh-h-CCCCeEEEEcCCHHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGTGPNLKYYA-A-DTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 124 ~~~~~VLDiGcG~G~~~~~la-~-~~~~~v~giD~S~~~l~~a~~~ 167 (217)
.++.++-=+|+|.=.++.... + ....+++|||++++-.+.|++.
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 366677777766433333222 2 4556899999999999988864
No 470
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=44.23 E-value=77 Score=26.84 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=23.3
Q ss_pred CCCeEEEECCC-CCc-chHHhhhCCCCeEEEEcCC
Q 027860 125 KAKKVLEIGIG-TGP-NLKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~-~~~~la~~~~~~v~giD~S 157 (217)
...+||=|||| .|. .+..|+..+-.+++.+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 67789999998 453 3444554445589999986
No 471
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=44.03 E-value=1.2e+02 Score=23.95 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=46.5
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.+++||=.|++.| ++..+++ ..+.+++.++.+ .-.+.+.+.....+ .++.++.+|+.+.. +.
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG---RKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 6778888886554 3444432 457788888887 33444444444433 35778888887642 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+.+|++|.+....
T Consensus 89 ~g~id~li~~ag~~ 102 (258)
T PRK06935 89 FGKIDILVNNAGTI 102 (258)
T ss_pred cCCCCEEEECCCCC
Confidence 13689999877543
No 472
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=43.83 E-value=42 Score=27.51 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=33.3
Q ss_pred CCCCeEEEECCC-CCcchHHhhhCCCCeEEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG-~G~~~~~la~~~~~~v~giD~S~~~l~~a~~ 166 (217)
.++.+||-+|+| .|..+..+++..+.++++++.+++.++.+++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK 204 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 467788888886 6666666777777899999999988777743
No 473
>PRK08628 short chain dehydrogenase; Provisional
Probab=43.74 E-value=1.3e+02 Score=23.65 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=46.3
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
+++.+|=.|+ +|.++..+++ ..+.+++.++.++..++.. +.+...+ .++.++..|+.+.. +.
T Consensus 6 ~~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 6 KDKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDDEFA-EELRALQ---PRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhHHHH-HHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 5667777775 4445555553 4567888888887766333 3333333 35788888886532 11
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+..|.||.+...
T Consensus 81 ~~~id~vi~~ag~ 93 (258)
T PRK08628 81 FGRIDGLVNNAGV 93 (258)
T ss_pred cCCCCEEEECCcc
Confidence 1468999887764
No 474
>PLN02240 UDP-glucose 4-epimerase
Probab=43.70 E-value=92 Score=25.85 Aligned_cols=76 Identities=18% Similarity=0.131 Sum_probs=43.4
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHH----HHHHHHHHHHHcCCCCCCeEEEeccccccC-----CCC
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRK----MEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSD 192 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~----~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~ 192 (217)
.+++||=.| |+|.++..+++ ..+.+|+++|.... ............+ .++.++.+|+.+.. +..
T Consensus 4 ~~~~vlItG-atG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~l~~~~~~ 79 (352)
T PLN02240 4 MGRTILVTG-GAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLG---DNLVFHKVDLRDKEALEKVFAS 79 (352)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccC---ccceEEecCcCCHHHHHHHHHh
Confidence 456788676 77777766654 34678999985422 1221111111111 35778888886543 222
Q ss_pred CcccEEEecccc
Q 027860 193 ASVDAVVGTLVL 204 (217)
Q Consensus 193 ~sfD~Vi~~~~l 204 (217)
..+|.|+.....
