Query 027863
Match_columns 217
No_of_seqs 257 out of 973
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 1.4E-38 3.1E-43 286.0 10.9 158 15-205 6-206 (286)
2 PLN00025 photosystem II light 100.0 1.6E-36 3.4E-41 270.2 11.5 130 72-205 43-175 (262)
3 PLN00171 photosystem light-ha 100.0 8.3E-35 1.8E-39 265.0 10.1 134 69-205 97-235 (324)
4 PLN00098 light-harvesting comp 100.0 1.5E-33 3.3E-38 251.6 10.8 115 72-205 54-168 (267)
5 PLN00101 Photosystem I light-h 100.0 9E-33 2E-37 244.7 11.0 114 73-205 46-159 (250)
6 PLN00048 photosystem I light h 100.0 5.1E-32 1.1E-36 241.4 11.9 119 76-206 38-163 (262)
7 PLN00097 photosystem I light h 100.0 2.9E-32 6.3E-37 240.7 9.2 113 77-207 41-153 (244)
8 PLN00170 photosystem II light- 100.0 1.4E-30 2.9E-35 231.4 10.7 116 78-210 49-165 (255)
9 PLN00147 light-harvesting comp 100.0 3.5E-29 7.6E-34 222.1 9.3 113 75-205 40-152 (252)
10 PLN00099 light-harvesting comp 100.0 7.3E-29 1.6E-33 219.1 8.6 114 78-204 42-157 (243)
11 PLN00100 light-harvesting comp 100.0 1.1E-28 2.4E-33 218.1 8.8 103 78-205 33-135 (246)
12 PF00504 Chloroa_b-bind: Chlor 99.8 7.1E-21 1.5E-25 155.5 7.3 97 94-206 1-99 (156)
13 PLN00089 fucoxanthin-chlorophy 99.7 1.9E-17 4.2E-22 143.8 7.1 57 95-152 47-104 (209)
14 PLN00147 light-harvesting comp 99.6 2.9E-16 6.3E-21 139.8 4.9 60 95-154 172-231 (252)
15 PLN00089 fucoxanthin-chlorophy 99.6 7.3E-16 1.6E-20 133.9 5.2 54 100-153 153-207 (209)
16 PLN00048 photosystem I light h 99.6 1.3E-15 2.8E-20 136.4 3.8 55 100-154 187-241 (262)
17 PLN00025 photosystem II light 99.5 5.3E-15 1.1E-19 132.4 4.4 55 99-154 183-237 (262)
18 PLN00187 photosystem II light- 99.5 1.4E-14 2.9E-19 131.2 4.4 56 99-154 211-266 (286)
19 PLN00099 light-harvesting comp 99.5 1.7E-14 3.6E-19 128.0 4.3 53 100-153 164-217 (243)
20 PLN00098 light-harvesting comp 99.5 1.9E-14 4.2E-19 129.1 4.6 55 100-154 191-246 (267)
21 PF00504 Chloroa_b-bind: Chlor 99.4 7.2E-14 1.6E-18 114.2 4.5 50 97-146 107-156 (156)
22 PLN00171 photosystem light-ha 99.4 8.4E-14 1.8E-18 127.7 4.3 53 102-154 252-304 (324)
23 PLN00097 photosystem I light h 99.4 1.3E-13 2.7E-18 122.5 4.5 47 108-154 182-228 (244)
24 PLN00100 light-harvesting comp 99.3 5.1E-13 1.1E-17 118.8 3.6 49 101-154 143-191 (246)
25 PLN00120 fucoxanthin-chlorophy 99.3 1.6E-12 3.4E-17 112.7 4.8 51 100-150 142-195 (202)
26 PLN00120 fucoxanthin-chlorophy 99.3 2.4E-12 5.2E-17 111.5 5.7 44 108-151 47-93 (202)
27 PLN00101 Photosystem I light-h 99.3 1.5E-12 3.3E-17 116.1 3.4 48 102-154 184-231 (250)
28 PLN00170 photosystem II light- 99.3 2.2E-12 4.7E-17 115.3 4.1 53 101-154 190-251 (255)
29 PHA02337 putative high light i 98.0 4.2E-06 9E-11 54.5 2.4 29 124-152 3-31 (35)
30 PLN00014 light-harvesting-like 97.4 4.9E-05 1.1E-09 67.8 0.9 31 123-153 159-189 (250)
31 PLN00084 photosystem II subuni 96.3 0.0018 3.9E-08 56.0 1.7 34 120-153 132-166 (214)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.4e-38 Score=286.00 Aligned_cols=158 Identities=30% Similarity=0.595 Sum_probs=126.3
Q ss_pred chhhhcCCccccccccccCCCCCCCCCCCcceEeeccCCCCCCCCCCCCcCCCchhhhhhhhCCCCccccCcCccCCCCC
Q 027863 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94 (217)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~~~~~~~~~k~~a~~~~~~~~~~w~g~~R~~~lp~g~~~~~~~ 94 (217)
..|.|+|.++.. +.++..+++++|+.++...++ ++++ +...+|+++|++|||+ .++
T Consensus 6 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~r~~w~p~-----~~~ 61 (286)
T PLN00187 6 AASSFMGTRVPD-----------VASNSGRIVARFGFGKKKKAA-KKAK-------KKSSKVGADRPLWFPG-----AKA 61 (286)
T ss_pred cchhhhhhhhcc-----------cccCccchhhhhccCcccccC-Cccc-------cCccCCCCCccccCCC-----CCC
Confidence 347789988752 344677888888743221111 1111 1235789999999996 899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchh-------------------------------------------HHHHHHHHHhhc
Q 027863 95 PEYLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHA 131 (217)
Q Consensus 95 P~yL~G~~PGD~GfDPlGL~~dpe~-------------------------------------------~~~~r~~EL~hG 131 (217)
