Query 027867
Match_columns 217
No_of_seqs 170 out of 1651
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 4.1E-46 8.9E-51 314.7 14.3 181 14-217 1-182 (339)
2 COG1062 AdhC Zn-dependent alco 100.0 5.9E-44 1.3E-48 297.2 15.8 201 15-217 1-201 (366)
3 KOG0022 Alcohol dehydrogenase, 100.0 3.9E-43 8.4E-48 288.6 16.9 206 11-217 2-208 (375)
4 KOG0024 Sorbitol dehydrogenase 100.0 5.3E-41 1.1E-45 277.5 12.4 178 15-217 3-185 (354)
5 KOG0023 Alcohol dehydrogenase, 100.0 3E-39 6.5E-44 266.6 14.5 191 11-217 4-197 (360)
6 TIGR02818 adh_III_F_hyde S-(hy 100.0 2.8E-36 6.1E-41 262.1 19.1 200 17-217 2-201 (368)
7 cd08301 alcohol_DH_plants Plan 100.0 8.8E-36 1.9E-40 258.7 19.2 201 16-217 2-203 (369)
8 PLN02740 Alcohol dehydrogenase 100.0 1.5E-35 3.2E-40 258.6 18.1 205 13-217 7-214 (381)
9 cd08300 alcohol_DH_class_III c 100.0 2.1E-35 4.6E-40 256.4 19.0 201 16-217 2-202 (368)
10 cd08281 liver_ADH_like1 Zinc-d 100.0 5.6E-35 1.2E-39 254.0 18.2 199 17-217 1-207 (371)
11 PLN02586 probable cinnamyl alc 100.0 1.6E-34 3.5E-39 250.4 17.0 188 11-217 7-199 (360)
12 cd08277 liver_alcohol_DH_like 100.0 3.2E-34 6.9E-39 248.8 18.8 199 15-216 1-199 (365)
13 cd08239 THR_DH_like L-threonin 100.0 4.6E-34 9.9E-39 244.9 16.9 178 17-217 1-179 (339)
14 PLN02827 Alcohol dehydrogenase 100.0 1.2E-33 2.7E-38 246.4 18.7 197 16-217 12-209 (378)
15 TIGR03451 mycoS_dep_FDH mycoth 100.0 5.9E-34 1.3E-38 246.4 16.3 191 16-217 1-192 (358)
16 TIGR02819 fdhA_non_GSH formald 100.0 7.6E-34 1.6E-38 248.9 16.9 182 17-216 3-200 (393)
17 PRK09880 L-idonate 5-dehydroge 100.0 7E-33 1.5E-37 238.4 15.7 180 15-217 3-185 (343)
18 COG1063 Tdh Threonine dehydrog 100.0 5.1E-33 1.1E-37 240.2 14.7 180 17-217 1-184 (350)
19 cd08299 alcohol_DH_class_I_II_ 100.0 3.7E-32 8.1E-37 236.6 19.5 202 13-216 4-205 (373)
20 TIGR02822 adh_fam_2 zinc-bindi 100.0 1.8E-32 3.9E-37 234.9 15.9 174 20-216 2-180 (329)
21 cd08230 glucose_DH Glucose deh 100.0 4.5E-32 9.6E-37 234.4 17.0 178 17-217 1-188 (355)
22 PLN02178 cinnamyl-alcohol dehy 100.0 5.1E-32 1.1E-36 236.0 17.0 179 20-217 10-194 (375)
23 PLN02514 cinnamyl-alcohol dehy 100.0 6.9E-32 1.5E-36 233.7 17.7 184 15-217 8-196 (357)
24 cd08237 ribitol-5-phosphate_DH 100.0 6.8E-32 1.5E-36 232.4 15.0 172 15-216 1-178 (341)
25 cd05279 Zn_ADH1 Liver alcohol 100.0 4E-31 8.6E-36 229.4 18.2 199 17-217 1-199 (365)
26 COG0604 Qor NADPH:quinone redu 100.0 1.2E-31 2.6E-36 229.3 13.5 155 17-217 1-159 (326)
27 TIGR03201 dearomat_had 6-hydro 100.0 5.2E-31 1.1E-35 227.3 16.0 174 20-217 2-182 (349)
28 cd08278 benzyl_alcohol_DH Benz 100.0 2.1E-30 4.5E-35 224.9 18.1 200 15-216 1-201 (365)
29 PRK10309 galactitol-1-phosphat 100.0 1.3E-30 2.8E-35 224.4 16.1 175 17-217 1-176 (347)
30 cd08231 MDR_TM0436_like Hypoth 100.0 6E-30 1.3E-34 221.3 17.2 184 18-217 2-193 (361)
31 PRK10083 putative oxidoreducta 100.0 7.7E-30 1.7E-34 218.5 16.0 175 17-216 1-175 (339)
32 cd08283 FDH_like_1 Glutathione 100.0 1.4E-29 3E-34 221.4 17.3 193 17-216 1-199 (386)
33 cd08233 butanediol_DH_like (2R 100.0 1.6E-29 3.5E-34 217.8 16.5 176 17-217 1-188 (351)
34 cd08285 NADP_ADH NADP(H)-depen 100.0 1.8E-29 3.8E-34 217.6 16.6 179 17-216 1-181 (351)
35 cd08296 CAD_like Cinnamyl alco 100.0 2.6E-29 5.6E-34 215.2 17.0 177 17-216 1-178 (333)
36 cd05278 FDH_like Formaldehyde 100.0 4.1E-29 8.9E-34 214.3 16.1 179 17-216 1-182 (347)
37 cd08259 Zn_ADH5 Alcohol dehydr 100.0 1.2E-28 2.5E-33 209.7 17.7 177 17-216 1-178 (332)
38 PRK13771 putative alcohol dehy 100.0 1E-28 2.2E-33 211.0 17.2 177 17-216 1-178 (334)
39 cd05284 arabinose_DH_like D-ar 100.0 8.6E-29 1.9E-33 211.9 16.5 178 17-216 1-182 (340)
40 cd08279 Zn_ADH_class_III Class 100.0 2.5E-28 5.4E-33 211.6 18.4 197 17-216 1-197 (363)
41 cd08264 Zn_ADH_like2 Alcohol d 100.0 1.7E-28 3.7E-33 208.8 16.4 176 17-216 1-178 (325)
42 cd08260 Zn_ADH6 Alcohol dehydr 100.0 6.3E-28 1.4E-32 207.3 18.1 178 17-216 1-180 (345)
43 cd08256 Zn_ADH2 Alcohol dehydr 100.0 4E-28 8.7E-33 209.1 16.0 175 17-216 1-189 (350)
44 PRK09422 ethanol-active dehydr 100.0 8E-28 1.7E-32 205.8 17.0 176 17-216 1-177 (338)
45 cd08286 FDH_like_ADH2 formalde 100.0 9E-28 1.9E-32 206.3 17.0 178 17-216 1-181 (345)
46 cd08238 sorbose_phosphate_red 100.0 6.9E-28 1.5E-32 212.3 16.1 169 15-217 1-192 (410)
47 cd08240 6_hydroxyhexanoate_dh_ 100.0 7.4E-28 1.6E-32 207.3 15.8 178 17-216 1-190 (350)
48 cd08282 PFDH_like Pseudomonas 100.0 1.6E-27 3.5E-32 207.5 17.6 185 17-216 1-191 (375)