T Consensus 80 ~~~d~vih~a~~ 91 (352)
T PLN02240 80 TRFDAVIHFAGL 91 (352)
T ss_pred CCCCEEEEcccc
Confidence 357888876543
No 475
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=43.63 E-value=63 Score=26.65 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCCCeEEEECCC-CCcchHHhhhCCCC-eEEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG-~G~~~~~la~~~~~-~v~giD~S~~~l~~a~~ 166 (217)
.++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 367788887765 36666667766664 78899888877766654
No 476
>PRK06198 short chain dehydrogenase; Provisional
Probab=43.58 E-value=1.3e+02 Score=23.61 Aligned_cols=77 Identities=21% Similarity=0.110 Sum_probs=46.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCe-EEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS---- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~-v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 191 (217)
.+++||=.|+ +|..+..+++ ..+.+ |+.++.++.-+......+...+ .++.++..|+.+.. +.
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG---AKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5677887775 4445555443 34556 9999988765554444443333 35677788876532 10
Q ss_pred -CCcccEEEeccccc
Q 027860 192 -DASVDAVVGTLVLC 205 (217)
Q Consensus 192 -~~sfD~Vi~~~~l~ 205 (217)
-+.+|.|+.+....
T Consensus 81 ~~g~id~li~~ag~~ 95 (260)
T PRK06198 81 AFGRLDALVNAAGLT 95 (260)
T ss_pred HhCCCCEEEECCCcC
Confidence 13579998877543
No 477
>PRK07806 short chain dehydrogenase; Provisional
Probab=43.55 E-value=1e+02 Score=23.98 Aligned_cols=76 Identities=16% Similarity=-0.028 Sum_probs=43.8
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCH-HHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNR-KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS---- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~-~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 191 (217)
.++++|=.|+ +|.++..+++ ..+.+|++++.+. ..++.....+...+ .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG---GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678888885 3445555443 4567888887754 23343333333333 35678888876542 11
Q ss_pred -CCcccEEEecccc
Q 027860 192 -DASVDAVVGTLVL 204 (217)
Q Consensus 192 -~~sfD~Vi~~~~l 204 (217)
-+.+|+||.+...
T Consensus 81 ~~~~~d~vi~~ag~ 94 (248)
T PRK07806 81 EFGGLDALVLNASG 94 (248)
T ss_pred hCCCCcEEEECCCC
Confidence 0357888876643
No 478
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=43.32 E-value=1e+02 Score=25.14 Aligned_cols=84 Identities=11% Similarity=0.010 Sum_probs=58.5
Q ss_pred CCCeEEEECCCCC--cchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC----------CC-
Q 027860 125 KAKKVLEIGIGTG--PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G--~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp----------~~- 191 (217)
.++.+|=-|.+.| ..+.......+++|+..+.+++.++...+.....+....++..+.+|+..-+ ..
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 6677888887666 3332222367889999999999998888877666653356788888886532 11
Q ss_pred CCcccEEEecccccccc
Q 027860 192 DASVDAVVGTLVLCSVK 208 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~~~~ 208 (217)
.+..|+++.+.......
T Consensus 87 ~GkidiLvnnag~~~~~ 103 (270)
T KOG0725|consen 87 FGKIDILVNNAGALGLT 103 (270)
T ss_pred CCCCCEEEEcCCcCCCC
Confidence 46799999887665543
No 479
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=43.31 E-value=42 Score=28.28 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=52.6
Q ss_pred CCeEEEECCC-CCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccCCCCCcccEEEecccc
Q 027860 126 AKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 126 ~~~VLDiGcG-~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~Vi~~~~l 204 (217)
+.+|.=||.| .|.....++-..+++|+-+|+|.+-++.....+. .+++.+..+...+.-.-.+.|+||..-.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~------~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG------GRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC------ceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence 4567778877 5777777777888999999999887777665532 34566666655554233467888765444
Q ss_pred ccccCh
Q 027860 205 CSVKDV 210 (217)
Q Consensus 205 ~~~~d~ 210 (217)
---..|
T Consensus 242 pgakaP 247 (371)
T COG0686 242 PGAKAP 247 (371)
T ss_pred cCCCCc
Confidence 433333
No 480
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.14 E-value=1.3e+02 Score=24.26 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=44.2
Q ss_pred CCCeEEEECCCC-CcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--------C--
Q 027860 125 KAKKVLEIGIGT-GPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V-- 190 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------~-- 190 (217)
.++.+|=.|++. +.++..+++ ..+.+|+.++.+....+..++...+.+ .. .++..|+.+.. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~---~~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG---SD-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC---Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 467888888742 233333332 456788888888643333333333333 12 45677776532 0
Q ss_pred CCCcccEEEeccccc
Q 027860 191 SDASVDAVVGTLVLC 205 (217)
Q Consensus 191 ~~~sfD~Vi~~~~l~ 205 (217)
.-+.+|++|.+..+.
