BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027863
(217 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 174/207 (84%), Positives = 187/207 (90%), Gaps = 1/207 (0%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS A S+G EMLGNPLN S A R++AP +S PST K VALFSKKKAAPP K+
Sbjct: 1 MASLAASRA-AGSLGVSEMLGNPLNFSGATRSAAPTSSTPSTLKTVALFSKKKAAPPPKA 59
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSPV++ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 60 KPAAVSPVDDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 119
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
+KYQAYELIHARWAMLGAAGFI+PEAFNKFGANCGPEAVWFKTGALLLDG TLNYFG +I
Sbjct: 120 AKYQAYELIHARWAMLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSI 179
Query: 181 PINLVFAVIAEIVLVGGAEYYRITNGF 207
PINLV AVIAE+VL+GGAEYYRI NG
Sbjct: 180 PINLVVAVIAEVVLLGGAEYYRIINGL 206
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/194 (84%), Positives = 175/194 (90%), Gaps = 2/194 (1%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A R+++P AS P+TFK VALFSKKK A K KP AVSP + ELAK
Sbjct: 14 GVSEMLGNPLNFSGATRSASPAASTPATFKTVALFSKKKPA--PKPKPSAVSPADVELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++L
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVIL 191
Query: 195 VGGAEYYRITNGFG 208
VGGAEY+RITNG G
Sbjct: 192 VGGAEYFRITNGLG 205
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/194 (84%), Positives = 176/194 (90%), Gaps = 2/194 (1%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A R+++P A+ P+TFK VALFSKKKAA K KP AVSP + ELAK
Sbjct: 14 GVSEMLGNPLNFSGATRSASPAATTPATFKTVALFSKKKAA--PKPKPSAVSPADVELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++L
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVIL 191
Query: 195 VGGAEYYRITNGFG 208
VGGAEY+RITNG G
Sbjct: 192 VGGAEYFRITNGLG 205
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/193 (85%), Positives = 173/193 (89%), Gaps = 2/193 (1%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A RT AP AS+P+TFK VALFSKKKAAP VSP +EELAK
Sbjct: 14 GVSEMLGNPLNFSGASRT-APSASSPATFKTVALFSKKKAAPAKAKP-APVSPADEELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIP YLTGEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+FAV+AE+VL
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVL 191
Query: 195 VGGAEYYRITNGF 207
VGGAEYYRI NG
Sbjct: 192 VGGAEYYRIINGL 204
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 168/207 (81%), Positives = 180/207 (86%), Gaps = 6/207 (2%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ E+LGNP+N+ A R SAP + P+TFK VALFSKKK APP K
Sbjct: 1 MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55 KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK I
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPI 174
Query: 181 PINLVFAVIAEIVLVGGAEYYRITNGF 207
PINL+ AV+AEIVLVGGAEYYRI NG
Sbjct: 175 PINLILAVVAEIVLVGGAEYYRIINGL 201
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/207 (80%), Positives = 179/207 (86%), Gaps = 6/207 (2%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ E+LGNP+N+ A R SAP + P+TFK VALFSKKK APP K
Sbjct: 1 MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55 KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK I
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPI 174
Query: 181 PINLVFAVIAEIVLVGGAEYYRITNGF 207
PIN + AV+AEIVLVGGAEYYRI NG
Sbjct: 175 PINFILAVVAEIVLVGGAEYYRIINGL 201
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/208 (80%), Positives = 178/208 (85%), Gaps = 7/208 (3%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ EMLGNP+++ A R SAP S P TFK VALFSKKKAAPP
Sbjct: 1 MASLAASTA-----AMSEMLGNPVSLRGATR-SAPSPSTPVTFKTVALFSKKKAAPPPPK 54
Query: 61 KPVA-VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
K A VSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+D
Sbjct: 55 KKPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPED 114
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK
Sbjct: 115 FAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 174
Query: 180 IPINLVFAVIAEIVLVGGAEYYRITNGF 207
IPINL+ AV+AEIVLVGGAEYYRI NG
Sbjct: 175 IPINLIVAVVAEIVLVGGAEYYRIINGL 202
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 159/198 (80%), Positives = 173/198 (87%), Gaps = 1/198 (0%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPG-ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVN 69
A S+ EMLG+P+ S R +AP AS+P+TFK VALF KK AA P K+K A SP++
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPTPASSPATFKTVALFKKKSAAAPVKAKAAAASPLD 63
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
+ELAKWYGPDRRIFLPEGLLD+SEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELI
Sbjct: 64 DELAKWYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELI 123
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 189
HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL YFGKNIPINLV AVI
Sbjct: 124 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKNIPINLVLAVI 183
Query: 190 AEIVLVGGAEYYRITNGF 207
AE+VLVGGAEYYRI NG
Sbjct: 184 AEVVLVGGAEYYRIINGL 201
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 152/197 (77%), Positives = 166/197 (84%), Gaps = 2/197 (1%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+G EMLG PLN + R SAP AS P+TFK VALFSKKK A K VS N+
Sbjct: 3 ATSLGVSEMLGTPLNFRAVSRPSAPLASIPATFKTVALFSKKKPA--PPPKAKTVSAAND 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIH
Sbjct: 61 ELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARWAMLGAAG IIPEA NK+GANCGPEAVWFKTGALLLDGNTL+YFGKNIPINLV AV+
Sbjct: 121 ARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKNIPINLVLAVVG 180
Query: 191 EIVLVGGAEYYRITNGF 207
E+VL+GGAEYYRITNG
Sbjct: 181 EVVLLGGAEYYRITNGL 197
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 155/193 (80%), Positives = 164/193 (84%), Gaps = 4/193 (2%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EML NPL+ SS SAP S P+TFK VALF KK AAP A VN+ELAK
Sbjct: 14 GVSEMLRNPLSFSS---RSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASP-VNDELAK 69
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG NIPINL+ AVIAE+VL
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVL 189
Query: 195 VGGAEYYRITNGF 207
VGGAEYYRI NG
Sbjct: 190 VGGAEYYRIINGL 202
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 157/193 (81%), Positives = 169/193 (87%), Gaps = 1/193 (0%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N S A R + AS+P++FK VALFSKKKA P K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINFSGATRPAPS-ASSPASFKTVALFSKKKATPTPPKKAAAAAPANDELAK 72
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVL
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVL 192
Query: 195 VGGAEYYRITNGF 207
VGGAEYYRI NG
Sbjct: 193 VGGAEYYRIINGL 205
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/193 (81%), Positives = 170/193 (88%), Gaps = 3/193 (1%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N+S A R + AS+P++FK VALFSKKKAA K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINLSGATRPAPS-ASSPASFKTVALFSKKKAA--PPKKAAAAAPANDELAK 70
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DFSKYQA+ELIHARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVL
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVL 190
Query: 195 VGGAEYYRITNGF 207
VGGAEYYRI NG
Sbjct: 191 VGGAEYYRIINGL 203
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/193 (81%), Positives = 169/193 (87%), Gaps = 3/193 (1%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N+S A R + AS+P++FK VALFSKKKAA K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINLSGATRPAPS-ASSPASFKTVALFSKKKAA--PPKKAAAAAPANDELAK 70
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP GLSKKP+DFSKYQA+ELIHARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVL
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVL 190
Query: 195 VGGAEYYRITNGF 207
VGGAEYYRI NG
Sbjct: 191 VGGAEYYRIINGL 203
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/202 (72%), Positives = 166/202 (82%), Gaps = 12/202 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ ++LG LN + + R T+AP A K V+LFSKK P K KP AVS
Sbjct: 2 AALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPAAVSSSS 55
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQA
Sbjct: 56 PDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQA 115
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
YELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV
Sbjct: 116 YELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLV 175
Query: 186 FAVIAEIVLVGGAEYYRITNGF 207
AVIAE+VLVGGAEYYRITNG
Sbjct: 176 VAVIAEVVLVGGAEYYRITNGL 197
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 161/193 (83%), Positives = 167/193 (86%), Gaps = 1/193 (0%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S R+SAP SN S FK VALFSKKKAAPP +EELAK
Sbjct: 14 GVSEMLGNPLNFSGGARSSAPTPSNSSIFKTVALFSKKKAAPPKPKAAAVAP-ADEELAK 72
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVVL 192
Query: 195 VGGAEYYRITNGF 207
VGGAEYYRI NG
Sbjct: 193 VGGAEYYRIINGL 205
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/202 (72%), Positives = 166/202 (82%), Gaps = 12/202 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ ++LG LN + + R T+AP A K V+LFSKK P K KP AVS
Sbjct: 2 AALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPAAVSSSS 55
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQA
Sbjct: 56 PDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQA 115
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
YELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV
Sbjct: 116 YELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLV 175
Query: 186 FAVIAEIVLVGGAEYYRITNGF 207
AVIAE++LVGGAEYYRITNG
Sbjct: 176 VAVIAEVILVGGAEYYRITNGL 197
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/196 (78%), Positives = 165/196 (84%), Gaps = 4/196 (2%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG+PL + A R S+ AS P+ K VALFSKKKAA P N+E
Sbjct: 2 ASLGVSEMLGSPLKFAVASRPSSASASTPA--KIVALFSKKKAA--PAKTKAPPPPANDE 57
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSE+P YL GEVPGDYGYDPFGL KKP+DF+KYQAYELIHA
Sbjct: 58 LAKWYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHA 117
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AVIAE
Sbjct: 118 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVIAE 177
Query: 192 IVLVGGAEYYRITNGF 207
+VL+GGAEYYRI NG
Sbjct: 178 VVLLGGAEYYRIINGL 193
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 172/196 (87%), Gaps = 3/196 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+P+TFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPATFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178
Query: 192 IVLVGGAEYYRITNGF 207
+VL+GGAEYYRITNG
Sbjct: 179 VVLLGGAEYYRITNGL 194
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/201 (72%), Positives = 164/201 (81%), Gaps = 12/201 (5%)
Query: 13 SIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP--- 67
++ ++LG LN + + R T+AP A K V+LFSKK P K KPV VS
Sbjct: 2 ALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPVPVSSSSP 55
Query: 68 -VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 126
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAY
Sbjct: 56 DISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAY 115
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 186
ELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV
Sbjct: 116 ELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLVV 175
Query: 187 AVIAEIVLVGGAEYYRITNGF 207
AVIAE+VLVGGAEYYRI NG
Sbjct: 176 AVIAEVVLVGGAEYYRIINGL 196
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/199 (71%), Positives = 164/199 (82%), Gaps = 6/199 (3%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAYEL
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYEL 118
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AV
Sbjct: 119 IHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAV 178
Query: 189 IAEIVLVGGAEYYRITNGF 207
IAE+VLVGGAEYYRI NG
Sbjct: 179 IAEVVLVGGAEYYRIINGL 197
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/197 (80%), Positives = 173/197 (87%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+ EMLG+P+ S R +AP S+ +TFK VALF KK AA PAK+K AVSP ++
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPSPSSSATFKTVALFKKKAAAAPAKAKAAAVSPADD 63
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSEIPEYL GEVPG+YGYDPFGLSKKP+DF+KYQAYELIH
Sbjct: 64 ELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIH 123
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+ AV+A
Sbjct: 124 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLILAVVA 183
Query: 191 EIVLVGGAEYYRITNGF 207
E+VLVGGAEYYRI NG
Sbjct: 184 EVVLVGGAEYYRIINGL 200
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/197 (79%), Positives = 174/197 (88%), Gaps = 1/197 (0%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+ EMLG+P+ S R +AP S+P+TFK VALF KK AA PAK VA++P +E
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPTPSSPATFKTVALFKKKAAAAPAKKA-VAIAPADE 62
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIH
Sbjct: 63 ELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIH 122
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARWAMLGAAGF+IPEAFNKFGA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 123 ARWAMLGAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 182
Query: 191 EIVLVGGAEYYRITNGF 207
E+VL+GGAEYYRITNG
Sbjct: 183 EVVLLGGAEYYRITNGL 199
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 166/217 (76%), Gaps = 10/217 (4%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGLSKKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
TL+YFG +IPINL+ AV+AE++LVGGAEYYR TNG
Sbjct: 181 GTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGL 217
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 156/196 (79%), Positives = 172/196 (87%), Gaps = 3/196 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+PSTFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178
Query: 192 IVLVGGAEYYRITNGF 207
+VL+GGAEYYRITNG
Sbjct: 179 VVLLGGAEYYRITNGL 194
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/217 (65%), Positives = 166/217 (76%), Gaps = 10/217 (4%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGLSKKP++F KYQAYELIHARWAMLGAAGFI+PEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
TL+YFG +IPINL+ AV+AE++LVGGAEYYR TNG
Sbjct: 181 GTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGL 217
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 172/196 (87%), Gaps = 3/196 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+PSTFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178
Query: 192 IVLVGGAEYYRITNGF 207
+VL+GG+EYYRITNG
Sbjct: 179 VVLLGGSEYYRITNGL 194
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/217 (65%), Positives = 165/217 (76%), Gaps = 10/217 (4%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGL KKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
TL+YFG +IPINL+ AV+AE++LVGGAEYYR TNG
Sbjct: 181 GTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGL 217
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/217 (65%), Positives = 165/217 (76%), Gaps = 10/217 (4%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGLSKKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
TL+YFG +I INL+ AV+AE++LVGGAEYYR TNG
Sbjct: 181 GTLSYFGASIHINLIAAVVAEVILVGGAEYYRATNGL 217
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 148/199 (74%), Positives = 162/199 (81%), Gaps = 6/199 (3%)
Query: 12 ASIGAKEMLGNPLN--VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ +MLG LN VSS T+AP K V+LFSKK A P + + SP +
Sbjct: 2 AALAPSKMLGTRLNFAVSSRYATAAP---TTGAQKIVSLFSKKPAPKPKPAAVTSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
+ELAKWYGPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSKKP+DFSKYQAYEL
Sbjct: 59 GDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYEL 118
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV
Sbjct: 119 IHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAV 178
Query: 189 IAEIVLVGGAEYYRITNGF 207
AE+VLVGGAEYYRI NG
Sbjct: 179 AAEVVLVGGAEYYRIINGL 197
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/200 (72%), Positives = 161/200 (80%), Gaps = 2/200 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV A
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAA 180
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
E+VLVGGAEYYRI NG Q
Sbjct: 181 EVVLVGGAEYYRIINGLVSQ 200
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 160/200 (80%), Gaps = 8/200 (4%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---- 67
A++ +MLG LN + + R AP A K V+LFSKK P K+KP S
Sbjct: 2 AALAPTKMLGTRLNFAGSSRY-APAAPTSGAQKIVSLFSKK---PAQKAKPATASSSGSD 57
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+ +ELAKWYGPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYE
Sbjct: 58 IGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 187
LIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL A
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVA 177
Query: 188 VIAEIVLVGGAEYYRITNGF 207
V+AE+VLVGGAEYYRI NG
Sbjct: 178 VVAEVVLVGGAEYYRIINGL 197
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/197 (73%), Positives = 160/197 (81%), Gaps = 2/197 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV A
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAA 180
Query: 191 EIVLVGGAEYYRITNGF 207
E+VLVGGAEYYRI NG
Sbjct: 181 EVVLVGGAEYYRIINGL 197
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/200 (71%), Positives = 159/200 (79%), Gaps = 8/200 (4%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---- 67
A++ +MLG LN + + R AP A K V+LFSKK P K+KP S
Sbjct: 2 AALAPTKMLGTRLNFAGSSRY-APAAPTSGAQKIVSLFSKK---PAQKAKPATASSSGSD 57
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+ +ELAKWYGPDRRIFL EGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYE
Sbjct: 58 IGDELAKWYGPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 187
LIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL A
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVA 177
Query: 188 VIAEIVLVGGAEYYRITNGF 207
V+AE+VLVGGAEYYRI NG
Sbjct: 178 VVAEVVLVGGAEYYRIINGL 197
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 120/139 (86%), Positives = 131/139 (94%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
+EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYEL
Sbjct: 54 SEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYEL 113
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV
Sbjct: 114 IHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAV 173
Query: 189 IAEIVLVGGAEYYRITNGF 207
+AE++LVGGAEYYR TNG
Sbjct: 174 VAEVILVGGAEYYRATNGL 192
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 118/140 (84%), Positives = 128/140 (91%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
N+ELAKWYG RRI+LPEG+LDRS++PEYLTGEVPGDYG+DPFGLSKKP DF KYQAYEL
Sbjct: 52 NDELAKWYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYEL 111
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAMLGAAGF+IPEAFNKFGA CGPEAVWFKTGALLLDG TLNYFG NIPINLV AV
Sbjct: 112 IHARWAMLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAV 171
Query: 189 IAEIVLVGGAEYYRITNGFG 208
+AE++LVGGAEYYR N G
Sbjct: 172 LAEVILVGGAEYYRSINNLG 191
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 147/202 (72%), Positives = 163/202 (80%), Gaps = 9/202 (4%)
Query: 12 ASIGAKEMLGNPLNV--SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVS--- 66
A++ +MLG LN SS+ T+AP A K V+LF P AK KP VS
Sbjct: 2 AALAPTKMLGTRLNFTGSSSYTTAAPTAGAK---KIVSLFGGFNKKPAAKPKPAPVSSSG 58
Query: 67 -PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRIFLP+GLLDRSE+PEYL GEVPGDYGYDPFGLSKKPDDF+KYQA
Sbjct: 59 ADIDDELAKWYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQA 118
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
YELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 119 YELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLI 178
Query: 186 FAVIAEIVLVGGAEYYRITNGF 207
AV+AE+VLVGGAEYYRI NG
Sbjct: 179 LAVVAEVVLVGGAEYYRIINGL 200
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 130/183 (71%), Positives = 150/183 (81%), Gaps = 6/183 (3%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAYEL
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYEL 118
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AV
Sbjct: 119 IHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAV 178
Query: 189 IAE 191
IAE
Sbjct: 179 IAE 181
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 131/181 (72%), Positives = 146/181 (80%), Gaps = 2/181 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV A
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAA 180
Query: 191 E 191
E
Sbjct: 181 E 181
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/202 (69%), Positives = 162/202 (80%), Gaps = 9/202 (4%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ +MLG L+ + + R T+AP A K V+LF + P K KP V+
Sbjct: 2 AALAPTKMLGTRLDFAGSSRYATAAPTAGAQ---KIVSLFDRFNKKPAPKPKPAPVATSS 58
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRI+LP GLLDRSE+PEYL GEVPGDYGYDPFGL KKP+DF+KYQA
Sbjct: 59 AGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQA 118
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
+ELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 119 FELIHARWAMLGAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLI 178
Query: 186 FAVIAEIVLVGGAEYYRITNGF 207
AV+AE+VLVGGAEYYRITNG
Sbjct: 179 LAVVAEVVLVGGAEYYRITNGL 200
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 113/139 (81%), Positives = 127/139 (91%)
Query: 67 PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 126
P NEELAKWYGPDRRI+LPEGLL + EIP YLTGEVPGDYGYDPFGLSKKP+DF +YQAY
Sbjct: 40 PSNEELAKWYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAY 99
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 186
ELIHARWAMLGAAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +PINL
Sbjct: 100 ELIHARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAA 159
Query: 187 AVIAEIVLVGGAEYYRITN 205
AVIAE++LVGGAEYYR TN
Sbjct: 160 AVIAEVILVGGAEYYRSTN 178
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/136 (81%), Positives = 126/136 (92%)
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
EELAKWYGPDRRI+LPEGLL + EIPEYLTGEVPGDYGYDPFGLSKKP+DF +YQAYELI
Sbjct: 1 EELAKWYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELI 60
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 189
HARWAMLGAAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +P+NL AVI
Sbjct: 61 HARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVI 120
Query: 190 AEIVLVGGAEYYRITN 205
AE++LVGGAEYYR TN
Sbjct: 121 AEVILVGGAEYYRSTN 136
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 141/217 (64%), Positives = 163/217 (75%), Gaps = 11/217 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGA-----SNPSTFKPVALFS----- 50
MAS+ A + AA A ++L NPLN++ ++A ++PS + V+LF
Sbjct: 1 MASMRALGSTAALGRADQILWNPLNLNKLAASTAASRSSTRPTSPS-LQVVSLFGFKKKA 59
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
PP A +P EELAKWYGPDRRIFLPEGLLDR +IPEYL GEVPGDYGYDP
Sbjct: 60 APPPPPPKSKAKAAAAPATEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDP 119
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGL +KP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 120 FGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 179
Query: 171 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
TL+YFG +IPINL+ AV+AE+VLVGGAEYYR TNG
Sbjct: 180 GTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGL 216
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 118/131 (90%), Positives = 124/131 (94%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
GPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAML
Sbjct: 6 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 65
Query: 137 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 196
GAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VLVG
Sbjct: 66 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVG 125
Query: 197 GAEYYRITNGF 207
GAEYYRI NG
Sbjct: 126 GAEYYRIINGL 136
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 145/194 (74%), Gaps = 10/194 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGLSKKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINL 184
TL+YFG +IPIN
Sbjct: 181 GTLSYFGASIPINF 194
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/115 (89%), Positives = 108/115 (93%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E+PEYL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAMLGAAGFIIPEA NKFGA
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
NCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VLVGGAEYYRI NG
Sbjct: 61 NCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGL 115
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/149 (67%), Positives = 115/149 (77%), Gaps = 8/149 (5%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
+++P A S + WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+
Sbjct: 35 RARPTAASG-----SPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPE 86
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLG AGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG
Sbjct: 87 TFAKNRELEVIHCRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGN 146
Query: 179 NIPINLVFAVIAEIVLVGGAEYYRITNGF 207
+IPINL+ AVIAE+VLVGGAEYYRI NG
Sbjct: 147 SIPINLILAVIAEVVLVGGAEYYRIINGL 175
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/85 (91%), Positives = 82/85 (96%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AVIAE+VL+GGAEYYRITNG
Sbjct: 61 NLVLAVIAEVVLLGGAEYYRITNGL 85
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/188 (48%), Positives = 111/188 (59%), Gaps = 30/188 (15%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVN-------------------EELAKWYGPDRRIFLPEG 87
ALF K A+ PAK + V +L KWYGPDR++FLP G
Sbjct: 5 ALFKKTGASAPAKKGTASTKVVKPSKAGGKATRGWLGGQGGAADLDKWYGPDRKLFLPSG 64
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L DRSEIPEYL GE+ GDYGYDP GL K P+ +KY+ EL+HARWAML AAG +IPE
Sbjct: 65 LYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGL 124
Query: 148 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA-EIVLVGGAEY 200
GAN WF+TGA +L+G TLNYF +P +V FAVIA E+ L+G E+
Sbjct: 125 QANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAVEVGLMGAVEF 181
Query: 201 YRITNGFG 208
YR NG G
Sbjct: 182 YR-RNGTG 188
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/187 (49%), Positives = 115/187 (61%), Gaps = 23/187 (12%)
Query: 38 SNPSTFKPVALFSKKKAAP---PAKSKPVAVSPVN----------EELAKWYGPDRRIFL 84
S K ALFSK K+AP P+ K A + + L KWYGP R +FL
Sbjct: 14 STSRVVKVNALFSKGKSAPKRSPSPKKSAAGTKKTGGWLGGEGGAQNLDKWYGPSRVLFL 73
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
P GLL+RS++P YLTG++ GDYGYDP GL K P+ KY+A+ELIHARWAML AAG IIP
Sbjct: 74 PSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWAMLAAAGMIIP 133
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA-EIVLVGG 197
E GA+ A WF+TGA +L+G TLNYF +P +V FA++A E+ L+G
Sbjct: 134 EGLAANGADI-KGATWFETGAEMLNGGTLNYFA--VPWAIVSNPLPLFAIVAVEVGLMGA 190
Query: 198 AEYYRIT 204
AE YR T
Sbjct: 191 AENYRRT 197
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 111/185 (60%), Gaps = 27/185 (14%)
Query: 47 ALFSKKKAAPPAK---SKPVAVSPVNE-------------ELAKWYGPDRRIFLPEGLLD 90
ALF K A+ PAK S V P + L KWYGPDR +FLP GL D
Sbjct: 5 ALFKKTAASAPAKKGTSSTKVVKPSGKATKGWLGGQGGAVNLDKWYGPDRVLFLPSGLYD 64
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
RSE+P YL GE+ GDYGYDP GL K + +KY+ YEL+HARWAML AAG +IPE
Sbjct: 65 RSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQAN 124
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA-EIVLVGGAEYYRI 203
GAN VWF+TGA +L+G TLNYF +P +V FAVIA E+ L+G E+YR
Sbjct: 125 GANI-KGGVWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAIEVGLMGAVEFYR- 180
Query: 204 TNGFG 208
NG G
Sbjct: 181 RNGTG 185
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 100/145 (68%), Gaps = 11/145 (7%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
+L KWYGPDR++FLP GL DRSEIP+YL GE+ GDYGYDP GL K P+ +KY+ EL+H
Sbjct: 18 DLDKWYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLH 77
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV----- 185
ARWAML AAG +IPE GAN WF+TGA +L+G TLNYF +P +V
Sbjct: 78 ARWAMLAAAGILIPEGLQANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLP 134
Query: 186 -FAVIA-EIVLVGGAEYYRITNGFG 208
FAVIA E+ L+G E+YR NG G
Sbjct: 135 LFAVIAVEVGLMGAVEFYR-RNGSG 158
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 94/126 (74%), Gaps = 2/126 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAML 136
ARW +L
Sbjct: 121 ARWVVL 126
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
+L KWYGP+R++FLP GLLDR ++PEYL GE+ GDYGYDP GL K + KY+A EL+H
Sbjct: 42 DLEKWYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLH 101
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-----KNIPINLV 185
ARWAML AAG +IPE GA+ WF+TGA +L+G TLNYF P+ L
Sbjct: 102 ARWAMLAAAGILIPEGLQANGADI-KGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLA 160
Query: 186 FAVIAEIVLVGGAEYYRI 203
+ EIVL+G E +R+
Sbjct: 161 AVTLIEIVLLGAVEKFRV 178
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 87/138 (63%), Gaps = 6/138 (4%)
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
+ L KWYGP R +FLP GLLD S++P YL G + GDYGYDP GL K KY+AYELI
Sbjct: 88 QGLDKWYGPSRALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELI 147
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-----NIPINL 184
HARWAML AAG IIPE GA WF+TGA +L+G TLNYF N P+ L
Sbjct: 148 HARWAMLAAAGIIIPEGLQANGAAI-KGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPL 206
Query: 185 VFAVIAEIVLVGGAEYYR 202
V+ E+ L+G E YR
Sbjct: 207 FLVVVIEVALLGAVERYR 224
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
L KWYGPDR +FLP GL+ R EI L G +PGDYGYDP GL+K + SKYQA EL+HA
Sbjct: 45 LDKWYGPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHA 104
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI-----PINLVF 186
RWAML AAG IIPE GA+ A WF+TGA +L+G TLN+F I P+ L
Sbjct: 105 RWAMLAAAGAIIPEGLAANGADV-KGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFV 163
Query: 187 AVIAEIVLVGGAEYYRIT 204
V A + L+G AE YR T
Sbjct: 164 VVAANVALMGAAENYRRT 181
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 82/85 (96%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VL+GGAEYYRITNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGL 85
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 82/85 (96%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VL+GGAEYYRITNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGL 85
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 82/85 (96%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VL+GGAEYYRITNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGL 85
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 82/85 (96%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRITNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRITNGL 85
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 80/85 (94%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+ E+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVTEVVLVGGAEYYRIINGL 85
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/85 (89%), Positives = 81/85 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/83 (90%), Positives = 80/83 (96%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GA CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITN 205
NLV AV+AE+VL+GGAEYYRITN
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITN 83
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/85 (89%), Positives = 81/85 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/85 (89%), Positives = 81/85 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/85 (89%), Positives = 81/85 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/85 (89%), Positives = 81/85 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/85 (89%), Positives = 81/85 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 80/85 (94%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 80/85 (94%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 80/85 (94%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI I
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 80/85 (94%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKT ALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 80/85 (94%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI I
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHI 60
Query: 183 NLVFAVIAEIVLVGGAEYYRITNGF 207
NLV AV+AE+VLVGGAEYYRI NG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGL 85
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 67/73 (91%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AVIAE+VL
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVVL 60
Query: 195 VGGAEYYRITNGF 207
VGGAEYYRI NG
Sbjct: 61 VGGAEYYRIINGL 73
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 72/86 (83%)
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
YQAYELIHARWA+L AAGF+ P AFNKFG+ CGPEA+W+KTGALLL+G+++ YFG
Sbjct: 31 LKSYQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFGAT 90
Query: 180 IPINLVFAVIAEIVLVGGAEYYRITN 205
+PINL AVI+E+ LVGG+EYYR TN
Sbjct: 91 VPINLAAAVISEVNLVGGSEYYRSTN 116
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 88/129 (68%), Gaps = 5/129 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR +LP+ L + +P+YLTGE PGDYG+D GLS P +F+ Y+ EL+HARW
Sbjct: 119 EWYGPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARW 176
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVI-A 190
AMLGA G + PE N + E VW+K GAL+L+G +++Y G K I + + A+ A
Sbjct: 177 AMLGALGCVFPEVINSYYNGNIAEPVWWKAGALVLNGQSIDYLGSDKFIHASSIIAIAGA 236
Query: 191 EIVLVGGAE 199
++VL+GGAE
Sbjct: 237 QVVLMGGAE 245
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 99/185 (53%), Gaps = 22/185 (11%)
Query: 29 AVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL 88
AV+TS G + ST P +K V+V E WYGPDR +L G
Sbjct: 1 AVQTSLVGTTTKSTL-------------PKGNKRVSVQAAVE----WYGPDRAKWL--GP 41
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
+P YLTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE
Sbjct: 42 YSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILA 101
Query: 149 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITN 205
K+G E+VWF+ GA + L+Y G I+ + VI++++L+G E YR+
Sbjct: 102 KYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNG 161
Query: 206 GFGGQ 210
G G+
Sbjct: 162 GPAGE 166
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 90/161 (55%), Gaps = 11/161 (6%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
+ + PA + A V +WYGPDR FL G + P YLTGE PGDYG+D
Sbjct: 10 RSSVRPATASSRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTA 67
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 68 GLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEG 127
Query: 172 TLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 206
LNY G NLV A +IA ++V++G AE YR G
Sbjct: 128 GLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGG 165
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 90/162 (55%), Gaps = 13/162 (8%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ P S+ V P +WYGPDR FL G ++P YLTGE PGDYG+D
Sbjct: 10 RSSVRPTVASRAARVVP--RAAIEWYGPDRPKFL--GPFSEGDVPSYLTGEFPGDYGWDT 65
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 66 AGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAE 125
Query: 171 NTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 206
LNY G NLV A +IA ++V++G AE YR G
Sbjct: 126 GGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGG 164
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 95/178 (53%), Gaps = 13/178 (7%)
Query: 35 PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94
P PS F+ +L S P KS ++ WYGPDR FL G +
Sbjct: 14 PNPFTPSDFRVYSLGSATHHQHPTKSSGSTAPQLSS--WPWYGPDRPKFL--GPFSEGDT 69
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+
Sbjct: 70 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 129
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 206
EAVWFK GA + LNY G NLV A +IA ++V++G AE YR G
Sbjct: 130 FGEAVWFKAGAQIFAEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGG 184
>gi|16930763|gb|AAL32041.1|AF439282_1 chl a/b-binding protein [Retama raetam]
Length = 99
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 78/100 (78%), Gaps = 7/100 (7%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFS---KKKAAPP 57
MASLAAS T A S+G EMLGNP+N+S R AP SNP+TFK VALFS KKKAAPP
Sbjct: 1 MASLAAS-TAAGSLGMSEMLGNPINLSGVTRL-APSPSNPATFKTVALFSNFNKKKAAPP 58
Query: 58 AKSKPVA--VSPVNEELAKWYGPDRRIFLPEGLLDRSEIP 95
K KP A VSP ++ELAKWYGPDRRIFLP+GLLDRSEIP
Sbjct: 59 PKQKPAAAAVSPADDELAKWYGPDRRIFLPDGLLDRSEIP 98
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 92/167 (55%), Gaps = 11/167 (6%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
VA + + + PA A V +WYGPDR FL G + P YLTGE PGD
Sbjct: 4 VAKSALRSSVRPATVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGD 61
Query: 106 YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 165
YG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA
Sbjct: 62 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGA 121
Query: 166 LLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 206
+ LNY G NLV A +IA ++V++G AE YR G
Sbjct: 122 QIFAEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGG 165
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 93/165 (56%), Gaps = 16/165 (9%)
Query: 53 KAAPPAKSKPVAVSP-----VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
K+A + +PV V+ V +WYGPDR FL G + P YLTGE PGDYG
Sbjct: 6 KSAARSSVRPVTVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYG 63
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 64 WDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQI 123
Query: 168 LDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 206
LNY G NLV A +IA ++V++G AE YR G
Sbjct: 124 FAEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGG 165
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ ++P +K K V + + +WYGPDR FL G P YL GE PGDYG+D
Sbjct: 16 RTVSSPKSKGKQVTRASI-----EWYGPDRPKFL--GPYSDGATPSYLKGEYPGDYGWDT 68
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GLS P+ FS+Y+ E+IH+RWA+LG G + PE K+G EAVWFK GA +
Sbjct: 69 AGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGAQIFSA 128
Query: 171 NTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGFGGQAS 212
+ LNY G ++ ++ V +++L+G AE YR+ G G+ +
Sbjct: 129 DGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYRVNGGPAGEIT 173
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 91/150 (60%), Gaps = 6/150 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 130 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 187
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 188 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 246
Query: 184 LVFAVIA-EIVLVGGAEYYRITNGFGGQAS 212
+ A++A ++VL+G AE YR+ G G+ S
Sbjct: 247 SILAILAFQVVLMGLAEAYRVNGGPLGEDS 276
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 91/150 (60%), Gaps = 6/150 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 370 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 427
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 428 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 486
Query: 184 LVFAVIA-EIVLVGGAEYYRITNGFGGQAS 212
+ A++A ++VL+G AE YR+ G G+ S
Sbjct: 487 SILAILAFQVVLMGLAEAYRVNGGPLGEDS 516
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 92/150 (61%), Gaps = 6/150 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G + P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 353 TPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 410
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 411 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 469
Query: 184 LVFAVIA-EIVLVGGAEYYRITNGFGGQAS 212
+ A++A ++VL+G AE YR+ G G+ S
Sbjct: 470 SILAILAFQVVLMGLAEAYRVNGGPLGEDS 499
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 92/150 (61%), Gaps = 6/150 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G + P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 593 TPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 650
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 651 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 709
Query: 184 LVFAVIA-EIVLVGGAEYYRITNGFGGQAS 212
+ A++A ++VL+G AE YR+ G G+ S
Sbjct: 710 SILAILAFQVVLMGLAEAYRVNGGPLGEDS 739
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 91/150 (60%), Gaps = 6/150 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 113 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 170
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 171 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 229
Query: 184 LVFAVIA-EIVLVGGAEYYRITNGFGGQAS 212
+ A++A ++VL+G AE YR+ G G+ S
Sbjct: 230 SILAILAFQVVLMGLAEAYRVNGGPLGEDS 259
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 90/162 (55%), Gaps = 19/162 (11%)
Query: 59 KSKPVAVSPVNEELAK--------WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+S V +PV A+ WYGPDR FL G + P YLTGE PGDYG+D
Sbjct: 10 RSTSVRPTPVGSRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDT 67
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 68 AGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAE 127
Query: 171 NTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 206
LNY G NLV A +IA ++V++G AE YR G
Sbjct: 128 GGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGG 166
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 5/146 (3%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
++ V+ +WYGPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y
Sbjct: 17 SIRNVSRNAVEWYGPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 74
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ ELIHARWAMLGA G + PE +K+G E+VWFK G+ + L+Y G + I
Sbjct: 75 REQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLIH 134
Query: 182 INLVFAVI-AEIVLVGGAEYYRITNG 206
+ A++ ++VL+G E YR+ G
Sbjct: 135 AQSILAILGCQVVLMGLIEAYRVNGG 160
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARW
Sbjct: 111 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 168
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA- 190
AMLGA G + PE +K+ E VWFK G+ + L+Y G I + A++A
Sbjct: 169 AMLGALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILAC 228
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
++VL+GGAE YR+ G G+
Sbjct: 229 QVVLMGGAEAYRVNGGPAGE 248
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARW
Sbjct: 127 EWYGPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARW 184
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA- 190
AMLGA G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 185 AMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 244
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+GGAE YR+ G G+
Sbjct: 245 QVILMGGAEAYRVNGGPAGE 264
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S+ P L S K KP + + + WYGP+R +FL G E P YLTG
Sbjct: 8 SSLAPRCLASTVKVEARRTVKPASKASTPDSF--WYGPERPLFL--GAF-TGEPPSYLTG 62
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G G EAVW
Sbjct: 63 EFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFG-EAVW 121
Query: 161 FKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGFGGQ 210
FK GA + L+Y G + N+V + +++L+G E YR+ G G+
Sbjct: 122 FKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGE 174
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 95/170 (55%), Gaps = 9/170 (5%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
+ V + + K A +K V+V E WYGPDR +L G +P YLTGE P
Sbjct: 6 QSVLVGATAKTALVKGNKRVSVQAAVE----WYGPDRAKWL--GPYSDGAVPSYLTGEFP 59
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE K+G E+VWF+
Sbjct: 60 GDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRA 119
Query: 164 GALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGFGGQ 210
GA + L+Y G I+ + VI++++L+G E YR+ G G+
Sbjct: 120 GAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGE 169
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARW
Sbjct: 114 EWYGPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARW 171
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA- 190