49 cd08246 crotonyl_coA_red croto 100.0 1.1E-27 2.4E-32 209.6 15.7 182 13-216 9-209 (393)
50 KOG1197 Predicted quinone oxid 100.0 2.9E-28 6.3E-33 195.8 10.8 157 11-216 3-162 (336)
51 TIGR01202 bchC 2-desacetyl-2-h 100.0 1.1E-27 2.4E-32 203.5 13.9 156 16-217 1-160 (308)
52 cd08298 CAD2 Cinnamyl alcohol 100.0 3.2E-27 6.8E-32 201.4 16.6 177 17-216 1-182 (329)
53 cd08266 Zn_ADH_like1 Alcohol d 100.0 3.1E-27 6.7E-32 200.9 16.4 178 17-216 1-182 (342)
54 TIGR01751 crot-CoA-red crotony 99.9 4.1E-27 8.9E-32 206.5 16.3 184 12-216 3-205 (398)
55 cd05283 CAD1 Cinnamyl alcohol 99.9 4.7E-27 1E-31 201.5 16.3 183 18-216 1-184 (337)
56 cd08284 FDH_like_2 Glutathione 99.9 4.8E-27 1E-31 201.4 16.3 179 17-216 1-182 (344)
57 cd08263 Zn_ADH10 Alcohol dehyd 99.9 6.6E-27 1.4E-31 202.9 16.9 198 17-216 1-202 (367)
58 PLN02702 L-idonate 5-dehydroge 99.9 8E-27 1.7E-31 202.2 17.4 179 13-216 14-196 (364)
59 cd08242 MDR_like Medium chain 99.9 6.6E-27 1.4E-31 198.8 15.9 169 17-216 1-170 (319)
60 cd08254 hydroxyacyl_CoA_DH 6-h 99.9 9.1E-27 2E-31 198.7 16.5 178 17-216 1-180 (338)
61 cd08245 CAD Cinnamyl alcohol d 99.9 8.7E-27 1.9E-31 198.8 16.3 176 18-216 1-177 (330)
62 cd08261 Zn_ADH7 Alcohol dehydr 99.9 2E-26 4.3E-31 197.3 16.4 174 17-216 1-174 (337)
63 cd08235 iditol_2_DH_like L-idi 99.9 2E-26 4.3E-31 197.5 16.4 175 17-216 1-180 (343)
64 PRK05396 tdh L-threonine 3-deh 99.9 1.5E-26 3.3E-31 198.5 15.2 175 17-216 1-178 (341)
65 cd08265 Zn_ADH3 Alcohol dehydr 99.9 1.7E-26 3.7E-31 201.7 15.2 178 15-217 27-219 (384)
66 cd08287 FDH_like_ADH3 formalde 99.9 3.3E-26 7.1E-31 196.4 16.4 175 17-216 1-183 (345)
67 cd08262 Zn_ADH8 Alcohol dehydr 99.9 4.7E-26 1E-30 195.2 15.6 164 17-216 1-176 (341)
68 cd08234 threonine_DH_like L-th 99.9 7.2E-26 1.6E-30 193.2 16.1 174 17-216 1-174 (334)
69 cd08258 Zn_ADH4 Alcohol dehydr 99.9 1E-25 2.2E-30 191.1 16.6 177 17-216 1-179 (306)
70 cd05285 sorbitol_DH Sorbitol d 99.9 8.1E-26 1.8E-30 194.2 15.5 175 19-217 1-178 (343)
71 cd08236 sugar_DH NAD(P)-depend 99.9 1.1E-25 2.4E-30 193.0 15.3 174 17-216 1-174 (343)
72 cd08232 idonate-5-DH L-idonate 99.9 2.1E-25 4.5E-30 191.0 15.5 175 21-216 2-180 (339)
73 cd08297 CAD3 Cinnamyl alcohol 99.9 5.1E-25 1.1E-29 188.8 17.0 177 17-216 1-181 (341)
74 KOG0025 Zn2+-binding dehydroge 99.9 1.8E-25 3.9E-30 182.5 12.8 157 12-216 15-176 (354)
75 cd08274 MDR9 Medium chain dehy 99.9 3.8E-25 8.1E-30 190.0 15.3 170 17-217 1-194 (350)
76 PF08240 ADH_N: Alcohol dehydr 99.9 5.9E-26 1.3E-30 164.8 8.6 108 41-170 1-109 (109)
77 cd05281 TDH Threonine dehydrog 99.9 1.1E-24 2.3E-29 187.1 15.1 175 17-216 1-178 (341)
78 cd08292 ETR_like_2 2-enoyl thi 99.9 9.7E-25 2.1E-29 185.3 14.1 151 17-217 1-156 (324)
79 TIGR02817 adh_fam_1 zinc-bindi 99.9 8.2E-25 1.8E-29 186.9 13.6 153 18-216 1-164 (336)
80 cd08291 ETR_like_1 2-enoyl thi 99.9 4E-24 8.6E-29 182.4 13.1 151 17-217 1-160 (324)
81 TIGR03366 HpnZ_proposed putati 99.9 2E-24 4.2E-29 181.1 10.3 128 73-216 1-135 (280)
82 cd08290 ETR 2-enoyl thioester 99.9 5.6E-24 1.2E-28 182.2 13.1 152 17-216 1-162 (341)
83 cd08293 PTGR2 Prostaglandin re 99.9 1.8E-23 3.9E-28 179.5 14.7 138 29-217 23-171 (345)
84 TIGR00692 tdh L-threonine 3-de 99.9 1.9E-23 4.2E-28 179.2 14.3 169 23-216 5-176 (340)
85 PRK10754 quinone oxidoreductas 99.9 2.9E-23 6.3E-28 176.8 13.9 153 16-216 1-156 (327)
86 cd08248 RTN4I1 Human Reticulon 99.9 3.1E-23 6.7E-28 178.1 13.9 154 17-216 1-178 (350)
87 cd08295 double_bond_reductase_ 99.9 3.1E-23 6.8E-28 177.9 13.8 151 15-217 6-168 (338)
88 cd05188 MDR Medium chain reduc 99.9 3.2E-23 7E-28 170.7 12.5 148 43-216 1-149 (271)
89 cd08276 MDR7 Medium chain dehy 99.9 1.3E-22 2.9E-27 172.5 16.6 172 17-216 1-175 (336)
90 cd08249 enoyl_reductase_like e 99.9 5.7E-23 1.2E-27 176.5 13.3 158 17-216 1-170 (339)
91 PLN03154 putative allyl alcoho 99.9 1.5E-22 3.3E-27 174.8 15.6 156 10-217 2-175 (348)
92 cd05280 MDR_yhdh_yhfp Yhdh and 99.9 1.7E-22 3.7E-27 171.4 15.3 155 17-216 1-162 (325)
93 cd08250 Mgc45594_like Mgc45594 99.9 1.6E-22 3.4E-27 172.3 15.1 148 17-216 2-155 (329)
94 PTZ00354 alcohol dehydrogenase 99.9 1.3E-22 2.8E-27 172.6 14.0 152 16-216 1-156 (334)
95 cd08244 MDR_enoyl_red Possible 99.9 2.9E-22 6.3E-27 169.9 14.8 152 17-216 1-158 (324)
96 cd08247 AST1_like AST1 is a cy 99.9 3.5E-22 7.6E-27 172.1 14.9 155 18-216 2-167 (352)
97 cd08243 quinone_oxidoreductase 99.9 4.3E-22 9.4E-27 168.1 14.9 155 17-216 1-158 (320)
98 cd08271 MDR5 Medium chain dehy 99.9 5.4E-22 1.2E-26 167.9 15.1 154 17-216 1-157 (325)