T Consensus 80 ~~g~iDilVnnAG~~ 94 (274)
T PRK08415 80 DLGKIDFIVHSVAFA 94 (274)
T ss_pred HcCCCCEEEECCccC
Confidence 125789999988753
No 481
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=42.43 E-value=93 Score=25.52 Aligned_cols=78 Identities=17% Similarity=0.048 Sum_probs=44.0
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CC--CCcccEE
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVDAV 198 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~--~~sfD~V 198 (217)
.+++||=.| |+|..+..+++ ..+.+|+++.-+..-.+.........+.. .+++++.+|+.+.. +. -..+|+|
T Consensus 4 ~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~d~v 81 (322)
T PLN02986 4 GGKLVCVTG-ASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAK-ERLKLFKADLLEESSFEQAIEGCDAV 81 (322)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCC-CceEEEecCCCCcchHHHHHhCCCEE
Confidence 456777666 77777777664 34667887654443222222222211211 46788999886543 11 1247888
Q ss_pred Eecccc
Q 027860 199 VGTLVL 204 (217)
Q Consensus 199 i~~~~l 204 (217)
+.....
T Consensus 82 ih~A~~ 87 (322)
T PLN02986 82 FHTASP 87 (322)
T ss_pred EEeCCC
Confidence 877654
No 482
>PLN02253 xanthoxin dehydrogenase
Probab=42.30 E-value=1.1e+02 Score=24.52 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=47.2
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
.++++|=.| |+|.++..+++ ..+.+|+.+|.++...+...+.+.. + .++.++.+|+.+.. +.
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-E---PNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-C---CceEEEEeecCCHHHHHHHHHHHHHH
Confidence 466788777 44555555553 4577899999887665544433311 1 35778888886542 11
Q ss_pred CCcccEEEeccccc
Q 027860 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~Vi~~~~l~ 205 (217)
-+..|++|.+..+.
T Consensus 92 ~g~id~li~~Ag~~ 105 (280)
T PLN02253 92 FGTLDIMVNNAGLT 105 (280)
T ss_pred hCCCCEEEECCCcC
Confidence 14689999877653
No 483
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=41.98 E-value=87 Score=23.57 Aligned_cols=31 Identities=29% Similarity=0.144 Sum_probs=18.1
Q ss_pred eEEEECCC-CCcc-hHHhhhCCCCeEEEEcCCH
Q 027860 128 KVLEIGIG-TGPN-LKYYAADTDVQVLGVDPNR 158 (217)
Q Consensus 128 ~VLDiGcG-~G~~-~~~la~~~~~~v~giD~S~ 158 (217)
+|+=|||| .|.. ...|+..+-.+++.+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 36778887 3543 3344444444677777764
No 484
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=41.81 E-value=43 Score=26.41 Aligned_cols=76 Identities=22% Similarity=0.171 Sum_probs=40.5
Q ss_pred CCCeEEEECCC-CCcc-hHHhhhCCCCeEEEEc-------------------CCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027860 125 KAKKVLEIGIG-TGPN-LKYYAADTDVQVLGVD-------------------PNRKMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~~-~~~la~~~~~~v~giD-------------------~S~~~l~~a~~~~~~~~~~~~~i~~~~~ 183 (217)
...+|+=+||| .|.. +..|+..+-.+++.+| +-..-.+.+.+++.+.+.. -+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD-VEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC-CEEEEecc
Confidence 67799999998 4533 3345444444666664 3334455566666555421 23444433
Q ss_pred cccc--cC-CCCCcccEEEecc
Q 027860 184 VGEA--IP-VSDASVDAVVGTL 202 (217)
Q Consensus 184 d~~~--lp-~~~~sfD~Vi~~~ 202 (217)
.+.. +. + -..+|+|+...