AMLGA G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 172 AMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 231
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+GGAE YR+ G G+
Sbjct: 232 QVILMGGAEAYRVNGGPAGE 251
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 86/143 (60%), Gaps = 6/143 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V ++YGPDR FL G +P YL GE PGDYG+D GLS P+ F++Y
Sbjct: 25 ARKQVTRASVEFYGPDRAKFL--GPFSEGAVPSYLKGEFPGDYGWDTAGLSADPETFARY 82
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
+ ELIH+RWA+LGA G + PE + GA + G AVWFK GA + + LNY G I
Sbjct: 83 REIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGLNYLGNPQLI 142
Query: 183 N---LVFAVIAEIVLVGGAEYYR 202
+ +V ++A+IVLVG AE YR
Sbjct: 143 HAQSIVATLLAQIVLVGTAEAYR 165
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 83/140 (59%), Gaps = 5/140 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARW
Sbjct: 127 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 184
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA- 190
AMLG G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 185 AMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 244
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+GGAE YR+ G G+
Sbjct: 245 QVILMGGAEAYRVNGGPAGE 264
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 31 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G I PE K G G EAVWFK GA + LNY G I + A +A
Sbjct: 89 AMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAF 147
Query: 191 EIVLVGGAEYYRITNG 206
++V++G AE YR G
Sbjct: 148 QVVVMGLAEAYRANGG 163
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 91/160 (56%), Gaps = 5/160 (3%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK GA +
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 170 GNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG 206
LNY G I+ ++ + ++VL+G AE YR G
Sbjct: 126 AGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGG 165
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 83/140 (59%), Gaps = 5/140 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARW
Sbjct: 126 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 183
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA- 190
AMLG G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 184 AMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 243
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+GGAE YR+ G G+
Sbjct: 244 QVILMGGAEAYRVNGGPAGE 263
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 93/172 (54%), Gaps = 7/172 (4%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF AL KA + P + +WYGP+R +L G + P YLTGE
Sbjct: 6 TFSRKALQVSAKATGKKGTSKTVAKPAPSGI-EWYGPNRAKWL--GPYSENATPAYLTGE 62
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K G G EAVWF
Sbjct: 63 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQFG-EAVWF 121
Query: 162 KTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGFGGQ 210
K GA + L+Y G + N+V + +++L+G E YR+ G G+
Sbjct: 122 KAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNGGPAGE 173
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 18/157 (11%)
Query: 52 KKAAPPAKSKPV--AVSPVNEE--LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
KK P K PV A PV+++ +AKWYGP+R+++LP GLL ++++P YL G + GDYG
Sbjct: 66 KKPTPATKRAPVKAARQPVDQKAAIAKWYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYG 125
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
+DP GL Y+ E++HARWAML G +IPEA N P VW +TG +
Sbjct: 126 FDPLGLGAD-GKVKDYRVAEILHARWAMLAVPGVVIPEALNI------PGGVWTETGKVF 178
Query: 168 LDGNTLNYFGKNIPINL--VFAVIAEIVLVGGAEYYR 202
LDG T G++ + ++A I ++VL+GGAE +R
Sbjct: 179 LDGET----GRDSILEFWPIYAAI-QVVLMGGAEKFR 210
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 91/160 (56%), Gaps = 5/160 (3%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK GA +
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 170 GNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG 206
LNY G I+ ++ + ++VL+G AE YR G
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGG 165
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 91/160 (56%), Gaps = 5/160 (3%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK GA +
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 170 GNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG 206
LNY G I+ ++ + ++VL+G AE YR G
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGG 165
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 88/135 (65%), Gaps = 7/135 (5%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR +LP+ L + +P+YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARW
Sbjct: 124 EWYGPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARW 181
Query: 134 AMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVI 189
AMLGA G I PE +G E VWFK GAL+L+ +++Y G ++ ++
Sbjct: 182 AMLGALGCIFPEILAMNYGVGL-EEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAA 240
Query: 190 AEIVLVGGAEYYRIT 204
A+++L+GGAE YR +
Sbjct: 241 AQVLLMGGAEAYRAS 255
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 85/138 (61%), Gaps = 8/138 (5%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGPDR FL ++ P YL GE PGDYG+D GLS P+ F++Y+ E
Sbjct: 29 VTRAAIEFYGPDRATFLGP----FTDTPSYLNGEFPGDYGWDTAGLSADPETFARYREIE 84
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---L 184
+IHARWAMLGA G + PE K G + G EAVWFK GA + + LNY G + ++ +
Sbjct: 85 VIHARWAMLGALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDGLNYLGNSSLVHAQSI 143
Query: 185 VFAVIAEIVLVGGAEYYR 202
+ + +++L+GGAE YR
Sbjct: 144 IATLACQVILMGGAEAYR 161
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 104/191 (54%), Gaps = 14/191 (7%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA
Sbjct: 53 DRVLYL--GPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 110
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 111 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 169
Query: 196 GGAEYYRITNG 206
G E YRI G
Sbjct: 170 GAVEGYRIAGG 180
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 81/136 (59%), Gaps = 5/136 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + PEYLTGE PGDYG+D GLS P F++Y+ ELIHARW
Sbjct: 27 EWYGPDRPKFL--GPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARW 84
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G ++PE K G VWFK GA + + LNY G I + A +A
Sbjct: 85 AMLGALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAF 144
Query: 191 EIVLVGGAEYYRITNG 206
++V++G AE +R G
Sbjct: 145 QVVVMGAAESFRFNGG 160
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 31 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G I PE K G G EAVWFK GA + LNY G I + A +A
Sbjct: 89 AMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAF 147
Query: 191 EIVLVGGAEYYRITNG 206
++V++G AE YR G
Sbjct: 148 QVVVMGLAEAYRANGG 163
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 17/181 (9%)
Query: 27 SSAVRTSAPG-----ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
+ V+ +AP A P+ K + KK K+ PV + +L+KWYGP R+
Sbjct: 17 AKTVKKTAPAKKAVPAKKPTPAKKAPVTVKKTVK---KAAPVKTTVKTADLSKWYGPQRK 73
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
++LP GLL ++IP YL G++ GDYG+DP GL +Y+ E+IHARWAML G
Sbjct: 74 LYLPSGLLTTADIPSYLDGKLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAMLAVPGI 132
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYY 201
+IPEA N G + W +TG + L+G+T FG + L AV IVL+GGAE +
Sbjct: 133 VIPEALNIAGGD------WRETGKVFLEGST-GRFGPA-ELWLGIAVAPLIVLMGGAEKF 184
Query: 202 R 202
R
Sbjct: 185 R 185
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 67/73 (91%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VL
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVL 60
Query: 195 VGGAEYYRITNGF 207
VGGAEYYRI NG
Sbjct: 61 VGGAEYYRIINGL 73
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 10/168 (5%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF + +KK +++ + +P N WYGPDR FL + P YLTGE
Sbjct: 8 TFIGSQVANKKMVTSMRRTQKKSSAPDN----VWYGPDRPQFLGP---FSGDCPSYLTGE 60
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+G E+VWF
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 162 KTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNG 206
K G+ + L+Y G + + + A++ +++L+G E YR+ G
Sbjct: 121 KAGSQIFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYRVNGG 168
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 83/139 (59%), Gaps = 12/139 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 28 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 85
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA- 190
AMLGA G I PE K G G EAVWFK G+ + LNY G NLV A +IA
Sbjct: 86 AMLGALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNE---NLVHAQSIIAT 141
Query: 191 ---EIVLVGGAEYYRITNG 206
++V++G AE YR G
Sbjct: 142 LAFQVVVMGLAEAYRANGG 160
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 10/168 (5%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF + SKK +++ +P + WYGPDR FL + P YLTGE
Sbjct: 8 TFVGTQVASKKMVTSMRRTQKKGSAPD----SVWYGPDRPQFLGP---FSGDTPSYLTGE 60
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+G E+VWF
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 162 KTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNG 206
K G+ + L+Y G + + A++ ++VL+G E YR+ G
Sbjct: 121 KAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNGG 168
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGD +DP GL+ PD F++ + E+ + R AM GF + GP W +
Sbjct: 179 PGDK-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFVQAVVT----GKGPIENWAE 233
Query: 163 TGALLLDGNTLNYFGKNIP 181
A N NY K +P
Sbjct: 234 HVADPFSVNAWNYATKFVP 252
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 88/161 (54%), Gaps = 6/161 (3%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ K+A + A V +WYGPDR FL G + P YLTGE GDYG+
Sbjct: 3 FALKQAVATKAAATRATRQVTRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFAGDYGW 60
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P F+KY+ E+IHARWAMLGA G I PE K G G EAVWFK GA +
Sbjct: 61 DTAGLSADPQTFAKYREIEVIHARWAMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIF 119
Query: 169 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
LNY G + + A +A +++L+G AE YR G
Sbjct: 120 QDGGLNYLGNENLVHAQSILATLAVQVLLMGAAESYRANGG 160
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 88/147 (59%), Gaps = 7/147 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
+V V+ +WYGPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y
Sbjct: 1 SVRNVSRNAIEWYGPDRPKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 58
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKN--I 180
+ ELIHARWAMLGA G + PE K+ G +CG E+VWFK G+ + L+Y G +
Sbjct: 59 REQELIHARWAMLGALGCVTPEILAKYAGVSCG-ESVWFKAGSQIFQEGGLDYLGNPSLV 117
Query: 181 PINLVFAVI-AEIVLVGGAEYYRITNG 206
+ A++ ++VL+G E YR+ G
Sbjct: 118 HAQSILAILGCQVVLMGLIEAYRVNGG 144
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
ALF KKK AK+ P + + AKWYGPDR +LP GLLD ++IP Y+ GE+ GDY
Sbjct: 32 ALFGKKKGT--AKATPKKAAAPADGAAKWYGPDRPKYLPTGLLDPADIPAYMNGELAGDY 89
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
GYDP GL K KY+ YE++H RWAMLG G ++PE G AVW+ +GA+
Sbjct: 90 GYDPLGLGNK-GGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAV 148
Query: 167 LLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
LLD TL + G P+ L AVI E+ + E YR
Sbjct: 149 LLDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENYR 185
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 153 QVILMGLVEGYRVNGGPAGE 172
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 153 QVILMGLVEGYRVNGGPAGE 172
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 36 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 92
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 93 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 152
Query: 184 -LVFAVIAEIVLVGGAEYYRITNGFG 208
+V ++ + ++G E YR G G
Sbjct: 153 SVVLTFLSTLAIMGAVEAYRYGGGVG 178
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 271 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 327
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 165
E+IHARWAMLGA G + PE G G AVW+K GA
Sbjct: 328 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGA 367
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 153 QVILMGLVEGYRVNGGPAGE 172
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCVTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 153 QVILMGLVEGYRVNGGPAGE 172
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
ALF KKK AK+ P + + AKWYGPDR +LP GLLD ++IP Y+ GE+ GDY
Sbjct: 39 ALFGKKKGT--AKATPKKAAAPADGAAKWYGPDRPKYLPTGLLDPADIPAYMNGELAGDY 96
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
GYDP GL K KY+ YE++H RWAMLG G ++PE G AVW+ +GA+
Sbjct: 97 GYDPLGLGNK-GGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAV 155
Query: 167 LLDGN-TLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
LLD + TL + G P+ L AVI E+ + E YR
Sbjct: 156 LLDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENYR 192
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + LNY G I N+V +
Sbjct: 94 AMLGALGIVTPELLQKNGVQFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAV 152
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
++VL+G E YR+ G G+
Sbjct: 153 QVVLLGLVEGYRVNGGPAGE 172
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 83/139 (59%), Gaps = 12/139 (8%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 11 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 68
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA- 190
AMLGA G I PE K G G EAVWFK G+ + LNY G NLV A +IA
Sbjct: 69 AMLGALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNE---NLVHAQSIIAT 124
Query: 191 ---EIVLVGGAEYYRITNG 206
++V++G AE YR G
Sbjct: 125 LAFQVVVMGLAEAYRANGG 143
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 83/135 (61%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++ + P YLTGE PGDYG+D GLS +P+ F+K + E+IHARWA
Sbjct: 52 WYGPDRVKYMGP---FSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVI-AE 191
MLG G I+PE + G G EAVWFK G+ + LNY G K I + AV+ A+
Sbjct: 109 MLGTVGCIVPELLERNGVKIG-EAVWFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAAQ 167
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI+ G
Sbjct: 168 VILMGAIEGYRISGG 182
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V A++YGPDR FL P YL GE PGDYG+D GLS P+ FS+Y
Sbjct: 17 ATRQVTRASAEFYGPDRVKFLGP---FSGATPSYLKGEYPGDYGWDTAGLSADPETFSRY 73
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
+ E+IHARWAMLGA G + PE K GA EAVWFK GA + L+Y G ++
Sbjct: 74 RELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLGNANLVH 133
Query: 184 ---LVFAVIAEIVLVGGAEYYRITNGFGGQAS 212
+V ++ +IVL+G E YR+ G G+ +
Sbjct: 134 AQSIVAVLLTQIVLMGLIEGYRVNGGPAGEIT 165
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 6/154 (3%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A S + +P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P
Sbjct: 374 AASGRKSAAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDP 430
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
++Y+ E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G
Sbjct: 431 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 490
Query: 178 KNIPIN---LVFAVIAEIVLVGGAEYYRITNGFG 208
I+ +V ++ + ++G E YR G G
Sbjct: 491 NPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVG 524
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+KWYGP+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL + R
Sbjct: 153 SKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGR 210
Query: 133 WAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYF 176
WAMLG G + PE N FG PE VWFKTGA +L+G +++Y
Sbjct: 211 WAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYL 254
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGF 207
G G AVW+K GA + + LNY G I+ +V ++ + ++G E YR G
Sbjct: 3 GVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGV 62
Query: 208 G 208
G
Sbjct: 63 G 63
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 6/154 (3%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A S + +P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P
Sbjct: 578 AASGRKSAAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDP 634
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
++Y+ E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G
Sbjct: 635 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 694
Query: 178 KNIPIN---LVFAVIAEIVLVGGAEYYRITNGFG 208
I+ +V ++ + ++G E YR G G
Sbjct: 695 NPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVG 728
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 125 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 181
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 182 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 241
Query: 184 -LVFAVIAEIVLVGGAEYYRITNGFG 208
+V ++ + ++G E YR G G
Sbjct: 242 SVVLTFLSTLAIMGAVEAYRYGGGVG 267
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 82/146 (56%), Gaps = 10/146 (6%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
SP+N K YGPDR +L G +PEYLTGE+PGDYG+D GL P ++Y+
Sbjct: 832 SPLN----KLYGPDRVKWL-GGF--TGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRV 884
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
++IH RWAMLG G PE N++G E VWFK GA + + LNY G+ I+
Sbjct: 885 AQVIHGRWAMLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQ 944
Query: 184 -LVFAVIAEIVLVGGAEYYRITNGFG 208
+V ++ +VL+G E YR G
Sbjct: 945 SVVLTFLSTLVLMGAVEAYRSAGSVG 970
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+KWYGP+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL + R
Sbjct: 357 SKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGR 414
Query: 133 WAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYF 176
WAMLG G + PE N FG PE VWFKTGA +L+G +++Y
Sbjct: 415 WAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYL 458
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL G +P YLTGE PGDYG+D GLS P+ F +++ E+IHARWA
Sbjct: 36 WYGPDRPKFL--GPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 191
MLGA G I PE K+ EAVWFK GA + LNY G ++ +V ++ +
Sbjct: 94 MLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVVQ 153
Query: 192 IVLVGGAEYYRITNGFG 208
++L+G E YR NG G
Sbjct: 154 VLLMGAVEIYR-ANGEG 169
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 88 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 144
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 145 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 204
Query: 184 -LVFAVIAEIVLVGGAEYYRITNGFG 208
+V ++ + ++G E YR G G
Sbjct: 205 SVVLTFLSTLAIMGAVEAYRYGGGVG 230
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 323 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 379
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAML + PE G G AVW+K GA + + LNY G I+
Sbjct: 380 AEVIHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 434
Query: 184 -LVFAVIAEIVLVGGAEYYRITNGFG 208
+V ++ + ++G E YR G G
Sbjct: 435 SVVLTFLSTLAIMGAVEAYRYGGGVG 460
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 85/149 (57%), Gaps = 9/149 (6%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP A S + WYGPDR +FL E P YLTGE PGDYG+D GLS P+ F
Sbjct: 29 KPAAKSSTPDSF--WYGPDRPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETF 83
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
+Y+ ELIHARWAMLGA G I PE +G G E+VWFK GA + L+Y G
Sbjct: 84 KRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-ESVWFKAGAQIFQEGGLDYLGNPS 142
Query: 180 -IPINLVFAVI-AEIVLVGGAEYYRITNG 206
+ + A++ +++L+G E YR+ G
Sbjct: 143 LVHAQSILAILGTQVILMGAIEGYRVNGG 171
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 37 WYGPDRPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AE 191
MLGA G + PE +K+G E+VWFK G+ + L+Y G + + A++ +
Sbjct: 94 MLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQ 153
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 154 VVLMGAIEAYRVNGG 168
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 104/191 (54%), Gaps = 15/191 (7%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + ELIH+RWAMLGA
Sbjct: 53 DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 168
Query: 196 GGAEYYRITNG 206
G E YRI G
Sbjct: 169 GAVEGYRIAGG 179
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 87/155 (56%), Gaps = 10/155 (6%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTGE PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIARNAVEWYGPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLS 64
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 174
P+ F Y+ ELIHARWAMLGA G + PE +K+ E+VWFK G+ + L+
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLD 124
Query: 175 YFGK--NIPINLVFAVI-AEIVLVGGAEYYRITNG 206
Y G + + A++ ++VL+G E YR+ G
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGG 159
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 34 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 90
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AE 191
MLGA G I PE +G G EAVWFK GA + L+Y G + + + A++ +
Sbjct: 91 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQ 149
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 150 VLLMGAIEGYRVNGG 164
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 93/159 (58%), Gaps = 11/159 (6%)
Query: 53 KAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFG 112
++A P K + V ++YGPDR FL +E P YL GE PGDYG+D G
Sbjct: 11 RSAVPTKGQ--GNKQVTRAAIEFYGPDRAGFLGP----FTESPSYLKGEFPGDYGWDTAG 64
Query: 113 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT 172
LS P+ F++Y+ E+IHARWAMLGA G + PE K G + G EAVWFK GA + +
Sbjct: 65 LSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDG 123
Query: 173 LNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGFG 208
LNY G ++ ++ + +++L+GGAE YR NG G
Sbjct: 124 LNYLGNPSLVHAQSIIATLACQVILMGGAEAYR-ANGEG 161
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
M + + +SS T P NPS+ + A F+ +K+A +K VA S + WYG
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLG
Sbjct: 53 PDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 194
A G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 168
Query: 195 VGGAEYYRITNG 206
+G E YRI G
Sbjct: 169 MGAVEGYRIAGG 180
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
M + + +SS T P NPS+ + A F+ +K+A +K VA S + WYG
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLG
Sbjct: 53 PDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 194
A G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 168
Query: 195 VGGAEYYRITNG 206
+G E YRI G
Sbjct: 169 MGAVEGYRIAGG 180
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 81/134 (60%), Gaps = 10/134 (7%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
E LAKWYGPDR+++LP GLL ++++P YL G + GDYG+DP GL +Y+ E+
Sbjct: 96 KEALAKWYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEV 154
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAML G +IPEA P VW +TG + LDG T F PI VFA
Sbjct: 155 IHARWAMLAIPGVVIPEALGL------PGGVWTETGKVFLDGETGRPFFLENPI--VFAA 206
Query: 189 IAEIVLVGGAEYYR 202
+ ++ L+ G E +R
Sbjct: 207 V-QVALMAGVEQFR 219
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 6/145 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P + L++WYGPDR +L G L ++P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 143 APAADNLSQWYGPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYRE 199
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 200 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 259
Query: 184 -LVFAVIAEIVLVGGAEYYRITNGF 207
+V ++ + ++G E YR G+
Sbjct: 260 SVVLTFLSTLAIMGAVEGYRYGGGW 284
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 6/145 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P + L++WYGPDR +L G L ++P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 143 APAADNLSQWYGPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYRE 199
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 200 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 259
Query: 184 -LVFAVIAEIVLVGGAEYYRITNGF 207
+V ++ + ++G E YR G+
Sbjct: 260 SVVLTFLSTLAIMGAVEGYRYGGGW 284
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 87/155 (56%), Gaps = 10/155 (6%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTG+ PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIVRNAVEWYGPDRAKWL--GPFSEGDVPSYLTGQFPGDYGWDTAGLS 64
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 174
P+ F Y+ ELIHARWAMLGA G + PE +K+ E+VWFK G+ + L+
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLD 124
Query: 175 YFGK--NIPINLVFAVI-AEIVLVGGAEYYRITNG 206
Y G + + A++ ++VL+G E YR+ G
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGG 159
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 104/191 (54%), Gaps = 15/191 (7%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA
Sbjct: 53 DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 168
Query: 196 GGAEYYRITNG 206
G E YRI G
Sbjct: 169 GAVEGYRIAGG 179
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 37 WYGPERPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AE 191
MLGA G + PE K+G E+VWFK G+ + L+Y G + + + A++ +
Sbjct: 94 MLGALGCVTPEILAKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSSLVHAQYILAILGCQ 153
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 154 VLLMGAIEAYRVNGG 168
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 87/155 (56%), Gaps = 10/155 (6%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTGE PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIARNAVEWYGPDRAKWL--GPFFEGDVPSYLTGEFPGDYGWDTAGLS 64
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 174
P+ F Y+ ELIHARWAMLGA G + PE +K+ E+VWFK G+ + L+
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLD 124
Query: 175 YFGK--NIPINLVFAVI-AEIVLVGGAEYYRITNG 206
Y G + + A++ ++VL+G E YR+ G
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGG 159
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 41 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 97
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AE 191
MLGA G I PE +G G EAVWFK GA + L+Y G + + A++ +
Sbjct: 98 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQ 156
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 157 VLLMGAIEGYRVNGG 171
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 41 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 97
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVI-AE 191
MLGA G I PE +G G EAVWFK GA + L+Y G + + A++ +
Sbjct: 98 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQ 156
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 157 VLLMGAIEGYRVNGG 171
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 39 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 96
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G I PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 97 AMLGALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 155
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 156 QVILMGLVEGYRVNGGPAGE 175
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 6/142 (4%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGPDR +L + P YLTGE PGDYG+D GLS P+ F+ Y+ E
Sbjct: 27 VTRAAVEFYGPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELE 83
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 185
LIHARWAMLGA G + PE +K+ EAVWFK GA + L+Y G + + +
Sbjct: 84 LIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHAQSI 143
Query: 186 FAVI-AEIVLVGGAEYYRITNG 206
A++ ++VL+GGAE +R+ G
Sbjct: 144 LAILGCQVVLMGGAEAFRVNGG 165
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 27 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARW 84
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + LNY G I N+V +
Sbjct: 85 AMLGALGIVTPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAV 143
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 144 QVILLGLVEGYRVNGGPAGE 163
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 47 ALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
AL K +AA A +K +P +WYGPDR +L + P YLTGE PGD
Sbjct: 10 ALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGP---FSTNTPAYLTGEFPGD 66
Query: 106 YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 165
YG+D GLS P+ F KY+ E+IHARWA+LGA G + PE + + E VWFK GA
Sbjct: 67 YGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA 126
Query: 166 LLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGFGGQ 210
+ L+Y G I N+V + ++VL+G E YR+ G G+
Sbjct: 127 QIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGE 174
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G +P YLTGE PGDYG+D GLS P+ F KY+ ELIHAR+
Sbjct: 30 EWYGPNRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARF 87
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 190
AMLGA G + PE K+G E+VWF+ GA + L+Y G I+ + VI+
Sbjct: 88 AMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAIVIS 147
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
++VL+G E YR+ G G+
Sbjct: 148 QVVLMGLVEGYRVNGGPAGE 167
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YGP+R +FL GL E P YL GE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 40 FYGPNRPLFL-GGL--SGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWA 96
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 191
+LGA G ++PE + G + VWFK GA + LNY G ++ +V ++ +
Sbjct: 97 LLGALGCVVPELLARNGVAMPADGVWFKVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQ 156
Query: 192 IVLVGGAEYYRITNG 206
+VL+G AE YRI G
Sbjct: 157 LVLMGWAEGYRINGG 171
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S P + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKATTKKVSVPASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 185
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
E+L+ WYGP+R++FL G L PE+L GE+PGDYG+D GL+ +P +Y+ E
Sbjct: 97 TGEKLSDWYGPNRKLFL--GPLSDGA-PEHLKGELPGDYGFDVLGLATQPTRLERYRQGE 153
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---L 184
+I+ RWAMLG G I+PE + PE VWFKTGA + LNY G I+ +
Sbjct: 154 IINGRWAMLGIVGCIVPELLARNYGVPFPEPVWFKTGATVFSEEGLNYLGNPSLIHAKSI 213
Query: 185 VFAVIAEIVLVGGAEYYRITNG 206
++ EI+ VG AE +R++ G
Sbjct: 214 AAILVTEILFVGAAEAFRVSGG 235
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 97/184 (52%), Gaps = 27/184 (14%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEEL--------------------AKWYGPDRRIFLP 85
+A S ++P KPV +SP ++EL + WYGPDR +L
Sbjct: 1 MAASSMALSSPTLAGKPVKLSPSSQELGASRFTMRKSATTKKVASSGSPWYGPDRVKYLG 60
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 61 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 146 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 202
++ G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR
Sbjct: 118 LLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYR 176
Query: 203 ITNG 206
I G
Sbjct: 177 IAGG 180
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 39 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 96
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 97 AMLGALGCLTPELLAKNGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAC 155
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 156 QVILMGLVEGYRVNGGPAGE 175
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 96/170 (56%), Gaps = 15/170 (8%)
Query: 40 PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
PS+ A + +K A AK KP A + WYGPDR ++L G L E P YLT
Sbjct: 17 PSSLFGEARVTMRKTA--AKPKPAASG------SPWYGPDRVLYL--GPLS-GEPPSYLT 65
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAV
Sbjct: 66 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAV 124
Query: 160 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
WFK G+ + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 125 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG 174
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 83/139 (59%), Gaps = 6/139 (4%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGPDR +L G +P YL GE PGDYG+D GLS P+ F++Y+ E
Sbjct: 24 VTRASVEFYGPDRAKWL--GPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREIE 81
Query: 128 LIHARWAMLGAAGFIIPEAFNKFG-ANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN--- 183
+IHARWAMLGA G + PE G A+ G AVWFK GA + + LNY G I+
Sbjct: 82 VIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQS 141
Query: 184 LVFAVIAEIVLVGGAEYYR 202
+V ++ ++V++G AE YR
Sbjct: 142 IVAVLLTQLVIMGAAEAYR 160
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
L+ WYGP+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH
Sbjct: 238 LSAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHG 295
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAV 188
RWAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ L+ +
Sbjct: 296 RWAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAIL 355
Query: 189 IAEIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR N GQ
Sbjct: 356 ATQVLLMGAVEAYRAGNTAPGQ 377
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L G + P YL GE+PGDYG+D GL P +Y+ ELIH RWAMLG
Sbjct: 1 PDRSKWL--GPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLG 58
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 194
A G + PE ++ E VWFK GA + L+Y G ++ ++ + +++L
Sbjct: 59 ALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLL 118
Query: 195 VGGAEYYRITNGFG 208
+G AE YR NG G
Sbjct: 119 MGAAEAYRTGNGLG 132
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
L+ WYGP+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH
Sbjct: 465 LSAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHG 522
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAV 188
RWAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ L+ +
Sbjct: 523 RWAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAIL 582
Query: 189 IAEIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR N GQ
Sbjct: 583 ATQVLLMGAVEAYRAGNTAPGQ 604
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 17/167 (10%)
Query: 45 PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPG 104
PVA+F+ + PA L++WYGPDR +L G + P YL GE+PG
Sbjct: 207 PVAMFAAGGSKAPAG------------LSQWYGPDRSKWL--GPYSDALTPPYLNGELPG 252
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GL P +Y+ ELIH RWAMLGA G + PE ++ E VWFK G
Sbjct: 253 DYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAG 312
Query: 165 ALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGFG 208
A + L+Y G ++ ++ + +++L+G AE YR NG G
Sbjct: 313 AQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNGLG 359
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
+P YLTGE+PGDYG+D GL P +Y+ ELIH RWAMLGA G +PE N+F
Sbjct: 1 VPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGV 60
Query: 154 CGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGFGGQ 210
E +WFK GA + LNYFG+ I+ L+ + +++L+G E YR N GQ
Sbjct: 61 QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 120
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 105/191 (54%), Gaps = 20/191 (10%)
Query: 20 LGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
L +P V TSA NPS+ + A F+ +K+A +K VA S + WYGP
Sbjct: 8 LSSPTLTGKPVETSA----NPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYGP 55
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA
Sbjct: 56 DRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGA 112
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L+
Sbjct: 113 LGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILM 171
Query: 196 GGAEYYRITNG 206
G E YRI G
Sbjct: 172 GAVEGYRIAGG 182
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V+ +WYGPDR ++L G +P YL GE PGDYG+D GLS P+ F Y+ E
Sbjct: 1 VSRNAVEWYGPDRALWL--GPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQE 58
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLV 185
LIHARWAMLGA G + PE +K+ E+VWFK G+ + L+Y G + +
Sbjct: 59 LIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSI 118
Query: 186 FAVI-AEIVLVGGAEYYRITNG 206
A++ ++VL+G E YR+ G
Sbjct: 119 LAILGCQVVLMGLIEAYRVNGG 140
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 87/152 (57%), Gaps = 11/152 (7%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKPKPAASSG-----SPWYGADRVLYL--GPLSGREPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLG G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 87 ETFAKNRELEVIHSRWAMLGGLGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 145
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
I + A+ A ++VL+G E YRI G
Sbjct: 146 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGG 177
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 95/180 (52%), Gaps = 23/180 (12%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAK----------------WYGPDRRIFLPEGLL 89
+A S ++P K V +SP +E+ + WYGPDR +L
Sbjct: 1 MAASSMALSSPSLAGKAVKLSPSTQEVGRVSMRKTVTKQASSGSPWYGPDRVKYLGP--- 57
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 58 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 117
Query: 150 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
G G EAVWFK G+L+ L+Y G I + A+ A +++L+G E YRI G
Sbjct: 118 NGVKFG-EAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 176
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 86/152 (56%), Gaps = 12/152 (7%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP A S + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPAAASG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 149
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
I + A+ A +++L+G E YRI G
Sbjct: 150 NPSLIHAQSILAIWACQVILMGAVEGYRIAGG 181
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 85/142 (59%), Gaps = 8/142 (5%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI----NLVFAVI 189
AMLGA G + P+ +K G EA+WFK GA + L+Y G N+ + N+V +
Sbjct: 94 AMLGALGCVTPKLLSKNGVQF-SEALWFKAGAQIFQEGGLDYLG-NLSLVHAQNIVATLA 151
Query: 190 AEIVLVGGAEYYRITNGFGGQA 211
+++L+G E YR+ G G+
Sbjct: 152 CQVILMGLVEGYRVNGGPAGEG 173
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KAA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKAATKKVSVSASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 88/152 (57%), Gaps = 10/152 (6%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 44 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 97
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 98 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 156
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YRI G
Sbjct: 157 NPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 89/165 (53%), Gaps = 16/165 (9%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFL----PEGLLDRSEIPEYLTGEVPG 104
F+ K+A + A V ++YGPDR FL PE +YLTGE PG
Sbjct: 3 FALKQAVATKAAATRATRQVTRAAVEFYGPDRAKFLGPFTPE--------SDYLTGEFPG 54
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P FS+Y+ E+IHARWAMLGA G I PE K G G EAVWFK G
Sbjct: 55 DYGWDTAGLSADPQTFSRYREVEVIHARWAMLGALGCITPELLAKNGVPFG-EAVWFKAG 113
Query: 165 ALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
A + LNY G + + A +A +++L+G AE YR G
Sbjct: 114 AQIFQDGGLNYLGNENLVHAQSILATLAVQVILMGAAEAYRANGG 158
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 89/163 (54%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KAA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKAATKKVSVSASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 LLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 185
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 7/146 (4%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
NE+L +YGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ EL
Sbjct: 40 NEKLGAFYGPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELEL 96
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 186
IHARWAMLGA G + PE K G E VWFK GA + L+Y G I +
Sbjct: 97 IHARWAMLGALGCVTPELLAKNGTPI-AEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSIL 155
Query: 187 AVIA-EIVLVGGAEYYRITNGFGGQA 211
A +A +++L+G E YR+ G G+
Sbjct: 156 ATLAVQVILMGAIEGYRVNGGPAGEG 181
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 87/152 (57%), Gaps = 10/152 (6%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 153
Query: 178 K--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YRI G
Sbjct: 154 NPSLVHAQSILAIWACQVILMGAVEGYRIAGG 185
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G L E P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 42 WYGPDRPKYL--GWLS-GETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWA 98
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 191
MLGA G I PE G E VWFK GA + LNY G ++ ++ ++ +
Sbjct: 99 MLGALGCITPELLANNGTPIA-EPVWFKAGAQIFQDGGLNYLGNENLVHAQSIIVTLLVQ 157
Query: 192 IVLVGGAEYYRITNGFGGQ 210
++L+G E YR+ G G+
Sbjct: 158 VILMGTVEGYRVNGGPAGE 176
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 87/152 (57%), Gaps = 10/152 (6%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 153
Query: 178 K--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YRI G
Sbjct: 154 NPSLVHAQSILAIWACQVILMGAVEGYRIAGG 185
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 24 LNVSSAVRTSAPGASNPSTFKP------VALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
+ SS TS A P P VA F+ +K A +K VA S + WYG
Sbjct: 1 MAASSMALTSPALAGKPVKLTPSSQELGVAKFTMRKGA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG
Sbjct: 53 PDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 194
A G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 168
Query: 195 VGGAEYYRITNG 206
+G E YRI G
Sbjct: 169 MGAVEGYRIAGG 180
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
K V S+K A A+ + +A + + WYG DR ++L G S P YLTG
Sbjct: 16 QQLKSVNELSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYL--GPFSGSP-PSYLTG 72
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ F+K + ELIHARWAMLGA G + PE K G G EAVW
Sbjct: 73 EFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKFG-EAVW 131
Query: 161 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
FK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 132 FKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVAGG 180
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 97/184 (52%), Gaps = 27/184 (14%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEEL--------------------AKWYGPDRRIFLP 85
+A S ++P KPV ++P ++EL + WYGPDR +L
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLG 60
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 61 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 146 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 202
++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 118 LLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 176
Query: 203 ITNG 206
I G
Sbjct: 177 IAGG 180
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 153 QVILMGLIEGYRVNGGPAGE 172
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 153 QVILMGLIEGYRVNGGPAGE 172
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 96/184 (52%), Gaps = 27/184 (14%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLP 85
+A S ++P KPV ++P ++EL WYGPDR +L
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKAATTKKVASSGSPWYGPDRVKYLG 60
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 61 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 146 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 202
++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 118 LLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 176
Query: 203 ITNG 206
I G
Sbjct: 177 IAGG 180
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 89/163 (54%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 39 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 88
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 89 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 147
Query: 167 LLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 148 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 190
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 87/152 (57%), Gaps = 10/152 (6%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 153
Query: 178 K--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YRI G
Sbjct: 154 NPSLVHAQSILAIWACQVILMGAVEGYRIAGG 185
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 39 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 88
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 89 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 147
Query: 167 LLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 148 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 190