|+||||++||||||||+||+++||. ++|||++||+||
T Consensus 62 P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHG 141 (286)
T PLN00187 62 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHG 141 (286)
T ss_pred cccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhh
Confidence 9999999999999999999999986 599999999999
Q ss_pred hhhHhhhhhhhhhhhhccCCCCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 132 RlAMLa~~G~l~~e~l~~~G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g 205 (217)
||||||++||+++|+++ +..||++|.+.+.++ .+|++++.++.+..++++|+++||++|.+|+.+
T Consensus 142 RwAMLAvaG~lvpEll~--------G~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~ 206 (286)
T PLN00187 142 RWAMLATLGALSVEALT--------GVTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE 206 (286)
T ss_pred HHHHHHhhchhhHHhcc--------CCccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999985 236999998766444 469999888877788899999999999999764
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=270.15 Aligned_cols=130 Identities=45% Similarity=0.889 Sum_probs=115.0
Q ss_pred hhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCC
Q 027863 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (217)
Q Consensus 72 ~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G 151 (217)
.+.|||+||++||| ++. .++|+||||++||||||||+||++|++++++||++||+||||||||++||+++|++++.|
T Consensus 43 ~~~~~g~~R~~~l~--p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 43 GSIWYGPDRPKYLG--PFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cccccCCCCccccC--Ccc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 46799999999993 444 589999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCcccccccccccCCCccCCCCCCchh---hHHHHHHHHHHHHhhhhheeccC
Q 027863 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~---~~~~li~~evlLmG~~E~~R~~g 205 (217)
+... +.+||++|++++.+++++|++++..+ .+..++++|+++||++|.+|+++
T Consensus 120 ~~~~-~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~ 175 (262)
T PLN00025 120 VKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNG 175 (262)
T ss_pred cCcC-cccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccC
Confidence 7543 56899999988888889999988654 34556788999999999999876
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=8.3e-35 Score=265.00 Aligned_cols=134 Identities=41% Similarity=0.782 Sum_probs=115.9
Q ss_pred hhhhhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhc
Q 027863 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148 (217)
Q Consensus 69 ~~~~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~ 148 (217)
+++.+.|||++|++|||+ ++ .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||+++
T Consensus 97 ~~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~ 173 (324)
T PLN00171 97 ARNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLD 173 (324)
T ss_pred hcccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhc
Confidence 566789999999999964 22 379999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccccccccCCCccCCCCCCch-----hhHHHHHHHHHHHHhhhhheeccC
Q 027863 149 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 149 ~~G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p-----~~~~~li~~evlLmG~~E~~R~~g 205 (217)
+.|....++++||++|...+++..++|++.+.. ..+..+.++|+++|+++|++|+.+
T Consensus 174 ~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~ 235 (324)
T PLN00171 174 LFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCG 235 (324)
T ss_pred cCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeecc
Confidence 888765456789999988787777889887642 134456678999999999999875
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.5e-33 Score=251.59 Aligned_cols=115 Identities=37% Similarity=0.780 Sum_probs=102.6
Q ss_pred hhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCC
Q 027863 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (217)
Q Consensus 72 ~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G 151 (217)