T Consensus 99 ~i~~~~~~~~-~~~~DvVi~~~ 119 (228)
T cd00757 99 RLDAENAEEL-IAGYDLVLDCT 119 (228)
T ss_pred eeCHHHHHHH-HhCCCEEEEcC
Confidence 3311 11 1 13589998753
No 485
>PRK07775 short chain dehydrogenase; Provisional
Probab=41.71 E-value=1.6e+02 Score=23.48 Aligned_cols=76 Identities=11% Similarity=-0.099 Sum_probs=46.2
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-----
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 191 (217)
+.+.+|=.|+ +|.++..+++ ..+..|+.++.+..-++.........+ .++.++.+|+.+.. +.
T Consensus 9 ~~~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 9 DRRPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADG---GEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 4457787774 4556666554 356788888887765555444443333 35777888886532 10
Q ss_pred CCcccEEEecccc
Q 027860 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~Vi~~~~l 204 (217)
-+..|.||.+...
T Consensus 85 ~~~id~vi~~Ag~ 97 (274)
T PRK07775 85 LGEIEVLVSGAGD 97 (274)
T ss_pred cCCCCEEEECCCc
Confidence 1357888877654
No 486
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=41.69 E-value=71 Score=29.03 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=7.6
Q ss_pred CeEEEECCCCCcch
Q 027860 127 KKVLEIGIGTGPNL 140 (217)
Q Consensus 127 ~~VLDiGcG~G~~~ 140 (217)
.+|| |=||.|.++
T Consensus 136 ~~Vl-VlcGpGNNG 148 (544)
T PLN02918 136 SRVL-AICGPGNNG 148 (544)
T ss_pred CEEE-EEECCCcCH
Confidence 4555 556776553
No 487
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=41.15 E-value=1.5e+02 Score=24.47 Aligned_cols=77 Identities=19% Similarity=0.159 Sum_probs=45.1
Q ss_pred CCCeEEEECCCCCcchHHhhh----CC-CCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CC--CCccc
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA----DT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVD 196 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~----~~-~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~--~~sfD 196 (217)
.+++||=.| |+|..+..+++ .. +.+|+++|.+........+.. .. .++.++.+|+.+.. +. -..+|
T Consensus 3 ~~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~--~~~~~v~~Dl~d~~~l~~~~~~iD 76 (324)
T TIGR03589 3 NNKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PA--PCLRFFIGDVRDKERLTRALRGVD 76 (324)
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CC--CcEEEEEccCCCHHHHHHHHhcCC
Confidence 456788666 56776666654 22 357888887654332222211 11 36788899987653 11 02489
Q ss_pred EEEeccccccc
Q 027860 197 AVVGTLVLCSV 207 (217)
Q Consensus 197 ~Vi~~~~l~~~ 207 (217)
+||...+..+.
T Consensus 77 ~Vih~Ag~~~~ 87 (324)
T TIGR03589 77 YVVHAAALKQV 87 (324)
T ss_pred EEEECcccCCC
Confidence 99987765443
No 488
>PLN00016 RNA-binding protein; Provisional
Probab=41.13 E-value=37 Score=28.87 Aligned_cols=76 Identities=18% Similarity=0.111 Sum_probs=45.1
Q ss_pred CCCeEEEE---CCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHH----HHHHHcCCCCCCeEEEeccccccC--CCC
Q 027860 125 KAKKVLEI---GIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQ----TAAVAAGLPLTNFKFLQAVGEAIP--VSD 192 (217)
Q Consensus 125 ~~~~VLDi---GcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~----~~~~~~~~~~~~i~~~~~d~~~lp--~~~ 192 (217)
..++||=+ |.|+|..+..+++ ..+.+|++++.++....... ..... +....++++.+|+.++. +..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~--l~~~~v~~v~~D~~d~~~~~~~ 128 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSE--LSSAGVKTVWGDPADVKSKVAG 128 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhH--hhhcCceEEEecHHHHHhhhcc
Confidence 34578877 2488888887765 35679999998764321110 00000 00024678899887642 333
Q ss_pred CcccEEEecc
Q 027860 193 ASVDAVVGTL 202 (217)
Q Consensus 193 ~sfD~Vi~~~ 202 (217)
..+|+|+...