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 112 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 171 VILMGAVEGYRIAGG 185
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 153 QVILMGLIEGYRVNGGPAGE 172
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 86/151 (56%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE F + G G EAVWFK G+ + L+Y G
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 149
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 153 QVILMGLIEGYRVNGGPAGE 172
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 166 VVLMGAVEGYRIAGG 180
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 92
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 93 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 151
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 152 QVILMGLIEGYRVNGGPAGE 171
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 60 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 116
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 117 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 175
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 176 VILMGAVEGYRIAGG 190
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 185
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 89/163 (54%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA + + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKLTASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P++F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 86/151 (56%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
KSKPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 38 KSKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 88
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 89 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 147
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YRI G
Sbjct: 148 PSLVHAQSILAIWATQVILMGAVEGYRIAGG 178
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 89/152 (58%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + ELIH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 87/145 (60%), Gaps = 7/145 (4%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
NE+L+ +YGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ EL
Sbjct: 46 NEKLSAFYGPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELEL 102
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVF 186
IHARWAMLGA G I PE K G E VWFK GA + L+Y G + +
Sbjct: 103 IHARWAMLGALGCITPELLAKNGTPI-VEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSIL 161
Query: 187 AVIA-EIVLVGGAEYYRITNGFGGQ 210
A +A +++L+G E YR+ G G+
Sbjct: 162 ATLAVQVILMGAIEGYRVNGGPAGE 186
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K VA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 40 KSVAKSKAVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 96
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
+K + E+IH RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 97 AKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPN 155
Query: 180 -IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YRI G
Sbjct: 156 LVHAQSILAIWATQVILMGAVEGYRIAGG 184
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S +K A P K P SP WYGPDR +L E P YLTGE PGDYG+D
Sbjct: 21 SMRKTAAPKKVAPSG-SP-------WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWD 69
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 70 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFS 128
Query: 170 GNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
L+Y G + + A+ A +++L+G E YRI G
Sbjct: 129 EGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 168
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 164 VVLMGAVEGYRIAGG 178
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 16/172 (9%)
Query: 39 NPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
NPS+ + A F+ +K+A +K VA S + WYGPDR +L E P Y
Sbjct: 24 NPSSQELGAARFTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGESPSY 72
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE ++ G G E
Sbjct: 73 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-E 131
Query: 158 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
AVWFK G+ + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 132 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 183
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNGFGGQAS 212
+VL+G E YRI G G+ +
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVT 184
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 171 VILMGAVEGYRIAGG 185
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 59 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 115
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 116 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 174
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 175 VILMGAVEGYRIAGG 189
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 58 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 114
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 115 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 173
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 174 VILMGAVEGYRIAGG 188
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNGFGGQAS 212
+VL+G E YRI G G+ +
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVT 184
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+ WYGPDR +FL P YL GE PGDYG+D GLS P+ F++ +A ELIH R
Sbjct: 46 SMWYGPDRPLFLGP---FSGNTPSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGR 102
Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA 190
WAMLGA G I PE K+ E VWFK GA + L+Y G I + AV A
Sbjct: 103 WAMLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWA 162
Query: 191 -EIVLVGGAEYYRITNGFGG 209
++VL+G E YR TNG G
Sbjct: 163 VQVVLMGAVEAYR-TNGLPG 181
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 171 VILMGAVEGYRIAGG 185
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 192 IVLVGGAEYYRITNGFGGQAS 212
+VL+G E YRI G G+ +
Sbjct: 163 VVLMGAVEGYRIAGGPLGEVT 183
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 83/144 (57%), Gaps = 7/144 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
S V+ + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 46 SVVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 102
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 103 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQ 161
Query: 184 LVFAVIA-EIVLVGGAEYYRITNG 206
+ A+ A +++L+G E YRI G
Sbjct: 162 SILAIWACQVILMGAVEGYRIAGG 185
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 89/152 (58%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L R E P YLTG+ PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGADRVLYL--GPLSR-EPPSYLTGDFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ FSK + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 K--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 18 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 67
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 68 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 126
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 127 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 169
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 83/144 (57%), Gaps = 7/144 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
S V+ + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 43 SVVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 99
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 100 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQ 158
Query: 184 LVFAVIA-EIVLVGGAEYYRITNG 206
+ A+ A +++L+G E YRI G
Sbjct: 159 SILAIWACQVILMGAVEGYRIAGG 182
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 167 VILMGAVEGYRVAGG 181
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 LLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 185
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 171 VILMGAVEGYRIAGG 185
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 98/191 (51%), Gaps = 16/191 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 167
Query: 196 GGAEYYRITNG 206
G E YR+ G
Sbjct: 168 GAVEGYRVAGG 178
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V +WYGP+R FL G S P YL GE PGDYG+D GLS P+ F++Y
Sbjct: 18 ATRQVTRASVEWYGPNRPQFL--GPFSGS-TPSYLKGEYPGDYGWDTAGLSADPETFARY 74
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
+ E+IHARWAMLGA G + PE G EAVWFK GA + L+Y G I+
Sbjct: 75 RELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYLGNPSLIH 134
Query: 184 ---LVFAVIAEIVLVGGAEYYRITNGFGGQ 210
+V ++ ++ L+G E YR+ G G+
Sbjct: 135 AQSIVAVLLTQLTLMGLIEGYRVNGGPAGE 164
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 96 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
E L PG+ +DP GL+ PD FS+ + EL + R AM+ GF + K G
Sbjct: 164 EGLDALYPGE-AFDPLGLADDPDTFSELKVKELKNGRLAMVSMFGFFVQGIVTKKG 218
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 98/191 (51%), Gaps = 16/191 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 167
Query: 196 GGAEYYRITNG 206
G E YR+ G
Sbjct: 168 GAVEGYRVAGG 178
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 165 VILMGAVEGYRIAGG 179
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVMYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ A P + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 37 RKTAGKPAASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 93
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 94 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 180 -IPINLVFAVIA-EIVLVGGAEYYRITNG 206
I + A+ A ++VL+G E YRI G
Sbjct: 153 LIHAQSILAIWATQVVLMGAVEGYRIAGG 181
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNGFGGQAS 212
++L+G E YRI G G+ +
Sbjct: 164 VILMGAVEGYRIAGGPLGEVT 184
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNGFGGQAS 212
++L+G E YRI G G+ +
Sbjct: 164 VILMGAVEGYRIAGGPLGEVT 184
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 54 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 110
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 111 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQ 169
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 170 VILMGAVEGYRIAGG 184
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGAIEGYRVAGG 179
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 85/150 (56%), Gaps = 13/150 (8%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNP 149
Query: 180 --IPINLVFAVIA-EIVLVGGAEYYRITNG 206
I + A+ A +++L+G E YR+ G
Sbjct: 150 SLIHAQSILAIWACQVILMGAVEGYRVAGG 179
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L++ G I + A+ A +
Sbjct: 112 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQ 170
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 171 VILMGAVEGYRIAGG 185
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
+E + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F++ + E+
Sbjct: 48 SESPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 104
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 186
IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G I +
Sbjct: 105 IHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIL 163
Query: 187 AVIA-EIVLVGGAEYYRITNG 206
A+ A +++L+G E YRI G
Sbjct: 164 AIWASQVILMGAVEGYRIAGG 184
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 88/152 (57%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K VA S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVASS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 K--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YRI G
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 86/152 (56%), Gaps = 14/152 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK K V+ SP WYGPDR +L E P YL+GE PGDYG+D GLS P
Sbjct: 6 AKPKTVSSSP-------WYGPDRVKYLGP---FSGEAPSYLSGEFPGDYGWDTAGLSADP 55
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 56 ETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLG 114
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YRI G
Sbjct: 115 NPSLVHAQSILAIWATQVILMGAVEGYRIAGG 146
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 89/152 (58%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ S + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSS------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IHARWA
Sbjct: 48 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCIFPELLSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 164 VVLMGFIEGYRVGGG 178
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 7/146 (4%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+E L+++YGP+R ++L G L S P YLTGE PGDYG+D GLS P+ F +Y+ E
Sbjct: 46 TSERLSQFYGPERALWL--GPLSGSA-PSYLTGEFPGDYGWDSAGLSSDPETFKRYRELE 102
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLV 185
LIHARWAMLGA G + PE K G E VWFK GA + L+Y G + +
Sbjct: 103 LIHARWAMLGALGCVTPELLAKNGTPIA-EPVWFKAGAQIFQEGGLDYLGNPGLVHAQSI 161
Query: 186 FAVIA-EIVLVGGAEYYRITNGFGGQ 210
A +A +++L+G E +R+ G G+
Sbjct: 162 LATLACQVILMGAIEGFRVNGGPAGE 187
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNGFGGQAS 212
++L+G E YRI G G+ +
Sbjct: 164 VILMGAVEGYRIAGGPLGEVT 184
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 89/152 (58%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 6 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 56
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + ELIH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 57 ETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 115
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 116 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 147
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +L + P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 40 WYGPERAKWLGP---FSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWA 96
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G I PE K G G EAVWFK GA + LNY G + I + A +A +
Sbjct: 97 MLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQ 155
Query: 192 IVLVGGAEYYRITNGFGGQ 210
++L+G E YR+ G G+
Sbjct: 156 VILMGLVEGYRVNGGPAGE 174
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 164 VVLMGAVEGYRIAGG 178
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 97/186 (52%), Gaps = 16/186 (8%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ ++S P A F + +K AA P KP A + WYG DR ++
Sbjct: 1 MAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGADRVLY 51
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G +
Sbjct: 52 L--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 108
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 200
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 109 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 167
Query: 201 YRITNG 206
YR+ G
Sbjct: 168 YRVAGG 173
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V + + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 39 AAGKVADSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIH 154
Query: 182 INLVFAVIA-EIVLVGGAEYYRITNG 206
+ A+ A ++VL+G E YRI G
Sbjct: 155 AQSILAIWATQVVLMGAVEGYRIAGG 180
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 85/151 (56%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KP + S + WYGPDR +L E P YLTGE P DYG+D GLS P+
Sbjct: 41 KAKPASSS------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPSDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE F + G G EAVWFK GA + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 85/144 (59%), Gaps = 9/144 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YGPDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWA
Sbjct: 45 FYGPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWA 100
Query: 135 MLGAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 190
MLG G +PEA K+ G N G E+VWFK G + L+Y G ++ ++ V
Sbjct: 101 MLGTLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFI 159
Query: 191 EIVLVGGAEYYRITNGFGGQASPR 214
+ +L+G E YR+ G G+A +
Sbjct: 160 QALLMGLVEGYRVGGGPLGEAGDK 183
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
++WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R
Sbjct: 47 SQWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 103
Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA 190
WAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 104 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162
Query: 191 -EIVLVGGAEYYRITNG 206
+++L+G E YRI G
Sbjct: 163 VQVILMGAVEGYRIAGG 179
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 85/144 (59%), Gaps = 9/144 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YGPDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWA
Sbjct: 45 FYGPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWA 100
Query: 135 MLGAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 190
MLG G +PEA K+ G N G E+VWFK G + L+Y G ++ ++ V
Sbjct: 101 MLGTLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFI 159
Query: 191 EIVLVGGAEYYRITNGFGGQASPR 214
+ +L+G E YR+ G G+A +
Sbjct: 160 QALLMGLVEGYRVGGGPLGEAGDK 183
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 85/150 (56%), Gaps = 13/150 (8%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 180 --IPINLVFAVIA-EIVLVGGAEYYRITNG 206
I + A+ A +++L+G E YR+ G
Sbjct: 150 SLIHAQSILAIWACQVILMGAVEGYRVAGG 179
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 167 VILMGAVEGYRIAGG 181
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 73 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 132 VILMGAVEGYRIAGG 146
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 167 VILMGAVEGYRIAGG 181
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 166 VILMGAVEGYRIAGG 180
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 85/150 (56%), Gaps = 13/150 (8%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 180 --IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YR+ G
Sbjct: 150 SLVHAQSILAIWACQVILMGAVEGYRVAGG 179
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 SKAKPVSSGSL------WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YR+ G
Sbjct: 149 NPSLVHAQSILAIWACQVILMGAVEGYRVAGG 180
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGIVFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 86/160 (53%), Gaps = 14/160 (8%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S + K +P SP WYGPDR +L E P YLTGE PGDYG+D
Sbjct: 43 SNRPRTTAGKLRPATSSP-------WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWD 92
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P+ F+K + E+IH+RWAMLGA G I PE + G G EAVWFK G+ +
Sbjct: 93 TAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGVKFG-EAVWFKAGSQIFS 151
Query: 170 GNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 152 EGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIAGG 191
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 86/152 (56%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 SKAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 150 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 46 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 103 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 161
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 162 VVLMGAVEGYRIAGG 176
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 164 VVLMGAVEGYRIAGG 178
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 86/152 (56%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 SKAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 88/152 (57%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 36 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 87 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 145
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 146 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 177
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 162
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 163 VVLMGAVEGYRIAGG 177
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGAVEGYRVAGG 180
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 73 MLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 132 VILMGAVEGYRIAGG 146
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P S F + +K A P KP A + WYG
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTAGKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLM 167
Query: 196 GGAEYYRITNG 206
G E YRI G
Sbjct: 168 GAVEGYRIAGG 178
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 85/150 (56%), Gaps = 13/150 (8%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 180 --IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YR+ G
Sbjct: 150 SLVHAQSILAIWACQVILMGAVEGYRVAGG 179
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 167 VVLMGAVEGYRIAGG 181
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 81/141 (57%), Gaps = 7/141 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLSP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNGFGGQAS 212
++L+G E YR+ G G+ +
Sbjct: 164 VILMGAVEGYRVAGGPLGEVT 184
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 167 VVLMGAVEGYRIAGG 181
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 167 VVLMGAVEGYRIAGG 181
>gi|116788195|gb|ABK24790.1| unknown [Picea sitchensis]
Length = 151
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 18 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 74
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 75 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQ 133
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 134 VILMGAIEGYRVAGG 148
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 162
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 163 VILMGAVEGYRIAGG 177
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 166 VILMGAVEGYRIAGG 180
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 56 WYGPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 112
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 113 MLGALGCVFPELLSKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQ 171
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 172 VILMGAVEGYRIAGG 186
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 17 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 73
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +
Sbjct: 74 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 132
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 133 VILMGAIEGYRVAGG 147
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGAVEGYRVAGG 180
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
KPV S+K A A+ + +A + WYG DR ++L G S P YL+G
Sbjct: 15 QQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYL--GPFSGSP-PSYLSG 71
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G G EAVW
Sbjct: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVW 130
Query: 161 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
FK G+ + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 131 FKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 179
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQ 162
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 163 VILMGAVEGYRIAGG 177
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P +LTGE PGDY
Sbjct: 37 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSHLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G + + A+ A +++L+G E YRI G
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQ 164
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 165 VILMGAVEGYRIAGG 179
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 87/152 (57%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKPKPAASG------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 85 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 143
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
I + A+ A ++VL+G E YRI G
Sbjct: 144 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGG 175
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 167 VILMGAVEGYRIAGG 181
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 167 VVLMGAIEGYRVAGG 181
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 86 WYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 142
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 143 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 201
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 202 VVLMGAIEGYRVAGG 216
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 82/138 (59%), Gaps = 13/138 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA-- 190
MLGA G + PE + G G EAVWFK G+ + L+Y G NLV A ++A
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIW 162
Query: 191 --EIVLVGGAEYYRITNG 206
++VL+G E YRI G
Sbjct: 163 ACQVVLMGAVEGYRIAGG 180
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 92/170 (54%), Gaps = 10/170 (5%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
S KPV S+K + A+ + V ++ + WYG DR +L E P YLT
Sbjct: 16 SLLKPVNELSRKVGSSEARVTMRRTVKSTSDSI--WYGADRPKYLGP---FSGETPSYLT 70
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAV
Sbjct: 71 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAV 129
Query: 160 WFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
WFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 130 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAGG 179
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 45 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 160
Query: 192 IVLVGGAEYYRITNGFGGQAS 212
++L+G E YRI G G+ +
Sbjct: 161 VLLMGAVEGYRIAGGPLGEVT 181
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 163 VILMGAVEGYRIAGG 177
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 81/140 (57%), Gaps = 6/140 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 92
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G PE K G G EAVWFK GA + L+Y G + N+V
Sbjct: 93 AMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAV 151
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 152 QVILMGLIEGYRVNGGPAGE 171
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 167 VILMGAIEGYRVAGG 181
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 93/170 (54%), Gaps = 12/170 (7%)
Query: 43 FKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ S+K A A+ K V+ S ++ + WYG DR FL E P YL
Sbjct: 19 LKPVSELSRKVNAGEARVTMRKTVSKSSGSDSI--WYGADRPKFLGP---FSGETPSYLN 73
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAV
Sbjct: 74 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAV 132
Query: 160 WFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
WFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 133 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 182
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 104/206 (50%), Gaps = 33/206 (16%)
Query: 4 LAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPV 63
+AAS+ SI + M G P+ V S F + +K AA P V
Sbjct: 1 MAASTM---SISSTAMAGTPIKVGS--------------FGEGRITMRKTAAKPK----V 39
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A S + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 40 AASG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 91
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 92 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIH 150
Query: 182 INLVFAVIA-EIVLVGGAEYYRITNG 206
+ A+ A ++VL+G E YRI G
Sbjct: 151 AQSILAIWAVQVVLMGAVEGYRIAGG 176
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 91/161 (56%), Gaps = 15/161 (9%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +KAA +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKAA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 169 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
L+Y G + + A+ A +++L+G E YRI G
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGG 153
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGAVEGYRVAGG 180
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 167 VILMGAVEGYRVAGG 181
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 105/209 (50%), Gaps = 34/209 (16%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
M + A S+PA M G P+ VS A + F + +K AA P
Sbjct: 1 MTATMALSSPA-------MAGTPVKVSRA-----------TPFGEGRITMRKTAAKPK-- 40
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
V+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 41 -------VSASGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETF 90
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 180 -IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 150 LVHAQSILAIWACQVVLMGAVEGYRVAGG 178
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGAVEGYRVAGG 180
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 85/152 (55%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP + + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 AKAKPASSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YRI G
Sbjct: 150 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 181
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 39 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 95
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 96 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 154
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 155 VVLMGAVEGYRIAGG 169
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 163 VILMGAVEGYRIAGG 177
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 167 VILMGAIEGYRVAGG 181
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 167 VVLMGAVEGYRVAGG 181
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VILMGAIEGYRVAGG 192
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGFVEGYRIGGG 179
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 167 VVLMGAVEGYRVAGG 181
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGAVEGYRVAGG 180
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 88/152 (57%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 60 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 110
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 111 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 169
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 170 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 201
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 49 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 164 QVVLMGFVEGYRVGGG 179
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAIEGYRVAGG 181
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGAIEGYRVAGG 179
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P F+K + E+IH+RWA
Sbjct: 46 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 103 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 161
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 162 VVLMGAVEGYRIAGG 176
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 97/190 (51%), Gaps = 16/190 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P S F + +K A P KP A + WYG
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTAGKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLV 195
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLM 167
Query: 196 GGAEYYRITN 205
G E YRI +
Sbjct: 168 GAVEGYRIAD 177
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + ELIH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 162
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 163 VVLMGFVEGYRVGGG 177
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 102/196 (52%), Gaps = 19/196 (9%)
Query: 14 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELA 73
+ A L +P V AV+ AP AS F + +K A P KPV+ +
Sbjct: 1 MAASMALSSPSLVGKAVKL-APAASE--VFGEGRVSMRKTAGKP---KPVSSG------S 48
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR +L E P YLTGE GDYG+D GLS P+ F+K + E+IHARW
Sbjct: 49 PWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 106 AMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 165 QVVLMGAVEGYRVAGG 180
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGSVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 104 MLGALGIVFPEPLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 163 VILMGAVEGYRIAGG 177
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAIEGYRVAGG 181
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 84/151 (55%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPA 90
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RW MLGA G + PE F + G G EAVWFK G+ + L+Y G
Sbjct: 91 TFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGN 149
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 96/184 (52%), Gaps = 10/184 (5%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
+++A + + S KPV S+K A+ V++ + + WYG DR FL
Sbjct: 1 MAAATAMHSTTLAGQSLLKPVNELSRKVGTSEAR---VSMRKSSGSDSIWYGADRPKFLG 57
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE
Sbjct: 58 P---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPE 114
Query: 146 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYR 202
K G G EAVWFK GA + L+Y G + + A+ A +++L+G E YR
Sbjct: 115 LLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 173
Query: 203 ITNG 206
+ G
Sbjct: 174 VAGG 177
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 88/152 (57%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 87/152 (57%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K VA S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVASS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 K--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A + VL+G E YRI G
Sbjct: 149 NPSLVHAQSILAIWACQAVLMGAVEGYRIAGG 180
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGAVEGYRVAGG 179
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 166 VVLMGAVEGYRIAGG 180
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 85/151 (56%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE F + G G EAVW K G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YR+ G
Sbjct: 151 PSLVHAQSILAIWACQVLLMGAVEGYRVAGG 181
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGAVEGYRVAGG 179
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 23 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 79
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 80 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQ 138
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 139 VILMGAVEGYRIAGG 153
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M G + ++S P ++ + +K A AK KP A + WYG
Sbjct: 1 MAGATMALTSRALVGKPATTSTRDVFGEGRITMRKTA--AKPKPAASG------SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 53 DRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLM 168
Query: 196 GGAEYYRITNG 206
G E YR+ G
Sbjct: 169 GAVEGYRVAGG 179
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 17 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 73
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 74 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 132
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 133 VVLMGAVEGYRIAGG 147
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 88/152 (57%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G I PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 K--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YRI G
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+SA++ SA + + K + F +K + + + + WYGPDR +L
Sbjct: 3 TSAIQQSA--FTGQTALKQLNEFVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
+IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G PE
Sbjct: 61 ---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEI 117
Query: 147 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 203
K G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+
Sbjct: 118 LEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRV 176
Query: 204 TNG 206
G
Sbjct: 177 GGG 179
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPERVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 177
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 178 VLLMGAVEGYRVAGG 192
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 42 TFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYL 98
KPV S+K A+ + V+ S ++ + WYG DR FL E P YL
Sbjct: 17 VLKPVNELSRKVGNVEARVTMRRTVSKSAGSDSI--WYGADRPKFLGP---FSGETPSYL 71
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
TGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EA
Sbjct: 72 TGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EA 130
Query: 159 VWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
VWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 131 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 33 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 89
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 90 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 148
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 149 VVLMGAVEGYRIAGG 163
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 52 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 109 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 167
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 168 VVLMGAVEGYRIAGG 182
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 167 VLLMGAVEGYRIAGG 181
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 85/152 (55%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP + + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 6 AKAKPASSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 56
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 57 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 115
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YRI G
Sbjct: 116 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 147
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G E+VWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 167 VILMGAVEGYRIAGG 181
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 23 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 79
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 80 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQ 138
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 139 VILMGAVEGYRIAGG 153
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQ 162
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 163 VILMGAVEGYRIGGG 177
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 87/152 (57%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVPSG------SPWYGADRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YRI G
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGLIEGYRVGGG 180
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 164 VVLMGFIEGYRVGGG 178
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 21 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 77
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 78 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQ 136
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 137 VILMGAVEGYRIAGG 151
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 105/208 (50%), Gaps = 34/208 (16%)
Query: 2 ASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSK 61
A+ A S+PA M G P+ VS A + F + +K AA P
Sbjct: 3 AATMALSSPA-------MAGTPVKVSRA-----------TPFGEGRITMRKTAAKPK--- 41
Query: 62 PVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 121
V+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 42 ------VSASGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFA 92
Query: 122 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 179
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 93 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 151
Query: 180 IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 152 VHAQSILAIWACQVVLMGAVEGYRVAGG 179
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 86/151 (56%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K KPV+ S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 3 KPKPVSSS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 53
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 54 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 112
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YR+ G
Sbjct: 113 PSLVHAQSILAIWACQVILMGAVEGYRVAGG 143
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+SA++ SA S + KP KK + + + + + WYGPDR +L
Sbjct: 3 TSAIQQSAFAGS--AALKPQNELVKKTGSFTGGRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 61 ---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEV 117
Query: 147 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 203
+K G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+
Sbjct: 118 LSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRV 176
Query: 204 TNG 206
G
Sbjct: 177 GGG 179
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 29 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 85
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EA WFK G+ + L+Y G I + A+ A +
Sbjct: 86 MLGALGCVFPELLARNGVKFG-EACWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQ 144
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 145 VILMGAVEGYRIAGG 159
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 21 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 77
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 78 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQ 136
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 137 VILMGAVEGYRIAGG 151
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 23 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 79
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 80 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQ 138
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 139 VILMGAVEGYRIAGG 153
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G E+VWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 96/185 (51%), Gaps = 8/185 (4%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A+ + G + S KPV S++ A+ + VS + WYG DR FL
Sbjct: 1 MAAAIAMHSTGLAGQSLLKPVNELSRRVGNVDARVTMRRTVSKSARSDSIWYGADRPKFL 60
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
E P YL GE GDYG+D GLS + F++ + E+IHARWAMLGA G + P
Sbjct: 61 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTP 117
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYY 201
E K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E Y
Sbjct: 118 ELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176
Query: 202 RITNG 206
R+ G
Sbjct: 177 RVAGG 181
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGLIEGYRVGGG 180
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGLIEGYRVGGG 180
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 23 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 79
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 80 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQ 138
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 139 VILMGAVEGYRIAGG 153
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 164 VVLMGAVEGYRVAGG 178
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + ELIH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 162
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 163 VVLMGFVEGYRVGGG 177
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 36 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 92
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 93 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 151
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 152 VVLMGAVEGYRVAGG 166
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGLIEGYRVGGG 180
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YL GE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 95/187 (50%), Gaps = 12/187 (6%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK---WYGPDRRI 82
+++A + + S F+PV S+K S+ VN+ WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLFQPVNELSRKVGN--VDSRVTMRRTVNKSAGSDSIWYGADRPK 58
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G +
Sbjct: 59 FLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCL 115
Query: 143 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAE 199
PE K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E
Sbjct: 116 TPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 174
Query: 200 YYRITNG 206
YR+ G
Sbjct: 175 GYRVAGG 181