99 cd08252 AL_MDR Arginate lyase 99.9 5.1E-22 1.1E-26 169.5 14.5 154 17-216 1-165 (336)
100 cd08294 leukotriene_B4_DH_like 99.9 6E-22 1.3E-26 168.6 14.7 144 16-217 2-160 (329)
101 TIGR02823 oxido_YhdH putative 99.9 8.9E-22 1.9E-26 167.3 15.5 154 18-216 1-161 (323)
102 TIGR02825 B4_12hDH leukotriene 99.9 5.8E-22 1.2E-26 169.1 14.2 131 29-217 19-155 (325)
103 cd08289 MDR_yhfp_like Yhfp put 99.9 8.6E-22 1.9E-26 167.4 14.6 155 17-216 1-162 (326)
104 cd08270 MDR4 Medium chain dehy 99.9 6.6E-22 1.4E-26 166.5 13.5 146 17-216 1-148 (305)
105 cd08273 MDR8 Medium chain dehy 99.9 1E-21 2.2E-26 167.1 14.8 151 17-216 1-155 (331)
106 cd08253 zeta_crystallin Zeta-c 99.9 1.6E-21 3.4E-26 164.3 14.4 156 17-216 1-160 (325)
107 cd05276 p53_inducible_oxidored 99.9 1.9E-21 4.1E-26 163.5 13.3 151 17-216 1-155 (323)
108 cd08272 MDR6 Medium chain dehy 99.9 2.7E-21 5.8E-26 163.3 14.2 156 17-216 1-160 (326)
109 cd08288 MDR_yhdh Yhdh putative 99.9 7.2E-21 1.6E-25 161.6 15.0 155 17-216 1-162 (324)
110 cd08268 MDR2 Medium chain dehy 99.9 1.1E-20 2.4E-25 159.5 14.6 156 17-216 1-160 (328)
111 cd05289 MDR_like_2 alcohol deh 99.8 1E-20 2.2E-25 158.5 13.0 154 17-216 1-160 (309)
112 cd08269 Zn_ADH9 Alcohol dehydr 99.8 2.4E-20 5.1E-25 157.4 13.2 139 24-216 3-144 (312)
113 cd05282 ETR_like 2-enoyl thioe 99.8 2E-20 4.3E-25 158.6 12.4 139 29-216 14-154 (323)
114 cd05286 QOR2 Quinone oxidoredu 99.8 4.6E-20 1E-24 154.8 14.5 149 18-216 1-152 (320)
115 cd08275 MDR3 Medium chain dehy 99.8 6.3E-20 1.4E-24 155.9 13.9 150 18-216 1-154 (337)
116 TIGR02824 quinone_pig3 putativ 99.8 1.4E-19 3.1E-24 152.6 13.6 151 17-216 1-155 (325)
117 cd08267 MDR1 Medium chain dehy 99.8 1.2E-19 2.7E-24 153.1 12.5 141 30-216 15-159 (319)
118 KOG1198 Zinc-binding oxidoredu 99.8 2E-19 4.3E-24 154.8 11.8 140 29-217 20-174 (347)
119 cd05288 PGDH Prostaglandin deh 99.8 4.3E-19 9.4E-24 151.0 13.6 146 17-216 2-161 (329)
120 cd08241 QOR1 Quinone oxidoredu 99.8 7.5E-19 1.6E-23 147.9 14.2 150 17-216 1-155 (323)
121 cd08251 polyketide_synthase po 99.8 5.4E-19 1.2E-23 147.8 12.4 133 36-216 2-136 (303)
122 cd05195 enoyl_red enoyl reduct 99.8 2.5E-18 5.4E-23 142.2 11.1 123 42-216 1-124 (293)
123 smart00829 PKS_ER Enoylreducta 99.7 3.6E-17 7.8E-22 135.3 10.4 118 46-216 2-120 (288)
124 COG2130 Putative NADP-dependen 99.7 1.2E-16 2.6E-21 132.0 11.6 135 29-216 27-166 (340)
125 cd08255 2-desacetyl-2-hydroxye 99.5 3.3E-14 7.1E-19 118.3 8.3 99 63-216 14-112 (277)
126 KOG1196 Predicted NAD-dependen 99.3 4.5E-11 9.8E-16 98.9 13.1 135 29-217 22-170 (343)
127 KOG1202 Animal-type fatty acid 99.2 1E-11 2.3E-16 117.1 3.9 130 29-217 1429-1569(2376)
128 PF13823 ADH_N_assoc: Alcohol 95.3 0.019 4.1E-07 29.3 2.2 22 17-39 1-22 (23)
129 TIGR01035 hemA glutamyl-tRNA r 93.3 0.00027 5.8E-09 62.8 -12.4 107 72-216 88-194 (417)
130 PTZ00414 10 kDa heat shock pro 91.1 0.62 1.3E-05 33.0 5.0 24 79-102 46-73 (100)
131 cd00320 cpn10 Chaperonin 10 Kd 88.3 0.83 1.8E-05 31.9 3.9 25 78-102 35-68 (93)
132 PRK00364 groES co-chaperonin G 87.5 0.85 1.8E-05 32.0 3.5 25 78-102 36-69 (95)
133 PRK14533 groES co-chaperonin G 86.2 1.4 3E-05 30.7 4.0 25 78-102 36-64 (91)
134 PRK00517 prmA ribosomal protei 83.7 1.4 2.9E-05 36.3 3.6 53 155-212 78-130 (250)
135 PF00166 Cpn10: Chaperonin 10 81.2 2 4.4E-05 29.8 3.2 26 78-103 35-69 (93)
136 cd05213 NAD_bind_Glutamyl_tRNA 80.8 0.27 5.8E-06 42.0 -1.7 49 166-216 140-192 (311)
137 COG0234 GroS Co-chaperonin Gro 76.6 4.7 0.0001 28.2 3.8 23 79-101 37-68 (96)
138 PRK09424 pntA NAD(P) transhydr 68.7 3.3 7.2E-05 37.9 2.0 19 199-217 162-180 (509)
139 PRK12771 putative glutamate sy 65.8 3.7 8E-05 38.0 1.8 20 198-217 133-152 (564)
140 PRK00045 hemA glutamyl-tRNA re 60.9 1.7 3.7E-05 38.8 -1.3 27 72-98 90-116 (423)
141 KOG1641 Mitochondrial chaperon 59.5 13 0.00029 26.2 3.2 29 75-103 41-78 (104)
142 cd00401 AdoHcyase S-adenosyl-L 57.8 8.1 0.00018 34.5 2.4 28 189-216 188-216 (413)
143 cd06919 Asp_decarbox Aspartate 53.1 13 0.00027 26.8 2.3 33 72-104 58-90 (111)
144 PF02261 Asp_decarbox: Asparta 52.9 9.3 0.0002 27.7 1.6 32 72-103 59-90 (116)
145 PF10589 NADH_4Fe-4S: NADH-ubi 51.7 4.2 9E-05 24.4 -0.3 13 104-116 14-26 (46)
146 PRK05476 S-adenosyl-L-homocyst 51.5 20 0.00043 32.2 3.8 29 188-216 197-226 (425)
147 TIGR00223 panD L-aspartate-alp 50.2 15 0.00033 27.0 2.3 32 72-103 59-90 (126)
148 PRK05449 aspartate alpha-decar 49.6 15 0.00032 27.1 2.2 33 72-104 59-91 (126)
149 PF08541 ACP_syn_III_C: 3-Oxoa 46.9 23 0.00049 23.8 2.8 22 189-210 56-77 (90)