++.+|+++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||++++.|
T Consensus 54 ~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g 128 (267)
T PLN00098 54 VCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG 128 (267)
T ss_pred ccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 566799999999996 789999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g 205 (217)
++. +..||++|+. +|++++ ..++++|+++||++|++||++
T Consensus 129 ~~~--~~~w~~Ag~~-------~~~~~~-----~~l~~~q~~lmG~~E~~R~~~ 168 (267)
T PLN00098 129 FIE--NFSWYDAGAR-------EYFADP-----TTLFVVQMVLMGWAEGRRWAD 168 (267)
T ss_pred ccc--ccccccccch-------hhccCc-----hHHHHHHHHHHHHHHHHHhhc
Confidence 764 4579999875 477765 235678999999999999876
No 5
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.98 E-value=9e-33 Score=244.72 Aligned_cols=114 Identities=33% Similarity=0.706 Sum_probs=101.4
Q ss_pred hhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCC
Q 027863 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (217)
Q Consensus 73 ~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~ 152 (217)
+.+++.+|++|+|+ .++|+||||++||||||||+||++|+++++++|++||+||||||||++|+++||++++.|+
T Consensus 46 ~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~ 120 (250)
T PLN00101 46 SFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120 (250)
T ss_pred cccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCC
Confidence 34556799999996 7899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 153 ~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g 205 (217)
++. +.||++|+. +|++.+ .+++++|+++||++|++|+++
T Consensus 121 ~~~--p~w~~ag~~-------~~~~~~-----~~l~~ie~~~mg~~E~~R~~~ 159 (250)
T PLN00101 121 INA--PQWYDAGKA-------EYFASS-----STLFVIEFILFHYVEIRRWQD 159 (250)
T ss_pred cCC--Cccccccch-------hhcccc-----hHHHHHHHHHHHHHHHHHhhc
Confidence 764 579999875 477654 356778999999999999876
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.97 E-value=5.1e-32 Score=241.35 Aligned_cols=119 Identities=35% Similarity=0.629 Sum_probs=100.6
Q ss_pred hCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCch------hHHHHHHHHHhhchhhHhhhhhhhhhhhhcc
Q 027863 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------DFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149 (217)
Q Consensus 76 ~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe------~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~ 149 (217)
|+++|++|+|+ .++|+||||++||||||||+||+ +++ +.+++|++||+||||||||++||++||++++
T Consensus 38 ~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~ 111 (262)
T PLN00048 38 QGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGK 111 (262)
T ss_pred CCCCCceecCC-----CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhcc
Confidence 46799999996 89999999999999999999997 443 5688999999999999999999999999999
Q ss_pred CCCCCCC-CcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccCC
Q 027863 150 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 206 (217)
Q Consensus 150 ~G~~~~p-~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~gG 206 (217)
.|++... ...||++|+... .+..+|++++ .+++++|+++||++|.+|+++-
T Consensus 112 ~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p-----~~l~~~~~~lmg~~E~~R~~~~ 163 (262)
T PLN00048 112 AGLIPQETALPWFQSGVIPP-AGTYDYWADP-----YTLFVLEMALMGFAEHRRAQDY 163 (262)
T ss_pred CCcccccccccccccccccc-ccccccccch-----hHHHHHHHHHhhheeeeccccc
Confidence 8886432 346999998533 4456799885 3567889999999999999873
No 7
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.97 E-value=2.9e-32 Score=240.74 Aligned_cols=113 Identities=31% Similarity=0.554 Sum_probs=98.6
Q ss_pred CCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCC
Q 027863 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (217)
Q Consensus 77 g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p 156 (217)
+++|++|||+ .++|+||||++||||||||+||++|++++++||++||+||||||||++||++||++++.|+..