T Consensus 129 ~~~d~Vi~~~ 138 (378)
T PLN00016 129 AGFDVVYDNN 138 (378)
T ss_pred CCccEEEeCC
Confidence 5689998754
No 489
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=41.13 E-value=77 Score=26.98 Aligned_cols=76 Identities=18% Similarity=0.104 Sum_probs=41.4
Q ss_pred CCCeEEEECCCC-Cc-chHHhhhCCCCeEEEEcCCH-------------------HHHHHHHHHHHHcCCCCCCeEEEec
Q 027860 125 KAKKVLEIGIGT-GP-NLKYYAADTDVQVLGVDPNR-------------------KMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 125 ~~~~VLDiGcG~-G~-~~~~la~~~~~~v~giD~S~-------------------~~l~~a~~~~~~~~~~~~~i~~~~~ 183 (217)
...+||=||||. |. .+..|+..+-.+++.+|... .-++.+++++.+.+.. -+++....
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~-v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD-VKVTVSVR 105 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC-cEEEEEEe
Confidence 677999999983 43 34445544445677766653 3345566666665521 22333322
Q ss_pred cccc--c-CCCCCcccEEEecc
Q 027860 184 VGEA--I-PVSDASVDAVVGTL 202 (217)
Q Consensus 184 d~~~--l-p~~~~sfD~Vi~~~ 202 (217)
.+.. . .+ -..||+|+...
T Consensus 106 ~i~~~~~~~~-~~~~DvVvd~~ 126 (355)
T PRK05597 106 RLTWSNALDE-LRDADVILDGS 126 (355)
T ss_pred ecCHHHHHHH-HhCCCEEEECC
Confidence 2221 1 11 14689998753
No 490
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=40.93 E-value=99 Score=25.48 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=38.7
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CCCCcccEEE
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVDAVV 199 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~sfD~Vi 199 (217)
+||=.| |+|..+..+++ ..+.+|++++....-...........+ ..++.++.+|+.+.. +....+|+|+
T Consensus 2 ~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 2 RVLVTG-GSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred eEEEEC-CCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhc--CCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 455454 66776666654 346788888743211111111111111 024567778876542 3333689998
Q ss_pred ecccc
Q 027860 200 GTLVL 204 (217)
Q Consensus 200 ~~~~l 204 (217)
.....
T Consensus 79 h~a~~ 83 (338)
T PRK10675 79 HFAGL 83 (338)
T ss_pred ECCcc
Confidence 87644
No 491
>PRK07831 short chain dehydrogenase; Provisional
Probab=40.88 E-value=1.4e+02 Score=23.53 Aligned_cols=79 Identities=16% Similarity=0.101 Sum_probs=48.9
Q ss_pred CCCeEEEECCC---CCcchHHhhhCCCCeEEEEcCCHHHHHHHHHHHHH-cCCCCCCeEEEeccccccC-----CC----
Q 027860 125 KAKKVLEIGIG---TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-AGLPLTNFKFLQAVGEAIP-----VS---- 191 (217)
Q Consensus 125 ~~~~VLDiGcG---~G~~~~~la~~~~~~v~giD~S~~~l~~a~~~~~~-~~~~~~~i~~~~~d~~~lp-----~~---- 191 (217)
.++++|=.|++ -|..+.......+..|+.+|.++..++...+.+.. .+- .++.++.+|+.+.. +.