150 PRK08324 short chain dehydroge 45.5 9.5 0.00021 36.2 0.9 51 155-216 386-437 (681)
151 KOG2915 tRNA(1-methyladenosine 41.4 43 0.00093 28.4 4.0 74 131-211 40-115 (314)
152 COG0853 PanD Aspartate 1-decar 37.7 27 0.00058 25.6 2.0 33 72-104 58-90 (126)
153 cd01080 NAD_bind_m-THF_DH_Cycl 37.2 46 0.001 25.7 3.5 37 179-215 21-58 (168)
154 TIGR00561 pntA NAD(P) transhyd 33.3 25 0.00054 32.3 1.6 18 200-217 162-179 (511)
155 PRK11873 arsM arsenite S-adeno 32.7 25 0.00054 29.0 1.4 17 196-212 72-88 (272)
156 PF12242 Eno-Rase_NADH_b: NAD( 32.7 29 0.00062 23.3 1.4 19 198-216 35-54 (78)
157 TIGR00936 ahcY adenosylhomocys 31.9 50 0.0011 29.4 3.2 28 189-216 181-209 (406)
158 PRK12550 shikimate 5-dehydroge 31.4 43 0.00092 28.1 2.6 20 197-216 117-136 (272)
159 PF10844 DUF2577: Protein of u 29.8 55 0.0012 22.9 2.6 12 91-102 76-87 (100)
160 cd06819 PLPDE_III_LS_D-TA Type 29.1 1.3E+02 0.0027 25.9 5.3 19 90-108 315-333 (358)
161 PRK12548 shikimate 5-dehydroge 26.0 51 0.0011 27.7 2.2 17 200-216 124-140 (289)
162 PLN02494 adenosylhomocysteinas 24.7 56 0.0012 29.8 2.3 27 190-216 241-268 (477)
163 TIGR02853 spore_dpaA dipicolin 24.3 35 0.00076 28.8 0.9 16 201-216 150-165 (287)
164 PRK13940 glutamyl-tRNA reducta 23.6 66 0.0014 28.7 2.5 19 198-216 177-195 (414)
165 PRK12549 shikimate 5-dehydroge 23.6 60 0.0013 27.3 2.1 17 200-216 125-141 (284)
166 TIGR01318 gltD_gamma_fam gluta 23.2 39 0.00084 30.5 1.0 16 201-216 140-155 (467)
167 TIGR00406 prmA ribosomal prote 23.0 1.3E+02 0.0028 25.2 4.1 14 199-212 157-170 (288)
168 PF14031 D-ser_dehydrat: Putat 22.9 52 0.0011 22.7 1.4 31 76-107 52-82 (94)
169 PF01135 PCMT: Protein-L-isoas 22.8 99 0.0021 24.8 3.2 19 193-211 64-82 (209)
170 PRK14027 quinate/shikimate deh 22.2 64 0.0014 27.2 2.0 17 200-216 125-141 (283)
171 PRK12769 putative oxidoreducta 22.2 41 0.00089 31.8 1.0 18 200-217 325-342 (654)
172 PRK08306 dipicolinate synthase 22.0 95 0.0021 26.2 3.1 16 201-216 151-166 (296)
173 PLN03209 translocon at the inn 21.8 60 0.0013 30.4 1.9 22 195-216 73-95 (576)
174 COG1086 Predicted nucleoside-d 21.3 60 0.0013 30.3 1.8 17 199-215 247-264 (588)
175 COG4046 Uncharacterized protei 20.5 74 0.0016 27.4 2.0 17 198-214 348-365 (368)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=4.1e-46 Score=314.72 Aligned_cols=181 Identities=33% Similarity=0.491 Sum_probs=170.8
Q ss_pred CceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 14 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|++|||+++.+++++++++|++.|+|+++||||+|+|+|||++|++.+.|.++...+|+++|||++|+|+++|++|++|+
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k 80 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK 80 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence 46799999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCCEEee-ecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCC
Q 027867 94 EGDVVIP-HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (217)
Q Consensus 94 vGd~V~~-~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~ 172 (217)
+||||.+ +...+|+.|++|++|++++|++... .|++.+| +||||+++++++++++|+
T Consensus 81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP~ 138 (339)
T COG1064 81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIPE 138 (339)
T ss_pred CCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECCC
Confidence 9999999 8889999999999999999999776 6666776 999999999999999999
Q ss_pred CCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++++++||.+.|+..|.|+++ +..+++||++|+|+|+|++|.+|
T Consensus 139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~a 182 (339)
T COG1064 139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMA 182 (339)
T ss_pred CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHH
Confidence 999999999999999999965 66999999999999999988653
No 2
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=5.9e-44 Score=297.24 Aligned_cols=201 Identities=46% Similarity=0.768 Sum_probs=193.8
Q ss_pred ceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
|++||++..+.++||+++|+.+++|+++|||||+.|+|+||+|...++|.++.. +|.++|||++|+|++||+.|+.+++
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp 79 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP 79 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence 458999999999999999999999999999999999999999999999999886 9999999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
||+|+..+...|++|.+|++|+.++|...+...+.|...||+.+++ .++.+.+|+.|.++|+||.++++.++++++++.