T Consensus 41 ~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~-- 113 (244)
T PLN00097 41 AADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD-- 113 (244)
T ss_pred CCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--
Confidence 4699999996 789999999999999999999999999999999999999999999999999999999988754
Q ss_pred CcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccCCC
Q 027863 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207 (217)
Q Consensus 157 ~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~gG~ 207 (217)
.++||++|+.. .|+... ..++.+|+++||++|.+|+++-.
T Consensus 114 ~p~W~~Ag~~~------~~~~~~-----~~l~~i~~~lmg~~E~~r~~~~~ 153 (244)
T PLN00097 114 LPNWIDAAKWD------GYWAGA-----GPLFFIQMAMFNWAEIRRWQDMK 153 (244)
T ss_pred CCccccCCcch------hccccc-----hhHHHHHHHHHHHHHHHHhhccc
Confidence 35799999752 255432 34677899999999999998643
No 8
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.97 E-value=1.4e-30 Score=231.35 Aligned_cols=116 Identities=32% Similarity=0.593 Sum_probs=95.2
Q ss_pred CCCccccCcC-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCC
Q 027863 78 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (217)
Q Consensus 78 ~~R~~~lp~g-~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p 156 (217)
++|+.|+|+- .-+...+|+||||++||||||||+||++|+|++++||++||+||||||||++||++||++++
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g------- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC-------
Confidence 4788899841 00123579999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccCCCCCC
Q 027863 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQ 210 (217)
Q Consensus 157 ~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~gG~~~~ 210 (217)
..||++|+.. .++ .|+++.+++++|+++||++|++||+|.++|.
T Consensus 122 -~~w~~aG~~~------~~~---~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~ 165 (255)
T PLN00170 122 -IPWFEAGADP------GAI---APFSFGSLLGTQLLLMGWVESKRWVDFFNPD 165 (255)
T ss_pred -CChhhCCccc------ccc---CccchHHHHHHHHHHhhhhhheeeccccCCc
Confidence 3599999852 122 1344567788999999999999998866553
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.96 E-value=3.5e-29 Score=222.10 Aligned_cols=113 Identities=31% Similarity=0.632 Sum_probs=95.9
Q ss_pred hhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 75 w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
.++++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||+++..|...
T Consensus 40 ~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~ 114 (252)
T PLN00147 40 VVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN 114 (252)
T ss_pred cCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC
Confidence 446799999995 789999999999999999999999999999999999999999999999999999999888764
Q ss_pred CCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 155 ~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g 205 (217)
.+.||++|...+ .+..+ .+++++|+++||++|.+|+.+
T Consensus 115 --~p~w~~ag~~~~------~~~~~-----~~~~~~q~~~mG~~E~~R~~~ 152 (252)
T PLN00147 115 --LPVWYEAGAVKF------EFAST-----RTLFVVQLLLMGFAETKRYMD 152 (252)
T ss_pred --Ccchhhcccchh------ccccc-----hHHHHHHHHHHHHHHHHhhcc
Confidence 357999986533 12222 345677999999999999754
No 10
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.95 E-value=7.3e-29 Score=219.12 Aligned_cols=114 Identities=32% Similarity=0.688 Sum_probs=98.2
Q ss_pred CCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCCC
Q 027863 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (217)
Q Consensus 78 ~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p~ 157 (217)
.+|..|+|+ ..+|+||||++||||||||+||++++++++++|++||+||||||||++|+++||+++.