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGL--GRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCC--ceEEEEEccCCCHHHHHHHHHHHHH
Confidence 46678888752 34333332224567899999988777766665543 221 25778888876531 10
Q ss_pred -CCcccEEEeccccc
Q 027860 192 -DASVDAVVGTLVLC 205 (217)
Q Consensus 192 -~~sfD~Vi~~~~l~ 205 (217)
-+..|++|.+..+.
T Consensus 94 ~~g~id~li~~ag~~ 108 (262)
T PRK07831 94 RLGRLDVLVNNAGLG 108 (262)
T ss_pred HcCCCCEEEECCCCC
Confidence 14689999888754
No 492
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=40.86 E-value=1.4e+02 Score=23.90 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=20.1
Q ss_pred CCCeEEEECCC-CCcc-hHHhhhCCCCeEEEEcCC
Q 027860 125 KAKKVLEIGIG-TGPN-LKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~VLDiGcG-~G~~-~~~la~~~~~~v~giD~S 157 (217)
...+||=|||| .|.. +..|+..+-.+++.+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 67799999997 4543 333444444466666543
No 493
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.75 E-value=1.5e+02 Score=23.51 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=45.0
Q ss_pred CCCeEEEECCCCC-cchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC--------C--
Q 027860 125 KAKKVLEIGIGTG-PNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V-- 190 (217)
Q Consensus 125 ~~~~VLDiGcG~G-~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp--------~-- 190 (217)
.++.+|=.|++.| .++..+++ ..+.+|+.++.+....+..++...+.+ .+.++..|+.+.. .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD----APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc----cceEEecCcCCHHHHHHHHHHHHH
Confidence 5778899997652 44444443 456788888888654433333322222 2346677765431 0
Q ss_pred CCCcccEEEeccccc
Q 027860 191 SDASVDAVVGTLVLC 205 (217)
Q Consensus 191 ~~~sfD~Vi~~~~l~ 205 (217)
.-+..|+++.+..+.
T Consensus 85 ~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 85 EWGRLDFLLHSIAFA 99 (258)
T ss_pred HcCCCCEEEEcCccC
Confidence 115689999887653
No 494
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=40.70 E-value=48 Score=26.41 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=31.7
Q ss_pred CCCCeEEEECCCC-CcchHHhhhCCCCe-EEEEcCCHHHHHHHHHH
Q 027860 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 124 ~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~giD~S~~~l~~a~~~ 167 (217)
.++.+||=.|+|. |..+..+++..+.+ +++++.+++..+.+++.
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 3677888888764 55666666666666 99999998887766653
No 495
>PRK12827 short chain dehydrogenase; Provisional
Probab=40.68 E-value=1.6e+02 Score=22.69 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCCeEEEECCCCCcchHHhhh---CCCCeEEEEcC----CHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----CC-
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDP----NRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS- 191 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~---~~~~~v~giD~----S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~~- 191 (217)
.++++|=.| |+|.++..+++ ..+.++++++. +...++...+.....+ .++.++.+|+.+.. +.
T Consensus 5 ~~~~ilItG-asg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 5 DSRRVLITG-GSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAG---GKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHH
Confidence 456777666 55555555543 45668888764 3333443333333333 46788889886642 11
Q ss_pred ----CCcccEEEecccccc
Q 027860 192 ----DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ----~~sfD~Vi~~~~l~~ 206 (217)
.+.+|.||.+.+...
T Consensus 81 ~~~~~~~~d~vi~~ag~~~ 99 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIAT 99 (249)
T ss_pred HHHHhCCCCEEEECCCCCC
Confidence 146899988776543
No 496
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=40.63 E-value=14 Score=31.62 Aligned_cols=77 Identities=12% Similarity=-0.047 Sum_probs=50.0
Q ss_pred CCCeEEEECCCCCcchHHhhh-CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-CCCCcccEEEec
Q 027860 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~VLDiGcG~G~~~~~la~-~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~Vi~~ 201 (217)
.+..+||++|+.+.....++. .+-.+--|+++..+.+..+..+-.+.+-......+..+|....+ +-...|+++...