T Consensus 80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~ 158 (366)
T COG1062 80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA 158 (366)
T ss_pred CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCCC
Confidence 9999999999999999999999999999888888899999999998 899999999999999999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+++.++++.|...|.+.++.+.+++++|++|.|+|.|++|++|
T Consensus 159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaa 201 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAA 201 (366)
T ss_pred CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHH
Confidence 9999999999999999999999999999999999999999864
No 3
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.9e-43 Score=288.63 Aligned_cols=206 Identities=55% Similarity=0.928 Sum_probs=195.8
Q ss_pred CCCCceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCC
Q 027867 11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD 90 (217)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~ 90 (217)
.+.+.++||++.+++++||.++|+.+++|+.+||+||++++++||+|.+.++|..+...||.|+|||++|+|+++|+.|+
T Consensus 2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~ 81 (375)
T KOG0022|consen 2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT 81 (375)
T ss_pred CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence 35778999999999999999999999999999999999999999999999999987788999999999999999999999
Q ss_pred CCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCcccccCCCceeeeccccceeeeeEEeccccEEE
Q 027867 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK 169 (217)
Q Consensus 91 ~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ 169 (217)
++++||+|+..+...|++|.+|+++..|+|...+.+.+.+.. .||.++|. ..+++.|||.+.++|+||.+++...+++
T Consensus 82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~k 160 (375)
T KOG0022|consen 82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVAK 160 (375)
T ss_pred ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeEe
Confidence 999999999999999999999999999999999888655555 59999999 8999999999999999999999999999
Q ss_pred cCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 170 ~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
|++..+++.+++|.|.+.|+|.|++..+++++|+++.|+|.|++|+++
T Consensus 161 Id~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav 208 (375)
T KOG0022|consen 161 IDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAV 208 (375)
T ss_pred cCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHH
Confidence 999999999999999999999999999999999999999999999863
No 4
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-41 Score=277.53 Aligned_cols=178 Identities=31% Similarity=0.489 Sum_probs=162.7
Q ss_pred ceeeeEEeccCCCCeEEEEeecCCC-CCCeEEEEEeEeeCChhhhhhhhcCCCC---CCCCeeeeecceEEEEEeCCCCC
Q 027867 15 IQCRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVD 90 (217)
Q Consensus 15 ~~~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~a~~i~~~D~~~~~g~~~~---~~~p~ilG~e~~G~Vv~vG~~v~ 90 (217)
..|+|+++...++ +++++.|.|++ .|+||+|+++++|||++|+|.+...... .+.|+++|||.+|+|+++|+.|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 4589999999999 99999999988 8999999999999999999999765433 46899999999999999999999
Q ss_pred CCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCcccccCCCceeeeccccceeeeeEEeccccEEE
Q 027867 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK 169 (217)
Q Consensus 91 ~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ 169 (217)
+|++||||++.+..+|+.|++|++|++|+|++..+- +.. .+| ++++|++.+++++++
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~---atpp~~G-------------------~la~y~~~~~dfc~K 139 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC---ATPPVDG-------------------TLAEYYVHPADFCYK 139 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCccccc---cCCCcCC-------------------ceEEEEEechHheee
Confidence 999999999999999999999999999999999874 222 344 999999999999999
Q ss_pred cCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 170 ~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+|++++++++|++. +++++++ +.+++++++|++|||+|||++|+++
T Consensus 140 LPd~vs~eeGAl~e-PLsV~~H-Acr~~~vk~Gs~vLV~GAGPIGl~t 185 (354)
T KOG0024|consen 140 LPDNVSFEEGALIE-PLSVGVH-ACRRAGVKKGSKVLVLGAGPIGLLT 185 (354)
T ss_pred CCCCCchhhccccc-chhhhhh-hhhhcCcccCCeEEEECCcHHHHHH
Confidence 99999999999998 8999999 5689999999999999999999753
No 5
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-39 Score=266.62 Aligned_cols=191 Identities=29% Similarity=0.418 Sum_probs=169.5
Q ss_pred CCCCceeeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCC
Q 027867 11 AGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88 (217)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~ 88 (217)
...|.+.++|.+..+++. +++.++++|+++++||+|+++++|||++|++.+.+.++..++|.++|||++|+|+++|++
T Consensus 4 ~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~ 83 (360)
T KOG0023|consen 4 MSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSN 83 (360)
T ss_pred ccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCC
Confidence 457899999999998884 667999999999999999999999999999999999988899999999999999999999
Q ss_pred CCCCCCCCEEee-ecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccE
Q 027867 89 VDGVVEGDVVIP-HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV 167 (217)
Q Consensus 89 v~~~~vGd~V~~-~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~ 167 (217)
|++|++||+|-+ +...+|..|++|+++.+++|++..++ ..|...||...+ |+|++|+++++.++
T Consensus 84 V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~~DGt~~~--------------ggf~~~~~v~~~~a 148 (360)
T KOG0023|consen 84 VTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVYHDGTITQ--------------GGFQEYAVVDEVFA 148 (360)
T ss_pred cccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccccCCCCcc--------------CccceeEEEeeeeE
Confidence 999999999955 44678999999999999999975543 356666662222 48999999999999
Q ss_pred EEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 168 ~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++||++++.+.||-+.|+..|.|.++ ...++.||++|-|.|+|++|.++
T Consensus 149 ~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~a 197 (360)
T KOG0023|consen 149 IKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMA 197 (360)
T ss_pred EECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHH
Confidence 99999999999999999999999954 66788899999999997788653
No 6
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=2.8e-36 Score=262.06 Aligned_cols=200 Identities=49% Similarity=0.783 Sum_probs=166.9
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++...+++++++++|.|+|+++||+|||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|++||
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd 81 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence 78999988877799999999999999999999999999999999988765456789999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
+|++.+..+|+.|.+|+.|+.++|++.......|...+|..++. ..|.+.++..+.|+|+||++++.+.++++|+++++
T Consensus 82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~ 160 (368)
T TIGR02818 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL 160 (368)
T ss_pred EEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence 99998888999999999999999987543212233222221111 01122223223469999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++++.+.+++.|||+++.+..++++|++|||+|+|++|+++
T Consensus 161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a 201 (368)
T TIGR02818 161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSV 201 (368)
T ss_pred HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHH
Confidence 99999999999999988788899999999999999999763
No 7
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=8.8e-36 Score=258.73 Aligned_cols=201 Identities=53% Similarity=0.972 Sum_probs=167.4
Q ss_pred eeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
+|||+++.++++++++++++.|+|+++||+||+.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 81 (369)
T cd08301 2 TCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKPG 81 (369)
T ss_pred ccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCccccC
Confidence 68999999887779999999999999999999999999999999998876555678999999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCC-CcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ-TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G-~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
|+|++.+..+|+.|..|..+.+++|++.......|....+ ...+. ..|...+++.+.|+|+||++++.+.++++|+++
T Consensus 82 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~ 160 (369)
T cd08301 82 DHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA 160 (369)
T ss_pred CEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence 9999999999999999999999999886532112221110 00000 112222333344699999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++++++++.+++.|+|+++++..++++|++|||+|+|++|+++
T Consensus 161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a 203 (369)
T cd08301 161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAV 203 (369)
T ss_pred CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHH
Confidence 9999999998999999988888899999999999999999753
No 8
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=1.5e-35 Score=258.61 Aligned_cols=205 Identities=54% Similarity=0.955 Sum_probs=166.7
Q ss_pred CCceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC-CCCCCeeeeecceEEEEEeCCCCCC
Q 027867 13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDG 91 (217)
Q Consensus 13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~-~~~~p~ilG~e~~G~Vv~vG~~v~~ 91 (217)
