Query 027865
Match_columns 217
No_of_seqs 212 out of 575
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.4 0.0088 3E-07 45.0 6.9 57 126-207 5-61 (89)
2 1wmh_B Partitioning defective- 96.3 0.011 3.6E-07 44.5 6.7 58 126-207 5-62 (86)
3 2kkc_A Sequestosome-1; P62, PB 95.7 0.021 7.2E-07 43.9 6.0 60 126-208 4-78 (102)
4 2ktr_A Sequestosome-1; autopha 94.8 0.063 2.2E-06 42.3 6.2 59 126-207 19-92 (117)
5 1q1o_A Cell division control p 88.5 1.6 5.4E-05 33.3 7.0 64 127-209 5-74 (98)
6 1oey_J P40-PHOX, neutrophil cy 81.5 2.4 8.2E-05 32.9 5.1 39 144-208 28-66 (107)
7 2bkf_A Zinc-finger protein NBR 79.5 5.2 0.00018 29.9 6.3 54 128-207 7-60 (87)
8 1pqs_A Cell division control p 76.9 2.2 7.5E-05 30.9 3.5 47 144-209 7-53 (77)
9 1wj6_A KIAA0049 protein, RSGI 76.9 5.4 0.00018 30.6 5.8 55 127-207 14-68 (101)
10 1e8p_A Endoglucanase, dockerin 58.6 2.7 9.1E-05 28.1 0.6 13 194-206 20-32 (46)
11 1oey_A P67-PHOX, neutrophil cy 50.2 28 0.00097 25.4 5.0 58 128-212 6-64 (83)
12 3o27_A Putative uncharacterize 39.0 18 0.00061 25.9 2.3 22 186-207 38-59 (68)
13 2npt_A Dual specificity mitoge 33.9 79 0.0027 24.1 5.3 56 128-208 15-71 (106)
14 2j4m_A Endoglucanase 45A; dock 31.2 11 0.00036 28.9 0.1 13 194-206 21-33 (100)
15 2i1s_A Hypothetical protein; m 27.8 50 0.0017 26.7 3.6 37 127-163 8-46 (188)
16 3brc_A Conserved protein of un 26.0 17 0.00058 29.7 0.5 9 9-17 101-109 (156)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.44 E-value=0.0088 Score=45.00 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=44.3
Q ss_pred CcceEEEEEcCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCCCCeeEEEEcCCCCeE
Q 027865 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM 205 (217)
Q Consensus 126 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkeGDwM 205 (217)
+.+=|||+-.|.-+ .+.+...-+|++|...|.++|.. . .+..+++.|.|.|||+.
T Consensus 5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~-~----------------------~~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSF-D----------------------NEQLFTMKWIDEEGDPC 59 (89)
T ss_dssp SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTC-C----------------------SSCCEEEEECCSSSCCE
T ss_pred CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCC-C----------------------CCCeEEEEEECCCCCcc
Confidence 45788999999844 44445567999999999999985 1 13478999999999986
Q ss_pred ec
Q 027865 206 LV 207 (217)
Q Consensus 206 LV 207 (217)
-+
T Consensus 60 ti 61 (89)
T 1vd2_A 60 TV 61 (89)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.30 E-value=0.011 Score=44.50 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=45.3
Q ss_pred CcceEEEEEcCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCCCCeeEEEEcCCCCeE
Q 027865 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM 205 (217)
Q Consensus 126 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkeGDwM 205 (217)
+..-||..-|..--=-.||-....+|++|..-|+++|.+ ....|++.|.|.|||++
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLl 60 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLL 60 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEE
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEe
Confidence 456788888887433355556778999999999999984 13379999999999997
Q ss_pred ec
Q 027865 206 LV 207 (217)
Q Consensus 206 LV 207 (217)
-+
T Consensus 61 pI 62 (86)
T 1wmh_B 61 PL 62 (86)
T ss_dssp EC
T ss_pred ee
Confidence 54
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.70 E-value=0.021 Score=43.91 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=44.1
Q ss_pred CcceEEEEEcCc----cccceeecCC-----------ccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCC
Q 027865 126 NVAFVKVSMDGA----PYLRKVDLKL-----------YKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG 190 (217)
Q Consensus 126 ~~~~VKV~MdG~----pigRKVDL~~-----------~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~ 190 (217)
.++-||++..|. .==|++-|.. ..+|++|...++++|... .+
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-----------------------~~ 60 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-----------------------RP 60 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc-----------------------CC
Confidence 357789998762 2446665542 248999999999999741 24
Q ss_pred CCeeEEEEcCCCCeEecC
Q 027865 191 SDYVPTYEDKDGDWMLVG 208 (217)
Q Consensus 191 seyvltYeDkeGDwMLVG 208 (217)
..|.|.|.|.|||+.-+-
T Consensus 61 ~~f~l~Y~DedGDlItiS 78 (102)
T 2kkc_A 61 GGFQAHYRAERGDLVAFS 78 (102)
T ss_dssp SCEEEEEECTTCCEEEEC
T ss_pred CcEEEEEECCCCCEEEec
Confidence 479999999999987543
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.76 E-value=0.063 Score=42.29 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=43.3
Q ss_pred CcceEEEEEcCc----cccceeecC-----------CccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCC
Q 027865 126 NVAFVKVSMDGA----PYLRKVDLK-----------LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG 190 (217)
