Query 027863
Match_columns 217
No_of_seqs 257 out of 973
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 1.9E-36 6.5E-41 264.1 9.6 130 72-205 13-145 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 4.2E-35 1.4E-39 257.4 2.4 117 75-205 6-165 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 9.2E-34 3.1E-38 252.0 2.4 116 71-205 55-170 (269)
4 2wsc_4 Chlorophyll A-B binding 100.0 7.2E-32 2.5E-36 237.7 0.5 115 72-205 44-159 (251)
5 2wsc_3 LHCA3, type II chloroph 100.0 3.7E-31 1.3E-35 236.0 1.7 118 76-205 52-176 (276)
6 2wsc_1 AT3G54890, LHCA1; photo 99.9 6.5E-28 2.2E-32 211.6 7.1 114 79-205 44-159 (241)
7 3pl9_A Chlorophyll A-B binding 99.5 1E-14 3.5E-19 128.2 3.6 52 101-153 172-223 (243)
8 2wsc_3 LHCA3, type II chloroph 99.5 6.6E-15 2.3E-19 131.4 1.9 56 99-154 200-255 (276)
9 2bhw_A Chlorophyll A-B binding 99.5 2.8E-14 9.5E-19 124.3 4.9 54 99-153 153-206 (232)
10 2wsc_2 LHCA2, type II chloroph 99.4 1.6E-14 5.4E-19 128.5 1.3 56 99-154 192-248 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 1.6E-13 5.6E-18 120.3 1.6 55 99-154 164-219 (241)
12 2wsc_4 Chlorophyll A-B binding 99.2 6.1E-12 2.1E-16 110.8 2.7 48 101-154 183-230 (251)
13 2wsc_H Photosystem I reaction 35.1 8 0.00027 31.2 0.0 26 1-26 1-30 (144)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=1.9e-36 Score=264.06 Aligned_cols=130 Identities=44% Similarity=0.866 Sum_probs=112.7
Q ss_pred hhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCC
Q 027863 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (217)
Q Consensus 72 ~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G 151 (217)
.++|||+||++||| +++ .++|+||||++||||||||+||++|+|+++|||++|||||||||||++|++++|++++.|
T Consensus 13 ~~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 13 GSPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp TCTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 45899999999994 344 589999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCcccccccccccCCCccCCCCCCchh---hHHHHHHHHHHHHhhhhheeccC
Q 027863 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~---~~~~li~~evlLmG~~E~~R~~g 205 (217)
+.. ++..||++|...+++..++|+++|... .+..++++|+++||++|.+|+.+
T Consensus 90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~ 145 (232)
T 2bhw_A 90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 145 (232)
T ss_dssp CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 644 367899999887877778899887532 24455678999999999998865
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=4.2e-35 Score=257.37 Aligned_cols=117 Identities=33% Similarity=0.738 Sum_probs=68.9
Q ss_pred hhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCch------------------------------------
Q 027863 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118 (217)
Q Consensus 75 w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe------------------------------------ 118 (217)
+++++|++|||+ .++|+||||++||||||||+||+++||
T Consensus 6 ~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T 3pl9_A 6 GFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSL 80 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccc
Confidence 445799999996 899999999999999999999999987
Q ss_pred -------hHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHH
Q 027863 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191 (217)
Q Consensus 119 -------~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~e 191 (217)
.++|||++||+||||||||++||+++|++++ ..||++|++.+.+ .++|++++.++++..++++|
T Consensus 81 ~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~q 151 (243)
T 3pl9_A 81 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWIE 151 (243)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHS-CEEETTEEECCCHHHHHHHH
T ss_pred ccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------ccccccccccccc-ccccccCccchhhHHHHHHH
Confidence 3789999999999999999999999999862 4699999987654 37899998888877888899
Q ss_pred HHHHhhhhheeccC
Q 027863 192 IVLVGGAEYYRITN 205 (217)
Q Consensus 192 vlLmG~~E~~R~~g 205 (217)
+++||++|.+|+++
T Consensus 152 v~lmG~~E~~R~~~ 165 (243)
T 3pl9_A 152 VLVIGYIEFQRNAE 165 (243)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999999976
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.97 E-value=9.2e-34 Score=252.01 Aligned_cols=116 Identities=39% Similarity=0.773 Sum_probs=65.3
Q ss_pred hhhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccC
Q 027863 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (217)
Q Consensus 71 ~~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~ 150 (217)
.+..+||++|++|||+ .++|+||+|++||||||||+||++|+|++++||++||+||||||||++|++++|++++.