.|++|||+++.++++++.+++++.|.|+++||+||+++++||++|++.+.|.+. ...+|.++|||++|+|+++|+++++
T Consensus 7 ~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~ 86 (381)
T PLN02740 7 KVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVED 86 (381)
T ss_pred cceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCCc
Confidence 667899999999887689999999999999999999999999999999988753 2357899999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCC-CCCCCCCcccccC-CCceeeeccccceeeeeEEeccccEEE
Q 027867 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP-WMPRDQTSRFKDL-RGETIHHFVSVSSFSEYTVLDIAHVVK 169 (217)
Q Consensus 92 ~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~-g~~~~G~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~ 169 (217)
|++||+|++.+..+|+.|.+|+.+.+++|++....... ....+|...++.. .+...+++...|+|+||++++.+.+++
T Consensus 87 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~ 166 (381)
T PLN02740 87 LKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVK 166 (381)
T ss_pred CCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeEE
Confidence 99999999999999999999999999999886532100 0000110000000 000112222346999999999999999
Q ss_pred cCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 170 ~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+|+++++++++.+.+++.|||+++++.+++++|++|||+|+|++|+++
T Consensus 167 iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a 214 (381)
T PLN02740 167 IDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAV 214 (381)
T ss_pred CCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHH
Confidence 999999999999999999999988788899999999999999999753
No 9
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=2.1e-35 Score=256.42 Aligned_cols=201 Identities=49% Similarity=0.836 Sum_probs=167.6
Q ss_pred eeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
+|||+++.+.+++++++++|.|+|+++||+||+++++||++|++.+.+.++...+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG 81 (368)
T cd08300 2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG 81 (368)
T ss_pred cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence 58999988887779999999999999999999999999999999998876555688999999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
|+|++.+..+|+.|.+|+.++++.|++.....+.|...+|..++. .+|...+++.+.|+|+||++++.+.++++|++++
T Consensus 82 drV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~ 160 (368)
T cd08300 82 DHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP 160 (368)
T ss_pred CEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccc-cCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence 999998889999999999999999987643222232222211111 1122223333446999999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+++++.+.+++.|||+++++..++++|++|||+|+|++|+++
T Consensus 161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a 202 (368)
T cd08300 161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAV 202 (368)
T ss_pred hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHH
Confidence 999999998999999988788899999999999999999763
No 10
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=5.6e-35 Score=254.03 Aligned_cols=199 Identities=40% Similarity=0.641 Sum_probs=161.7
Q ss_pred eeeEEeccCCC--------CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCC
Q 027867 17 CRAAIATAPGE--------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88 (217)
Q Consensus 17 ~~a~~~~~~~~--------~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~ 88 (217)
|||+++.+++. .+++++++.|+|+++||+|||.+++||++|++++.+.++. .+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence 78999988653 3899999999999999999999999999999999887543 57899999999999999999
Q ss_pred CCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEE
Q 027867 89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV 168 (217)
Q Consensus 89 v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~ 168 (217)
+++|++||+|++.+...|+.|..|+.|++++|++.......|...+|..++.. .+....+..+.|+|+||++++.+.++
T Consensus 80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~-~~~~~~~~~g~G~~aey~~v~~~~~~ 158 (371)
T cd08281 80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRL-RGGEINHHLGVSAFAEYAVVSRRSVV 158 (371)
T ss_pred CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccc-cCcccccccCcccceeeEEecccceE
Confidence 99999999999888889999999999999999876432222222221111100 00001111223599999999999999
Q ss_pred EcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 169 ~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++|+++++++|+.+.+++.|||.++.+..++++|++|||+|+|++|+++
T Consensus 159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a 207 (371)
T cd08281 159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSA 207 (371)
T ss_pred ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHH
Confidence 9999999999999998999999988788899999999999999999753
No 11
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=1.6e-34 Score=250.44 Aligned_cols=188 Identities=24% Similarity=0.360 Sum_probs=161.0
Q ss_pred CCCCceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCC
Q 027867 11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD 90 (217)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~ 90 (217)
...|++++++.+.+..+.+++.+++.|+|+++||+|||.+++||++|++++.+.++...+|.++|||++|+|+++|++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~ 86 (360)
T PLN02586 7 EEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVK 86 (360)
T ss_pred hhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCC
Confidence 45788888888888766699999999999999999999999999999999887654446789999999999999999999
Q ss_pred CCCCCCEEeeec-ccCCCCCccccCCCCCCCCCCCCCC----CCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc
Q 027867 91 GVVEGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA 165 (217)
Q Consensus 91 ~~~vGd~V~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~ 165 (217)
+|++||+|++.+ ..+|+.|.+|+.|.+++|++..+.. ..|...+ |+|+||++++.+
T Consensus 87 ~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~ 147 (360)
T PLN02586 87 KFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNY-------------------GGYSDMIVVDQH 147 (360)
T ss_pred ccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCC-------------------CccceEEEEchH
Confidence 999999998654 3579999999999999998765320 0122223 399999999999
Q ss_pred cEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 166 ~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
.++++|+++++++++.+.+++.|+|+++.+...+++|++|||.|+|++|+++
T Consensus 148 ~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a 199 (360)
T PLN02586 148 FVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVA 199 (360)
T ss_pred HeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHH
Confidence 9999999999999999999999999977666667899999999999999763
No 12
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=3.2e-34 Score=248.80 Aligned_cols=199 Identities=50% Similarity=0.913 Sum_probs=166.5
Q ss_pred ceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
+++||+++.+.+++++++++|.|.++++||+||+++++||++|++.+.|.++ ..+|.++|||++|+|+++|++++++++
T Consensus 1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08277 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP 79 (365)
T ss_pred CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence 3589999988777799999999999999999999999999999999988754 467899999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
||+|++.+..+|+.|+.|..|.+++|++.... ..|...++...+. ..+...+++.+.|+|+||++++.+.++++|+++
T Consensus 80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l 157 (365)
T cd08277 80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA 157 (365)
T ss_pred CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCccccc-cCCcccccccccccceeeEEEchhheEECCCCC
Confidence 99999988899999999999999999886532 1233332211111 012222223334699999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++.+.+++.|||+++.+..++++|++|||+|+|++|++
T Consensus 158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~ 199 (365)
T cd08277 158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLS 199 (365)
T ss_pred CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHH
Confidence 999999999999999998778889999999999998999875
No 13
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=4.6e-34 Score=244.92 Aligned_cols=178 Identities=28% Similarity=0.431 Sum_probs=157.6
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
|||+++.+++. +++++++.|+|+++||+||+.+++||++|++.+.+.+.. ..+|.++|||++|+|+++|++|++|++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 78999998776 999999999999999999999999999999988765432 2357899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
|+|++.+...|+.|+.|+.|++++|.+... ..|...+| +|+||++++.+.++++|++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~ 138 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS 138 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence 999999999999999999999999987653 13333344 999999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+++|+.+.+++.|||+++ +..++++|++|||+|+|++|+++
T Consensus 139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~ 179 (339)
T cd08239 139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGA 179 (339)
T ss_pred HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHH
Confidence 999999999999999965 66789999999999999999753
No 14
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=1.2e-33 Score=246.39 Aligned_cols=197 Identities=49% Similarity=0.928 Sum_probs=158.3
Q ss_pred eeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