Q Consensus 126 ~~~~VKV~MdG~----pigRKVDL~-----------~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~ 190 (217)
..+-||++..|. .==|++-|. .-.+|++|...++++|.. +.+
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-----------------------L~~ 75 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-----------------------LRP 75 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT-----------------------SCS
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc-----------------------cCC
Confidence 467899999752 233555554 135999999999999974 124
Q ss_pred CCeeEEEEcCCCCeEec
Q 027865 191 SDYVPTYEDKDGDWMLV 207 (217)
Q Consensus 191 seyvltYeDkeGDwMLV 207 (217)
..|.|.|.|.|||+.-+
T Consensus 76 ~~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 76 GGFQAHYRAERGDLVAF 92 (117)
T ss_dssp SCEEEEEECTTCCEEEE
T ss_pred CcEEEEEECCCCCEEEe
Confidence 47999999999998754
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=88.46 E-value=1.6 Score=33.30 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=45.9
Q ss_pred cceEEEEEcCc------cccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCCCCeeEEEEcC
Q 027865 127 VAFVKVSMDGA------PYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDK 200 (217)
Q Consensus 127 ~~~VKV~MdG~------pigRKVDL~~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYeDk 200 (217)
+.-|||+-+.. .=.|.|=+..--+|++|...+.+-|..++.. + . .....|-|.|.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-----------------~-i-~~~~klkYkDE 65 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN-----------------N-I-SPITKIKYQDE 65 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS-----------------C-C-CCCCCEEEECS
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc-----------------c-c-cceeEEEEEcC
Confidence 46788887742 1236666778889999999999999863110 0 0 12467999999
Q ss_pred CCCeEecCC
Q 027865 201 DGDWMLVGD 209 (217)
Q Consensus 201 eGDwMLVGD 209 (217)
|||+...++
T Consensus 66 dGD~Vtl~s 74 (98)
T 1q1o_A 66 DGDFVVLGS 74 (98)
T ss_dssp SSCEEEECS
T ss_pred CCCEEEEcC
Confidence 999988776
No 6
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=81.46 E-value=2.4 Score=32.85 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=31.9
Q ss_pred ecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCCCCeeEEEEcCCCCeEecC
Q 027865 144 DLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG 208 (217)
Q Consensus 144 DL~~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkeGDwMLVG 208 (217)
||+.--.|.+|..-..+-|... +-+|-|.|.|||+.-+=
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIril 66 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRLL 66 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEECC
T ss_pred ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEEc
Confidence 5777789999999999999741 44789999999997653
No 7
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=79.51 E-value=5.2 Score=29.88 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=40.3
Q ss_pred ceEEEEEcCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCCCCeeEEEEcCCCCeEec
Q 027865 128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV 207 (217)
Q Consensus 128 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkeGDwMLV 207 (217)
.-+||.--|...=--|.-..--++++|-..+..+|+. + .++|.|-|.|||-.-|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L------------------------~--~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------N--TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC------------------------S--SEEEEEECTTSCEEEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC------------------------C--ceEEEEEcCCCCEEEE
Confidence 4578899998544346444477899998888888874 1 5789999999997643
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=76.88 E-value=2.2 Score=30.95 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=33.5
Q ss_pred ecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCCCCeeEEEEcCCCCeEecCC
Q 027865 144 DLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD 209 (217)
Q Consensus 144 DL~~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkeGDwMLVGD 209 (217)
=...--+|++|...+.+-|..+ .+.+ ......|-|.|.|||+...++
T Consensus 7 ~V~~~i~f~~L~~kI~~kl~~~-----~~~~--------------~~~~~~lkYkDEdGD~Vti~s 53 (77)
T 1pqs_A 7 LVEKVWNFDDLIMAINSKISNT-----HNNN--------------ISPITKIKYQDEDGDFVVLGS 53 (77)
T ss_dssp ECTTCCCSHHHHHHHHHHTTTT-----TSSC--------------SCSTTCCEEEETTTEEEECCS
T ss_pred EeCCCCCHHHHHHHHHHHHccc-----cccc--------------ccceeEEEEEcCCCCEEEEcC
Confidence 3445568999999999999852 1111 023567999999999987765
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=76.88 E-value=5.4 Score=30.62 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=41.2
Q ss_pred cceEEEEEcCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCCCCeeEEEEcCCCCeEe
Q 027865 127 VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWML 206 (217)
Q Consensus 127 ~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkeGDwML 206 (217)
..-+||.--|...=--|.-..--.+++|-..+..+|+. + .++|.|-|.|||-.-