T Consensus 42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------- 108 (243)
T PLN00099 42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------- 108 (243)
T ss_pred cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence 478899996 7899999999999999999999999999999999999999999999999999999762
Q ss_pred ccccccccc-ccCCCccCCCCCCchh-hHHHHHHHHHHHHhhhhheecc
Q 027863 158 AVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRIT 204 (217)
Q Consensus 158 ~~Wf~AG~~-~~~~~~l~Ylg~~~p~-~~~~li~~evlLmG~~E~~R~~ 204 (217)
..|+++++. .+.++..+|++++.++ .+..++++|+++||++|.+|+.
T Consensus 109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~ 157 (243)
T PLN00099 109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSM 157 (243)
T ss_pred CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 259988863 3455667899988776 3455668899999999998854
No 11
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.95 E-value=1.1e-28 Score=218.13 Aligned_cols=103 Identities=31% Similarity=0.598 Sum_probs=89.1
Q ss_pred CCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCCC
Q 027863 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (217)
Q Consensus 78 ~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p~ 157 (217)
.+|++|+|+ .++|+||||++||||||||+||++++++++++|++||+||||||||++|++++|+++ .
T Consensus 33 ~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~--------~ 99 (246)
T PLN00100 33 RARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG--------L 99 (246)
T ss_pred CCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc--------c
Confidence 489999996 789999999999999999999999999999999999999999999999999999975 2
Q ss_pred cccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863 158 AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 158 ~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g 205 (217)
+.||++|... |..+ ...++++|+++||++|.+|+++
T Consensus 100 P~w~~ag~~~-------~~~~-----~~~l~~iqill~g~~E~~r~~~ 135 (246)
T PLN00100 100 PKFWEAGAEK-------YGLD-----LQTLVLIQVVVMAVLEAARYRG 135 (246)
T ss_pred cchhhcchhh-------hccc-----hhHHHHHHHHHHHHHhhhcccc
Confidence 3599988752 3222 2345678999999999999875
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.83 E-value=7.1e-21 Score=155.46 Aligned_cols=97 Identities=37% Similarity=0.660 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC--CCCcccccccccccCCC
Q 027863 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDGN 171 (217)
Q Consensus 94 ~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~--~p~~~Wf~AG~~~~~~~ 171 (217)
+|+||||+++||+||||+||++++ ++.++|+.||+|||+||||++|++++|++++.+... .....|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 599999999999999999999877 999999999999999999999999999998754321 11234776541
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhhhhheeccCC
Q 027863 172 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 206 (217)
Q Consensus 172 ~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~gG 206 (217)
++ .+ ...++..++++|.+|.+|..+.
T Consensus 74 -~~-----~~---~~~~~~~l~~ig~~e~~~~~~~ 99 (156)
T PF00504_consen 74 -IP-----VP---AAGWAQILLFIGALEPWRQQGV 99 (156)
T ss_dssp -SS-----SH---SHHHHHHHHHHHHHHHHHHHHT
T ss_pred -hh-----hh---hHHHHHHHHHHhHhhhhhcccc
Confidence 11 11 1123456777888888876653
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.70 E-value=1.9e-17 Score=143.76 Aligned_cols=57 Identities=33% Similarity=0.546 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCC
Q 027863 95 PEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (217)
Q Consensus 95 P~yL~G~~PGD~GfDPlGL~~-dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~ 152 (217)
|.-|+|. .||++|||+||++ ++|+++++|++||||||+||||++|+++||.++..|.