T Consensus 55 ~~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~ 129 (269)
T 2wsc_2 55 TVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKL 129 (269)
T ss_dssp --------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCT
T ss_pred eeecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccC
Confidence 3456899999999995 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 151 G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g 205 (217)
|+++ .+.||++|.. +||.++. .++++|+++||++|.+|+++
T Consensus 130 G~~~--~p~w~~aG~~-------~~~~~~~-----~l~~~qi~liG~~E~~r~~~ 170 (269)
T 2wsc_2 130 GILN--TPSWYTAGEQ-------EYFTDTT-----TLFIVELVFIGWAEGRRWAD 170 (269)
T ss_dssp TSSS--CCCCCSTTSS-------SSCCCTT-----SHHHHHTTHHHHHHHHHHTT
T ss_pred Cccc--Cccccccchh-------hhhcchH-----HHHHHHHHHHHHHHHHHHhc
Confidence 8875 3569998753 5776642 23567899999999999754
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.96 E-value=7.2e-32 Score=237.74 Aligned_cols=115 Identities=34% Similarity=0.698 Sum_probs=67.3
Q ss_pred hhhhhCC-CCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccC
Q 027863 72 LAKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (217)
Q Consensus 72 ~~~w~g~-~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~ 150 (217)
+..+||+ ||++|+|+ .++|.||||++||||||||+||++|+|+++++|++||+||||||||++|++++|++++.
T Consensus 44 ~~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~ 118 (251)
T 2wsc_4 44 SASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSI 118 (251)
T ss_dssp ------------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCS
T ss_pred cccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCC
Confidence 3468999 89999985 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 151 G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g 205 (217)
|++. .+.||++|.. +|++++.. ++++|+++||++|.+|+++
T Consensus 119 g~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~ 159 (251)
T 2wsc_4 119 GIIN--VPKWYAAGKE-------EYFASSST-----LFVIEFILSHYVEIRRWQD 159 (251)
T ss_dssp CSSC--CCCCSCCCSS-------SCSSCSSC-----TTTTHHHHHHTTTHHHHHH
T ss_pred CccC--CccccccchH-------hhhccchH-----HHHHHHHHHHHHHHHHhhc
Confidence 9875 3579998763 57776532 2356888999999999764
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.96 E-value=3.7e-31 Score=235.98 Aligned_cols=118 Identities=36% Similarity=0.649 Sum_probs=67.3
Q ss_pred hCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhH------HHHHHHHHhhchhhHhhhhhhhhhhhhcc
Q 027863 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFNK 149 (217)
Q Consensus 76 ~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~------~~~r~~EL~hGRlAMLa~~G~l~~e~l~~ 149 (217)
||+||++|||+ .++|+||||++||||||||+|| .|++++ +++|++||+||||||||++|++++|++++
T Consensus 52 ~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~ 125 (276)
T 2wsc_3 52 QGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125 (276)
T ss_dssp ---------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS
T ss_pred cCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc
Confidence 89999999995 7899999999999999999999 688999 99999999999999999999999999999
Q ss_pred CCCCCCC-CcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863 150 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 150 ~G~~~~p-~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g 205 (217)
.|++... ...||+++.+.. .+.++||+++. .++++|+++||++|.+|+++
T Consensus 126 ~g~~~~~~p~~w~~~g~ip~-aG~~~~~~~~~-----~l~~~qi~liG~~E~~r~~~ 176 (276)
T 2wsc_3 126 AGLIPQETALPWFRTGFIPP-AGTYNYWADSY-----TLFVFEMALMGFAEHRRFQD 176 (276)
T ss_dssp CCCCCCSSCCSSSSCCCC------CCCSCCCC-----STTHHHHHHTHHHHTTTTTG
T ss_pred cccccccCcchhhhhhcccc-hhHHHHhccch-----HHHHHHHHHHHHHHHhhhcc
Confidence 9987422 235999887543 34478998763 24567899999999999764
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.94 E-value=6.5e-28 Score=211.59 Aligned_cols=114 Identities=34% Similarity=0.712 Sum_probs=78.6
Q ss_pred CCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCCCc
Q 027863 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158 (217)
Q Consensus 79 ~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p~~ 158 (217)
.|.+|+|+ ...|+||+|++||||||||+||++|+|+++++|++||+||||||||++|+++||+++. .