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P Y TGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 27 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 83
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 84 MLGALGCVFPEVLSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 142
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 143 VVLMGFVEGYRVGGG 157
>gi|47026947|gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 88/157 (56%), Gaps = 15/157 (9%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K A +KP VS + WYGPDR +L G E P YLTGE PGDYG+
Sbjct: 33 FTMRKTA----AKPKTVS----SGSPWYGPDRVKYL--GPFS-GEAPSYLTGEFPGDYGW 81
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ FSK + E+IH RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 82 DTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 140
Query: 169 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 202
L+Y G + + A+ A +++L+GG Y+
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWATQVLLMGGRRGYK 177
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G E VWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EVVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 84/148 (56%), Gaps = 14/148 (9%)
Query: 62 PVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 121
PV+ SP WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 42 PVSDSP-------WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFA 91
Query: 122 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 179
K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 KNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 150
Query: 180 IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + ++ A +++L+G E YR+ G
Sbjct: 151 VHAQSILSIWATQVILMGAVEGYRVAGG 178
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 164 VVLMGLIEGYRVGGG 178
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 164 VVLMGAVEGYRVGGG 178
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 13/148 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 149
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRI 203
+ + A+ A ++VL+G E YR+
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRV 177
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 162
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 163 VILMGAVEGYRIAGG 177
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 86/149 (57%), Gaps = 13/149 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ S + WYGP+R +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 SKAKPVSSS------SPWYGPNRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLG 149
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRI 203
+ + A+ A ++VL+G E YR+
Sbjct: 150 NPSLVHAQSILAIWACQVVLMGAVEGYRV 178
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 87/152 (57%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKAKQVSSS------SPWYGSDRVLYL--GSLS-GEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWF G+ + L+Y G
Sbjct: 85 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFMAGSQIFSEGGLDYLG 143
Query: 178 K--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YRI G
Sbjct: 144 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 175
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVTPELLAKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWASQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 167 VILMGAVEGYRVGGG 181
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 29 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 85
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EA WFK G+ + L+Y G I + A+ A +
Sbjct: 86 MLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQ 144
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 145 VILMGAVEGYRIAGG 159
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILERNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGLIEGYRVGGG 179
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 98/187 (52%), Gaps = 12/187 (6%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRI 82
+++A + + S KPV S+K A+ + V+ S ++ + WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLVKPVNELSRKVGNVEARVTMRRTVSKSAGSDSI--WYGADRPK 58
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G +
Sbjct: 59 FLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCL 115
Query: 143 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAE 199
PE K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E
Sbjct: 116 TPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 174
Query: 200 YYRITNG 206
YR+ G
Sbjct: 175 GYRVAGG 181
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
+++ T + + + K + S+K A+ V + + + WYG DR +L
Sbjct: 1 MAACTATHSTALAGQTALKSINELSRKVGNVQAR---VTMRKASSSDSIWYGADRPKYL- 56
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
G L E P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE
Sbjct: 57 -GPLS-GETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPE 114
Query: 146 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYR 202
K G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 115 LLAKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYR 173
Query: 203 ITNG 206
+ G
Sbjct: 174 VAGG 177
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCDFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 48 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRW 103
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 104 AMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 162
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 163 QVVLMGFVEGYRVGGG 178
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGADRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 105 MLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 164 VVLMGLIEGYRVGGG 178
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 96/188 (51%), Gaps = 19/188 (10%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPV-------AVSPVNEELAKW 75
P+ ++ V+T A P P+ +K AAP K+ PV V+ + +KW
Sbjct: 50 PVKKTAPVKTVKKAAPAPKKTVPMKTVVRK-AAPVRKAAPVRKAGKASGVNQAGSDKSKW 108
Query: 76 YGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
YGP+RR++LP GLLD +++P Y+ G + GDYG+DP L K ++Y+ E+ HARWA
Sbjct: 109 YGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKD-GKIAQYRIAEVQHARWA 167
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
ML G +IPEA G N W +TG + LDG I N E+ L
Sbjct: 168 MLAVPGVVIPEALGVPGGN------WTETGKVFLDGEAGR---PEILGNPYLFTAIEVAL 218
Query: 195 VGGAEYYR 202
+ G E YR
Sbjct: 219 LAGVEGYR 226
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE-LAKWYGPDRRIFLP 85
+SA++ S+ + +T KP +K A + + V + WYGPDR P
Sbjct: 3 TSAIQHSS--FAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDR----P 56
Query: 86 EGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G P
Sbjct: 57 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 116
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 201
E +K G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E Y
Sbjct: 117 EILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGY 175
Query: 202 RITNG 206
RI G
Sbjct: 176 RIGGG 180
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 11/174 (6%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---VNEELAKWYGPDRRIFLPEGLLDRSE 93
AS+ + K ++K+A P + +P + +L WYGPDR +L ++
Sbjct: 8 ASSATVVKQTPFLGQRKSANPLRDVVAMGTPKFTMGNDL--WYGPDRVKYLGPF---SAQ 62
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRV 122
Query: 154 CGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRIT 204
E VWFK G+ + L+Y G + + AV+ +IVL+G E +RI
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRIN 176
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 73 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 131
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 132 VILMGAVEGYRIAGG 146
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 82/136 (60%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 162 QVVLMGFVEGYRVGGG 177
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 100/194 (51%), Gaps = 21/194 (10%)
Query: 16 AKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
A L +P AV+ S P AS + V++ +K AA P S SP W
Sbjct: 4 ATMALSSPSFAGQAVKLS-PSASEITGNGRVSM--RKTAAKPVSSS----SP-------W 49
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YGPDR +L E P YLT E PGDYG+D GLS P+ F+K + E+IH RWAM
Sbjct: 50 YGPDRVKYLGP---FSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 192
LGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++
Sbjct: 107 LGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 193 VLVGGAEYYRITNG 206
+L+G E YR+ G
Sbjct: 166 ILMGAVEGYRVAGG 179
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATR 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 90/161 (55%), Gaps = 15/161 (9%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K A AK+KPV+ + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 33 FTMRKTA--AKAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEKPGDYGW 81
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH RWA+L G + PE ++ G G EAVWFK G+ +
Sbjct: 82 DTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPELLSRNGVKFG-EAVWFKVGSQIF 140
Query: 169 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 181
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 82/136 (60%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 162 QVVLMGFVEGYRVGGG 177
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 84/152 (55%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A + WYG DR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKPKPAASG------SPWYGADRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
I + A+ A ++VL+G E YR+ G
Sbjct: 149 NPSLIHAQSILAIWACQVVLMGAVEGYRVAGG 180
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGLIEGYRVGGG 180
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK-PVAVSPVNEELAKWYGPDRRIFLPEGLLDRS 92
A AS+ + K ++K+A P + + S WYGPDR +L +
Sbjct: 5 AATASSATVVKQTPFLGQRKSANPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGPF---SA 61
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 62 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVR 121
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRIT 204
E VWFK G+ + L+Y G + + AV+ +IVL+G E +RI
Sbjct: 122 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRIN 176
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGAVEGYRVAGG 180
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 89/169 (52%), Gaps = 10/169 (5%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S KPV S++ A A+ V + + WYG DR FL E P YL G
Sbjct: 16 SLLKPVNELSRRVGANEAR---VTMRKSAGSDSIWYGADRPKFLGP---FSGETPSYLNG 69
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAVW
Sbjct: 70 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVW 128
Query: 161 FKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
FK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 129 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 177
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 162
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 163 VVLMGFVEGYRVGGG 177
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 AMLGALGCLFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 165 QVVLMGLIEGYRVGGG 180
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAV FK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGAVEGYRIAGG 179
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 86/151 (56%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L G + P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYL--GPFSGNS-PSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 162
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 163 VVLMGFIEGYRVGGG 177
>gi|225690798|gb|ACO06085.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 196
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 162
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 163 VVLMGFIEGYRVGGG 177
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 165 VVLMGLIEGYRIGGG 179
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 30 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 86
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 87 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 145
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 146 VVLMGLIEGYRVGGG 160
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 13/151 (8%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D LS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAELSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A ++VL+G E YR+ G
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 86/152 (56%), Gaps = 13/152 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EA WFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLG 148
Query: 178 KNIPIN---LVFAVIAEIVLVGGAEYYRITNG 206
++ L+ ++VL+G E YRI G
Sbjct: 149 NPSLVHAQSLLAIWACQVVLMGAVEGYRIAGG 180
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
M GA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MPGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 164 VILMGAVEGYRIAGG 178
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +FL G L E P YLTGE PGDYG+D G S P F++Y+ E+IHARWA
Sbjct: 42 WYGPDRPLFL--GSLS-GEPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHARWA 98
Query: 135 MLGAAGFIIPEAFNKFGAN-CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
+LGA G + PE + G G A+WFK G+ + LNY G I + A +A
Sbjct: 99 LLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAV 158
Query: 191 EIVLVGGAEYYR 202
+++++G AE +R
Sbjct: 159 QVIVMGAAEGFR 170
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 44 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 100
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 101 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 159
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 160 VVLMGFVEGYRVGGG 174
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YRI G
Sbjct: 164 QVVLMGFIEGYRIGGG 179
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YRI G
Sbjct: 164 QVVLMGFIEGYRIGGG 179
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 164 VVLMGLIEGYRVGGG 178
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 162
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 163 VVLMGFIEGYRVGGG 177
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 162
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 163 VILMGAVEGYRIAGG 177
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 46 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 103 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 162 VVLMGFVEGYRVGGG 176
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 164
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YRI G
Sbjct: 165 QVVLMGLIEGYRIGGG 180
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YRI G
Sbjct: 164 QVVLMGFIEGYRIGGG 179
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVI-AE 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGAVEGYRVAGG 179
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 44 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 100
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 101 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 159
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 160 VVLMGFVEGYRVGGG 174
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YRI G
Sbjct: 164 QVVLMGFIEGYRIGGG 179
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 41 STFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
S KPV S+K + A+ + V S ++ + WYG DR +L E P Y
Sbjct: 16 SLLKPVNELSRKVGSSQARVTMRRTVNKSAGSDSI--WYGADRPKYLGP---FSGETPSY 70
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
L GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G E
Sbjct: 71 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKFG-E 129
Query: 158 AVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
AVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 130 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 181
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YRI G
Sbjct: 164 QVVLMGFIEGYRIGGG 179
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 18 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 74
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 75 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQ 133
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 134 VVLMGLIEGYRVGGG 148
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YRI G
Sbjct: 165 QVVLMGFIEGYRIGGG 180
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S +K A AK KP A + WYGPDR +L E P YLTGE GDYG+D
Sbjct: 2 SMRKTA--AKPKPAASG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWD 50
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P+ F+K + E+IHARWAMLGA G + PE + G G EAVWFK G+ +
Sbjct: 51 TAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFS 109
Query: 170 GNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 110 EGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGG 149
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLSKNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 164 VVLMGFVEGYRVGGG 178
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWAC 164
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YRI G
Sbjct: 165 QVVLMGFIEGYRIGGG 180
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E YRI NG G
Sbjct: 166 VILMGLVEGYRI-NGLPG 182
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGF 207
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI NG
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI-NGL 182
Query: 208 GG 209
G
Sbjct: 183 PG 184
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 82/140 (58%), Gaps = 7/140 (5%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L + P YLTGE GDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 38 EFYGPNRAKWLGP---FSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARW 94
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 190
AMLGA G I PE K G G EAVWFK GA + LNY G + I+ ++ +
Sbjct: 95 AMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 153
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
+++L+G E YR+ G G+
Sbjct: 154 QVILMGLVEGYRVNGGPAGE 173
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 164 QVVLMGFVEGYRVGGG 179
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTG+ PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI---PINLVFAVIA 190
AMLGA G PE +K G N G EAVWFK GA + L+Y G P +++
Sbjct: 103 AMLGALGCFFPEILSKNGVNFG-EAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAV 161
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 162 QVVLMGFVEGYRVGGG 177
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E YRI NG G
Sbjct: 166 VILMGLVEGYRI-NGLPG 182
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE K G G E+VWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 96/185 (51%), Gaps = 10/185 (5%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A + + S KPV S+K A+ S S ++ + WYG DR +L
Sbjct: 1 MAAATAMHSTALAGQSLLKPVNELSRKVGNVEARISMRKTASKSSDSI--WYGADRPKYL 58
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + P
Sbjct: 59 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTP 115
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYY 201
E K G G EAVWFK GA + L+Y G + + A+ A +++L+G E Y
Sbjct: 116 ELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGY 174
Query: 202 RITNG 206
R+ G
Sbjct: 175 RVAGG 179
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 44 WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 100
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 101 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 159
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 160 VVLMGAVEGYRVAGG 174
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE K G G E+VWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGTDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 167 VILMGAVEGYRIGGG 181
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 97/188 (51%), Gaps = 13/188 (6%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKK----AAPPAKSKPVAVSPVNEELAKWYGPDRR 81
+++A + + S KPV S+K A + V+ S ++ + WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTI--WYGADRP 58
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G
Sbjct: 59 KFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGC 115
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGA 198
+ PE K G G EAVWFK GA + L+Y G + + A+ A ++VL+G
Sbjct: 116 LTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 174
Query: 199 EYYRITNG 206
E YR+ G
Sbjct: 175 EGYRVAGG 182
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 83/140 (59%), Gaps = 7/140 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L P YL+GE PGDYG+D GLS P+ F+KY+ E+IHARWA
Sbjct: 19 WYGEDRPKWLGP---FSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWA 75
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G + G EAVW+K GA + L+Y G + + A++A +
Sbjct: 76 MLGALGCLTPELLAKNGVSFG-EAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAILASQ 134
Query: 192 IVLVGGAEYYRITNGFGGQA 211
++L+G E YR+ G GG+
Sbjct: 135 VLLMGAIEGYRVYGGPGGEG 154
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 192 IVLVGGAEYYRITNG 206
+ L+G E YR+ G
Sbjct: 166 VGLMGLIEGYRVGGG 180
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 2 AATASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 58
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 59 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 118
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGF 207
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI NG
Sbjct: 119 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI-NGL 177
Query: 208 GG 209
G
Sbjct: 178 PG 179
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGADRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 163
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 164 VVLMGFIEGYRIGGG 178
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGADRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGLIEGYRVGGG 179
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGTDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 165 VILMGAVEGYRIGGG 179
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGF 207
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI NG
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI-NGL 182
Query: 208 GG 209
G
Sbjct: 183 PG 184
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDY +D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQ 165
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 166 VVLMGLIEGYRVGGG 180
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 43 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 99
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 100 MLGALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQ 159
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E +RI NG G
Sbjct: 160 VLLMGAVEGFRI-NGLDG 176
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 7 WYGPERVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 63
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 64 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 122
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 123 VLLMGAVEGYRVAGG 137
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 95/185 (51%), Gaps = 8/185 (4%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A + + S KPV S+K A+ S + S + WYG DR +L
Sbjct: 1 MAAATAMHSTALAGQSLLKPVNELSRKVGNVEARVSMRKSASKSAASDSIWYGADRPKYL 60
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + P
Sbjct: 61 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTP 117
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYY 201
E K G G EAVWFK GA + L+Y G + + A+ A +++L+G E Y
Sbjct: 118 ELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGY 176
Query: 202 RITNG 206
R+ G
Sbjct: 177 RVAGG 181
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 34 APGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + A P P+ WYGPDR +L
Sbjct: 4 AATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGP---F 60
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 61 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGF 207
E +WFK GA + L+Y G + + AV+ ++VL+G E +RI NG
Sbjct: 121 LRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGL 179
Query: 208 GG 209
G
Sbjct: 180 PG 181
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S F+ L SK ++ S VS + + WYG DR +L E P YL G
Sbjct: 16 SLFRFNELSSKVGSSQARVSMRKTVSKSSGSDSIWYGADRPKWLGP---FSGETPSYLNG 72
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAVW
Sbjct: 73 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVW 131
Query: 161 FKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
FK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 132 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGG 180
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E YRI NG G
Sbjct: 166 VILMGLVEGYRI-NGLPG 182
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGF 207
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI NG
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI-NGL 182
Query: 208 GG 209
G
Sbjct: 183 PG 184
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 49 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAV-IAE 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A+
Sbjct: 106 MLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGFVEGYRVGGG 179
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + +IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 162
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YRI G
Sbjct: 163 VVLMGFVEGYRIGGG 177
>gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adiantum capillus-veneris]
Length = 215
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 43 FKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEV 102
KPV S+K A+ + +A + + YG DR ++L G S P YLTGE
Sbjct: 25 LKPVNELSRKVGTSEARVQMMAPKKSSSGNIR-YGADRLLYL--GPFSGSP-PSYLTGEF 80
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G G EAVWFK
Sbjct: 81 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFK 139
Query: 163 TGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRI 203
G+ + L+Y G + + A+ A +++L+G E YR+
Sbjct: 140 AGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 183
>gi|222641394|gb|EEE69526.1| hypothetical protein OsJ_28989 [Oryza sativa Japonica Group]
Length = 225
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 91/164 (55%), Gaps = 13/164 (7%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ +SS V A +++ + F + +K AA P KP A S + WYG DR ++
Sbjct: 1 MALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGADRVLY 52
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G +
Sbjct: 53 L--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 109
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFGKNIPINLVF 186
PE + G G EAVWFK G+ +L G T + I +N F
Sbjct: 110 PELLARNGVKFG-EAVWFKAGSQVLQGRGTRQTILQKIRMNHCF 152
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGP R FL G P YLTGE PGDYG+D GLS P F++Y+ E+IHARW
Sbjct: 37 SWYGPSRPKFL--GPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARW 94
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 190
AMLGA G ++PE + G N WF GA + + L Y G IN +V +I
Sbjct: 95 AMLGALGCVVPELLD--GTN---HIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIV 149
Query: 191 EIVLVGGAEYYRITNG 206
+++L+ E YR+ G
Sbjct: 150 QVILMSYVEGYRVNGG 165
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 77/139 (55%), Gaps = 12/139 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L G RS P YL GE PGDYG+D GLS P+ FS+Y+ E+IHARWA
Sbjct: 66 WYGADRPGYL--GAFTRS--PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWA 121
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAE 191
MLGA G ++PE ++ WF GA + + Y G I N++ V +
Sbjct: 122 MLGALGIVVPELLDQTN-----HVAWFDAGATIFGPKGIQYLGVPGLINAKNIIATVAVQ 176
Query: 192 IVLVGGAEYYRITNGFGGQ 210
++L+G E YR+ G G+
Sbjct: 177 VILMGAIEGYRVNGGPAGE 195
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 107 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E +RI NG G
Sbjct: 167 VILMGLVEGFRI-NGLDG 183
>gi|190694831|gb|ACE88963.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 181
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE GDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 40 WYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRW 95
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 96 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 154
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 155 QVVLMGFVEGYRVGGG 170
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 108 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 167
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E +RI NG G
Sbjct: 168 VILMGLVEGFRI-NGLDG 184
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
W+GPD +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 12 WHGPDGVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 68
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 69 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 127
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 128 VILMGAVEGYRIAGG 142
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE GDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 162 QVVLMGFVEGYRVGGG 177
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 96/183 (52%), Gaps = 10/183 (5%)
Query: 32 TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK--WYGPDRRIFLPEGLL 89
+ A AS+ + K + K A P + VA+ ++ WYGPDR +L
Sbjct: 3 SMAATASSTTVVKATPFLGQTKNANPLRDV-VAMGSARFTMSNDLWYGPDRVKYLGPF-- 59
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K
Sbjct: 60 -SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEK 118
Query: 150 FGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ E VWFK G+ + L+Y G + + AV+ ++VL+G E +RI NG
Sbjct: 119 WVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NG 177
Query: 207 FGG 209
G
Sbjct: 178 LPG 180
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 49 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + AV A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGLIEGYRVGGG 179
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE GDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 162 QVVLMGFVEGYRVGGG 177
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 45 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 161
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G E +RI NG G
Sbjct: 162 VVLMGLVEGFRI-NGLPG 178
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 45 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 161
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G E +RI NG G
Sbjct: 162 VVLMGLVEGFRI-NGLPG 178
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 8/146 (5%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGP+R +L G +S P YL GE PGDYG+D GLS P+ F++Y+ E
Sbjct: 29 VTRAAIEFYGPNRAGYL--GPFTKS--PSYLNGEYPGDYGWDTAGLSADPETFARYREIE 84
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---L 184
+IHARWAMLGA G + PE K G + G EAVW+K G+ + L+Y G I+ +
Sbjct: 85 VIHARWAMLGALGCVTPELLAKNGVSFG-EAVWWKAGSQIFAPGGLDYLGNPSLIHAQSI 143
Query: 185 VFAVIAEIVLVGGAEYYRITNGFGGQ 210
+ V ++++L+G E YR+ G G+
Sbjct: 144 IAIVFSQVLLMGLIEGYRVNGGPAGE 169
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 49 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 164
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 165 VVLMGLIEGYRVGGG 179
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 8/141 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 192 IVLVGGAEYYRIT-NGFGGQA 211
++L+G E YR+ NG G+A
Sbjct: 166 VILMGAVEGYRVAGNGPLGEA 186
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 8/141 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 192 IVLVGGAEYYRIT-NGFGGQA 211
++L+G E YR+ NG G+A
Sbjct: 166 VILMGAVEGYRVAGNGPLGEA 186
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 54 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 110
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 111 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 170
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E +RI NG G
Sbjct: 171 VILMGLVEGFRI-NGLDG 187
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 192 IVLVGGAEYYRI 203
++L+G E YR+
Sbjct: 166 VILMGAVEGYRV 177
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E YRI NG G
Sbjct: 167 VILMGLVEGYRI-NGLDG 183
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 74/121 (61%), Gaps = 10/121 (8%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDP 110
+KAAP KS V +L+KWYGP+RR++LP GLLD +++P YL G + GDYG+DP
Sbjct: 63 RKAAPVRKSSGKRGDGV--DLSKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
L K +Y+A E+IHARWAML G +IPEA P VW +TG + LDG
Sbjct: 121 LQLGKD-GKVEQYRAAEVIHARWAMLAIPGIVIPEALGI------PGGVWTETGKVFLDG 173
Query: 171 N 171
Sbjct: 174 E 174
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDY +D GLS P+ F++ + E+IH+RW
Sbjct: 37 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRW 92
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 93 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 151
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 152 QVVLMGFVEGYRVGGG 167
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E YRI NG G
Sbjct: 166 VILMGLVEGYRI-NGLDG 182
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQ 162
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G E +RI NG G
Sbjct: 163 VVLMGLVESFRI-NGLPG 179
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 76/135 (56%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWA
Sbjct: 51 WYGADRPKFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YR+ G
Sbjct: 167 VILMGAVEGYRVAGG 181
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRI 82
P + A+ S+ G + L +KK A A A S V +E + WY R
Sbjct: 79 PFTLVKAIANSSIG----EQLQQRMLKTKKAAQEAAGEAREAQSNVRDE-SMWYREGRPK 133
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
+L D P++L GE PGDYG+D GLS+ P F +Y +E++HARWAML A G +
Sbjct: 134 WLGPIPYD---YPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVV 190
Query: 143 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLV 195
IPE ++FG E VW+K G L G+TL+Y G IP ++ +++L+
Sbjct: 191 IPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLG--IPGLHIAGAQGILVIAFCQVILM 248
Query: 196 GGAEYYR 202
G EY R
Sbjct: 249 LGPEYAR 255
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQ 164
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G E YRI NG G
Sbjct: 165 VVLMGLVEGYRI-NGLPG 181
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGPF---SAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQ 164
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G E YRI NG G
Sbjct: 165 VVLMGLVEGYRI-NGLPG 181
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 95/186 (51%), Gaps = 20/186 (10%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA--PPAKSKPVAVSPVNEELAKWYGPDRRIFL 84
SA A G S + V F + + KS P ++ WYG DR
Sbjct: 8 QSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSI---------WYGEDR---- 54
Query: 85 PEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G +
Sbjct: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVF 114
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEY 200
PE +K G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 115 PEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEG 173
Query: 201 YRITNG 206
YR+ G
Sbjct: 174 YRVGGG 179
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
V P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 182
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
Query: 183 NLVFAVIA-EIVLVGGAEYYRI 203
+ A+ A +++L+G E YR+
Sbjct: 155 QSILAIWATQVILMGAVEGYRV 176
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
V P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 182
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
Query: 183 NLVFAVIA-EIVLVGGAEYYRI 203
+ A+ A +++L+G E YR+
Sbjct: 155 QSILAIWATQVILMGAVEGYRV 176
>gi|515616|emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
Length = 202
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 99/189 (52%), Gaps = 22/189 (11%)
Query: 27 SSAVRTSAP--GASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFL 84
SS+V T P G + STF P+ + A K + + WYGPDR +L
Sbjct: 8 SSSVLTPTPFLGQTKGSTFNPL-----RDAVSLGSPKYTMGNDL------WYGPDRVKYL 56
Query: 85 -PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
P + + P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I
Sbjct: 57 GPFSV----QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIT 112
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEY 200
PE K+ E VWFK G+ + L+Y G + + AV+ +++L+G E
Sbjct: 113 PEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 172
Query: 201 YRITNGFGG 209
+RI NG G
Sbjct: 173 FRI-NGLDG 180
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 21 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 77
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 78 MLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQ 136
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 137 VVLMGFVEGYRVGGG 151
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 182 INLVFAVIA-EIVLVGGAEYYRIT-NGFGGQA 211
+ A+ A +++L+G E YR+ NG G+A
Sbjct: 154 AQSILAIWATQVILMGAVEGYRVAGNGPLGEA 185
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 182 INLVFAVIA-EIVLVGGAEYYRI 203
+ A+ A +++L+G E YR+
Sbjct: 154 AQSILAIWATQVILMGAVEGYRV 176
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 8/141 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 45 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 160
Query: 192 IVLVGGAEYYRIT-NGFGGQA 211
++L+G E YR+ NG G+A
Sbjct: 161 VILMGAVEGYRVAGNGPLGEA 181
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVEFG-EAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 182 INLVFAVIA-EIVLVGGAEYYRI 203
+ A+ A +++L+G E YR+
Sbjct: 154 AQSILAIWATQVILMGAVEGYRV 176
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 81/140 (57%), Gaps = 9/140 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + E+IH RW
Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 AMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWAC 164
Query: 191 EIVLVGGAEYYRITNGFGGQ 210
++VL+G E YR+ G G+
Sbjct: 165 QVVLMGLIEGYRVGGGTLGE 184
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 108 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 167
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G E +RI NG G
Sbjct: 168 VVLMGLVEGFRI-NGLDG 184
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ E+IH RW
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 163
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 164 QVVLMGFVEGYRVGGG 179
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 8/141 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 45 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 160
Query: 192 IVLVGGAEYYRIT-NGFGGQA 211
++L+G E YR+ NG G+A
Sbjct: 161 VILMGAVEGYRVAGNGPLGEA 181
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 8/141 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 32 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 88
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 89 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 147
Query: 192 IVLVGGAEYYRIT-NGFGGQA 211
++L+G E YR+ NG G+A
Sbjct: 148 VILMGAVEGYRVAGNGPLGEA 168
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWA
Sbjct: 45 WYGPDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K+ E VWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 192 IVLVGGAEYYRIT 204
++L+G E YRI
Sbjct: 162 VILMGLVEGYRIN 174
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 81/146 (55%), Gaps = 10/146 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWA
Sbjct: 45 WYGPDRVKFLGPF---SAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE +K+ E VWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 192 IVLVGGAEYYRITN----GFGGQASP 213
++L+G E YRI G GG P
Sbjct: 162 VILMGLVEGYRINGLPDVGEGGDLYP 187
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 163
Query: 192 IVLVGGAEYYRI 203
++L+G E YR+
Sbjct: 164 VILMGAVEGYRV 175
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 96/182 (52%), Gaps = 16/182 (8%)
Query: 37 ASNPSTFKPVALFSKKKAAP--PAKSKPVAVSP---VNEELAKWYGPDRRIFL-PEGLLD 90
S+ S P + KA+ P + SP + +L WYGPDR +L P +
Sbjct: 6 TSSSSVLSPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDL--WYGPDRVKYLGPFSV-- 61
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
+ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 62 --QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 119
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGF 207
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI NG
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI-NGL 178
Query: 208 GG 209
G
Sbjct: 179 DG 180
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 193
AMLGA G + P+ +K G EA+WFK GA + L+Y G N+ + ++A +
Sbjct: 94 AMLGALGCVTPKLLSKNGVQF-SEALWFKAGAQIFQEGGLDYLG-NLSLVHAQNIVATLA 151
Query: 194 L-VGGAE 199
VGG +
Sbjct: 152 CQVGGRD 158
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 6 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 62
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 63 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 122
Query: 192 IVLVGGAEYYRIT 204
+VL+G E +RI
Sbjct: 123 VVLMGLVEGFRIN 135
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL+GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVI-AE 191
MLGA G + PE K+ E VWFK GA + L+Y G + + AV+ ++
Sbjct: 106 MLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQ 165
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E +RI NG G
Sbjct: 166 VLLMGLVEGFRI-NGLDG 182
>gi|397789264|gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 67 PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 126
PV + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 PVASSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 98
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 99 EVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 148
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
+LGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 108 LLGALGCITPEVLGKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 167
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G AE +RI NG G
Sbjct: 168 VVLMGLAEGFRI-NGLDG 184
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 96/182 (52%), Gaps = 16/182 (8%)
Query: 37 ASNPSTFKPVALFSKKKAAP--PAKSKPVAVSP---VNEELAKWYGPDRRIFL-PEGLLD 90
S+ S P + KA+ P + SP + +L WYGPDR +L P +
Sbjct: 6 TSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDL--WYGPDRVKYLGPFSV-- 61
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
+ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 62 --QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 119
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGF 207
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI NG
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI-NGL 178
Query: 208 GG 209
G
Sbjct: 179 DG 180
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVI-AE 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQ 164
Query: 192 IVLVGGAEYYRITNG 206
+V +G E YR+ G
Sbjct: 165 VVFMGAVEGYRVAGG 179
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 103 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 162
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G E +RI NG G
Sbjct: 163 VVLMGLVEGFRI-NGLPG 179
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE ++G E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 158 AVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGFGGQ 210
+VWF+ GA + L+Y G I+ + VI++++L+G E YR+ G G+
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGE 116
>gi|157267420|gb|ABV26426.1| light-harvesting chlorophyll a/b-binding protein [Camellia
sinensis]
Length = 153
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 46 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
MLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 103 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 144