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~ 258 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSF 258 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhc
Confidence 457899999999999988875 33356678999999888887654332211134456666666554 333455555443
No 497
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=40.53 E-value=1.2e+02 Score=23.89 Aligned_cols=72 Identities=17% Similarity=-0.041 Sum_probs=45.2
Q ss_pred eEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----CCCc
Q 027860 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDAS 194 (217)
Q Consensus 128 ~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~~~s 194 (217)
++|=.|++.| ++..+++ ..+.+|+.++.++..++.+.+.+... .++.++..|+.+.. + .-+.
T Consensus 2 ~vlItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 2 NVLVTASSRG-IGFNVARELLKKGARVVISSRNEENLEKALKELKEY----GEVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred eEEEEcCCcH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 4666675543 4444432 45678999999988777666655433 24677888875431 1 1146
Q ss_pred ccEEEecccc
Q 027860 195 VDAVVGTLVL 204 (217)
Q Consensus 195 fD~Vi~~~~l 204 (217)
+|++|.+...
T Consensus 77 id~li~naG~ 86 (259)
T PRK08340 77 IDALVWNAGN 86 (259)
T ss_pred CCEEEECCCC
Confidence 8999987764
No 498
>PLN02740 Alcohol dehydrogenase-like
Probab=40.44 E-value=46 Score=28.29 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=30.9
Q ss_pred CCCCeEEEECCC-CCcchHHhhhCCCC-eEEEEcCCHHHHHHHHH
Q 027860 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~VLDiGcG-~G~~~~~la~~~~~-~v~giD~S~~~l~~a~~ 166 (217)
.++.+||=+|+| .|.++..+++..+. .|+++|.+++-++.+++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 467888888865 33444555665666 69999999988887754
No 499
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.25 E-value=1.4e+02 Score=25.12 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcchHHhhhC---CCCeEEEEcCCHHHHHHH
Q 027860 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYA 164 (217)
Q Consensus 113 ~~~~~~~~~l~~~~~~VLDiGcG~G~~~~~la~~---~~~~v~giD~S~~~l~~a 164 (217)
.....++.... ....|+.+|||.-.+...|... ....++=||.++....+.
T Consensus 76 ~~v~~Fl~~~~-~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 76 HAVRAFLEQTD-GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred HHHHHHHHhcC-CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 34444444432 5678999999999888887752 345678888887666665
No 500
>PRK07024 short chain dehydrogenase; Provisional
Probab=40.16 E-value=1.2e+02 Score=23.96 Aligned_cols=74 Identities=12% Similarity=-0.016 Sum_probs=45.5
Q ss_pred CeEEEECCCCCcchHHhhh---CCCCeEEEEcCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccC-----C-----CCC
Q 027860 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDA 193 (217)
Q Consensus 127 ~~VLDiGcG~G~~~~~la~---~~~~~v~giD~S~~~l~~a~~~~~~~~~~~~~i~~~~~d~~~lp-----~-----~~~ 193 (217)
++||=.|+ +|.++..+++ ..+.+++.+|.+.+.++...+.+... .++.++.+|+.+.. + .-+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA----ARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC----CeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45666665 4445555443 45678999999887666544433211 15778888886532 0 113
Q ss_pred cccEEEeccccc
Q 027860 194 SVDAVVGTLVLC 205 (217)
Q Consensus 194 sfD~Vi~~~~l~ 205 (217)
..|+++.+....
T Consensus 78 ~id~lv~~ag~~ 89 (257)
T PRK07024 78 LPDVVIANAGIS 89 (257)
T ss_pred CCCEEEECCCcC
Confidence 579999887654
Done!