T Consensus 47 ~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 47 EFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred CccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 4468898 9999999999985 5778999999999999999999999999999887664
No 14
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.62 E-value=2.9e-16 Score=139.82 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 95 P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
+..+++.+|||++|||+||.+|+++++++|++|||||||||+|++|+++|+++++.|++.
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~ 231 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPID 231 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHH
Confidence 345667799999999999999999999999999999999999999999999999988753
No 15
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.60 E-value=7.3e-16 Score=133.92 Aligned_cols=54 Identities=30% Similarity=0.496 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCCCC-CCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCC
Q 027863 100 GEVPGDYGYDPFGLS-KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (217)
Q Consensus 100 G~~PGD~GfDPlGL~-~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~ 153 (217)
+++||||||||+||. +|+++++++|++||+||||||+|++|+++|+++++.|+.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 578999999999994 689999999999999999999999999999999988764
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.57 E-value=1.3e-15 Score=136.39 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=51.9
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 100 G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
..+|||++|||+||++|+|+++++|++||+||||||+|++||++|+++++.|++.
T Consensus 187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~ 241 (262)
T PLN00048 187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQ 241 (262)
T ss_pred cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHH
Confidence 3699999999999999999999999999999999999999999999999988753
No 17
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.53 E-value=5.3e-15 Score=132.45 Aligned_cols=55 Identities=29% Similarity=0.546 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
|..+|||+ |||+||.+|+++++++|.+||+||||||++++||++|+++|+.|++.
T Consensus 183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPle 237 (262)
T PLN00025 183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 237 (262)
T ss_pred cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHH
Confidence 45799999 99999999999999999999999999999999999999999998763
No 18
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.50 E-value=1.4e-14 Score=131.17 Aligned_cols=56 Identities=32% Similarity=0.458 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
+..+|||++|||+||.+|+++++++|++||+||||||+|++||++|+++++.|++.
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~ 266 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 266 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHH
Confidence 34589999999999999999999999999999999999999999999999988753
No 19
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.49 E-value=1.7e-14 Score=128.02 Aligned_cols=53 Identities=34% Similarity=0.703 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhh-hhccCCCC
Q 027863 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGAN 153 (217)
Q Consensus 100 G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e-~l~~~G~~ 153 (217)
+.+||| +|||+|+.+|+++++++|++|||||||||+|++|+++|+ .+++.|++
T Consensus 164 ~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl 217 (243)
T PLN00099 164 KKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 217 (243)
T ss_pred CcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence 468999 899999999999999999999999999999999999999 46777775
No 20
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.49 E-value=1.9e-14 Score=129.13 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCCCCC-CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 100 GEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 100 G~~PGD~GfDPlGL~~-dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
..+|||++|||+||.+ |+++++++|.+|||||||||+|++|+++|+++|+.|++.
T Consensus 191 ~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~ 246 (267)
T PLN00098 191 VGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIE 246 (267)
T ss_pred CCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHH
Confidence 3689999999999974 899999999999999999999999999999999988763
No 21
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.44 E-value=7.2e-14 Score=114.20 Aligned_cols=50 Identities=46% Similarity=0.733 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhh
Q 027863 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (217)
Q Consensus 97 yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~ 146 (217)
+.++.+|||++|||+|+.+|+++..++|.+||+|||+||+|++|+++||.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999999999999973
No 22
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.43 E-value=8.4e-14 Score=127.75 Aligned_cols=53 Identities=36% Similarity=0.541 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 102 ~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
+||+++|||+||.+|+++++++|++||+||||||+|++|+++|+++|+.|++.
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPle 304 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQ 304 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHH
Confidence 45555699999999999999999999999999999999999999999988753
No 23
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.41 E-value=1.3e-13 Score=122.55 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=45.3
Q ss_pred CCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 108 fDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
|||+||.+|+++++++|.+|||||||||+|++|+++|+++|++|++.