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 164
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G E +RI NG G
Sbjct: 165 VVLMGLVEGFRI-NGLPG 181
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 97/188 (51%), Gaps = 13/188 (6%)
Query: 29 AVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP----VNEELAKWYGPDRRIFL 84
A A AS+ S +P ++ ++ V++ + EL WYGPDR +L
Sbjct: 2 ASTVMAATASSSSVLRPTPFLGQRGSSANPLKDVVSMGNGKYIMGNEL--WYGPDRVKYL 59
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I P
Sbjct: 60 GP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 116
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYY 201
E K+ E VWFK GA + L+Y G + + AV+ ++VL+G E +
Sbjct: 117 EVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGF 176
Query: 202 RITNGFGG 209
RI NG G
Sbjct: 177 RI-NGLPG 183
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 81/139 (58%), Gaps = 9/139 (6%)
Query: 75 WYGPDRRIFL-PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR +L P + + P YLTGE PGDYG+D GLS P+ F+K +A E+IH RW
Sbjct: 47 WYGPDRVKYLGPFSV----QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G I PE K+ E VWFK G+ + L+Y G + + AV+
Sbjct: 103 AMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 191 EIVLVGGAEYYRITNGFGG 209
+++L+G E +RI NG G
Sbjct: 163 QVILMGLVEGFRI-NGLDG 180
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 8/141 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 16 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 73 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 192 IVLVGGAEYYRIT-NGFGGQA 211
++L+G E YR+ NG G+A
Sbjct: 132 VILMGAVEGYRVAGNGPLGEA 152
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 8/141 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 28 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 84
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 85 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 143
Query: 192 IVLVGGAEYYRIT-NGFGGQA 211
++L+G E YR+ NG G+A
Sbjct: 144 VILMGAVEGYRVAGNGPLGEA 164
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 52 KKAAPPAKS--KPVAVSPVNEELAKWYGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGY 108
KKAAP KS KP S +LAKWYG +RR +LP GLLD +++P Y+ G + GDYG+
Sbjct: 60 KKAAPVKKSSGKP---SQAGGDLAKWYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGF 116
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
DP L + Y+A E+IHARWAML G +IPEA P VW +TG + L
Sbjct: 117 DPLKLGAD-GKINDYRAAEVIHARWAMLAIPGIVIPEALGI------PGGVWTETGKVFL 169
Query: 169 DGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
DG PI +FA I +I L E YR
Sbjct: 170 DGEAGRPEILQNPI--IFAGI-QIALFAAVEGYR 200
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 79/134 (58%), Gaps = 7/134 (5%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAM
Sbjct: 4 YGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 60
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 192
LGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A ++
Sbjct: 61 LGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 119
Query: 193 VLVGGAEYYRITNG 206
VL+G E YR+ G
Sbjct: 120 VLMGFIEGYRVGGG 133
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 79/134 (58%), Gaps = 7/134 (5%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAM
Sbjct: 4 YGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 60
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 192
LGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A ++
Sbjct: 61 LGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 119
Query: 193 VLVGGAEYYRITNG 206
VL+G E YR+ G
Sbjct: 120 VLMGFVEGYRVGGG 133
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + E+IH RW
Sbjct: 10 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRW 65
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 66 AMLGALGCVFPELLVKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 124
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 125 QVVLMGLIEGYRVGGG 140
>gi|397789260|gb|AFO67219.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 155
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
LF + + +KPV+ + WYGPDR +L E P YLTGE PGDYG
Sbjct: 27 LFGNGRISMRKTAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYG 77
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 78 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQI 136
Query: 168 LDGNTLNYFG 177
L+Y G
Sbjct: 137 FSEGGLDYLG 146
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE GDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 106 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E YRI NG G
Sbjct: 166 VILMGLVEGYRI-NGLPG 182
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 12/162 (7%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
L KK +A SK A++ + + WYG +R +L D P+YLTGE+PGDYG
Sbjct: 86 LEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYD---YPKYLTGELPGDYG 142
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
+D GLS+ P F K+ +E++HARWAML + G ++PE + FGA E +W++ G
Sbjct: 143 FDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSK 202
Query: 168 LDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYR 202
L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 203 LKGDTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYAR 242
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 12/162 (7%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
L KK +A SK A++ + + WYG +R +L D P+YLTGE+PGDYG
Sbjct: 86 LEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYD---YPKYLTGELPGDYG 142
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
+D GLS+ P F K+ +E++HARWAML + G ++PE + FGA E +W++ G
Sbjct: 143 FDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSK 202
Query: 168 LDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYR 202
L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 203 LKGDTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYAR 242
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 52 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 109 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 168
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E +RI NG G
Sbjct: 169 VLLMGLVEGFRI-NGLPG 185
>gi|116785674|gb|ABK23816.1| unknown [Picea sitchensis]
Length = 166
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYL--GPFS-EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
MLGA G + PE K G G EAVWFK GA + L+Y G
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLG 148
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK GA + L+Y G + + AV+ +
Sbjct: 103 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 162
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E +RI NG G
Sbjct: 163 VLLMGLVEGFRI-NGLDG 179
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P+ L SE P Y TGE PGDYG+D GLS P+ F++ + E+IH RW
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAC 163
Query: 191 EIVLVGGAEYYRITNG 206
++VL+G E YR+ G
Sbjct: 164 QVVLMGFVEGYRVGGG 179
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 13 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 69
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E +WFK GA + L+Y G + + AV+ +
Sbjct: 70 MLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 129
Query: 192 IVLVGGAEYYRIT 204
+VL+G E +RI
Sbjct: 130 VVLMGLVEGFRIN 142
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 103 MLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQ 162
Query: 192 IVLVGGAEYYRITNGFGG 209
+VL+G E +RI NG G
Sbjct: 163 VVLMGLVEGFRI-NGLDG 179
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 77/139 (55%), Gaps = 16/139 (11%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYG +R +L +S P YLTGE PGDYG+D GLS P F Y+ E+IHARW
Sbjct: 88 EWYGENRPKYLGP---FQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARW 144
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA--- 190
AMLGA G I PE N G N VWFK G + + N ++Y G NLV A A
Sbjct: 145 AMLGALGCIFPELLNSAGFNL---PVWFKAGGTIFE-NGIDYLGNP---NLVHAQSALAV 197
Query: 191 ---EIVLVGGAEYYRITNG 206
++VL+G +E YR G
Sbjct: 198 LSVQVVLMGASEAYRFNGG 216
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 49 FSKK----KAAPPAKS---KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
FS+K A PPA+ K A P ++YGP+R +L G + P Y +
Sbjct: 7 FSRKALQVSARPPARRGTGKTAASRPPPAPGIEFYGPNRAKWL--GPYSENATPAYRLAK 64
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G G EAVWF
Sbjct: 65 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFG-EAVWF 123
Query: 162 KTGALLLDGNTLNYFGKNIPINLVFAVIA-------EIVLVGGAEYYRITNGFGGQ 210
K GA + L+Y G +LV A +++L+G E YR+ G G+
Sbjct: 124 KAGAQIFSEGGLDYLGNP---SLVHAQNIRRHPGRFKVILMGLVEGYRVNGGPAGE 176
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G + PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 107 MLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E +RI NG G
Sbjct: 167 VLLMGLVEGFRI-NGLDG 183
>gi|449515811|ref|XP_004164941.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like,
partial [Cucumis sativus]
Length = 149
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
MLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 7/144 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 122
+V+P + +YGP+R ++ +G ++PEYL GE PGDYG D F L + P++++K
Sbjct: 2 SVAPSQDTRTAYYGPNRPLW--KGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAK 59
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
++ EL++ RWAMLG G ++PE N G E VWFKTGA + ++Y G I
Sbjct: 60 LRSQELMNGRWAMLGITGCLVPELINS-NPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFI 118
Query: 183 N---LVFAVIAEIVLVGGAEYYRI 203
N LV ++ + +L+G AEY RI
Sbjct: 119 NAHSLVAVIVVQALLMGVAEYARI 142
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 8 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 67
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 68 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGG 123
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 94/188 (50%), Gaps = 19/188 (10%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDR-R 81
P A+ S+ G S + KKK A S+ A + +KWYG +R R
Sbjct: 62 PFTAVKAIANSSLGESLRRRLE-----EKKKEAVENSSRFKAKAQEARNDSKWYGKERPR 116
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
F P + P YLTGE+PGDYG+D GL K F KY +E++HARWAML A G
Sbjct: 117 WFGPIPY----DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGA 172
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVL 194
+IPE + GA E VW++ G L G TL+Y G IP ++ I +++L
Sbjct: 173 LIPEVLDLTGAFHFAEPVWWRVGYSKLQGETLDYLG--IPGLHVAGSQGVIVIAICQVLL 230
Query: 195 VGGAEYYR 202
+ G EY R
Sbjct: 231 MVGPEYAR 238
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG +R +L E P YLTGE PGDYG+D GLS P+ F++ + ++IH RWA
Sbjct: 50 WYGSERVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 192 IVLVGGAEYYRI 203
++L+G E YR+
Sbjct: 166 VILMGAVEGYRV 177
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 81/143 (56%), Gaps = 15/143 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGPDR +L + P YLTGE PGDYG+D GLS P+ F++Y+ E+IHARW
Sbjct: 31 EFYGPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARW 87
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 190
AMLGA G I PE A E VWFK GA + L+Y G ++ ++ +
Sbjct: 88 AMLGALGCITPELIGGDIA----EPVWFKAGAQIFSEGGLDYLGNPSLVHAQSIIATLAV 143
Query: 191 EIVLVGGAEYYR-----ITNGFG 208
+++L+G AE +R + GFG
Sbjct: 144 QVILMGQAEAFRAAGYVVPGGFG 166
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 93/188 (49%), Gaps = 19/188 (10%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDR-R 81
P A+ S+ G S + KKK A S+ + + +KWYG +R R
Sbjct: 59 PFTAVKAIANSSIGVSLRRRLE-----EKKKEAVENSSRFKSKAQEARNDSKWYGKERPR 113
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
F P + P YLTGE+PGDYG+D GL K F KY +E++HARWAML A G
Sbjct: 114 WFGPIPY----DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGA 169
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVL 194
+IPE F+ G E VW++ G L G TL Y G IP ++ I +++L
Sbjct: 170 LIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLG--IPGLHVAGSQGVIVIAICQVLL 227
Query: 195 VGGAEYYR 202
+ G EY R
Sbjct: 228 MVGPEYAR 235
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 4/114 (3%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLGA G + PE ++ G
Sbjct: 9 SATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNG 68
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYR 202
E VW+K GA +L L+Y GK ++ +V + +++L+G AE YR
Sbjct: 69 FTF-QEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYR 121
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE ++ G
Sbjct: 37 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 96
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 97 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGG 152
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 10/135 (7%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL-SKKPDDFSKYQAYELIHARWA 134
YGP RR FLP+G PE+L G + GD G+DP GL S P D +Y+ EL+H RWA
Sbjct: 176 YGPTRRKFLPDGF--GYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWA 233
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN--TLNYFGK---NIPINLVFAVI 189
MLG G +PEA +FG E VW+K GA L+ L+Y G +I + AVI
Sbjct: 234 MLGVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVI 293
Query: 190 A--EIVLVGGAEYYR 202
A ++VL+GG EY R
Sbjct: 294 AACQLVLMGGPEYAR 308
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG +R +L E P YLTG+ PGDYG+D GLS P+ F + + E+IH RWA
Sbjct: 50 WYGSERVKYLGP---FSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 192 IVLVGGAEYYRI 203
++L+G E YR+
Sbjct: 166 VILMGAVEGYRV 177
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 78/138 (56%), Gaps = 7/138 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PG+YG+D GLS P+ F+K +A E+IH RWA
Sbjct: 3 WYGPDRVKYLGP---FSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWA 59
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 60 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 119
Query: 192 IVLVGGAEYYRITNGFGG 209
++L+G E RI NG G
Sbjct: 120 VILMGLVEGLRI-NGLDG 136
>gi|225690800|gb|ACO06086.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 215
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 73/124 (58%), Gaps = 8/124 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G + PE K G G EAVWFK G + L+Y G NLV A + + +
Sbjct: 104 MLGALGCVFPEILCKNGLKFG-EAVWFKAGPQIFFEGGLDYLGHP---NLVHAQ-SFLPI 158
Query: 195 VGGA 198
+GGA
Sbjct: 159 LGGA 162
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 14/180 (7%)
Query: 32 TSAPGASNPSTFKPVA--LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLL 89
T+ +N S K + + K AA ++S A + + W+G DR +L
Sbjct: 54 TAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPY 113
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
D P++L G PGDYG+D GL K P F K+ +E++HARWAML A G +IPE K
Sbjct: 114 D---YPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEK 170
Query: 150 FGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYR 202
F E+VW++ G L+G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 171 FFGVNFAESVWWRVGYAKLEGDTLDYLG--IPGLHIVGAQGIIVIAICQFLLMVGPEYAR 228
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + + E+ + R AM+ GF + K G
Sbjct: 241 YLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKG 297
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G
Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV 64
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 65 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 120
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 8/141 (5%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGPD G + + P TGE PGDYG+D GLS P+ F +Y+ ELIHAR
Sbjct: 56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARC 111
Query: 134 AMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVI 189
+LGA G + PE ++ G G A+WFK GA + LNY G I N+V +
Sbjct: 112 GLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLA 171
Query: 190 AEIVLVGGAEYYRITNGFGGQ 210
++VL+G E YR+ G G+
Sbjct: 172 VQVVLMGLVEGYRVNGGPAGE 192
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG++ G+S P+ F++ + E+IH+RW
Sbjct: 13 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRW 68
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 69 AMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 127
Query: 191 EIVLVGGAE 199
++VL+G E
Sbjct: 128 QVVLMGFVE 136
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 32 TSAPGASNPSTFKPVA--LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLL 89
T+ +N S K + + K AA ++S A + + W+G DR +L
Sbjct: 54 TAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPY 113
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
D P++L G PGDYG+D GL K P F K+ +E++HARWAML A G +IPE K
Sbjct: 114 D---YPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEK 170
Query: 150 FGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-INLVFA------VIAEIVLVGGAEYYR 202
F E+VW++ G L+G+TL+Y G IP +++V A I + +L+ G EY R
Sbjct: 171 FFGVKFAESVWWRVGYAKLEGDTLDYLG--IPGLHIVGAQGILVIAICQFLLMVGPEYAR 228
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + + E+ + R AM+ GF + K G
Sbjct: 241 YLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKG 297
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 93/164 (56%), Gaps = 16/164 (9%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRS-EIPEYLTGEVPGDY 106
L +KK A SK A++ + + WYG +R P L S + P YL+GE+PGDY
Sbjct: 89 LEERKKLAVQQSSKFKALAQKARKESFWYGEER----PRWLGPISYQYPTYLSGELPGDY 144
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GL++ P F +Y +E++HARWAML A G +IPE + GA E VW++ G
Sbjct: 145 GFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYS 204
Query: 167 LLDGNTLNYFGKNIPINLVFA------VIA--EIVLVGGAEYYR 202
L G+TL+Y G IP L FA VIA + +L+ G EY R
Sbjct: 205 KLKGDTLDYLG--IP-GLHFAGGQGVLVIAFCQAILMVGPEYAR 245
Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
YL G++ PG +DP LSK P F + + E+ + R AM+ GF I A
Sbjct: 258 YLPGDINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAALT 311
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L D PE+LTGE PGDYG+D GL + P F+ Y +E++H RWA
Sbjct: 94 WYGGDRPRWLGPVPYD---YPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWA 150
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 187
ML A G +IPE + FG E VW+K G L G+TL+Y G IP ++
Sbjct: 151 MLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVI 208
Query: 188 VIAEIVLVGGAEYYR 202
I + +L+ G EY R
Sbjct: 209 AICQALLMVGPEYAR 223
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 79/139 (56%), Gaps = 18/139 (12%)
Query: 73 AKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
+KWYGP R R+ P G E+L G + GD G+DP GLSK+ F+KYQ EL+HA
Sbjct: 175 SKWYGPSRPRLPGPLG------SAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHA 228
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFG-------KNIPIN 183
RWAMLG G ++PE G + G E VW+K GA L+ + TLN+ G I
Sbjct: 229 RWAMLGVVGCLVPELLALRGVDLG-EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIG 287
Query: 184 LVFAVIAEIVLVGGAEYYR 202
L+ A A VL+GG EY R
Sbjct: 288 LIAACQA--VLMGGPEYAR 304
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 12/135 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L D PEYLTGE PGDYG+D GL + P F+ Y +E++H RWA
Sbjct: 95 WYGGDRPRWLGPVPYD---YPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 151
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 187
ML A G ++PE + FG E VW+K G L G+ L+Y G IP +V
Sbjct: 152 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLG--IPGFRIAGGQGVVVI 209
Query: 188 VIAEIVLVGGAEYYR 202
I + +L+ G EY R
Sbjct: 210 AICQALLMVGPEYAR 224
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 10/134 (7%)
Query: 75 WYGPDRRIFLPEGLLDRS-EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P L S E P YLTGE+PGDYG+D GL + P KY +E++HARW
Sbjct: 105 WYGEDR----PRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARW 160
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAV 188
AML + G +IPE + GA E VW++ G L G+TL+Y G + + +V
Sbjct: 161 AMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIA 220
Query: 189 IAEIVLVGGAEYYR 202
I + +L+ G EY R
Sbjct: 221 ICQALLMVGPEYAR 234
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 12/135 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG R +L G L R + PE+L GE PGDYG+D GL + P F+ Y +E++H RWA
Sbjct: 90 WYGGARPRWL--GPL-RYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 146
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 187
ML A G ++PE + FG E VW+K G L G+TL+Y G IP ++
Sbjct: 147 MLAALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGIIVI 204
Query: 188 VIAEIVLVGGAEYYR 202
I +++L+ G EY R
Sbjct: 205 AICQVLLMVGPEYAR 219
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
YL G++ PG +DP GLSK P F +++ E+ + R AM+ GF I A
Sbjct: 232 YLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIKNGRLAMVAWIGFYIQAA 283
>gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea glauca]
Length = 151
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYL--GPFS-EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
MLGA G + PE K G G EAVWFK G
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAG 135
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 7/144 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDR-SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 122
+V+P + A +YGP+R ++ +G + ++PEYL GE PGDYG D F L++ P ++++
Sbjct: 14 SVAPDQDARAPYYGPNRPLW--KGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYAR 71
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
+ EL++ RWAMLG G + PE N + G E VWF TGA + ++Y G I
Sbjct: 72 LRTQELMNGRWAMLGITGCLTPELINS-NSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFI 130
Query: 183 N---LVFAVIAEIVLVGGAEYYRI 203
N L ++ + +L+G AEY RI
Sbjct: 131 NAHSLFAVIVVQALLMGLAEYARI 154
>gi|693924|gb|AAA80595.1| chlorophyll a/b binding protein, partial [Solanum tuberosum]
Length = 135
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 165
MLGA G + PE + G G EAVWFK G+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGS 135
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 16/195 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P ++ + SP WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKPKPAR--SGSP-------WYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA+
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVG 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
G + PE + G G E VWFK G+ + L++ G + + A+ A ++VL+
Sbjct: 109 LGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLM 167
Query: 196 GGAEYYRITNGFGGQ 210
G E Y + G G+
Sbjct: 168 GAVEGYHVAGGRLGE 182
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+ WYG +R +L E P +LTGE PGDYG+D GL + P F+ Y +E++H R
Sbjct: 99 SSWYGDERPRWLGP---VPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCR 155
Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLV 185
WAML A G ++PE + FG E VW+K G L G+TL+Y G IP ++
Sbjct: 156 WAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVI 213
Query: 186 FAVIAEIVLVGGAEYYR 202
I + +L+ G EY R
Sbjct: 214 VIAICQALLMVGPEYAR 230
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + E+ + R AM+ GF I A G
Sbjct: 243 YLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 299
>gi|414591310|tpg|DAA41881.1| TPA: hypothetical protein ZEAMMB73_898154 [Zea mays]
Length = 95
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPG+
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGE 95
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 92/187 (49%), Gaps = 21/187 (11%)
Query: 31 RTSAPGASNP--STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL 88
+ + P NP ST A F+ K A AKSK S + K+ GP
Sbjct: 19 KIAKPSKLNPISSTLIVTAGFTMLKHA--AKSK--VSSSTCDRRVKYLGPFS-------- 66
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R AM A G I PE +
Sbjct: 67 ---GEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLS 123
Query: 149 KFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAV-IAEIVLVGGAEYYRITN 205
G G EAVWFK GA + L+Y G + + A+ +++L+G E YRI
Sbjct: 124 VMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIAR 182
Query: 206 GFGGQAS 212
G G+ +
Sbjct: 183 GPLGEVT 189
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A PV+ SP WYGPDR +L E P YLTGE P G P P
Sbjct: 40 ATKAPVSSSP-------WYGPDRVKYLGP---FSGEPPSYLTGEFPVTTGGTPPVCQPDP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IHARWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHARWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YR+ G
Sbjct: 149 NPSLVHAQSILAIWACQVILMGAVEGYRVAGG 180
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 70/132 (53%), Gaps = 26/132 (19%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 19 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 75
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G + PE ++ G G EAVWFK ++A +++L
Sbjct: 76 MLGALGCVFPELLSRNGVKFG-EAVWFKAA--------------------IWA--CQVIL 112
Query: 195 VGGAEYYRITNG 206
+G E YRI G
Sbjct: 113 MGAVEGYRIGGG 124
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFK 162
MLGA G + PE K G G EAVWFK
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFK 133
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 9/117 (7%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAMLGA G ++PE + FG
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYR 202
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGLRIAGGQGIIVIAICQALLMVGPEYAR 115
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAML A G +IPE + FG
Sbjct: 113 DYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVIPELLDLFGI 172
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYR 202
E VW+K G L G+TL+Y G + I ++ I + +L+ G EY R
Sbjct: 173 VHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQALLMVGPEYAR 227
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E P +LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + FG
Sbjct: 40 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGV 99
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYR 202
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 100 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYAR 154
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 82/158 (51%), Gaps = 11/158 (6%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S+ K A + K +A + + + WYG +R +L G L + P YL G PGDY YD
Sbjct: 46 SEYKRAEQQREKELAAA---RDESPWYGEERPKWL--GPLS-YDYPAYLRGGAPGDYAYD 99
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
P L++ D F +Y +EL+HARWAMLGA G IPE G + EA W+ G L
Sbjct: 100 PLQLAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGVSDFLEARWWAVGGAKLQ 159
Query: 170 GNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYR 202
G LNY G + I + I +++L+ G EY R
Sbjct: 160 GEDLNYLGVSGLRIAGGQGIAIIAICQVLLMFGPEYAR 197
>gi|93359558|gb|ABF13305.1| chloroplast chlorophyll a/b binding protein [Phaseolus vulgaris]
Length = 134
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 4 AQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 63
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGFG 208
E VWFK GA + L+Y G + + AV+ ++VL+G +RI NG
Sbjct: 64 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVVGFRI-NGLD 122
Query: 209 G 209
G
Sbjct: 123 G 123
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 12/137 (8%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+ WYG +R +L E P +LTGE PGDYG+D GL + P F+ Y +E++H R
Sbjct: 99 SSWYGDERPRWLGP---VPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCR 155
Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLV 185
WAML A G ++PE + F E VW+K G L G+TL+Y G IP ++
Sbjct: 156 WAMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVI 213
Query: 186 FAVIAEIVLVGGAEYYR 202
I + +L+ G EY R
Sbjct: 214 VIAICQALLMVGPEYAR 230
Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + E+ + R AM+ GF I A G
Sbjct: 243 YLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 299
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 91/181 (50%), Gaps = 13/181 (7%)
Query: 37 ASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFL-PEGLLDRS 92
++ S F P + K++ P + N WYGPDR +L P +
Sbjct: 6 TNSSSVFCPTTFLGQTKSSSFNPLRDVVSLGSHKYNMGNYLWYGPDRVKYLGPFSV---- 61
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDD-FSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ P Y TGE PGDYG+D GLS P+ F+K A E+I+ RWAMLGA G I PE K+
Sbjct: 62 QTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQKWV 121
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGFG 208
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI N F
Sbjct: 122 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI-NRFD 180
Query: 209 G 209
G
Sbjct: 181 G 181
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 73 AKWYGPDRRIFLPEGLLDR----SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
A YG RR FLP+ LL + +P YLTGE+PGD G+DP + + D +K + EL
Sbjct: 1313 ADLYGTTRRKFLPDSLLASLGPSTVVPAYLTGELPGDVGWDPLQMGAQ-RDLTKLREREL 1371
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-----LDGNTLNYFGKNIPIN 183
IH RWAML A G + PE K G P + W+ T L G L Y G+ IP
Sbjct: 1372 IHGRWAMLAAVGVLTPELTAKLGVFGAPGSHWWNTAINFPTEGGLAGAELTYLGETIPFG 1431
Query: 184 LVFAVIAEIVLVGGAEYYR 202
L + I + + AE R
Sbjct: 1432 LFWLPIIHLPVFFVAEMLR 1450
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YG +R FL G L+ E P +L G + GD G+DP L+ K +D +Y+ EL+H RWA
Sbjct: 31 FYGANRVKFL--GDLE-YEYPAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWA 87
Query: 135 MLGAAGFIIPEAFNKFG-ANCGPEAVWFKTGALLLDGNT----LNYFGKNIPINLVFAVI 189
MLG G +PE ++FG AN G E VW+K GA ++ + L + G +I AVI
Sbjct: 88 MLGVVGAAVPETLDRFGVANLG-EPVWWKVGAAKMNSDIALDYLGFSGFHIAGGSGIAVI 146
Query: 190 A--EIVLVGGAEYYR 202
A ++VL+GG EY R
Sbjct: 147 AACQLVLMGGPEYAR 161
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 97 YLTGE--VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G+ PG +DPF S ++F K + E+ H R AM+ A G I + G
Sbjct: 174 YLPGDKDYPGGAPFDPFKFSDDAEEFEKQKVMEIKHCRLAMIAALGCAIQAIVTRQG 230
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 72/135 (53%), Gaps = 15/135 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWA 96
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 97 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 155
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 156 VILMGAVEGYRIAGG 170
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 4/110 (3%)
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G G EAV
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAV 59
Query: 160 WFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG 206
WFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 60 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 109
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 158 AVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRIT 204
VWFK GA + L+Y G + + AV+ ++VL+G E +RI
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 110
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE PGD G+DPFGL+K P DF+K++ E+ H RWAMLG G ++PE F G
Sbjct: 158 AEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLG 217
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGFG 208
P W+ A + + + L+Y G + N+ F ++ ++L+G E +R
Sbjct: 218 IAQLP--AWYDA-ATVANTSNLDYLGNPNLVHASNVSFIALSTLLLMGPVEAWRWNGALA 274
Query: 209 GQA 211
+A
Sbjct: 275 SEA 277
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 6/96 (6%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE PGD G+DP GL+K P+DF+K + E+ H RWAMLG G ++PE F G
Sbjct: 367 AEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLG 426
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 187
P W++ GA+ G +L+Y G NLV A
Sbjct: 427 IAQLP--AWYEAGAVANTG-SLDYLGNP---NLVHA 456
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 11/133 (8%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YG R FL + E P +L G + GD G+DP GL K DD + + EL+HARWAM
Sbjct: 158 YGARRVKFLGDA---EYEYPAHLDGSLCGDAGFDPLGLGK--DDLPRMRELELLHARWAM 212
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFGK---NIPINLVFAVIA- 190
LG G +PE ++G E VW+K GA ++ + +L+YFG +I A+IA
Sbjct: 213 LGIVGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAA 272
Query: 191 -EIVLVGGAEYYR 202
++VL+GG EY R
Sbjct: 273 CQVVLMGGPEYAR 285
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 97 YLTGE--VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
YL G+ PG +DPF +S D+F K + E+ H R AM+ G A F
Sbjct: 298 YLPGDKDYPGGAPFDPFKISDDADEFEKQKVMEIKHGRLAMIAMLGV----AAQAFVTRA 353
Query: 155 GP 156
GP
Sbjct: 354 GP 355
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
W+G R ++L G L ++ P++L+GE+PGDYG+DP GL + P +Y EL+HARWA
Sbjct: 123 WFGAARPLWL--GPLS-TQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWA 179
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTG-ALLLDGNTLNYFGK---NIPINLVFAVIA 190
MLGA G ++PE G+ E W+ G A L G L Y G + A+IA
Sbjct: 180 MLGALGAVVPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQGVAIIA 239
Query: 191 --EIVLVGGAEYYR 202
+++L+ G EY R
Sbjct: 240 FCQVLLMFGPEYAR 253
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE + G G EAVW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVW 59
Query: 161 FKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG 206
FK G+ + L+Y G ++ ++ +++L+G E YRI G
Sbjct: 60 FKAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGG 108
>gi|117661756|gb|ABK55666.1| chloroplast chlorophyll a/b-binding protein [Cucumis sativus]
Length = 137
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFK 59
Query: 163 TGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 60 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 106
>gi|193872610|gb|ACF23033.1| ST140, partial [Eutrema halophilum]
Length = 141
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L G E P YLTGE PG+YG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYL--GPFS-GEPPSYLTGEFPGNYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
MLGA G + PE + G G +AVWFK G+ +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-KAVWFKAGSQIFS 140
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 78/176 (44%), Gaps = 26/176 (14%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
SS + S GA+ S L +K +P S+ V V V + PDR ++ P
Sbjct: 19 SSQINGSTVGATKASFLSGKRLTVRKHTSPVVASRSVTVCAVAD-------PDRPLWFPG 71
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
S P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG IPE
Sbjct: 72 -----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEF 126
Query: 147 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
K G P W+ G L +T F I E++ +G AE R
Sbjct: 127 LTKIGILNTPS--WYDAGKLEYFTDTTTLF------------IIELIFIGWAEGRR 168
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 29/130 (22%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 13 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 68
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 193
AMLGA G + PE +K G FG+ + I ++A ++V
Sbjct: 69 AMLGALGCVFPEILSKNGVK----------------------FGEAVCILAIWA--CQVV 104
Query: 194 LVGGAEYYRI 203
L+G E YR+
Sbjct: 105 LMGFVEGYRV 114
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 89/202 (44%), Gaps = 34/202 (16%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS ASST AA + ++ A + S G K +A P S
Sbjct: 1 MASACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLRVSKFIA---------PVGS 51
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ VAVS V + PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 52 RSVAVSAVAAD------PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESL 100
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 101 KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF---- 154
Query: 181 PINLVFAVIAEIVLVGGAEYYR 202
+ E+VL+G AE R
Sbjct: 155 --------VIELVLIGWAEGRR 168
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE K G G EAVWFK
Sbjct: 4 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFK 62
Query: 163 TGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG 206
GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 63 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGG 109
>gi|6440899|dbj|BAA78594.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 155
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 64/120 (53%), Gaps = 9/120 (7%)
Query: 57 PAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK 116
PAK K V+ P A+WYGPDR +L P YLTGE PGDYG+D GLS
Sbjct: 45 PAK-KTVSKKPSGPAGAEWYGPDRPKWLGPFF---QNTPSYLTGEFPGDYGWDTAGLSAT 100
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
D KY+ E+IH RW MLGA G ++PE A E VWFK GA + L+Y
Sbjct: 101 -GDLRKYRTIEVIHGRWPMLGALGCLVPELIKGDIA----EPVWFKAGAQIFSEGGLDYL 155
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 11/201 (5%)
Query: 9 TPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPV 68
+P +S + G P ++ S+ + S +A +S AA S AV
Sbjct: 1176 SPQSSKASAGTEGRPRDLVSSSMNANAATSLGGDQGSMAYWSNGSAALVVTS---AVRNT 1232
Query: 69 NEELAKWYGPDRRIFLPEGLLD---RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+ YG R+ FLP LL+ + +P YLTGE+PGD G+DP + + D K +
Sbjct: 1233 GARVDDLYGERRKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQ-RDIMKLRE 1291
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT----LNYFGKNIP 181
ELIH RWAML A G ++PE+ + P W+ T N+ L Y G+NIP
Sbjct: 1292 RELIHGRWAMLAAIGVLVPESTARLSLFGTPGQHWWNTHIEWTGTNSGIPELTYLGENIP 1351
Query: 182 INLVFAVIAEIVLVGGAEYYR 202
+ + I + L AE R
Sbjct: 1352 WGVFWLPIIHLPLFFVAEMLR 1372
>gi|22003726|gb|AAM88863.1|AF526508_1 A-B binding protein [Vicia faba]
Length = 136
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 46 WYGPDRPKYL--GPFS-EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAV 159
MLGA G PE K G G V
Sbjct: 103 MLGALGCTFPELLEKNGVKFGEATV 127
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
+ E+IH+RWAMLGA G + PE + G G EAVW +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWVQ 132
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA-- 152
P +LTG + GD G+DP L K P+ ++ EL+HARWAML G +PEA + GA
Sbjct: 188 PPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVPEALSIAGALP 247
Query: 153 --NCGPEAVWFKTGALLLDGNTLNYFGKN---IPINLVFAVIA--EIVLVGGAEYYR 202
E VW+K GA L+G +LNY G I AVIA + VL+GG EY R
Sbjct: 248 EGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLMGGPEYAR 304
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
YL G+ PG +DPFGLS D F++ + E+ H R AM+ G
Sbjct: 317 YLPGDANYPGGAPFDPFGLSDDADRFARQKVIEIEHGRLAMVAMLG 362
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 87/163 (53%), Gaps = 14/163 (8%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
L KK A SK A++ + + WYG +R +L D P YLTGE+PGDYG
Sbjct: 80 LEESKKVAVKESSKFQALTAKARKESLWYGEERPRWLGPIPYD---YPAYLTGELPGDYG 136
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
+D GLSK F +Y +E++HARWAML A G + PE + GA E VW++ G
Sbjct: 137 FDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVLDLSGAFHFIEPVWWRVGYSK 196
Query: 168 LDGNTLNYFGKNIPINLVFA--------VIAEIVLVGGAEYYR 202
L G+TL+Y G IP L FA I + +L+ G EY R
Sbjct: 197 LKGDTLDYLG--IP-GLHFAGSQGVLVIAICQALLMVGPEYAR 236
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 69/135 (51%), Gaps = 20/135 (14%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F A
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETF-------------A 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 94 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 152
Query: 192 IVLVGGAEYYRITNG 206
+VL+G E YR+ G
Sbjct: 153 VVLMGLIEGYRVGGG 167
>gi|212721622|ref|NP_001132387.1| light harvesting complex mesophyll7 [Zea mays]
gi|194694246|gb|ACF81207.1| unknown [Zea mays]
Length = 185
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPE 145
MLGA G + PE
Sbjct: 107 MLGALGCVFPE 117
>gi|413933709|gb|AFW68260.1| hypothetical protein ZEAMMB73_510715 [Zea mays]
Length = 144
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WY PDR P+ L SE YLTGE PGDYG+D GLS + F++ + E+IH+ W
Sbjct: 44 WYDPDR----PKYLAPFSEQTSSYLTGEFPGDYGWDTAGLSADHETFARNRELEVIHSWW 99
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
AMLGA G + PE K G E VWFK GA + L+Y
Sbjct: 100 AMLGALGCVFPEVLAKNDVKFG-EVVWFKAGAQIFSEGGLDYL 141
>gi|169261108|gb|ACA52202.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 118
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 38 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 94
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAV 159
MLGA G + PE + G G EAV
Sbjct: 95 MLGALGCVFPELLARNGVKFG-EAV 118
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Query: 40 PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
PS L K KA+ PA S+ A+ V A P+R I+ P S PE+L
Sbjct: 22 PSFLGGKKLRLKNKASVPAVSRSAAL--VRAVAAD---PERPIWFPG-----STPPEWLD 71
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
G +PGD+G+DP GLS PD EL+H RWAMLGAAG IPE K G P
Sbjct: 72 GSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS-- 129
Query: 160 WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
W+ G YF + +V E++L+G AE R
Sbjct: 130 WYTAGE-------QEYFTDKTTLFVV-----ELILIGWAEGRR 160
>gi|2570511|gb|AAB82141.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 304
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 5/83 (6%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+++EL WYGPDR +L G ++ P YL GE PGDYG+D GLS P+ F++ +A E
Sbjct: 43 MSKEL--WYGPDRVNYL--GPFS-AQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALE 97
Query: 128 LIHARWAMLGAAGFIIPEAFNKF 150
+IH RWAMLGA G I PE K+
Sbjct: 98 VIHGRWAMLGALGCITPEVLEKW 120
>gi|86169487|gb|ABC86983.1| chlorophyll a/b binding protein [Brassica napus]
Length = 75
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 3 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 62
Query: 153 NCGPEAVWFKTGA 165
G EAVWFK G+
Sbjct: 63 KFG-EAVWFKAGS 74
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Query: 40 PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
PS L K KA+ PA S+ A+ V A P+R I+ P S PE+L
Sbjct: 16 PSFLGGKKLRLKNKASVPAVSRSAAL--VRAVAAD---PERPIWFPG-----STPPEWLD 65
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
G +PGD+G+DP GLS PD EL+H RWAMLGAAG IPE K G P
Sbjct: 66 GSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS-- 123
Query: 160 WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
W+ G YF + +V E++L+G AE R
Sbjct: 124 WYTAG-------EQEYFTDKTTLFVV-----ELILIGWAEGRR 154
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F+K + E+IH RWAMLGA G I PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGVKFG-EAVWFKAG 59
Query: 165 ALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNG 206
+ + L+Y G I+ + A+ A +++L+G E YRI G
Sbjct: 60 SQIFSEGGLDYLGNPTLIHAQSILAIWACQVILMGAVEGYRIAGG 104
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 103 PGDYGYDP-FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWF
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWF 59
Query: 162 KTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
K GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 60 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 107
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S PE+L G +PGD+G+DP GLS PD EL+H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLG 104
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----ELILIGW 150
Query: 198 AEYYR 202
AE R
Sbjct: 151 AEGRR 155
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 87/202 (43%), Gaps = 34/202 (16%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS ASST AA V+ + +S S T K L ++ +
Sbjct: 1 MASACASSTIAA-------------VAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYST 47
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
P A S +A PDR ++ P S P +L G +PGD+G+DP GL+ P+
Sbjct: 48 TPTARSATTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESL 100
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
Q EL+H RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 101 RWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF---- 154
Query: 181 PINLVFAVIAEIVLVGGAEYYR 202
I E+VL+G AE R
Sbjct: 155 --------IVELVLIGWAEGRR 168
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE K G G EAVWFK
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKA 59
Query: 164 GALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG 206
GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 60 GAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGG 105
>gi|169261106|gb|ACA52201.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata subsp.