T Consensus 14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L------------------------~--~~~IkY~DEenD~V~ 67 (101)
T 1wj6_A 14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------N--TIQIKYLDEENEEVS 67 (101)
T ss_dssp CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC------------------------S--SBCCEEECTTSCEEC
T ss_pred cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC------------------------C--ceEEEEecCCCCEEE
Confidence 34679999998554456444567899999888888874 1 568999999999754
Q ss_pred c
Q 027865 207 V 207 (217)
Q Consensus 207 V 207 (217)
|
T Consensus 68 i 68 (101)
T 1wj6_A 68 I 68 (101)
T ss_dssp C
T ss_pred E
Confidence 3
No 10
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=58.55 E-value=2.7 Score=28.10 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.2
Q ss_pred eEEEEcCCCCeEe
Q 027865 194 VPTYEDKDGDWML 206 (217)
Q Consensus 194 vltYeDkeGDwML 206 (217)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5889999999954
No 11
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=50.15 E-value=28 Score=25.43 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=42.8
Q ss_pred ceEEEEEcCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCCCCeeEEEEc-CCCCeEe
Q 027865 128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYED-KDGDWML 206 (217)
Q Consensus 128 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYeD-keGDwML 206 (217)
.=|||+-. +.-.|....=-+|.+|...|.+-+... + .+=+|-|.| .+|.|++
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~--~----------------------~~~~LsYk~~~s~~~vi 58 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR--L----------------------EHTKLSYRPRDSNELVP 58 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC--G----------------------GGCCEEECCTTCSSCEE
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC--c----------------------ceeEEEeeCCCCCCeec
Confidence 45677766 777888888889999999999988751 1 122577888 5777788
Q ss_pred cCCcCC
Q 027865 207 VGDVPW 212 (217)
Q Consensus 207 VGDVPW 212 (217)
.+|.=|
T Consensus 59 ~~d~dl 64 (83)
T 1oey_A 59 LSEDSM 64 (83)
T ss_dssp CCTTTH
T ss_pred cChHHH
Confidence 877543
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=38.98 E-value=18 Score=25.90 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=17.6
Q ss_pred cccCCCCeeEEEEcCCCCeEec
Q 027865 186 DLLNGSDYVPTYEDKDGDWMLV 207 (217)
Q Consensus 186 d~~~~seyvltYeDkeGDwMLV 207 (217)
++..+-+|.+++||++|+.+|+
T Consensus 38 gIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 38 DIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCTTCCEEEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEEecCCCeEEEE
Confidence 3345669999999999998875
No 13
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=33.92 E-value=79 Score=24.13 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=38.1
Q ss_pred ceEEEEEc-CccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhcccCCCCeeEEEEcCCCCeEe
Q 027865 128 AFVKVSMD-GAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWML 206 (217)
Q Consensus 128 ~~VKV~Md-G~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYeDkeGDwML 206 (217)
.-+.+... |-.+--.||-..+=+|.+|+.++.+..-.-| --.+-|||.+||+.-
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT-------------------------~TAFeYEDE~gDRIT 69 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT-------------------------TTAFEYEDEDGDRIT 69 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC-------------------------CSEEEEECTTSCEEE
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce-------------------------eeeeeeccccCCeeE
Confidence 44555555 5557777777777789999999887665321 124779999999987
Q ss_pred cC
Q 027865 207 VG 208 (217)
Q Consensus 207 VG 208 (217)
|-
T Consensus 70 VR 71 (106)
T 2npt_A 70 VR 71 (106)
T ss_dssp EC
T ss_pred Ec
Confidence 73
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=31.18 E-value=11 Score=28.92 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.0
Q ss_pred eEEEEcCCCCeEe
Q 027865 194 VPTYEDKDGDWML 206 (217)
Q Consensus 194 vltYeDkeGDwML 206 (217)
.++|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 5889999999953
No 15
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=27.82 E-value=50 Score=26.67 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=34.1
Q ss_pred cceEEEEEcCc--cccceeecCCccCHHHHHHHHHHhhc
Q 027865 127 VAFVKVSMDGA--PYLRKVDLKLYKSYQELSDALGKMFS 163 (217)
Q Consensus 127 ~~~VKV~MdG~--pigRKVDL~~~~sY~~L~~aLe~MF~ 163 (217)
.--+||..+|. +|=|.|.+..--+..+|-.+|+..|+
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 45689999986 79999999999999999999999997
No 16
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.00 E-value=17 Score=29.73 Aligned_cols=9 Identities=56% Similarity=1.025 Sum_probs=7.6
Q ss_pred cccCCCCCC
Q 027865 9 LRLGLPGGN 17 (217)
Q Consensus 9 LRLGLPG~~ 17 (217)
=|||.||+.
T Consensus 101 GRLGvPGSG 109 (156)
T 3brc_A 101 GRLGVPGSG 109 (156)
T ss_dssp EECSSTTSC
T ss_pred ccccCCCCc
Confidence 399999985
Done!