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~ 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence 45679995 7899999999999999999999999999999999999999999999999999999753 2
Q ss_pred cccccccc-ccCCCccCCCCCCchh-hHHHHHHHHHHHHhhhhheeccC
Q 027863 159 VWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITN 205 (217)
Q Consensus 159 ~Wf~AG~~-~~~~~~l~Ylg~~~p~-~~~~li~~evlLmG~~E~~R~~g 205 (217)
.|++++.. .+.++..+|++++.++ .+..++++|+++||++|.+|+.+
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~ 159 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME 159 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSC
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47776652 3456667899887765 35566688999999999998743
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.48 E-value=1e-14 Score=128.15 Aligned_cols=52 Identities=37% Similarity=0.589 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCC
Q 027863 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (217)
Q Consensus 101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~ 153 (217)
.+|||+ |||+||.+|+++++++|++||+||||||+|++|+++|+++|+.|++
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 589999 9999999999999999999999999999999999999999998875
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.47 E-value=6.6e-15 Score=131.36 Aligned_cols=56 Identities=21% Similarity=0.414 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
|..+|||++|||+||.+++++++++|++||+||||||||++|+++||++++.|++.
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~ 255 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ 255 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence 44689999999999999888899999999999999999999999999999998764
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.46 E-value=2.8e-14 Score=124.34 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCC
Q 027863 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (217)
Q Consensus 99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~ 153 (217)
+..+|||+ |||+||.+|+++++++|.+||+||||||+|++|+++||++++.|++
T Consensus 153 d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~ 206 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 206 (232)
T ss_dssp SSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred cccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence 45689998 9999999999999999999999999999999999999999998875
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.43 E-value=1.6e-14 Score=128.52 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCCCCC-CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 99 TGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 99 ~G~~PGD~GfDPlGL~~-dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
+..+|||++|||+||.+ |+|+++++|++||+||||||||++|+++||++++.|++.
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~ 248 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSC
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHH
Confidence 34689999999999984 788899999999999999999999999999999999864
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.34 E-value=1.6e-13 Score=120.31 Aligned_cols=55 Identities=29% Similarity=0.583 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhh-hhccCCCCC
Q 027863 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGANC 154 (217)
Q Consensus 99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e-~l~~~G~~~ 154 (217)
++.+||| +|||+||.+|+++++++|.+||+|||+||+|++|+++|+ ++++.|++.
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~ 219 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHH
Confidence 4578999 599999999999999999999999999999999999999 578888763
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.17 E-value=6.1e-12 Score=110.83 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (217)
Q Consensus 101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~ 154 (217)
.+|||+ |||+|+.+ ++++|.+||||||| |+|++|+++|+++|+.|++.
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~ 230 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFD 230 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCC
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHH
Confidence 479998 99999975 66789999999999 99999999999999998864
No 13
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=35.08 E-value=8 Score=31.20 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=0.0
Q ss_pred Ccccccc--cCccc--ccchhhhcCCcccc
Q 027863 1 MASLAAS--STPAA--SIGAKEMLGNPLNV 26 (217)
Q Consensus 1 ~a~~~~~--~~~~~--~~~~~~~~g~~~~~ 26 (217)
||||+.. .+.+. -|+.|++-|+.|..
T Consensus 1 maslat~~a~~p~~~kgl~gSs~~G~Kl~v 30 (144)
T 2wsc_H 1 MASLATLAAVQPTTLKGLAGSSIAGTKLHI 30 (144)
T ss_dssp ------------------------------
T ss_pred CcchhhhhhcCccccccccccccccceEee
Confidence 7776652 23333 37788888888853
Done!