hookeri]
Length = 119
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPE 145
MLGA G + PE
Sbjct: 108 MLGALGCVFPE 118
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 165 ALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 60 SQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGG 104
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 88/202 (43%), Gaps = 33/202 (16%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS+ ASS AA ++ SS S GA+ S L KK AP A +
Sbjct: 1 MASVCASSAMAAV--------ATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGT 52
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ VS + P+R ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 53 RSFTVSAAAAD------PNRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETL 101
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
E++H RWAMLGAAG IPE K G P W+ G L YF
Sbjct: 102 KWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGE-------LEYFTDKT 152
Query: 181 PINLVFAVIAEIVLVGGAEYYR 202
+ I E++ +G AE R
Sbjct: 153 TL-----FIVEMIFIGWAEGRR 169
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----ELILIGW 150
Query: 198 AEYYR 202
AE R
Sbjct: 151 AEGRR 155
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----ELILIGW 150
Query: 198 AEYYR 202
AE R
Sbjct: 151 AEGRR 155
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 165 ALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 60 SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 104
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 75/139 (53%), Gaps = 18/139 (12%)
Query: 73 AKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
+KWYG R R+ P G ++L GE GD G+DP L K P F++++ EL+HA
Sbjct: 53 SKWYGASRPRLPGPLG------GAQHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHA 106
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFG-------KNIPIN 183
RWAMLG G ++PE G G E VW+K GA L+ + TLN+ G I
Sbjct: 107 RWAMLGFVGCMVPELLALRGVELG-EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIG 165
Query: 184 LVFAVIAEIVLVGGAEYYR 202
L+ A A VL+GG EY R
Sbjct: 166 LIAACQA--VLMGGPEYAR 182
>gi|428230868|gb|AFY99056.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 107
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G G EAVWFK
Sbjct: 7 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKA 65
Query: 164 GALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYR 202
G+ + L+Y G + + A+ A ++VL+G E YR
Sbjct: 66 GSQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYR 107
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRI 82
P A+ S G S S + KKAA SK A++ + + WYG +R
Sbjct: 62 PFTAVKAIANSPLGESLQSRME-----ENKKAAVKNSSKFKALAEKAKNESLWYGEERPR 116
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
+L D P YLTGE+PGDYG+D GL K P F KY +E++HARWAML A G +
Sbjct: 117 WLGPIPYD---YPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGAL 173
Query: 143 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLV 195
+PE + GA E VW++ G L G+TL+Y G IP ++ I + +L+
Sbjct: 174 LPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLG--IPGFHFAGSQGVIVIAICQALLM 231
Query: 196 GGAEYYR 202
G EY R
Sbjct: 232 VGPEYAR 238
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ Q EL+H RWAMLG
Sbjct: 64 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLG 118
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G L +T F I E++ +G
Sbjct: 119 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELIFIGW 164
Query: 198 AEYYR 202
AE R
Sbjct: 165 AEGRR 169
>gi|108709620|gb|ABF97415.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 118
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRPKYL--GPFS-EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNK 149
MLGA G + PE ++
Sbjct: 104 MLGALGCVFPEILSR 118
>gi|412991092|emb|CCO15937.1| putative lycopene beta cyclase [Bathycoccus prasinos]
Length = 1593
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 75/148 (50%), Gaps = 16/148 (10%)
Query: 73 AKWYGPDRRIFLPEGLL----DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
A YG DR FLP+ ++ + +P +LTG +PGD G+DP + D K++ EL
Sbjct: 1387 ADLYGNDRIKFLPKSIINLPGENVIVPPHLTGGLPGDIGFDPLKFGAQ-SDLLKFREREL 1445
Query: 129 IHARWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKTGAL--LLDGNTLNYFGKNIP---- 181
I+ RWAML A G ++PE KFG G + W+ T + + DG L Y G IP
Sbjct: 1446 INGRWAMLAAIGVLLPEFLFKFGLYGEGTDQHWWSTKIIHDVADGWQLTYMGSEIPWGLF 1505
Query: 182 ----INLVFAVIAEIVLVGGAEYYRITN 205
I+L +AE++ G E R +
Sbjct: 1506 WLPIIHLPLMFVAEMLRTGKFEIERFST 1533
>gi|16225450|gb|AAL15892.1|AF417304_1 putative chlorophyll-A-B-binding protein [Castanea sativa]
Length = 120
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G + P YLTGE P DYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYL--GPFS-EQTPSYLTGEFPEDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNK 149
MLGA G + PE +K
Sbjct: 106 MLGALGCVFPEILSK 120
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD +
Sbjct: 54 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 104
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
ELIH+RWAML G IIPE + G F D + YF + +
Sbjct: 105 QAELIHSRWAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-- 153
Query: 185 VFAVIAEIVLVGGAEYYR 202
+A++VL+G AE R
Sbjct: 154 ---FVAQMVLMGWAEGRR 168
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD +
Sbjct: 54 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 104
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
ELIH+RWAML G IIPE + G F D + YF + +
Sbjct: 105 QAELIHSRWAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-- 153
Query: 185 VFAVIAEIVLVGGAEYYR 202
+A++VL+G AE R
Sbjct: 154 ---FVAQMVLMGWAEGRR 168
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD +
Sbjct: 54 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 104
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
ELIH+RWAML G IIPE + G F D + YF + +
Sbjct: 105 QAELIHSRWAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-- 153
Query: 185 VFAVIAEIVLVGGAEYYR 202
+A++VL+G AE R
Sbjct: 154 ---FVAQMVLMGWAEGRR 168
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
GLS P F++Y+ E+IHARWAMLGA G I PE K G G EAVWFK GA +
Sbjct: 2 GLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFQDG 60
Query: 172 TLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
LNY G + + A +A +++L+G AE YR G
Sbjct: 61 GLNYLGNESLVHAQSILATLAVQVLLMGAAESYRANGG 98
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S P +L G +PGD+G+DPFGL P+ EL+H RWAMLG
Sbjct: 55 PDRPIWFPG-----SVPPPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 110 AAGIFIPEFLTKIGILSTPS--WYTAGEQQYFTDTTTLF------------IIELILIGW 155
Query: 198 AEYYR 202
AE R
Sbjct: 156 AEGRR 160
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 103
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----ELILIGW 149
Query: 198 AEYYR 202
AE R
Sbjct: 150 AEGRR 154
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 68/152 (44%), Gaps = 26/152 (17%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K++AA +S V V E PDR ++ P S P +L G +PGD+G+DP
Sbjct: 40 KERAAIGGRSMGTTVCAVAE-------PDRPLWFPG-----STPPPWLDGTLPGDFGFDP 87
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GL P+ EL+H RWAMLGAAG IPE K G P W+ G L
Sbjct: 88 LGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPS--WYSAGELEYFT 145
Query: 171 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
+T F I E+ +G AE R
Sbjct: 146 DTTTLF------------IVELFFIGWAEGRR 165
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 81/181 (44%), Gaps = 27/181 (14%)
Query: 26 VSSAVRTSA----PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
VS++ T+A PGA+ S+F A S + A+S S A PDR
Sbjct: 4 VSASSSTTAVAALPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRAAA----PDRP 59
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
I+ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG
Sbjct: 60 IWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGI 114
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYY 201
IPE K G P W+ G +T F I E++L+G AE
Sbjct: 115 FIPEFLTKIGILNTPS--WYTAGEQQYFTDTTTLF------------IIELILIGWAEGR 160
Query: 202 R 202
R
Sbjct: 161 R 161
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 19 MLGNPLNVSSAVRTSA-PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
MLG N SS +A PGA S+F A S + A+S S A
Sbjct: 1 MLGLVSNSSSFTAVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRAAA---- 56
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S P +L G +PGD+G+DP GL P+ +L+H RWAMLG
Sbjct: 57 PDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLG 111
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 112 AAGIFIPEFLTKIGILNTPS--WYTAGEHQYFTDTTTLF------------IIELILIGW 157
Query: 198 AEYYR 202
AE R
Sbjct: 158 AEGRR 162
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 165 ALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGFGG 209
A + L+Y G + + AV+ ++V++G E +RI NG G
Sbjct: 61 AQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRI-NGLDG 107
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+D GLS P+ + + EL+HARWAMLGA G ++PE +
Sbjct: 37 PSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHARWAMLGALGSLLPELLATYAGTP 96
Query: 155 GPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG 206
E VWFK GA + L+Y G + + A++ +++L+G +E YR+ G
Sbjct: 97 LLEPVWFKAGAQIFSPGGLDYLGNPSLVHAQSILAILGFQVLLMGLSEGYRLAGG 151
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 27/182 (14%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
++ VR + + PS VA + +A + VS V E L GPDR ++
Sbjct: 11 CSIQPRVRAALRAPTLPSQNAAVARMAGHRAG----ATKGGVSAVCEPL----GPDRPLW 62
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
P S P +L G +PGD+G+DP GL P+ + EL+H+RWAML AAG ++
Sbjct: 63 FPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILV 117
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 203
PE K+G F +D +YF P L ++++ L+G AE R
Sbjct: 118 PEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTL---FVSQMALMGWAEGRRW 163
Query: 204 TN 205
+
Sbjct: 164 AD 165
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 165 ALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGFGG 209
A + L+Y G + + AV+ ++VL+G E +RI NG G
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGLDG 107
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 86/203 (42%), Gaps = 34/203 (16%)
Query: 1 MASLAASSTPAA-SIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK 59
MAS+ ASS AA SI + + + +T S ++F KK P
Sbjct: 1 MASVCASSAIAAVSISSSRQV-------LSQKTGFLVGSTKASFLSGKKLRLKKYTAPTA 53
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
++ V V + PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 54 ARSVTVCVAAD-------PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPET 101
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
EL+H RWAMLGAAG IPE K G P W+ G L +T F
Sbjct: 102 LRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF--- 156
Query: 180 IPINLVFAVIAEIVLVGGAEYYR 202
I E+ +G AE R
Sbjct: 157 ---------IVELFFIGWAEGRR 170
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 56 PDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 110
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 111 AAGIFIPEFLTKIGILNTPS--WYTAGEQQYFTDTTTLF------------IIELILIGW 156
Query: 198 AEYYR 202
AE R
Sbjct: 157 AEGRR 161
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 64 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 118
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 198
AG IPE K G P W+K G YF + I E++L+ A
Sbjct: 119 AGIFIPELLTKIGILNTPS--WYKAG-------DATYFADQGTL-----FIVELLLMAWA 164
Query: 199 EYYR 202
E R
Sbjct: 165 ESRR 168
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L GPDR ++ P S P +L G +PGD+G+DP GL P+ +
Sbjct: 13 VSAVCEPL----GPDRPLWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFA 63
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
EL+H+RWAML AG ++PE K+G F +D +YF P L
Sbjct: 64 QAELMHSRWAMLAVAGILVPEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTL 112
Query: 185 VFAVIAEIVLVGGAEYYRITN 205
++++ L+G AE R +
Sbjct: 113 ---FVSQMALMGWAEGRRWAD 130
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S PE+L G +PGD+G+DP GLS P+ E++H RWAMLG
Sbjct: 49 PERPIWFP-----GSTPPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLG 103
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----ELILIGW 149
Query: 198 AEYYR 202
AE R
Sbjct: 150 AEGRR 154
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVA---VSPVNEELAKWYGPDR 80
LN +S+ +S P + K +L K + K + A VS V E L PDR
Sbjct: 3 LNFASSSLSSLPTRTRDKPQK--SLLGKIEKCQAVKVRVNATKGVSSVCEPLP----PDR 56
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
++ P S PE+L G +PGD+G+DP GL P+ + ELIH RWAML AAG
Sbjct: 57 PLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 200
+IPE + G F D T YF P L + +++L+G E
Sbjct: 112 ILIPEWLERLG---------FIDNFNWFDAGTREYFAD--PTTL---FVVQLILMGWIEG 157
Query: 201 YR 202
R
Sbjct: 158 RR 159
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVA---VSPVNEELAKWYGPDR 80
LN +S+ +S P + K +L K + K + A VS V E L PDR
Sbjct: 3 LNFASSSLSSLPTRTRDKPQK--SLLGKIEKCQAVKVRVNATKGVSSVCEPLP----PDR 56
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
++ P S PE+L G +PGD+G+DP GL P+ + ELIH RWAML AAG
Sbjct: 57 PLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 200
+IPE + G F D T YF P L + +++L+G E
Sbjct: 112 ILIPEWLERLG---------FIDNFNWFDAGTREYFAD--PTTL---FVVQLILMGWIEG 157
Query: 201 YRITN 205
R +
Sbjct: 158 RRWAD 162
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++ +G
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELIFIGW 162
Query: 198 AEYYR 202
AE R
Sbjct: 163 AEGRR 167
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 13 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 67
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 198
AG IPE K G P W+K G YF + I E++L+ A
Sbjct: 68 AGIFIPELLTKIGILNTPS--WYKAG-------DATYFADQGTL-----FIVELLLMAWA 113
Query: 199 EYYR 202
E R
Sbjct: 114 ESRR 117
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H RWAMLG
Sbjct: 61 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLG 115
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++ +G
Sbjct: 116 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELIFIGW 161
Query: 198 AEYYR 202
AE R
Sbjct: 162 AEGRR 166
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H RWAMLG
Sbjct: 61 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLG 115
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++ +G
Sbjct: 116 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELIFIGW 161
Query: 198 AEYYR 202
AE R
Sbjct: 162 AEGRR 166
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 27/135 (20%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG++ GLS P+ F+K + E+IH+RWA
Sbjct: 33 WYGPDRVKYLGPFF---GEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVIHSRWA 89
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
M F++ WFK + + L+Y G + + A+ A +
Sbjct: 90 M-----------FDR----------WFKARSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 128
Query: 192 IVLVGGAEYYRITNG 206
++L+G E YRI G
Sbjct: 129 VILMGAVEGYRIAGG 143
>gi|449527935|ref|XP_004170963.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like, partial [Cucumis sativus]
Length = 117
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFI 142
MLGA G +
Sbjct: 106 MLGALGCV 113
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 51 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 105
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 106 AAGIFIPELLTKIGILNTPS--WYTAGEQTYFADTTTLF------------IVELILIGW 151
Query: 198 AEYYR 202
AE R
Sbjct: 152 AEGRR 156
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD +
Sbjct: 53 VSSVCEPLP----PDRPLWFPG-----SAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 103
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
ELIH+RWAML G +IPE + G F + + YF + +
Sbjct: 104 QAELIHSRWAMLAVTGILIPECLERLG---------FIENFSWYEAGSREYFADSTTL-- 152
Query: 185 VFAVIAEIVLVGGAEYYR 202
+A++VL+G AE R
Sbjct: 153 ---FVAQMVLMGWAEGRR 167
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
++ VR + + PS VA + +A + VS V E L GPDR ++
Sbjct: 11 CSIQPRVRAALRAPTLPSQNAAVARMAGHRAG----ATKGGVSAVCEPL----GPDRPLW 62
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
P S P +L G +PGD+G+DP GL P+ + EL+H+RWAML AG ++
Sbjct: 63 FPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILV 117
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 203
PE K+G F +D +YF P L ++++ L+G AE R
Sbjct: 118 PEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTL---FVSQMALMGWAEGRRW 163
Query: 204 TN 205
+
Sbjct: 164 AD 165
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
+ S KK + P A V +A PDR ++ P S P +L G +PGD+
Sbjct: 33 SFLSGKKLRLKKYTAPTAARSVTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDF 85
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+DP GL P+ EL+H RWAMLGAAG IPE K G P W+ G L
Sbjct: 86 GFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEL 143
Query: 167 LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
+T F I E+ +G AE R
Sbjct: 144 EYFTDTTTLF------------IVELFFIGWAEGRR 167
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E+V +G
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVFIGW 162
Query: 198 AEYYR 202
AE R
Sbjct: 163 AEGRR 167
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 53 PNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 107
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 108 AAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF------------IIELILIGW 153
Query: 198 AEYYR 202
AE R
Sbjct: 154 AEGRR 158
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E+V +G
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVFIGW 162
Query: 198 AEYYR 202
AE R
Sbjct: 163 AEGRR 167
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE+PGDY +D GL + P + KY +E++HARW L +IP+ N GA
Sbjct: 88 PSYLTGEMPGDYDFDIVGLGQDPVELXKYFNFEILHARWVTLAFVSAVIPKILNLLGAVH 147
Query: 155 GPEAVWFKTGALLLDGNTLNYF 176
E VW++ G L NTL+Y
Sbjct: 148 FVEPVWWRAGYSKLKVNTLDYL 169
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ EL+H RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLG 117
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G L +T F I E+ +G
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELFFIGW 163
Query: 198 AEYYR 202
AE R
Sbjct: 164 AEGRR 168
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P YL G +PG +G+DPFGL P + ++Q EL+H+RWAM G A
Sbjct: 29 RVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVA 87
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 199
G + GA + W++ ++G Y G +P NL + E V + GAE
Sbjct: 88 GAL--------GAELLGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIAGAE 139
Query: 200 YYR 202
R
Sbjct: 140 AQR 142
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 53 PNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 107
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 108 AAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF------------IIELILIGW 153
Query: 198 AEYYR 202
AE R
Sbjct: 154 AEGRR 158
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 48 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 102
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 103 AAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELILIGW 148
Query: 198 AEYYR 202
AE R
Sbjct: 149 AEGRR 153
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S PE+L G +PGD+G+DP GL +P+ + E++H RWAMLGAAG IPE K G
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIG 127
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
P W+ G YF + +V E++ +G AE R
Sbjct: 128 ILNTPS--WYTAG-------EQTYFADQTTLFIV-----ELLFMGWAEGRR 164
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F++ + E+IH+RWAMLGA G + PE +K G G EAVWFK G+
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQ 59
Query: 167 LLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 60 IFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGG 102
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 53 PNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 107
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F I E++L+G
Sbjct: 108 AAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF------------IIELILIGW 153
Query: 198 AEYYR 202
AE R
Sbjct: 154 AEGRR 158
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++ P S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGA
Sbjct: 64 DRPLWFPG-----SQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 118
Query: 139 AGFIIPEAFNKFG 151
AG IPEA K G
Sbjct: 119 AGIFIPEALTKAG 131
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ EL+H RWAMLG
Sbjct: 74 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLG 128
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G L +T F I E+ +G
Sbjct: 129 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELFFIGW 174
Query: 198 AEYYR 202
AE R
Sbjct: 175 AEGRR 179
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+ VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
+ EL+HARWAML AG ++PE F G W+ D + YF
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLG--LIQNFSWY-------DAGSREYFAD 144
Query: 179 NIPINLVFAVIAEIVLVGGAEYYRITN 205
P L+ A +A + V G + + N
Sbjct: 145 --PTTLLVAQLALMGWVEGRRWADLVN 169
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 23/141 (16%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L GPDR ++ P + P +L G +PGD+G+DP GL +P+ +
Sbjct: 56 VSAVCEPL----GPDRPVWFPG-----TSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFA 106
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
EL+H+RWAML AG +IPE K+G E W+ G YF P L
Sbjct: 107 QAELMHSRWAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTL 155
Query: 185 VFAVIAEIVLVGGAEYYRITN 205
IA++ L+G AE R +
Sbjct: 156 ---FIAQMALMGWAEGRRWMD 173
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F KFG
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 APQ--WYDAG 130
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 14/108 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
PE+L G +PGD+G+DP GLS P+ EL+H+RWAMLGAAG IPE K G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
P W+ G +T F I E+V +G AE R
Sbjct: 61 TPS--WYTAGEQEYFTDTTTLF------------IVELVFIGWAEGRR 94
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+ VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
+ EL+HARWAML AG ++PE F G W+ D + YF
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLG--LIQNFSWY-------DAGSREYFAD 144
Query: 179 NIPINLVFAVIAEIVLVGGAEYYRITN 205
P L+ A +A + V G + + N
Sbjct: 145 --PTTLLVAQLALMGWVEGRRWADLVN 169
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 46 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 100
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G +T F + E++L+G
Sbjct: 101 AAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------VVELILIGW 146
Query: 198 AEYYR 202
AE R
Sbjct: 147 AEGRR 151
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLGA
Sbjct: 64 DRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGA 118
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 198
AG IPE K G P W+ G +T F I E++L+G A
Sbjct: 119 AGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF------------IIELILIGWA 164
Query: 199 EYYR 202
E R
Sbjct: 165 EGRR 168
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 117
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G L +T F + E+ +G
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------VVELFFIGW 163
Query: 198 AEYYR 202
AE R
Sbjct: 164 AEGRR 168
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 24/169 (14%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPV--AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
+P KP A + P ++ VS V E L GPDR I+ P S P
Sbjct: 26 SPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPL----GPDRPIWFPG-----SSPPP 76
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGD+G+DP GL +P+ + EL+H RWAML AAG ++P+ ++G
Sbjct: 77 WLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG----- 131
Query: 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
+ G D + YF P L ++++ L+G AE R +
Sbjct: 132 ---FIDAGFSWFDAGSREYFAD--PWTL---FVSQMALMGWAEGRRWAD 172
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 24/169 (14%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPV--AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
+P KP A + P ++ VS V E L GPDR I+ P S P
Sbjct: 26 SPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPL----GPDRPIWFPG-----SSPPP 76
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGD+G+DP GL +P+ + EL+H RWAML AAG ++P+ ++G
Sbjct: 77 WLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG----- 131
Query: 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
+ G D + YF P L ++++ L+G AE R +
Sbjct: 132 ---FIDAGFSWFDAGSREYFAD--PWTL---FVSQMALMGWAEGRRWAD 172
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 86/203 (42%), Gaps = 28/203 (13%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVAL-FSKKKAAPPAK 59
MAS AA ++S+ A ++ + + + GA+ S A+ + KAA P +
Sbjct: 1 MASGAAVVCASSSVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRR 60
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+ V E W+ + P +L G +PGD+G+DP GL P+
Sbjct: 61 AAVTVSQAVQTERPLWFPGNTP-------------PPWLDGSLPGDFGFDPLGLGSDPET 107
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
EL+H RWAMLGAAG IPE K G P W+ G L YF
Sbjct: 108 LKWMVQAELVHCRWAMLGAAGIFIPELCTKLGILNTPS--WYTAG-------ELEYFTDK 158
Query: 180 IPINLVFAVIAEIVLVGGAEYYR 202
+ +V E++ +G AE R
Sbjct: 159 TTLFVV-----EMIFLGWAEGRR 176
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 74 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 128
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G L +T F + E+ +G
Sbjct: 129 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------VVELFFIGW 174
Query: 198 AEYYR 202
AE R
Sbjct: 175 AEGRR 179
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 20/142 (14%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWL 100
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
EL+HARWAMLG +G +IPE K G W+ G ++ YF P
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFAD--PTT 149
Query: 184 LVFAVIAEIVLVGGAEYYRITN 205
L +A + V G + I N
Sbjct: 150 LFIVQLALMGWVEGRRWADIVN 171
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 24/154 (15%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
K +A PA +KPV+ + KWY ++ P YL G +PGDYGYDP
Sbjct: 26 KASAKPAGAKPVSTVVRADLGKKWY-------------TGAKPPAYLDGSMPGDYGYDPL 72
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
+ P+ YQ E+ + RWAM+G AG + +A +FG + P+ W++ GA+ +
Sbjct: 73 RMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISDLPD--WYEAGAVAQASS 130
Query: 172 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
P +L + EI + E +RI+
Sbjct: 131 ---------PFDLQTLIAIEIFVFATVEGFRIST 155
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++ P S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGA
Sbjct: 1 DRPLWFP-----GSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 55
Query: 139 AGFIIPEAFNKFG 151
AG IPEA K G
Sbjct: 56 AGIFIPEALTKAG 68
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 120 APQ--WYDAG 127
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G + +T F I E+ +G
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLF------------IVELFFIGW 162
Query: 198 AEYYR 202
AE R
Sbjct: 163 AEGRR 167
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
AAG IPE K G P W+ G + +T F I E+ +G
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLF------------IVELFFIGW 162
Query: 198 AEYYR 202
AE R
Sbjct: 163 AEGRR 167
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + PD+ +++ ELIH RWAML G +IPEA N
Sbjct: 58 PAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIPEALGL--GNW 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRI 203
W T G Y G +P + +IA E V + E RI
Sbjct: 116 VEAQQWAAT-----PGGQATYLGTPVPWGTLPVIIAIEFVAIAFVESRRI 160
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 APQ--WYDAG 130
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGD+G+DPFGL PD + ELIH+RWAML G IIPE + G
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLG----- 132
Query: 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
F D + YF + + +A++VL+G AE R
Sbjct: 133 ----FIENFSWYDAGSREYFADSTTL-----FVAQMVLMGWAEGRR 169
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 25/148 (16%)
Query: 55 APPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
AP A ++ VS + P+R ++ P S P +L G +PGD+G+DP GL
Sbjct: 48 APAAGTRSFTVSAAAAD------PNRPLWFP-----GSTPPPWLDGSLPGDFGFDPLGLG 96
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 174
P+ E++H RWAMLGAAG IPE K G P W+ G L
Sbjct: 97 SDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGE-------LE 147
Query: 175 YFGKNIPINLVFAVIAEIVLVGGAEYYR 202
YF + I E++ +G AE R
Sbjct: 148 YFTDKTTL-----FIVEMIFIGWAEGRR 170
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
P W+ G YF + I E++L+G AE R
Sbjct: 133 TP--FWYTAGE-------QEYFTDQTTL-----FIVEMILLGWAEGRR 166
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 4 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEG 62
Query: 172 TLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 63 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 100
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 30 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELLTKLGILN 89
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
P W+ G L YF + +V E++ +G AE R
Sbjct: 90 TPS--WYTAGE-------LEYFTDKTTLFVV-----EMIFLGWAEGRR 123
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
P W+ G YF + I E++L+G AE R
Sbjct: 133 TP--FWYTAGE-------QEYFTDQTTL-----FIVEMILLGWAEGRR 166
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ +
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIF 59
Query: 169 DGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
L+Y G I + A+ A +++L+G E YRI G
Sbjct: 60 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGG 100
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 20/142 (14%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWL 100
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
EL+HARWAMLG +G +IPE K G W+ G ++ YF P
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFAD--PTT 149
Query: 184 LVFAVIAEIVLVGGAEYYRITN 205
L +A + V G + I N
Sbjct: 150 LFIVQLALMGWVEGRRWADIVN 171
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 24 LNVSSAVRTSAPGASNPSTFKP--VALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
L++SS ++ P P A + ++ AK VS V E L PDR
Sbjct: 3 LSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKK---GVSDVCEPLP----PDRP 55
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
++ P S PE+L G +PGD+G+DP GL P+ EL+HARWAMLG +G
Sbjct: 56 LWFPG-----SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGI 110
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYY 201
+IPE K G W++ G T YF P L +A + V G +
Sbjct: 111 LIPELLEKMGYV--ENYSWYEAG-------TQEYFAD--PTTLFIVQLALMGWVEGRRWA 159
Query: 202 RITN 205
+ N
Sbjct: 160 DLVN 163
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 APQ--WYDAG 130
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 22/142 (15%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L GPDR I+ P S P +L G +PGD+G+DP GL +P+ +
Sbjct: 14 GVSTVCEPL----GPDRPIWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSEPELLRWF 64
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
EL+H RWAML AAG ++P+ ++G + G D + YF P
Sbjct: 65 AQAELMHGRWAMLAAAGILVPDLLARWG--------FIDAGFSWFDAGSREYFAD--PWT 114
Query: 184 LVFAVIAEIVLVGGAEYYRITN 205
L ++++ L+G AE R +
Sbjct: 115 L---FVSQMALMGWAEGRRWAD 133
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGIIN 115
Query: 155 GPEAVWFKTG 164
P +W+ G
Sbjct: 116 AP--LWYDAG 123
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 APQ--WYDAG 130
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 78 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
P R + G L S+ P YL +P YG+DP GL+K+ +++ E+IH RWAML
Sbjct: 20 PRARTVMKAGNWLPGSDTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAML 78
Query: 137 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 196
GAAG + E +G W+ L+ G + YFG +IP +L E +
Sbjct: 79 GAAGVLGVEVLG-YGN-------WYDAPLPLVQGGSATYFGASIPFDLGTLAAIEFAAMA 130
Query: 197 GAEYYR 202
GAE +R
Sbjct: 131 GAESFR 136
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
PEYL GE+ GDYG+DP G +P EL+H RWAMLGAAG ++PE NK G
Sbjct: 40 PEYLKGELAGDYGFDPLGFGDEPRRLEWMVQAELVHCRWAMLGAAGILLPEIGNKTGMQS 99
Query: 155 GPEAV----WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
+ W++ G ++ + P ++ +L+G AE+ R+ +
Sbjct: 100 AAPGLAFPHWWEAGKVVAESG---------PWSMGSLTFTMFLLMGWAEHKRLYD 145
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD +DP LS + + EL+H RWAML G +PE ++ GA
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 155 GPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYR 202
E +W+K G +L+G +NY G + I ++ + VL+GG EY R
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIGIAFCQAVLMGGPEYAR 337
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 9/126 (7%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYL 98
+ F+P A S+ A P+K ++ +++ P+ P ++ +G L P YL
Sbjct: 11 AVFRPCAYKSRFLAGAPSKLNRELSIKPMASS-----SPSFKVEAKKGEWLPGLPSPSYL 65
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G P+
Sbjct: 66 NGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ- 124
Query: 159 VWFKTG 164
W+ G
Sbjct: 125 -WYDAG 129
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 9/126 (7%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYL 98
+ F+P A S+ A P+K ++ +++ P+ P ++ +G L P YL
Sbjct: 11 AVFRPCAYKSRFLAGAPSKLNRELSIKPMASS-----SPSFKVEAKKGEWLPGLPSPSYL 65
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G P+
Sbjct: 66 NGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ- 124
Query: 159 VWFKTG 164
W+ G
Sbjct: 125 -WYDAG 129
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP GL++ P++F++Y+ ELIH RWAML G +IPEA
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEAL 107
>gi|159478202|ref|XP_001697193.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
gi|60391855|sp|Q93WD2.3|CB29_CHLRE RecName: Full=Chlorophyll a-b binding protein CP29; AltName:
Full=Lhcbm4
gi|15430560|dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|15430568|dbj|BAB64419.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|27542567|gb|AAO16494.1| CP29-like protein [Chlamydomonas reinhardtii]
gi|158274667|gb|EDP00448.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 280
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 82/196 (41%), Gaps = 60/196 (30%)
Query: 53 KAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL-LDRSEIPEYLTGEVPGDYGYDPF 111
K AP A +K VA S Y R + + L L + PE+L G +PGD G+DP
Sbjct: 21 KPAPKATTKKVATSTGTRSGGVGY----RKYQGDALWLPNTTRPEWLDGSLPGDRGFDPL 76
Query: 112 GLSK------------------------------KPDDFS---------------KYQAY 126
GLSK PD+ S +++
Sbjct: 77 GLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFREC 136
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 186
ELIH RWAML G ++ EA W + G + LDG + Y G ++P ++
Sbjct: 137 ELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDGAS--YAGLSLPFSITQ 186
Query: 187 AVIAEIVLVGGAEYYR 202
+ E++LVGGAE+YR
Sbjct: 187 LIWIEVILVGGAEFYR 202
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIIN 124
Query: 155 GPEAVWFKTG 164
PE W+ G
Sbjct: 125 VPE--WYDAG 132
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAV--SPV 68
A+++ AK +G+ SS+ + ++ S F AL K AA ++ +P
Sbjct: 2 ASAVCAKPCVGSIAATSSSKFETNVASTKASFFSGRALRMTKVAAYTNGDMTISAVAAPQ 61
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK------PDDFSK 122
NE R ++ P S+ PE+L G +PGD+G+DP GL + P+
Sbjct: 62 NE---------RPLWFPG-----SQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKW 107
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ EL+H RWAMLGAAG IPEA K G
Sbjct: 108 FVQAELVHCRWAMLGAAGIFIPEALTKMG 136
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 155 GPEAVWFKTG 164
PE W+ G
Sbjct: 124 VPE--WYDAG 131
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 33 SAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDR 91
S ++ + +P + + PAK +PV+ +P P R+ +G L
Sbjct: 3 SVTAQTSLAVIRPCSRSRFLTGSSPAKLRPVSRNPSASRAV----PAFRVSAKKGEWLPG 58
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
P+YL G +PGD G+DP GL++ P++ + EL + RWAMLG AG ++PE F K G
Sbjct: 59 LASPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIG 118
Query: 152 ANCGPEAVWFKTG 164
P+ W+ G
Sbjct: 119 IINAPQ--WYDAG 129
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ PD Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 155 GPEAVWFKTGAL 166
P+ W+ G +
Sbjct: 122 VPK--WYDAGKV 131
>gi|302839735|ref|XP_002951424.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
gi|300263399|gb|EFJ47600.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
Length = 317
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 85/208 (40%), Gaps = 60/208 (28%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL-LDRSEIPEYLTGEV 102
KP A + K AP A +K VA S Y R + + L L + PE+L G +
Sbjct: 49 KPKAGTATTKPAPKATTKKVASSSGTRSGGVGY----RKYQGDALWLPNTVRPEWLDGSL 104
Query: 103 PGDYGYDPFGLSK------------------------------KPDDFS----------- 121
PGD G+DP GL+K PD+ S
Sbjct: 105 PGDRGFDPLGLAKPSEFVVIGVDENDQNAAKNNKGSVEAVVTATPDEVSAENRLAPYSEV 164
Query: 122 ----KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+++ ELIH RWAML G ++ EA W G + LDG + Y G
Sbjct: 165 FGLARFRECELIHGRWAMLACLGCLVAEATTGVS--------WVDAGKVELDGAS--YAG 214
Query: 178 KNIPINLVFAVIAEIVLVGGAEYYRITN 205
++P ++ + E++LVGGAE YR T
Sbjct: 215 LSLPFSITQLIWIEVILVGGAEIYRNTE 242
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 66/142 (46%), Gaps = 20/142 (14%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PG++G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGNFGFDPLGLGSDPELLKWL 100
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
EL+HARWAMLG +G +IPE K G W+ G ++ YF P
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFAD--PTT 149
Query: 184 LVFAVIAEIVLVGGAEYYRITN 205
L +A + V G + I N
Sbjct: 150 LFIVQLALMGWVEGRRWADIVN 171
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 43 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFA 93
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H+RWAML AG +IPE + G
Sbjct: 94 QAELMHSRWAMLAVAGILIPECLERLG 120
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 115
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 116 APQ--WYDAG 123
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 115
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 116 APQ--WYDAG 123
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
SEIP YL GE+PGD+G+DP L + P YQ EL + RWAML AAG + + G
Sbjct: 45 SEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLG 104
Query: 152 ANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
A GP A WFK + YF P + +F I E++L E R +
Sbjct: 105 AG-GPAAATPWFK-------ASDFTYFA---PTSTLF--IVELLLFAWVEVRRYQD 147
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 115
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 116 APQ--WYDAG 123
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 65/154 (42%), Gaps = 27/154 (17%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
+ KAA P ++ + V E W+ + P +L G +P D+G+
Sbjct: 50 LRQSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGF 96
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
DP GL P+ EL+H RWAMLGAAG IPE K G P W+ G
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGE--- 151
