BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027862
         (217 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O23024|YUC3_ARATH Flavin-containing monooxygenase YUCCA3 OS=Arabidopsis thaliana
           GN=YUC3 PE=2 SV=1
          Length = 437

 Score = 32.7 bits (73), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 19/119 (15%)

Query: 91  SWQPASCAVPRFDG-----GDFLR--------RYRGKRIMFVGDSLSLNMWESLSCMIHA 137
           + + A   VP F+G     GD L         RY+GK+++ VG   S  M  SL    H 
Sbjct: 170 TGENAEKVVPDFEGLEDFGGDVLHAGDYKSGGRYQGKKVLVVGCGNS-GMEVSLDLYNHG 228

Query: 138 SVPN----AKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAG 192
           + P+    +    + +E     +F E GVT++ Y   +L D     + R++  N+ + G
Sbjct: 229 ANPSMVVRSAVHVLPREIFGKSTF-ELGVTMMKYMPVWLADKTILFLARIILGNTDKYG 286


>sp|O49312|YUC7_ARATH Putative flavin-containing monooxygenase YUCCA7 OS=Arabidopsis
           thaliana GN=YUC7 PE=3 SV=1
          Length = 431

 Score = 32.7 bits (73), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 19/99 (19%)

Query: 93  QPASCAVPRFDG-----GDFL--------RRYRGKRIMFVGDSLSLNMWESLSCMIHASV 139
           + A   VP F+G     GD L         RYRGKR++ VG   S  M  SL    H + 
Sbjct: 167 ENAEKVVPEFEGLEDFGGDVLHAGDYKSGERYRGKRVLVVGCGNS-GMEVSLDLCNHDAS 225

Query: 140 PN----AKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVD 174
           P+    +    + +E L   +F E  VT++ +   +LVD
Sbjct: 226 PSMVVRSSVHVLPREVLGKSTF-ELSVTMMKWMPVWLVD 263


>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
           GN=rme-6 PE=3 SV=1
          Length = 1104

 Score = 31.2 bits (69), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 145 SFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDV 200
           + +RKET  S  F +Y V  +     YL   +++ V     LN IQ G FW D+D+
Sbjct: 179 TMLRKETSISTRFYKYFVEQMHPTMVYLTKALRKSV-----LNVIQLGNFWLDVDM 229


>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 30.8 bits (68), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 92  WQPASCAVPRFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHASV 139
           WQP  C + ++   +     R KRI FVGDS    ++ S   M++  V
Sbjct: 64  WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMNPEV 111


>sp|O07600|FABH2_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 OS=Bacillus
           subtilis (strain 168) GN=fabHB PE=2 SV=1
          Length = 325

 Score = 30.4 bits (67), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 26/97 (26%)

Query: 118 FVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVK 177
           FV  S +L M ES+ C         KT F  ++TL+SV  E YG T              
Sbjct: 247 FVPHSANLRMIESI-C--------EKTPFPIEKTLTSV--EHYGNT-------------- 281

Query: 178 QKVGRVLTLN-SIQAGKFWKDMDVLIFNSWHWWTHTG 213
             V  VL L+ +++AGK  KD  VL+F      T+TG
Sbjct: 282 SSVSIVLALDLAVKAGKLKKDQIVLLFGFGGGLTYTG 318


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,362,975
Number of Sequences: 539616
Number of extensions: 3211549
Number of successful extensions: 8001
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7997
Number of HSP's gapped (non-prelim): 7
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)