T Consensus 182 FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~ 228 (244)
T PLN00097 182 FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVD 228 (244)
T ss_pred CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHH
Confidence 99999999999999999999999999999999999999999999863
No 24
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.34 E-value=5.1e-13 Score=118.82 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
..||||+|||+||.+ +++|++|||||||||+|++|+++|+++|+.|++.
T Consensus 143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPle 191 (246)
T PLN00100 143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLE 191 (246)
T ss_pred CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHH
Confidence 468999999999963 5789999999999999999999999999999763
No 25
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.31 E-value=1.6e-12 Score=112.66 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=40.8
Q ss_pred CCCCCCCCCC--CCCCCC-CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccC
Q 027863 100 GEVPGDYGYD--PFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (217)
Q Consensus 100 G~~PGD~GfD--PlGL~~-dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~ 150 (217)
+++||||+++ ++|+.. |+|+.+++|++|||||||||+|++|+++||.+++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5778855333 333332 78999999999999999999999999999999764
No 26
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.31 E-value=2.4e-12 Score=111.47 Aligned_cols=44 Identities=32% Similarity=0.677 Sum_probs=39.2
Q ss_pred CCCCCCC--CCchhHHHHHHHHHhhchhhHhhhhhhhhhhh-hccCC
Q 027863 108 YDPFGLS--KKPDDFSKYQAYELIHARWAMLGAAGFIIPEA-FNKFG 151 (217)
Q Consensus 108 fDPlGL~--~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~-l~~~G 151 (217)
|||+||. +|+++++++|++||+||||||||++|+++||. ++..|
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg 93 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPG 93 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCC
Confidence 9999997 47899999999999999999999999999997 44334
No 27
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.29 E-value=1.5e-12 Score=116.07 Aligned_cols=48 Identities=25% Similarity=0.472 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 102 ~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
|||+. ||||||+++ ++++++|||||||||+|++|+++|+++|+.|++.
T Consensus 184 YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~ 231 (250)
T PLN00101 184 YPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFE 231 (250)
T ss_pred CCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHH
Confidence 66664 999999865 3689999999999999999999999999999863
No 28
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.28 E-value=2.2e-12 Score=115.31 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCCC---------CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 101 EVPGDYGYDPFGLSK---------KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 101 ~~PGD~GfDPlGL~~---------dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
.+||+..||||||.+ |+++++++|.+|||||||||+|++|+++|. .++.|++.
T Consensus 190 ~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~ 251 (255)
T PLN00170 190 GYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLG 251 (255)
T ss_pred ccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchh
Confidence 378887899999985 789999999999999999999999999999 57777753
No 29
>PHA02337 putative high light inducible protein
Probab=98.00 E-value=4.2e-06 Score=54.51 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=26.9
Q ss_pred HHHHHhhchhhHhhhhhhhhhhhhccCCC
Q 027863 124 QAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (217)
Q Consensus 124 r~~EL~hGRlAMLa~~G~l~~e~l~~~G~ 152 (217)
..+|..|||+||+|++-.+..|+++++++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 36799999999999999999999999886
No 30
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.40 E-value=4.9e-05 Score=67.82 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHHHHHhhchhhHhhhhhhhhhhhhccCCCC
Q 027863 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (217)
Q Consensus 123 ~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~ 153 (217)
+..+|+.|||+||+|++-.++.|++++.|+.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 3578999999999999999999999998874
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=96.33 E-value=0.0018 Score=56.04 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhchhhHhhhhhhhhhhhhc-cCCCC
Q 027863 120 FSKYQAYELIHARWAMLGAAGFIIPEAFN-KFGAN 153 (217)
Q Consensus 120 ~~~~r~~EL~hGRlAMLa~~G~l~~e~l~-~~G~~ 153 (217)
....+..|+-|||+||+|++-.++.|++| ++|+.
T Consensus 132 vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 132 VREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 33455679999999999999999999999 88886
Done!