Query: 169 DGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
L YF + +V E++ +G AE R
Sbjct: 152 ----LEYFTDKTTLFVV-----EMIFLGWAEGRR 176
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGY--GNW 111
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W T G Y G +P NL + E + + AE R
Sbjct: 112 VSAQKWAAT-----PGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQR 155
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
+ F+P A S+ + P+K ++ VA P++ A + ++ GL P YL
Sbjct: 11 AVFRPCASKSRFLSGSPSKLNREVAFKPMSSSPASFKVEAKKGEWLPGLPS----PAYLN 66
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G P+
Sbjct: 67 GSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPK-- 124
Query: 160 WFKTG 164
W+ G
Sbjct: 125 WYDAG 129
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
P YL G +P DYG+DP GL K+PD+ +++Q ELIHARWAMLG +G
Sbjct: 46 PSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSG 91
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 13 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFA 63
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H+RWAML AG +IPE + G
Sbjct: 64 QAELMHSRWAMLAVAGILIPECLERLG 90
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G++PGD G+DP GL++ P++ Y EL++ RWAMLG AG + PE K G
Sbjct: 56 PAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLIN 115
Query: 155 GPEAVWFKTG 164
PE W+ G
Sbjct: 116 APE--WYDAG 123
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 64 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 123
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 124 APQ--WYDAG 131
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K + G Y G+ +P + ++A E + + E+ R
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGY--GNW 68
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W T G Y G +P + ++A E + + AE R
Sbjct: 69 VSAQKWAAT-----PGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQR 112
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 81 VSTVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 131
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
EL+H+RWAML AG +IPE G WF GA YF P L
Sbjct: 132 QAELMHSRWAMLAVAGILIPEWLESLGFI--ENYNWFDAGA-------REYFAD--PTTL 180
Query: 185 VFAVIAEIVLVGGAEYYR 202
I ++VL+G E R
Sbjct: 181 ---FIVQLVLMGWVEGRR 195
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 39/64 (60%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P++L GE+PGDYG+DP L K+P D Y EL H RWAMLG AG PE K G
Sbjct: 41 DAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGI 100
Query: 153 NCGP 156
+ P
Sbjct: 101 SDLP 104
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +L G++P DYG+DP L +KPD+ ++Y+ EL+HARWAM+G AG + G
Sbjct: 38 AEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGVAGAV--------G 89
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
+ W D T Y G L + VLV AE R
Sbjct: 90 VEIAGQGDWASAQPTTWDA-TAKYLGNETHAPLFAVIGVNGVLVAFAESQR 139
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 116 APQ--WYDAG 123
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +LTG +P DYG+DP GL K+P + +++Q E+IH+RWAMLG AG EA
Sbjct: 47 PAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVAGAAGQEAITGV---- 102
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
W + A + D T Y G P L V E+ ++ E R
Sbjct: 103 ----TWIE--APVQDSQT--YLGAESPFPLPVVVAIEVFVMAFVEQQR 142
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 116 APQ--WYDAG 123
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD+G+DP GL + P+ Y EL+H+R+AMLG G ++ + G N
Sbjct: 68 PTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNS 127
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
P +WF+ GA+ K N V+ +++L+G AE R +
Sbjct: 128 IP--IWFEAGAV-----------KYEFANTGTLVVVQLLLMGYAETRRYMD 165
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G ++PEA +G
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K L G Y G +P + ++A E + + E+ R
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR 156
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPV S+ AA P V SP +A +R +LP GL + P +L G +P
Sbjct: 21 KPVTALSRSMAAIPGHH--VFQSP-RARIAVRASTERATWLP-GL----DPPPHLDGTLP 72
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P VWF+
Sbjct: 73 GDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLP--VWFEA 130
Query: 164 GALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
GA D NT F +++L+G AE R
Sbjct: 131 GATKFDFANTTALF------------FVQLLLMGFAETKR 158
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 116 APQ--WYDAG 123
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 116 APQ--WYDAG 123
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
++S V E L GPDR ++ P + P +L G +PGD+G+DP G +P+ +
Sbjct: 56 SLSTVCEPL----GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWF 106
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H RWAML AG +IPE K+G
Sbjct: 107 AQAELMHGRWAMLAVAGILIPEILQKWG 134
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 116 APQ--WYDAG 123
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
++S V E L GPDR ++ P + P +L G +PGD+G+DP G +P+ +
Sbjct: 56 SLSTVCEPL----GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWF 106
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H RWAML AG +IPE K+G
Sbjct: 107 AQAELMHGRWAMLAVAGILIPEILQKWG 134
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 155 GPEAVWFKTGAL 166
P+ W+ G +
Sbjct: 122 VPK--WYDAGKV 131
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
++S V E L GPDR ++ P + P +L G +PGD+G+DP G +P+ +
Sbjct: 53 SLSTVCEPL----GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWF 103
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H RWAML AG +IPE K+G
Sbjct: 104 AQAELMHGRWAMLAVAGILIPEILQKWG 131
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 VPK--WYDAG 130
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIIN 115
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 116 APQ--WYDAG 123
>gi|87313237|gb|ABD37915.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas incerta]
Length = 259
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 55/156 (35%)
Query: 95 PEYLTGEVPGDYGYDPFGLSK------------------------------KPDDFS--- 121
PE+L G +PGD G+DP GLSK PD+ S
Sbjct: 66 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNVGKNNKGTVEAIVQASPDEVSSEN 125
Query: 122 ------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
+++ ELIH RWAML G ++ EA W + G + LD
Sbjct: 126 RLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELD 177
Query: 170 GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G + Y G ++P ++ + E++LVGGAE+YR T
Sbjct: 178 GAS--YAGLSLPFSITQLIWIEVILVGGAEFYRNTE 211
>gi|210162116|gb|ACJ09656.1| putative chloroplast light harvesting chlorophyll a/b binding
protein [Cupressus sempervirens]
Length = 169
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 18/147 (12%)
Query: 68 VNEELAKWYGPDRRIFL-PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 126
V+ + WYGPDR ++L P G E P YLTGE PGDY +D L+ + +K +
Sbjct: 14 VSASTSPWYGPDRVLYLEPSG-----EPPSYLTGEFPGDY-WDTARLADP--ETAKNREL 65
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 186
E+IH R +MLGA G + E + G EAVWF GA + G L+Y + +
Sbjct: 66 EVIHCR-SMLGALGCV--ELLARNGVF---EAVWFN-GAQISVG--LDYLPSLVHAQSIL 116
Query: 187 AVIAEIVLVGGAEYYRITNGFGGQASP 213
A+ +++L+G E YRI +G G P
Sbjct: 117 AISCQVILMGAVEGYRIASGPLGVTDP 143
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPV S+ AA P V SP +A +R +LP GL + P +L G +P
Sbjct: 21 KPVTALSRSMAAIPGHH--VFQSP-RARIAVRASTERATWLP-GL----DPPPHLDGTLP 72
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P VWF+
Sbjct: 73 GDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFIRVSGINNLP--VWFEA 130
Query: 164 GALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
GA D NT F +++L+G AE R
Sbjct: 131 GATKFDFANTTALF------------FVQLLLMGFAETKR 158
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE +G
Sbjct: 63 PTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 VPK--WYDAG 130
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEALGY--GNW 68
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W T G Y G +P NL + E + + E R
Sbjct: 69 VSAQKWAAT-----PGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQR 112
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +P DYG+DP L PD + + EL+H RWAM+G AG ++P K GA
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 155 GPEAVWFKTGALLLDGNTLNY 175
P VWF+ G + D +++ +
Sbjct: 69 VP--VWFEAGKVANDNSSVPF 87
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
+R+++ P GL+ + P +L G +PGD+GYDP GL+K P ++Y+ E+++ RWAMLG
Sbjct: 37 ERKLWAP-GLV---KAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGV 92
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 198
AG + PE + W + G Y G +P + E +
Sbjct: 93 AGMLAPELVG--------QGTWLSAQDWAVTGGKPTYLGNELPYGFGTVLAVEFFCLSWV 144
Query: 199 EYYR 202
E R
Sbjct: 145 EISR 148
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 56 PPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K + G Y G+ +P + ++A E + + E+ R
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 VPK--WYAAG 130
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G ++PEA +G
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K + G Y G +P + ++A E + + E+ R
Sbjct: 112 -----WVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR 156
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K A++ P S A G RR++ P E P YL GE+ GDY
Sbjct: 13 AFLTGRKVVSKARAGPAPRSTFQVSAAASQG--RRLWAPG-----VEAPSYLNGELAGDY 65
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
G+DP GL KP+ Y+ EL+HARWAML AG + E
Sbjct: 66 GWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQE 104
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 VPK--WYAAG 130
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K L G Y G +P + ++A E + + E+ R
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR 156
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 45 VSAVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 95
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+HARWAML G ++PE K G
Sbjct: 96 QAELMHARWAMLAVFGILVPELLEKIG 122
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA N
Sbjct: 54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 111
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W T G Y G+ +P + ++A E V + E+ R
Sbjct: 112 VKAQEWAAT-----PGGQATYLGQPVPWGTLPIILAIEFVAIAFVEHQR 155
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
R+ + L P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G
Sbjct: 41 RVTMSADWLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 198
+IPEA W K G Y G+ +P + V+A E V +
Sbjct: 101 ILIPEALGL--------GNWVKAQEWAAAPGGQATYLGQPVPWGTLPTVLAIEFVAIAFV 152
Query: 199 EYYR 202
E+ R
Sbjct: 153 EHQR 156
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K L G Y G +P + ++A E + + E+ R
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR 156
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 121
Query: 155 GPEAVWFKTGAL 166
P+ W+ G +
Sbjct: 122 VPK--WYDAGKV 131
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 VPK--WYDAG 130
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K L G Y G +P + ++A E + + E+ R
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR 156
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 64/154 (41%), Gaps = 27/154 (17%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
+ KAA P ++ + V E W+ + P +L G +P D+G+
Sbjct: 50 LRQSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGF 96
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
DP GL P+ EL+H RWAMLGAAG IPE K G P W+ G
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGE--- 151
Query: 169 DGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
YF + +V E++ +G AE R
Sbjct: 152 ----QEYFTDKTTLFVV-----EMIFLGWAEGRR 176
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F G
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 121 VPK--WYDAG 128
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 155 GPEAVWFKTG 164
PE W+ G
Sbjct: 124 VPE--WYDAG 131
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 63
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K L G Y G +P + ++A E + + E+ R
Sbjct: 64 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR 108
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
Query: 155 GPEAVWFKTGAL 166
P+ W+ G +
Sbjct: 115 VPK--WYDAGKV 124
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 19/140 (13%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAV---SPVNEELAKWYGPDRRIFLPEGL---LDRSEI 94
++F VAL + + PA+ V V ELAK R+ GL S+
Sbjct: 5 TSFSGVALRPAQSVSRPARRSSVVVRSEGSEGSELAK----VERVAKAGGLYQNFTSSQA 60
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFN 148
YL G +PGD+G+DP GL P+ ++ AY E+IH RWAMLG AGF+ PE
Sbjct: 61 LGYLDGTLPGDFGFDPLGLCD-PEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLA 119
Query: 149 KFGA--NCGPEAVWFKTGAL 166
GA EAVWF++G +
Sbjct: 120 TIGAIPASPEEAVWFRSGVI 139
>gi|30694148|ref|NP_850706.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645786|gb|AEE79307.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 164
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA 190
W K L G Y G +P + ++A
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILA 143
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K + G Y G+ +P L ++ E + + E+ R
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQR 158
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGDYG+DP GL ++P+D Y EL+H R+AM G AG + + G
Sbjct: 60 PAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIGN 119
Query: 155 GPEAVWFKTGALLLD-GNTLNYF 176
P VWF+ GA D NT F
Sbjct: 120 LP--VWFEAGATKFDFANTTALF 140
>gi|305377034|dbj|BAJ15880.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 96
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y
Sbjct: 1 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 59
Query: 177 GK--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
G I + A+ A +++L+G E YRI G
Sbjct: 60 GNPSLIHAQSILAIWACQVILMGAVEGYRIAGG 92
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 95/202 (47%), Gaps = 47/202 (23%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
A + +++LG P+ S+ R+SA + + ++PPAK
Sbjct: 5 ALLSGRQLLGRPVQ-SAVSRSSA---------RKAPFVVRASSSPPAKQ----------- 43
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY 126
G DR+++ + YL G +PGDYG+DP GLS P+ K+ AY
Sbjct: 44 -----GADRQLWFAS-----KQSLSYLDGTLPGDYGFDPLGLS-DPEGTGGFIEPKWLAY 92
Query: 127 -ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPIN 183
E+I+ R+AMLGA G I PE F K G PE WFKTG + G T NY+ + +
Sbjct: 93 GEVINGRYAMLGAVGAIAPEIFGKMGI-IPPETALPWFKTGVIPPAG-TYNYWADSYTL- 149
Query: 184 LVFAVIAEIVLVGGAEYYRITN 205
+ + L+G AE+ R+ +
Sbjct: 150 ----FVFNMALMGFAEHRRLQD 167
>gi|384248209|gb|EIE21694.1| hypothetical protein COCSUDRAFT_67011 [Coccomyxa subellipsoidea
C-169]
Length = 316
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 92/228 (40%), Gaps = 72/228 (31%)
Query: 32 TSAPGASNPSTFKPVALFSK-----KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+SA G N S ALF KKA P K + VA +P+ + + K +R+ +
Sbjct: 17 SSAIGRGNGSRLN--ALFKGGTKQLKKATAPVK-RAVA-TPIKKAVPKTSVGTQRVGKRK 72
Query: 87 G-------LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------------------- 120
G L +E P +L G +PGD G+DP GLS P D+
Sbjct: 73 GSGGGDALWLPNTERPAWLDGSLPGDRGFDPLGLSS-PQDYLQVGIDQLDQNKAVNKAGA 131
Query: 121 --------------------------SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
+++ ELIH RWAMLGA G ++ EA
Sbjct: 132 IVGKFAAPKTKISDTALQPYDEVFGLQRFRETELIHGRWAMLGALGVLVAEASTGVS--- 188
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
W G + LDG Y G ++P ++ V E +LVGGAE YR
Sbjct: 189 -----WVDAGKVELDGA--QYLGFSLPFSISQLVWIEAILVGGAEIYR 229
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V E WY IF LL + P+YL G + GDYG+DP GL P+ YQ E
Sbjct: 32 VFAERKLWYEFSFSIFF---LLPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAE 88
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
L++ARWAM+ AG EA G ++ W+ G
Sbjct: 89 LMNARWAMMAVAGICTTEAL-------GIQSKWYMAG 118
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
+ KAA P ++ + V E W+ + P +L G +P D+G+
Sbjct: 50 LRQSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGF 96
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DP GL P+ EL+H RWAMLGAAG IPE K G P W+ G
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAG 150
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 27/169 (15%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R +++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AAAPPVKQ------GANRPLWVAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
GDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAET 130
Query: 158 AV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 131 ALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQD 173
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 126
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFG 208
P VWF+ GA+ K N +I +++L+G AE R + G
Sbjct: 127 IP--VWFEAGAV-----------KYEFTNTQTLIIVQLLLMGFAETKRYMDFIG 167
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 27/169 (15%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
GDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAET 130
Query: 158 AV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 131 ALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQD 173
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 27/169 (15%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
GDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAET 130
Query: 158 AV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 131 ALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQD 173
>gi|30694146|ref|NP_850705.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645784|gb|AEE79305.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 207
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 3 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLG 61
Query: 178 K--NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
I + A+ A ++VL+G E YRI G
Sbjct: 62 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGG 93
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YL G + GD G+DP L++ P+D + EL++ RWAMLG AG +IPE K G
Sbjct: 54 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 113
Query: 153 NCGPEAVWFKTG 164
PE W+ G
Sbjct: 114 LNAPE--WYDAG 123
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 75/180 (41%), Gaps = 33/180 (18%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
L +S SA A + A F+ AP + + V N EL W
Sbjct: 4 LTTTSVRAVSAVSARKANFAGSRASFAAPAKAPVSARASLKVQAANREL--W-------- 53
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L D + P +L G +PGD+G+DP GL P+ YQ EL++ARWAM+ AG
Sbjct: 54 ----LKDSTVAPAHLDGTLPGDFGFDPLGLGADPERLKYYQEAELMNARWAMMAVAGICT 109
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 203
E G W++ GA D +PIN + AV + ++G E RI
Sbjct: 110 TEILGIGGP-------WYEAGAAEYD----------LPINALLAV--QFPVMGILELRRI 150
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S KP FS+ AA P P +A+ +R +LP GL + P YL G
Sbjct: 16 SLSKPPTAFSRSTAAMPGHH---VQPPRARVVARASAAERATWLP-GL----DPPPYLDG 67
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
+PGDYG+DP GL ++P D Y EL+H R+AM G AG + + G + P VW
Sbjct: 68 TLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGISNLP--VW 125
Query: 161 FKTGALLLD-GNTLNYF 176
F+ GA D NT F
Sbjct: 126 FEAGATKFDFANTTALF 142
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K + G Y G +P +L ++ E V + AE+ R
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQR 157
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 134
Query: 155 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRI 203
W K A L DG Y G +P NL + E + + AE R
Sbjct: 135 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQRT 182
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 45 VSAVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 95
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H+RWAML G ++PE + G
Sbjct: 96 QAELMHSRWAMLAVFGILVPELLERIG 122
>gi|414881721|tpg|DAA58852.1| TPA: chlorophyll a-b binding protein 2, mRNA [Zea mays]
Length = 311
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWGHARR 108
Query: 139 AGFIIPEA 146
A +P A
Sbjct: 109 ARVRVPGA 116
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+D GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K + G Y G+ +P + ++A E + + E+ R
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K L G Y G +P + V+A E + + E+ R
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQR 156
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG AG + E
Sbjct: 43 SDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGY-- 100
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
W+ ++G +FG +P +L + E V + AE R
Sbjct: 101 ------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQR 145
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K + G Y G +P L ++ E V + AE+ R
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR 157
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 45 VSAVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 95
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H+RWAML G ++PE + G
Sbjct: 96 QAELMHSRWAMLAVFGILVPELLERIG 122
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K L G Y G +P + V+A E + + E+ R
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQR 156
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 14 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 73
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
P VWF+ GA+ K N +I +++L+G AE R +
Sbjct: 74 IP--VWFEAGAV-----------KYEFTNTQTLIIVQLLLMGFAETKRYMD 111
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 155 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K A L DG YFG +P NL + E + + AE R
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYFGVPVPWGNLPTILAIEFLAIAFAEQQR 158
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 29/170 (17%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--TATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
GDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G PE
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGL-IPPE 129
Query: 158 AV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 130 TALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQD 173
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 114
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K + G Y G +P + ++A E V + AE+ R
Sbjct: 115 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEHQR 161
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K + G Y G +P L ++ E V + AE+ R
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR 157
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 26/192 (13%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
VS+ +S+ +N +T++ ++L K + PAKS+ + S R +LP
Sbjct: 12 VSALKDSSSIFTNNINTYQTLSL--NKVTSLPAKSRGIFHSHGRRLCTVVRAQQRPTWLP 69
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
GL + P YL G + GD+G+DP GL + P+ Y EL+H+R+AM G AG + +
Sbjct: 70 -GL----DPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTD 124
Query: 146 AFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 204
G + P VW++ GA NT F I +++L+G E R
Sbjct: 125 LLRTTGLSNLP--VWYEAGATKFQFANTTTLF------------IVQMLLMGFVETKRYM 170
Query: 205 N----GFGGQAS 212
+ G G+AS
Sbjct: 171 DFKNPGSQGEAS 182
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
+ KAA P ++ + V E W+ + P +L G +P D+G+
Sbjct: 50 LRQSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGF 96
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLG 139
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 34 APGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + A P P+ WYGPDR +L
Sbjct: 4 AATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYL------ 57
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
PF ++ P F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 58 ------------------GPFS-AQTPFAFARNRALEVIHGRWAMLGALGCITPEVLEKW 98
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGF 207
E +WFK GA + L+Y G + + AV+ ++VL+G E +RI NG
Sbjct: 99 LRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGL 157
Query: 208 GG 209
G
Sbjct: 158 PG 159
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 102/202 (50%), Gaps = 33/202 (16%)
Query: 19 MLGNPLN-VSSAVRTSAPGASNPSTFKPVAL-----FSKKK---AAPPAKSKPVAVSPVN 69
++ NPL+ +++++ ++ A+ S P + F++KK A A ++P A S
Sbjct: 7 LIRNPLSFLNTSIHSTMATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQA-SKAA 65
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQ 124
+ + K DR++F + YL G PGD+GYDP GL K P+ K+
Sbjct: 66 KFVVKAEKSDRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWL 119
Query: 125 AY-ELIHARWAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
AY E+IH R+AMLG AG + PE K G A G VWFKTG + +G +Y+
Sbjct: 120 AYSEVIHCRYAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGVIPSEGQ-YDYWAS-- 174
Query: 181 PINLVFAVIAEIVLVGGAEYYR 202
P+ L + E+VL+ AE R
Sbjct: 175 PLALFW---IEVVLMQFAELRR 193
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP L++ P+D + EL++ RWAMLG AG +IPE K G
Sbjct: 39 PAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLN 98
Query: 155 GPEAVWFKTG 164
PE W+ G
Sbjct: 99 APE--WYDAG 106
>gi|384248196|gb|EIE21681.1| chlorophyll a/b-binding protein CP29 [Coccomyxa subellipsoidea
C-169]
Length = 267
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 64/156 (41%), Gaps = 56/156 (35%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDF------------------------------- 120
++ P +L G +PGD G+DP LSK P +F
Sbjct: 58 TQRPAWLDGSLPGDRGFDPLELSK-PSEFLQVDLDQSDINKSVNKAGGIVGKYSSSKVQA 116
Query: 121 --------------SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
+++ ELIH RWAMLGA G +I EA W G +
Sbjct: 117 TGAALSPYSEVFGLQRFRETELIHGRWAMLGALGVVIAEATTGVS--------WVDAGKV 168
Query: 167 LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
LDG Y G ++P ++ + E++LVGGAE YR
Sbjct: 169 ELDGT--QYLGFSLPFSISQLIWIEVLLVGGAEIYR 202
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 23/117 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P +LTGE PGD G+DP + P+ F + +A E+ H R AMLG AG +IPE +
Sbjct: 260 AKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR-- 317
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFG 208
VWF+ G + YF + L +EY+R GFG
Sbjct: 318 ------GVWFQAGESVDAAQLGLYF---------------MFLAAPSEYWRGNGGFG 353
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P YLTGE P D G+DP GL+K P + + ++ E+ H+R AMLG G +IPE
Sbjct: 80 PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPE 130
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP L++ P++ + EL++ RWAMLG AG ++PE F + G
Sbjct: 63 PAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 VPK--WYDAG 130
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P++L G +PGDYG+DP GL + + YQ EL+HARWAMLG AG PE F
Sbjct: 51 PKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGVAGMAAPEIF 103
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 23/117 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P +LTGE PGD G+DP + P+ F + +A E+ H R AMLG AG +IPE +
Sbjct: 260 AKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR-- 317
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFG 208
VWF+ G + YF + L +EY+R GFG
Sbjct: 318 ------GVWFQAGESVDAAQLGLYF---------------MFLAAPSEYWRGNGGFG 353
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 23/117 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P +LTGE PGD G+DP + P+ F + +A E+ H R AMLG AG +IPE +
Sbjct: 622 AKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR-- 679
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFG 208
VWF+ G + YF + L +EY+R GFG
Sbjct: 680 ------GVWFQAGESVDAAQLGLYF---------------MFLAAPSEYWRGNGGFG 715
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P YLTGE P D G+DP GL+K P + + ++ E+ H+R AMLG G +IPE
Sbjct: 80 PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPE 130
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P YLTGE P D G+DP GL+K P + + ++ E+ H+R AMLG G +IPE
Sbjct: 442 PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPE 492
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G++ GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
P VW++ GA+ D + ++ + +L+G AE R +
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYVD 153
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 30/179 (16%)
Query: 30 VRTSAPGASNPSTFKPVALFS-KKKAAPPAKSKPVAVSPVNEELAKWY-GPDRRIFLPEG 87
RT++P +PVA +S ++ + PA SP +A G R +LP G
Sbjct: 18 TRTASP--------RPVAGWSCRRTLSTPAHHHHARSSPRARVVAVRAAGTQRATWLP-G 68
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L + P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM G AG + +
Sbjct: 69 L----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLL 124
Query: 148 NKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G + P VWF+ GA D NT F ++ L+G AE R +
Sbjct: 125 RVSGNSDLP--VWFEAGAAKFDFANTTALF------------FVQLFLMGFAETKRYMD 169
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 119 APQ--WYDAG 126
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 119 APQ--WYDAG 126
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG AG + E
Sbjct: 43 SDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGY-- 100
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
W+ ++G +FG +P +L + E V + AE R
Sbjct: 101 ------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQR 145
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P +L G PGD+G+DP GL P++ +Y+ ELIH RWAML G +IPEA
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL 109
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
R+ P+ + PG +DP G SK P F +Y+ E+ + R A+L GF + + N
Sbjct: 157 QRNGEPDLEKRKYPGG-AFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASAN 214
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YL G + GDYG+DP GL P+ + Y+ EL +ARWAMLG AG + E N
Sbjct: 46 PKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIIN------ 99
Query: 155 GPEAVWFKTGA----LLLDGNTLNYFG 177
PE W+ G DGN +N G
Sbjct: 100 -PEQWWYSAGMPENLPSFDGNKVNMGG 125
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 155 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRI 203
W K A L DG Y G +P NL + E + + AE R
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQRT 159
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
G RI + + P YL G PGD+G+DP L + P++ +++ ELIH RWAML
Sbjct: 37 GSSSRITMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAML 96
Query: 137 GAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVL 194
G ++PEA W K + G Y G+ +P L ++ E +
Sbjct: 97 AVPGILVPEALGL--------GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLA 148
Query: 195 VGGAEYYR 202
+ E+ R
Sbjct: 149 IAFVEHQR 156
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
+P++L +P DYG+DP GL +P+ Y EL+H R+AMLG AG +IP K G
Sbjct: 39 VPQHLNRNLPADYGFDPLGLGSEPEALKWYVQAELVHCRFAMLGVAGILIPGLLTKVGIL 98
Query: 154 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 189
P+ W++ G + ++ FG N L F +
Sbjct: 99 NVPQ--WYEAGKVAIESQP---FGLNFQTLLGFQLF 129
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG AG + E
Sbjct: 39 SDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGY-- 96
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
W+ ++G +FG +P +L + E V + AE R
Sbjct: 97 ------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQR 141
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG AG + E +G
Sbjct: 43 SDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLG-YG 101
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 199
W+ ++G +FG +P +L + E V + AE
Sbjct: 102 N-------WYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ +P YL G +PGD+G+DP L +P Y EL+HAR+AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
+ W G D YF P + +F V +++L AE R +
Sbjct: 125 FS------WPGAGVAWYDAGKFQYFA---PASSLFGV--QMLLFAWAELRRYQD 167
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P++LTGE PGD G+DP GLSK P F + + E+ H R AMLG G I+PE F G
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGP-- 224
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
WF + NL + + ++ EY+R GF
Sbjct: 225 -----WFDLSSF----------------NLTRLGLVALQVIAPLEYWRGNRGF 256
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 541 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 598
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQ 210
WF+ G +DG L + + + EY+R GF Q
Sbjct: 599 ------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQ 636
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 915 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 972
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQ 210
WF+ G +DG L + + + EY+R GF Q
Sbjct: 973 ------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQ 1010
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 51/113 (45%), Gaps = 23/113 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
WF+ + D N FAV+A + +V EY+R GF
Sbjct: 783 ---GAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGF 817
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
P +LTGE GD G+DP GL+ PD F + + E+ H R AML G ++P+ K
Sbjct: 359 PSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALVPDYLGK 413
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K + G YFG +P NL + E + + AE+ R
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR 158
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 108
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 79
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K + G YFG +P NL + E V + AE+ R
Sbjct: 80 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQR 126
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
P VW++ GA+ D + ++ + +L+G AE R +
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMD 153
>gi|33772151|gb|AAQ54512.1| chlorophyll a/b-binding protein type I [Malus x domestica]
Length = 147
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 58 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 110
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
P+YL GE+ GDYG+DP GL P Y+ EL+HARWAMLG AG ++ E
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEV 93
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 48 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 107
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
P VW++ GA+ D + ++ + +L+G AE R +
Sbjct: 108 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMD 145
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ +P YL G +PGD+G+DP L +P Y EL+HAR+AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
+ W G D YF P + +F V +++L AE R +
Sbjct: 125 FS------WPGAGVAWYDAGKFQYFA---PASSLFGV--QMLLFAWAELRRYQD 167
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
P VW++ GA+ D + ++ + +L+G AE R
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKR 150
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR+++ P G++ PEYL GE+ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 19 DRKLWAP-GVV----APEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 73
Query: 139 AGFIIPE 145
AG ++ E
Sbjct: 74 AGVLVQE 80
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G DP GL++ P+ Y EL++ RWAMLG AG IPE G
Sbjct: 62 PSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLIN 121
Query: 155 GPEAVWFKTGAL 166
P+ W+ G +
Sbjct: 122 VPK--WYDAGKV 131
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP L++ P D + EL++ RWAMLG AG +IPE K G
Sbjct: 58 PAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGLLS 117
Query: 155 GPEAVWFKTG 164
PE W+ G
Sbjct: 118 APE--WYDAG 125
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL 107
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W + + G Y G +P L ++ E V + AE+ R
Sbjct: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR 153
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W + + G Y G +P L ++ E V + AE+ R
Sbjct: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR 153
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 62 VPK--WYDAG 69
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFKTGALLLD 169
P VW++ GA+ D
Sbjct: 116 LP--VWYEAGAVKFD 128
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 30/179 (16%)
Query: 30 VRTSAPGASNPSTFKPVALFS-KKKAAPPAKSKPVAVSPVNEELAKWY-GPDRRIFLPEG 87
RT++P +PVA +S ++ + PA SP +A G R +LP G
Sbjct: 18 TRTASP--------RPVAGWSCRRTLSTPAHHHHARPSPRARVVAVRAAGTQRATWLP-G 68
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L + P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM G AG + +
Sbjct: 69 L----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLL 124
Query: 148 NKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G + P VWF+ GA D NT F ++ L+G AE R +
Sbjct: 125 RVSGNSDLP--VWFEAGAAKFDFANTTALF------------FVQLFLMGFAETKRYMD 169
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 109
Query: 155 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K A L DG Y G +P NL + E + + AE R
Sbjct: 110 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR 156
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSK--KPDDFS--KYQAY-ELIHARWAMLGAAGFIIPEA 146
S+ YL G +PGDYG+DP GLS +F + +Y E+I+ R+AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 147 FNKFGANCGPEA-VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
F K G A VWFKTG G T NY+ P L F E+ L+G AE+ R
Sbjct: 126 FGKIGIIPQQTAVVWFKTGVFPPAG-TYNYWAD--PYTLFF---LEMALMGFAEHRR 176
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 155 GPEAVWFKTGAL 166
P +W+ G +
Sbjct: 119 AP--LWYDAGKV 128
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 155 GPEAVWFKTGAL 166
P +W+ G +
Sbjct: 119 AP--LWYDAGKV 128
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSK--KPDDFS--KYQAY-ELIHARWAMLGAAGFIIPEA 146
S+ YL G +PGDYG+DP GLS +F + +Y E+I+ R+AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 147 FNKFGANCGPEA-VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
F K G A VWFKTG G T NY+ P L F E+ L+G AE+ R
Sbjct: 126 FGKIGIIPQETAVVWFKTGVFPPAG-TYNYWAD--PYTLFF---LEMALMGFAEHRR 176
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K + G Y G +P + ++A E + + E+ R
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR 158
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 62 VPK--WYDAG 69
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGIIN 61
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 62 VPK--WYDAG 69
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K P ++ E+IH RWAMLG A
Sbjct: 31 RVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVA 90
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 199
G + E W+ + G +FG +P +L + E V + AE
Sbjct: 91 GALAVELLGY--------GNWYDAPLWAVTGGKATWFGIEVPFDLNTLLAFEFVAMAAAE 142
Query: 200 YYR 202
R
Sbjct: 143 GQR 145
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
L S+ P +L ++PG+YG+DP L K P ++ E+IH RWAMLG AG + E
Sbjct: 4 LPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLG 63
Query: 149 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
W+ ++G +FG ++P +L + E V + AE R
Sbjct: 64 Y--------GNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQR 109
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 62 VPK--WYDAG 69
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 96 EYLTGEVPGDYGYDPFGL-------SKKPDDFSK---YQAYELIHARWAMLGAAGFIIPE 145
+YL G +PGDYG+DP GL + F Q E+IHARWAMLGAAG I PE
Sbjct: 68 KYLDGTLPGDYGFDPLGLLDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAPE 127
Query: 146 AFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 204
K G AV WF+TG + G +++ P L F E+V + AE R+
Sbjct: 128 ILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWAD--PFTLFF---IEVVAIQFAELKRLQ 182
Query: 205 N 205
+
Sbjct: 183 D 183
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 61
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K + G Y G +P L ++ E V + AE+ R
Sbjct: 62 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR 108
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 94/213 (44%), Gaps = 50/213 (23%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ AVR S S PS+ S+K A + PV V+ L W+ + +
Sbjct: 16 AEAVRQSFRARSLPSSVG----CSRKGLVRAAATPPVKQGGVDRPL--WFASKQSL---- 65
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAG 140
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGA G
Sbjct: 66 ---------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVG 115
Query: 141 FIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 199
I PE K G A+ WF+TG + G T NY+ N + + E+ L+G AE
Sbjct: 116 AIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAE 169
Query: 200 YYRITN-----------------GFGGQASPRW 215
+ R + GFGG +P +
Sbjct: 170 HRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAY 202
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR+++ P G++ PEYL G++ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 31 DRKLWAP-GVV----APEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 85
Query: 139 AGFIIPE 145
AG ++ E
Sbjct: 86 AGVLVQE 92
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKY------QAYELIHARWAMLGAAGFIIPEAFNKF 150
YLTG +P DYG+DP GL + + Q E+IHARWAMLGAAG I PE
Sbjct: 35 YLTGALPADYGFDPLGLLDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILATA 94
Query: 151 GA--NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
G E +WFK+G + G Y+ P +L F E++LV AE R
Sbjct: 95 GVIPQTPDEVIWFKSGVIPPAGVYDKYWLD--PYSLFF---IEVILVQFAELRR 143
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 20/130 (15%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
G R +LP GL + P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM
Sbjct: 105 GTQRATWLP-GL----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMA 159
Query: 137 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLV 195
G AG + + G + P VWF+ GA D NT F ++ L+
Sbjct: 160 GVAGILFTDLLRVSGNSDLP--VWFEAGAAKFDFANTTALF------------FVQLFLM 205
Query: 196 GGAEYYRITN 205
G AE R +
Sbjct: 206 GFAETKRYMD 215
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 35/63 (55%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +PGDYG+DP L + D Y EL HARWAMLG AG PE FG +
Sbjct: 46 PSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSD 105
Query: 155 GPE 157
P
Sbjct: 106 LPN 108
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 53/113 (46%), Gaps = 23/113 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P++LTGE PGD G+DP GLS P F + + E+ H R AMLG G I+PE F G
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGP-- 224
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
WF L G L G + VIA + EY+R GF
Sbjct: 225 -----WFD-----LSGFNLTRLGL-----VALQVIAPL------EYWRGNRGF 256
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 541 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 598
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQ 210
WF+ G +DG L + + + EY+R GF Q
Sbjct: 599 ------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQ 636
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 915 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 972
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQ 210
WF+ G +DG L + + + EY+R GF Q
Sbjct: 973 ------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQ 1010
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 51/113 (45%), Gaps = 23/113 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
WF+ + D N FAV+A + +V EY+R GF
Sbjct: 783 ---GAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGF 817
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
P +L GE GD G+DP GL+ PD F + + E+ H R AML G ++P+ K
Sbjct: 359 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK 413
>gi|308154410|gb|ADO15273.1| light harvesting complex from photosystem I type b [Oxytropis
splendens]
Length = 97
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK- 178
F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 1 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP 59
Query: 179 -NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YRI G
Sbjct: 60 SLVHAQSILAIWAVQVILMGAVEGYRIAGG 89
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL 64
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+ P GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 12 PTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLPEVFTNIGILN 71
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 72 VPK--WYDAG 79
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 195
P+ W+ D + YF + + +V ++ V +
Sbjct: 119 APQ--WY-------DASKSEYFASSSTLFVVEFILFHYVEI 150
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 127
Query: 152 ANCGPEAVW-FKTGALL 167
A PEA+ F G+LL
Sbjct: 128 AGAQPEAIAPFSFGSLL 144
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGD+G+DP G+S ++ AY E+IH RWAMLG AG + PE G
Sbjct: 97 YLDGTLPGDFGFDPLGMSDPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGGMG 156
Query: 152 ---ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEI 192
A+ G VWFK+GA+ G T +Y+ I N+V AE+
Sbjct: 157 IIPADTG--LVWFKSGAIPPQG-TFDYWADPTTIFWVNMVLMNFAEV 200
>gi|412985267|emb|CCO20292.1| unknown [Bathycoccus prasinos]
Length = 277
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 83/204 (40%), Gaps = 63/204 (30%)
Query: 52 KKAAPPAKS-KPVAVSPVNEEL-AKWYGPDRRIFLPEGLLD----RSEIPEYLTGEVPGD 105
KKAAP K+ PV +P+ + AK ++ P G D +E P +L G +PGD
Sbjct: 14 KKAAPAKKTVTPVKKAPIKKSPPAKKPATQKKFTPPSGERDLWYPNAEAPAWLDGSMPGD 73
Query: 106 YGYDPFGLSK---------------------------------KPD-----------DFS 121
G+DPFGLSK KP D +
Sbjct: 74 RGFDPFGLSKPTEYLQFDLDRLDGSAAKNPSGNVIGKLKKTDNKPTERTIVPFNEAFDIN 133
Query: 122 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI- 180
+++ EL+H+RWAMLG G I EA G W G + L+ Y G N+
Sbjct: 134 RFRECELLHSRWAMLGLVGVIFGEA--------GTGVAWQDAGKVELE--QTQYLGFNLW 183
Query: 181 --PINLVFAVIAEIVLVGGAEYYR 202
NL E++LVG E+YR
Sbjct: 184 GEGSNLAALTAIEVLLVGTLEFYR 207
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSK-------YQAYELIHARWAMLGAAGFIIPEAFNK 149
YL G +PGD+G+DP GL S EL+HARWAMLGAAG + PE
Sbjct: 13 YLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLAPEYLAH 72
Query: 150 FGANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
P+A +WFKTG L +Y +P+ ++FAV ++V++G AE R
Sbjct: 73 --EKVIPKATGLLWFKTGFLPQASAGFDY---GLPLGVLFAV--QMVMMGVAEGLR 121
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF------- 147
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA
Sbjct: 56 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVE 115
Query: 148 -NKFGANCGPEAVWF 161
K+ A G +A +F
Sbjct: 116 AQKWAAIPGSQATYF 130
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ AVR S S PS+ S+K + + PV N +L W+ + +
Sbjct: 314 AEAVRQSFGARSLPSSIGS----SRKGSFVVKAAAPVKKGGANRQL--WFASKQSL---- 363
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAG 140
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG
Sbjct: 364 ---------SYLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAG 413
Query: 141 FIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 199
I PE K G A+ WF+TG + G T NY+ N + + E+ +G AE
Sbjct: 414 AIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAE 467
Query: 200 YYRITN 205
+ R+ +
Sbjct: 468 HRRLQD 473
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 37/189 (19%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AVR S S PS+ S +K + A S PV + N +L W+ + +
Sbjct: 16 AEAVRQSFGARSLPSSIG-----SSRKGSFVVKAASSPPVKQNGANRQL--WFASKQSL- 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 68 ------------SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLG 114
Query: 138 AAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 196
AAG I PE K G A+ WF+TG + G T NY+ N + + E+ +G
Sbjct: 115 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMG 168
Query: 197 GAEYYRITN 205
AE+ R +
Sbjct: 169 FAEHRRFQD 177
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ AVR S S PS+ S+K + + PV N +L W+ + +
Sbjct: 298 AEAVRQSFGARSLPSSIGS----SRKGSFVVKAAAPVKKGGANRQL--WFASKQSL---- 347
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAG 140
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG
Sbjct: 348 ---------SYLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAG 397
Query: 141 FIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 199
I PE K G A+ WF+TG + G T NY+ N + + E+ +G AE
Sbjct: 398 AIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAE 451
Query: 200 YYRITN 205
+ R+ +
Sbjct: 452 HRRLQD 457
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 37/189 (19%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AVR S S PS+ S +K + A S PV + N +L W+ + +
Sbjct: 16 AEAVRQSFGARSLPSSIG-----SSRKGSFVVKAASSPPVKQNGANRQL--WFASKQSL- 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 68 ------------SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLG 114
Query: 138 AAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 196
AAG I PE K G A+ WF+TG + G T NY+ N + + E+ +G
Sbjct: 115 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMG 168
Query: 197 GAEYYRITN 205
AE+ R +
Sbjct: 169 FAEHRRFQD 177
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 32/190 (16%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
LN S+ +R + P PVA + A + + +P E WY
Sbjct: 12 LNASTFIRGAGP------VRAPVAKSGRNAAPKRSVVRAGGAAPEPSERPLWY------- 58
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
++ PE+L G +PGDYG+DP G P EL+HARWAMLG AG +
Sbjct: 59 ------PGTKAPEWLNGSLPGDYGFDPVGFGSSPSSLRWMVHAELVHARWAMLGVAGVLG 112
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 203
E + G W++ G ++YF + +V ++ V Y+ I
Sbjct: 113 QELVH---VTNGSIPHWYEAG-------KVSYFADTPTLIVVMHILMGFVET--KRYFDI 160
Query: 204 TNGFGGQASP 213
N G QA P
Sbjct: 161 VNP-GSQAQP 169
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
L S P +L GE+PGD+G+DP GL PD ++ EL+H+RWAM AG ++ E
Sbjct: 32 LPGSTPPAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVHSRWAMAAVAGILVQEIVR 91
Query: 149 KFGANCGPEAVWFKTGA 165
P+ W+ G+
Sbjct: 92 -------PDVFWYSAGS 101
>gi|359754921|gb|AEV59650.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 201
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 40/191 (20%)
Query: 27 SSAVRTSAPGASNPSTF---KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AV+ S S S+F + + K + PP K A P+ W+ ++ +
Sbjct: 13 AEAVKQSFGARSPQSSFAFSRKGSFIVKATSTPPVKQGAGANRPL------WFASEQSL- 65
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 66 ------------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLG 112
Query: 138 AAGFIIPEAFNKFGANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
AAG I PE K A PE WF+TG + G T Y+ N + + E+ L
Sbjct: 113 AAGAIAPEILGK--AGLIPEETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMAL 164
Query: 195 VGGAEYYRITN 205
+G AE+ R+ +
Sbjct: 165 MGFAEHRRLQD 175
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 68/133 (51%), Gaps = 23/133 (17%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHAR 132
DR++F + YL G PGD+GYDP GL K P+ K+ AY E+IH R
Sbjct: 53 DRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCR 106
Query: 133 WAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 189
+AMLG AG + PE K G A G VWFKTG + +G +Y+ + + +
Sbjct: 107 YAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGVIPSEGQ-YDYWASPLALFWI---- 159
Query: 190 AEIVLVGGAEYYR 202
E+VL+ AE R
Sbjct: 160 -EVVLMQFAELRR 171
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 14/116 (12%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGRLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKA 123
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G A+ WF+TG + G T NY+ N + + E+ L+G AE+ R +
Sbjct: 124 GLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQD 173
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 37/189 (19%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AVR S S PS+ S +K + A S PV + N +L W+ + +
Sbjct: 16 AEAVRQSFGARSLPSSIG-----SSRKGSFVVKAASSPPVKQNGANRQL--WFASKQSL- 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 68 ------------SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLG 114
Query: 138 AAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 196
AAG I PE K G A+ WF+TG + G T NY+ N + + E+ +G
Sbjct: 115 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMG 168
Query: 197 GAEYYRITN 205
AE+ R +
Sbjct: 169 FAEHRRFQD 177
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ K+ AY ELIH RWAMLG AG + PE
Sbjct: 61 YLDGSLPGDYGFDPLGLSD-PEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGGM 119
Query: 151 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYY 201
G P+ VWFK G + G T +Y+ I + A + I + A+ Y
Sbjct: 120 GII--PQETGLVWFKAGMIPAQG-TYDYWASPFTIFWINAFLMNIAELRRAQDY 170
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG AG + + G
Sbjct: 70 PPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLLRVTGIRK 129
Query: 155 GPEAVWFKTGAL 166
P VW++ GA+
Sbjct: 130 LP--VWYEAGAV 139
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 14/116 (12%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKA 123
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G A+ WF+TG + G T NY+ N + + E+ L+G AE+ R +
Sbjct: 124 GLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQD 173
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF------- 147
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVE 76
Query: 148 -NKFGANCGPEAVWF 161
K+ A G +A +F
Sbjct: 77 AQKWAAIPGSQATYF 91
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 14/121 (11%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPE 145
S+ YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE
Sbjct: 60 SQSLTYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 146 AFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 204
K G A+ WF+TG + G T +Y+ N + + E+ L+G AE+ R+
Sbjct: 119 ILGKAGLIPAETALPWFQTGVIPPAG-TYSYWADNYTL-----FVLEMALMGFAEHRRLQ 172
Query: 205 N 205
+
Sbjct: 173 D 173
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P + Y EL + RWAMLG AG ++PE K G
Sbjct: 61 PAYLNGSLAGDNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLVPEVLTKIGLIN 120
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
P +W+ D + YF P + +F + E +L E R
Sbjct: 121 AP--LWY-------DAGKVEYFA---PASTLFVI--EFILFHYVEIRR 154
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 35/62 (56%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L E+PGDYG+DP L K P+D Y EL H RWAMLG AG PE G +
Sbjct: 9 PAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEILTNMGISN 68
Query: 155 GP 156
P
Sbjct: 69 LP 70
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
SE EYL ++PG++ +DP L K+ +Y+ ELIH RWAMLGAAG + E
Sbjct: 41 SEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGL-- 97
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
W+ + G+ +FG +P ++ + E+V + AE R N
Sbjct: 98 ------GNWYDAPLWAVTGDKPTWFGIEVPFDIATILGVEVVAMAVAEGLRNDN 145
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGL--GNW 114
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
W + GN Y G +P + ++A
Sbjct: 115 VEAQKW-----AAIPGNQATYLGAPVPWGYLPVILA 145
>gi|413946552|gb|AFW79201.1| light harvesting complex mesophyll7 [Zea mays]
Length = 244
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+
Sbjct: 50 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSPLG 106
Query: 135 MLGAAGFIIPEA 146
G A +P A
Sbjct: 107 HAGRARLRLPGA 118
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
R+ + + + P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G
Sbjct: 43 RVSMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPG 102
Query: 141 FIIPEAF 147
+IPEA
Sbjct: 103 VLIPEAL 109
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 98/213 (46%), Gaps = 50/213 (23%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
A +++SS A++ A+++LG SS+ R V+ + +A PPAK
Sbjct: 4 QALVSSSSITASAEAARQILGGRSFQSSSSRK-------------VSFAVRAEATPPAKQ 50
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
G DR+++ + YL G +PGDYG+DP GLS P+
Sbjct: 51 ----------------GADRQLWFAS-----KQSLSYLDGSLPGDYGFDPLGLS-DPEGT 88
Query: 121 S-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNT 172
+ AY E+I+ R+AMLGA G I PE K G PE WFKTG + G T
Sbjct: 89 GGFIEPSWLAYGEIINGRYAMLGAVGAIAPEILGKAGL-IPPETALPWFKTGVIPPAG-T 146
Query: 173 LNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
+Y+ P L + E+ L+G AE+ R +
Sbjct: 147 YDYWAD--PYTL---FVFELALMGFAEHRRFQD 174
>gi|356524850|ref|XP_003531041.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 1 [Glycine max]
gi|356524852|ref|XP_003531042.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 2 [Glycine max]
Length = 258
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G I +A++ F
Sbjct: 70 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGVPWFE 129
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 130 AGADPNAIAPFSFGSLL 146
>gi|255646598|gb|ACU23773.1| unknown [Glycine max]
Length = 258
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G I +A++ F
Sbjct: 70 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGVPWFE 129
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 130 AGADPNAIAPFSFGSLL 146
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YL G + GD G+DP L++ P+D + ++++ RWAMLG AG +IPE K G
Sbjct: 41 QSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGL 100
Query: 153 NCGPEAVWFK 162
PE W +
Sbjct: 101 MNAPE--WLR 108
>gi|359754917|gb|AEV59648.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis arctobia]
Length = 198
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 40/191 (20%)
Query: 27 SSAVRTSAPGASNPSTF---KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AV+ S S S+F + + K + PP K A P+ W+ ++ +
Sbjct: 13 AEAVKQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPL------WFASEQSL- 65
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 66 ------------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLG 112
Query: 138 AAGFIIPEAFNKFGANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
AAG I PE K A PE WF+TG + G T NY+ N + + E+ L
Sbjct: 113 AAGAIAPEILGK--AGLIPEETALPWFQTGVIPPAG-TYNYWADNYTL-----FVLEMAL 164
Query: 195 VGGAEYYRITN 205
+G AE+ + +
Sbjct: 165 MGFAEHRXLQD 175
>gi|110224748|emb|CAL07974.1| chlorophyll a/b-binding protein, photosystem I [Platanus x
acerifolia]
Length = 167
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L P++ +++ ELIH RWAML G ++PEA
Sbjct: 56 PPYLDGSAPGDFGFDPLLLGAVPENLERFKESELIHCRWAMLAVPGILVPEAL 108
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 26/163 (15%)
Query: 50 SKKKAAPPAKSKPVAVSPVNE-ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
S ++ + +S+ + PV + + W+ D+ + YL G +PGDYG+
Sbjct: 43 SSRRTSFTVRSQASSNKPVKQGDRQLWFASDQSL-------------SYLDGSLPGDYGF 89
Query: 109 DPFGLS--KKPDDFSK--YQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFK 162
DP GL + P F + + Y E+I+ R+AMLGA G I PE K G A+ WF+
Sbjct: 90 DPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFQ 149
Query: 163 TGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
TG + G T NY+ P L + E+ L+G AE+ R+ +
Sbjct: 150 TGVIPPAG-TYNYWAD--PFTL---FVLEMALMGFAEHRRLQD 186
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD+G+DP GL + P++ Y EL+HAR+AM G AG ++ + G +
Sbjct: 66 PPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGISN 125
Query: 155 GPEAVWFKTGAL 166
P VW++ GA+
Sbjct: 126 LP--VWYEAGAV 135
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 72 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 131
Query: 152 ANCGPEAV 159
A P A+
Sbjct: 132 AGADPNAI 139
>gi|356512075|ref|XP_003524746.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein
CP24 10A, chloroplastic-like [Glycine max]
Length = 258
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G I +A++ F
Sbjct: 70 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGVPWFE 129
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 130 AGADPNAIAPFSFGSLL 146
>gi|359754927|gb|AEV59653.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis campestris subsp. johannensis]
Length = 197
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 40/191 (20%)
Query: 27 SSAVRTSAPGASNPSTF---KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AV+ S S S+F + + K + PP K A P+ W+ ++ +
Sbjct: 9 AEAVKQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPL------WFASEQSL- 61
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 62 ------------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLG 108
Query: 138 AAGFIIPEAFNKFGANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
AAG I PE K A PE WF+TG + G T NY+ N + + E+ L
Sbjct: 109 AAGAIAPEILGK--AGLIPEETALPWFQTGVIPPAG-TYNYWADNYTL-----FVLEMAL 160
Query: 195 VGGAEYYRITN 205
+G AE+ + +
Sbjct: 161 MGFAEHRXLQD 171
>gi|307106621|gb|EFN54866.1| hypothetical protein CHLNCDRAFT_134943 [Chlorella variabilis]
Length = 268
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
+P+YL G + GD G+DP GL P+ S E+ H R AM G AG ++ + GA+
Sbjct: 58 VPDYLDGSLVGDNGFDPLGLGSSPEQLSWNVHAEVFHGRLAMTGCAGILLTSLLHAGGAD 117
Query: 154 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
PE W++ G + Y KN ++ V + IVL G AE+ R+ +
Sbjct: 118 V-PE--WYEAGKV--------YMEKNPNVSFGALVYSTIVLSGFAEFKRLND 158
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 73 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 132
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G LL
Sbjct: 133 AGADPNAIAPFSFGTLL 149
>gi|359754919|gb|AEV59649.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis maydelliana]
Length = 186
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 40/191 (20%)
Query: 27 SSAVRTSAPGASNPSTF---KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AV+ S S S+F + + K + PP K A P+ W+ ++ +
Sbjct: 1 AEAVKQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPL------WFASEQSL- 53
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 54 ------------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLG 100
Query: 138 AAGFIIPEAFNKFGANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
A G I PE K A PE WF+TG + G T NY+ N + + E+ L
Sbjct: 101 AXGAIAPEILGK--AGLIPEETALPWFQTGVIPPAG-TYNYWADNYTL-----FVXEMAL 152
Query: 195 VGGAEYYRITN 205
+G AE+ + +
Sbjct: 153 MGXAEHRXLQD 163
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAML G + +A+ F
Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFE 132
Query: 152 ANCGPEAV 159
A P AV
Sbjct: 133 AGADPGAV 140
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S P +L G +P DYG+DP L P++ + EL+H RWAMLG AG + PE K G
Sbjct: 49 SPAPAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIG 108
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 73 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 132
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G LL
Sbjct: 133 AGADPNAIAPFSFGTLL 149
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 16 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 72
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G +
Sbjct: 73 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFS------ 126
Query: 160 WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
W G D YF P + +F V +++L E R +
Sbjct: 127 WPGAGVAWYDAGKFEYFA---PASSLFGV--QMLLFAWVEIRRYQD 167
>gi|449446427|ref|XP_004140973.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
gi|449497079|ref|XP_004160305.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
Length = 255
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 127 AGADPGAIAPFSFGSLL 143
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
D + P +L G +PGD+G+DP GL P YQ EL++ARWAM+ AG E
Sbjct: 55 DSTVAPAHLDGTLPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAVAGITATEVL-- 112
Query: 150 FGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
GP W+ GA D L P+
Sbjct: 113 ---GIGP--AWYDVGAADFDFPPLALLAIQFPV 140
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GD+G+DP GL + P D Y EL+H+R+AM G AG + + G
Sbjct: 12 PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASGRTD 71
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
P VWF+ GA D +T F + +++L+G E R
Sbjct: 72 IP--VWFEAGATKFDFADTTTLF------------VVQLILMGFVETKR 106
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 16 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 72
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G +
Sbjct: 73 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFS------ 126
Query: 160 WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
W G D YF P + +F V +++L E R +
Sbjct: 127 WPGAGVAWYDAGKFEYFA---PASSLFGV--QMLLFAWVEIRRYQD 167
>gi|308154406|gb|ADO15271.1| light harvesting complex from photosystem I type b [Oxytropis
campestris subsp. johannensis]
gi|308154408|gb|ADO15272.1| light harvesting complex from photosystem I type b [Oxytropis
maydelliana]
gi|308154412|gb|ADO15274.1| light harvesting complex from photosystem I type b [Oxytropis
arctobia]
Length = 96
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-- 178
+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPS 59
Query: 179 NIPINLVFAVIA-EIVLVGGAEYYRITNG 206
+ + A+ A +++L+G E YRI G
Sbjct: 60 LVHAQSILAIWAVQVILMGAVEGYRIAGG 88
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 69/140 (49%), Gaps = 29/140 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP G+S P+ ++ AY E+IH RWAMLG AG + PE
Sbjct: 81 YLDGTLPGDFGFDPLGMSD-PEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGM 139
Query: 151 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYY--- 201
G PE+ VWF +GA+ G T +Y+ + I N+ AEI G +Y+
Sbjct: 140 GVI--PESTGLVWFTSGAIPPQG-TFDYWANPMTIFWVNMCMMNFAEIKR--GQDYWFPG 194
Query: 202 --------RITNGFGGQASP 213
GFGG +P
Sbjct: 195 SQAETPLLGWEKGFGGSGNP 214
>gi|270308992|dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 127 AGADPGAIAPFSFGSLL 143
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
P YLTGE PGD G+DP GLS P+ F + + E+IH R AML G ++P+ K
Sbjct: 95 PAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGALVPDFLGK 149
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GD+G+DP GL++ P Y EL+H R+AMLG G ++ + G +
Sbjct: 64 PPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISK 123
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
P VWF+ GA+ D NT F + ++VL+G E R +
Sbjct: 124 IP--VWFEAGAVKYDFANTKTLF------------LVQLVLMGFVETKRYMD 161
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 37/173 (21%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S+ K + + +A PP K G DR+++ + YL G
Sbjct: 30 SSRKSASFVVRAEATPPVKQ----------------GADRQLWFAS-----KQSLSYLDG 68
Query: 101 EVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANC 154
+PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE F G
Sbjct: 69 SLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGL-I 126
Query: 155 GPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
PE WFKTG + G T NY+ P L + E+ L+G AE+ R +
Sbjct: 127 PPETALPWFKTGVIPPAG-TYNYWAD--PYTL---FVFEMALMGFAEHRRFQD 173
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 2 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 58
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G +
Sbjct: 59 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFS------ 112
Query: 160 WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
W G D YF P + +F V +++L E R +
Sbjct: 113 WPGAGVAWYDAGKFEYFA---PASSLFGV--QMLLFAWVEIRRYQD 153
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 128
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 129 AGADPGAIAPFSFGSLL 145
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
++++PV + V E A W LP G + P +L G +PGD+G+DP GL P
Sbjct: 25 SRARPVRQTVVRAERALW--------LPGG-----DAPAHLDGSLPGDFGFDPLGLGADP 71
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
+ + + E +HARWAML AG + E P+ W++
Sbjct: 72 ERLAWFAESERVHARWAMLAVAGIAVQEVVR-------PDVFWYE 109
>gi|296081542|emb|CBI20065.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 122
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 25/152 (16%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K A+ PV + G DR ++ + YL G +PGDYG+DP GLS P+
Sbjct: 43 KAAAIPPVKQ------GSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLS-DPEGT 90
Query: 121 S-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTL 173
K+ AY E+I+ R+AMLGA G I PE K G A+ WF+TG G T
Sbjct: 91 GGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TY 149
Query: 174 NYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
NY+ + + + E+ L+G AE+ R +
Sbjct: 150 NYWADSYTL-----FVFEMALMGFAEHRRFQD 176
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 12/108 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GDYG+DP L ++P Y EL+H R+AMLGAAG I+ K G
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
PE W+ G ++++ N +++ P L I ++ L+G AE R
Sbjct: 100 -PE--WYDAGKVVVEKNNIDF-----PTLL----ITQLYLMGWAETKR 135
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 14/116 (12%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 68 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 127 GLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQD 176
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 92 SEIPEYL----TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
S+IP +L + G++G+DP GL K P + YQ ELIH R AM G AG +IP
Sbjct: 28 SQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWYQQAELIHCRTAMTGVAGILIPGLL 87
Query: 148 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 192
K GA PE W+ G + ++ N+ +G + + L E+
Sbjct: 88 TKAGALNVPE--WYDAGKVAIE-NSFAPWGTLLAVQLFLCGFVEV 129
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
LLD PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A+
Sbjct: 66 LLD----PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 121
Query: 148 NK---FGANCGPEAVW-FKTGALL 167
+ F A P A+ F G+LL
Sbjct: 122 SGIPWFEAGADPGAIAPFSFGSLL 145
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 14/116 (12%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 68 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 127 GLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQD 176
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 14/116 (12%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 68 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 127 GLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQD 176
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFE 129
Query: 152 ANCGPEAVW-FKTGALL 167
A P+A+ F G+LL
Sbjct: 130 AGAQPDAIAPFSFGSLL 146
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVIGIFVGQAWSGIPWFE 127
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 128 AGADPGAIAPFSFGSLL 144
>gi|192764599|gb|ACF05843.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764603|gb|ACF05845.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 95 AGADPGAIAPFSFGSLL 111
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 16/117 (13%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGA G I PE K
Sbjct: 65 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKL 123
Query: 151 GANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G PE WFKTG G T NY+ P L + E+ L+G AE+ R +
Sbjct: 124 GL-IPPETALPWFKTGVFPPAG-TYNYWAD--PYTL---FVFEMALMGFAEHRRFQD 173
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFE 129
Query: 152 ANCGPEAVW-FKTGALL 167
A P+A+ F G+LL
Sbjct: 130 AGAQPDAIAPFSFGSLL 146
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP L++ P++ + EL++ RWA LG AG ++PE G
Sbjct: 63 PNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLIN 122
Query: 155 GPEAVWFKTG 164
P+ W+ G
Sbjct: 123 VPK--WYDAG 130
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 128
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 129 AGADPGAIAPFSFGSLL 145
>gi|169261096|gb|ACA52196.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 109
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
WYGPDR +L G E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R
Sbjct: 55 WYGPDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 109
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L D + P +L G +PGD+G+DP GL P YQ EL+++RWAM+ AG +A
Sbjct: 54 LRDSAVAPPHLDGTLPGDFGFDPLGLGADPARLKYYQEAELMNSRWAMMAVAGITTTDAL 113
Query: 148 NKFGANCGPEAVWFKTGA 165
N G W++ GA
Sbjct: 114 NIGGP-------WYEAGA 124
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 14/116 (12%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 68 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G A+ WF+TG + T NY+ + + + E+ L+G AE+ R +
Sbjct: 127 GLIPQETALPWFRTG-FIPPAGTYNYWADSYTL-----FVFEMALMGFAEHRRFQD 176
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 33/51 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P++L G + GDYG+DP GL + YQ EL+HARWAMLG AG PE
Sbjct: 52 PKHLDGTMAGDYGFDPLGLGEDKVALQWYQQAELVHARWAMLGVAGMAAPE 102
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++ +++ E+ H RWAML G ++PEA
Sbjct: 26 PVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEALGL----- 80
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYR 202
W K + G YFG +P NL + E + + AE+ R
Sbjct: 81 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR 127
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 16/108 (14%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP G+S P+ ++ AY E+IH RWAMLG AG + PE +
Sbjct: 74 YLDGTLPGDFGFDPLGMSD-PEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGQ- 131
Query: 151 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEI 192
A PE+ VWF +GA+ G T +Y+ + I N+ AEI
Sbjct: 132 -AGLIPESTGLVWFTSGAIPPQG-TFDYWANPMTIFWVNMCMMNFAEI 177
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +++ ELIH WAML G ++PEA
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGL----- 105
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
W K + G Y G +P + ++A E + + E+ R
Sbjct: 106 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR 152
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GDYG+DP L ++P Y EL+H R+AMLGAAG I+ K G
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
PE W+ G ++++ N +++ P +V + L+G AE R
Sbjct: 100 -PE--WYDAGKVVVEKNNIDF-----PTLMVI----QFYLMGWAETKR 135
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 127
Query: 152 ANCGPEAV 159
A P A+
Sbjct: 128 AGADPGAI 135
>gi|8954298|gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 129
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 130 AGADPNAIAPFSFGSLL 146
>gi|192764577|gb|ACF05832.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVGIFVGQAWS 88
>gi|297740653|emb|CBI30835.3| unnamed protein product [Vitis vinifera]
Length = 148
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 22/90 (24%)
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
P+ F+K + E+IH RWAMLGA G + PE ++ G G EAVWFK GA
Sbjct: 22 PNTFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGA----------- 69
Query: 177 GKNIPINLVFAVIAEIVLVGGAEYYRITNG 206
+ +E++L+G E YRI G
Sbjct: 70 ----------QIFSEVILMGAVEGYRIAGG 89
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 12/115 (10%)
Query: 97 YLTGEVPGDYGYDPFGLS--KKPDDFSK--YQAY-ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGDYG+DP GL + P F + + AY E+I+ R+AMLGA G I PE K G
Sbjct: 80 YLDGSLPGDYGFDPLGLMDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGKLG 139
Query: 152 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
A+ WF+TG + G T +Y+ P L + E+ L+G AE+ R+ +
Sbjct: 140 LIPQETALPWFRTGVIPPAG-TYDYWAD--PFTL---FVLEMALMGFAEHRRLQD 188
>gi|192764617|gb|ACF05852.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 95 AGADPGAIAPFSFGSLL 111
>gi|145079082|tpg|DAA05897.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Acetabularia acetabulum]
Length = 275
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 69/176 (39%), Gaps = 58/176 (32%)
Query: 77 GPDRRIFLPEGL-LDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 118
G R F+ + L L + P +L G +PGD G+DP GL+K +
Sbjct: 41 GAGYRKFVGDALWLPNTTRPVWLDGSLPGDRGFDPLGLAKPTEYLQVELDEQNINMGVNK 100
Query: 119 ----------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
+++ ELIH RWAML G I+ E
Sbjct: 101 AGGIIGSYQESAELVSSEKRLQPYKEVFGLERFRECELIHGRWAMLACLGCIVAE----- 155
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
G V W + G + LDG YF N+P ++ V E +LVGGAE YR T
Sbjct: 156 ----GATGVSWVEAGKVELDGA--QYFNFNLPFSITQLVWIEAILVGGAEIYRNTE 205
>gi|116309995|emb|CAH67022.1| H0523F07.10 [Oryza sativa Indica Group]
Length = 252
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 64 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 123
Query: 152 ANCGPEAVW-FKTGALL 167
A PEA+ F +G+LL
Sbjct: 124 AGAQPEAIAPFSSGSLL 140
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 22/125 (17%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++LP + P +L G +PGDYGYDP GL+ PD + + E + RWAM G
Sbjct: 38 DRTLWLPN-----TVPPAHLNGTLPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGV 92
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 198
AG + +A + G+ A WF GA L PI L E V+ G
Sbjct: 93 AGILFTDALH-IGS-----APWFSIGAEL-----------ESPIPLWGLATIEFVIFGFL 135
Query: 199 EYYRI 203
E R+
Sbjct: 136 EMKRL 140
>gi|192764579|gb|ACF05833.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764581|gb|ACF05834.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764583|gb|ACF05835.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764585|gb|ACF05836.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764587|gb|ACF05837.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764589|gb|ACF05838.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764601|gb|ACF05844.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764605|gb|ACF05846.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764607|gb|ACF05847.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764609|gb|ACF05848.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764611|gb|ACF05849.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764613|gb|ACF05850.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764615|gb|ACF05851.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764619|gb|ACF05853.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764621|gb|ACF05854.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVW-FKTGALL 167
A P A+ F G+LL
Sbjct: 95 AGADPGAIAPFSFGSLL 111
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GDYG+DP GL PD YQ EL++ARWAM+ AG + E
Sbjct: 37 PAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGIVGTEV-------A 89
Query: 155 GPEAVWFKTG 164
G E W++ G
Sbjct: 90 GIEPRWWEAG 99
>gi|225447745|ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Vitis vinifera]
gi|147804704|emb|CAN71620.1| hypothetical protein VITISV_015544 [Vitis vinifera]
Length = 257
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 122
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,042,759,795
Number of Sequences: 23463169
Number of extensions: 190092254
Number of successful extensions: 480786
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 356
Number of HSP's that attempted gapping in prelim test: 476229
Number of HSP's gapped (non-prelim): 3279
length of query: 217
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 80
effective length of database: 9,144,741,214
effective search space: 731579297120
effective search space used: 731579297120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)