.|||+++.++++.+++++++.|+|+++||+|||++++||++|++.+.+.. .+|.++|||++|+|+++|+++++|++|
T Consensus 12 ~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~~~G 88 (378)
T PLN02827 12 TCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEFEKG 88 (378)
T ss_pred eeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcccCCC
Confidence 49999999887669999999999999999999999999999999887642 467899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~-~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
|+|++.+..+|+.|.+|+++.+++|++.... ..|... ++...|. ..|....++...|+|+||++++++.++++|+++
T Consensus 89 drV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l 166 (378)
T PLN02827 89 DHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLA 166 (378)
T ss_pred CEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCccccc-ccCcccccccccccceeeEEechhheEECCCCC
Confidence 9999998889999999999999999875321 001000 0000000 000000000112599999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++++++.+.+++.++|+++++..++++|++|||+|+|++|+++
T Consensus 167 ~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~ 209 (378)
T PLN02827 167 PLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSV 209 (378)
T ss_pred CHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHH
Confidence 9999999888989999877777889999999999999999753
No 15
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=5.9e-34 Score=246.44 Aligned_cols=191 Identities=34% Similarity=0.590 Sum_probs=160.4
Q ss_pred eeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
+|||+++.++++++++++++.|+|+++||+|||.+++||++|++.+.|.++. .+|.++|||++|+|+++|+++++|++|
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG 79 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence 5899999999888999999999999999999999999999999998886543 578999999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCC-CCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
|+|++.+...|+.|..|..|+.++|....... ..+. .+| .......+.|+|+||+.++.+.++++|+++
T Consensus 80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~-~~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~ 149 (358)
T TIGR03451 80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTL-TDG---------TELSPALGIGAFAEKTLVHAGQCTKVDPAA 149 (358)
T ss_pred CEEEEccCCCCCCChHHhCcCcccCcCcccccccccc-ccC---------cccccccccccccceEEEehhheEECCCCC
Confidence 99999999999999999999999997532110 0000 001 000000123599999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++++++.+.+++.|+|.++.+..++++|++|||+|+|++|+++
T Consensus 150 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a 192 (358)
T TIGR03451 150 DPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAA 192 (358)
T ss_pred ChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHH
Confidence 9999999998999999877788899999999999999999753
No 16
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=7.6e-34 Score=248.89 Aligned_cols=182 Identities=27% Similarity=0.372 Sum_probs=150.3
Q ss_pred eeeEEeccCCCCeEEEEeecCCCC-------CCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPN-------SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV 89 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~-------~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v 89 (217)
|||+++.++++ ++++++|.|+|+ ++||||||+++|||++|++++.|.++ ..+|.++|||++|+|+++|++|
T Consensus 3 mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~V 80 (393)
T TIGR02819 3 NRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRDV 80 (393)
T ss_pred ceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCcc
Confidence 89999999887 999999999874 68999999999999999999988653 3578999999999999999999
Q ss_pred CCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCC---CCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc-
Q 027867 90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI---SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA- 165 (217)
Q Consensus 90 ~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~- 165 (217)
++|++||||++.+...|+.|++|++|++++|++..... ..|....| ...|+|+||++++..
T Consensus 81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~~~ 145 (393)
T TIGR02819 81 EFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG---------------GWVGGQSEYVMVPYAD 145 (393)
T ss_pred ccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC---------------CCCCceEEEEEechhh
Confidence 99999999999999999999999999999998753210 01110000 001499999999964
Q ss_pred -cEEEcCCCCCc----cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 166 -HVVKVDPTVPP----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 166 -~~~~~p~~~~~----~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
.++++|++++. +.++.+.+++.++|+++ +..++++|++|||.|+|++|++
T Consensus 146 ~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~ 200 (393)
T TIGR02819 146 FNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLA 200 (393)
T ss_pred CceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 79999998653 34566777899999965 5688999999999988999975
No 17
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=7e-33 Score=238.44 Aligned_cols=180 Identities=22% Similarity=0.355 Sum_probs=148.3
Q ss_pred ceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhh-cCCC--CCCCCeeeeecceEEEEEeCCCCCC
Q 027867 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVDG 91 (217)
Q Consensus 15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~-g~~~--~~~~p~ilG~e~~G~Vv~vG~~v~~ 91 (217)
..+|+++++++++ +++++++.| ++++||||||++++||++|++++. +.+. ...+|.++|||++|+|+++ ++++
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~ 78 (343)
T PRK09880 3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG 78 (343)
T ss_pred ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence 4588999999988 999999987 689999999999999999999875 3322 2357899999999999999 7889
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcC
Q 027867 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (217)
Q Consensus 92 ~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p 171 (217)
|++||+|++.+..+|+.|++|+.|.+++|++... .|.... +....|+|+||++++++.++++|
T Consensus 79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~P 141 (343)
T PRK09880 79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPYP 141 (343)
T ss_pred CCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccc--------------cCCCCCceeeeEEechHHeEECC
Confidence 9999999999999999999999999999988653 121000 00012499999999999999999
Q ss_pred CCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 172 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++++++++++. .++++||+++ +.....+|++|||+|+|++|+++
T Consensus 142 ~~l~~~~aa~~-~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~a 185 (343)
T PRK09880 142 EKADEKVMAFA-EPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLI 185 (343)
T ss_pred CCCCHHHHHhh-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHH
Confidence 99998876644 4788999965 55566789999999999999763
No 18
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=5.1e-33 Score=240.17 Aligned_cols=180 Identities=28% Similarity=0.381 Sum_probs=144.3
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCe-eeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR-ILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~-ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
|++++++.++...++++.+.|.++++||+|||.++|||++|++.+.+..+....+. ++|||++|+|+++| .++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G 79 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence 56777777775344777877778899999999999999999999999866655555 99999999999999 77789999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCC--CCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEE-cCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI--SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK-VDP 172 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~--~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~-~p~ 172 (217)
|||++.+..+|+.|.+|++|.+++|++.++.. ..+...+| +|+||+.+|.++.+. +|+
T Consensus 80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G-------------------~~aEyv~vp~~~~~~~~pd 140 (350)
T COG1063 80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG-------------------GFAEYVRVPADFNLAKLPD 140 (350)
T ss_pred CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC-------------------ceEEEEEeccccCeecCCC
Confidence 99999999999999999999999999665321 11111334 999999999765555 578
Q ss_pred CCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++ ..+++++..+++++|++.......+++++|+|+|+|++|+++
T Consensus 141 ~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla 184 (350)
T COG1063 141 GI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLA 184 (350)
T ss_pred CC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHH
Confidence 87 455555556999998864455556667799999999999874
No 19
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=100.00 E-value=3.7e-32 Score=236.64 Aligned_cols=202 Identities=47% Similarity=0.817 Sum_probs=166.5
Q ss_pred CCceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCC
Q 027867 13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV 92 (217)
Q Consensus 13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~ 92 (217)
+-.+|||+++..++++++++++|.|++.++||+||+++++||++|++.+.|.+. ..+|.++|||++|+|+++|++++.|
T Consensus 4 ~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~ 82 (373)
T cd08299 4 KVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTV 82 (373)
T ss_pred ccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccC
Confidence 345699999988877799999999999999999999999999999999988753 3578899999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCC
Q 027867 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (217)
Q Consensus 93 ~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~ 172 (217)
++||+|++.+..+|++|.+|..++.+.|+........|...++..+++ -.|.+.+++.+.|+|+||++++.+.++++|+
T Consensus 83 ~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~ 161 (373)
T cd08299 83 KPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA 161 (373)
T ss_pred CCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeCCC
Confidence 999999998889999999999999999987543111122111111111 1122333443457999999999999999999
Q ss_pred CCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++++++.+++.|||+++.+..++++|++|||+|+|++|++
T Consensus 162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~ 205 (373)
T cd08299 162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLS 205 (373)
T ss_pred CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHH
Confidence 99999999999999999998888899999999999988999975
No 20
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=1.8e-32 Score=234.94 Aligned_cols=174 Identities=25% Similarity=0.358 Sum_probs=151.4
Q ss_pred EEeccCCC----CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 20 AIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 20 ~~~~~~~~----~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
+.+..++. .++++++|.|+|+++||+||+++++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 81 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG 81 (329)
T ss_pred eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence 45555543 38899999999999999999999999999999998876544457899999999999999999999999
Q ss_pred CEEeeecc-cCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 96 d~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
|+|++.+. .+|+.|++|..|++++|++..+ .|...+| +|+||++++.+.++++|+++
T Consensus 82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~ 139 (329)
T TIGR02822 82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPTGY 139 (329)
T ss_pred CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCCCC
Confidence 99987654 5799999999999999988654 3333344 99999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++.+.+++.|||+++ +.+++++|++|||+|+|++|++
T Consensus 140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~ 180 (329)
T TIGR02822 140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHL 180 (329)
T ss_pred CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHH
Confidence 9999998889999999976 5688999999999999999865
No 21
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=4.5e-32 Score=234.40 Aligned_cols=178 Identities=25% Similarity=0.349 Sum_probs=143.3
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC---CCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~---~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++...+.+++++++|.|+|+++||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 588888765434999999999999999999999999999999999887532 246799999999999999999 9999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~ 172 (217)
+||+|+..+...|+.|.+|++|++++|+..... ..|.. .+ |+|+||++++.+.++++|+
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~-------------------G~~aey~~~~~~~~~~~P~ 139 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH-------------------GFMREYFVDDPEYLVKVPP 139 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC-------------------ccceeEEEeccccEEECCC
Confidence 999999988889999999999999999875431 11211 22 4999999999999999999
Q ss_pred CCCccccccccchhhhHHHHHH------HhcCCCCCCEEEEEcCChhccCC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAW------RTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~------~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+++ +.+ .+..++.+++.++. +..++++|++|||+|+|++|++|
T Consensus 140 ~~~-~~a-~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a 188 (355)
T cd08230 140 SLA-DVG-VLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLA 188 (355)
T ss_pred CCC-cce-eecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHH
Confidence 999 444 33345555444322 22346789999999999999763
No 22
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=5.1e-32 Score=236.03 Aligned_cols=179 Identities=25% Similarity=0.360 Sum_probs=148.1
Q ss_pred EEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCCEEe
Q 027867 20 AIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI 99 (217)
Q Consensus 20 ~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~ 99 (217)
++..+..+.+++.+++.|.|+++||+|||.+++||++|++++.|.+....+|.++|||++|+|+++|+++++|++||+|+
T Consensus 10 ~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~ 89 (375)
T PLN02178 10 WAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVG 89 (375)
T ss_pred EEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEEE
Confidence 33444434488899999999999999999999999999999988754335689999999999999999999999999998
Q ss_pred eeccc-CCCCCccccCCCCCCCCCCCCCC----CCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 100 PHFLA-DCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 100 ~~~~~-~c~~c~~c~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
+.+.. +|+.|.+|++|++++|++..+.. ..|...+ |+|+||++++++.++++|+++
T Consensus 90 ~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~lP~~l 150 (375)
T PLN02178 90 VGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQ-------------------GGYSDVIVVDHRFVLSIPDGL 150 (375)
T ss_pred EcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCC-------------------CccccEEEEchHHeEECCCCC
Confidence 66554 69999999999999999865320 0121123 499999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcC-CCCCCEEEEEcCChhccCC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~-~~~g~~VlI~GaG~vG~~a 217 (217)
++++++.+.++..|+|+++.+... .++|++|||.|+|++|+++
T Consensus 151 s~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~a 194 (375)
T PLN02178 151 PSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIA 194 (375)
T ss_pred CHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHH
Confidence 999999999999999996644332 3689999999999999753
No 23
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=6.9e-32 Score=233.67 Aligned_cols=184 Identities=24% Similarity=0.367 Sum_probs=158.1
Q ss_pred ceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
+.++|+++..+++++++++++.|+|+++||+||+++++||++|++.+.+.+....+|.++|||++|+|+++|+++++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~ 87 (357)
T PLN02514 8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTV 87 (357)
T ss_pred ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccC
Confidence 45899999999988999999999999999999999999999999998887644457899999999999999999999999
Q ss_pred CCEEeeecc-cCCCCCccccCCCCCCCCCCCCCCC----CCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEE
Q 027867 95 GDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKIS----PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK 169 (217)
Q Consensus 95 Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~----~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ 169 (217)
||+|++.+. ..|+.|.+|++|++++|++..+... .|...+ |+|+||++++.+.+++
T Consensus 88 Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~ 148 (357)
T PLN02514 88 GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQ-------------------GGFASAMVVDQKFVVK 148 (357)
T ss_pred CCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCC-------------------CccccEEEEchHHeEE
Confidence 999986554 3699999999999999987643200 111112 4999999999999999
Q ss_pred cCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 170 ~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+|+++++++++.+++++.|||+++.+....++|++|||+|+|++|+++
T Consensus 149 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~a 196 (357)
T PLN02514 149 IPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMG 196 (357)
T ss_pred CCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHH
Confidence 999999999999999999999977555566899999999889999753
No 24
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.98 E-value=6.8e-32 Score=232.37 Aligned_cols=172 Identities=23% Similarity=0.221 Sum_probs=141.7
Q ss_pred ceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC----CCCCeeeeecceEEEEEeCCCCC
Q 027867 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIGVVESVGENVD 90 (217)
Q Consensus 15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~----~~~p~ilG~e~~G~Vv~vG~~v~ 90 (217)
|..|+++++++++ ++++|++.|. +++||||||+++|||++|++++.|.+.. ..+|.++|||++|+|+++|.+
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~-- 76 (341)
T cd08237 1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG-- 76 (341)
T ss_pred CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence 3468999999997 9999999995 9999999999999999999999887532 357999999999999998875
Q ss_pred CCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEc
Q 027867 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170 (217)
Q Consensus 91 ~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~ 170 (217)
+|++||+|++.+..+|+.| .| +..++|.+..+ .|...+| +|+||++++.++++++
T Consensus 77 ~~~vGdrV~~~~~~~~~~~-~~--~~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v 131 (341)
T cd08237 77 TYKVGTKVVMVPNTPVEKD-EI--IPENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKL 131 (341)
T ss_pred ccCCCCEEEECCCCCchhc-cc--chhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEEC
Confidence 7999999999887777743 45 35577876543 2222334 9999999999999999
Q ss_pred CCCCCccccccccchhhhHHHHHHH--hcCCCCCCEEEEEcCChhccC
Q 027867 171 DPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 171 p~~~~~~~aa~l~~~~~ta~~a~~~--~~~~~~g~~VlI~GaG~vG~~ 216 (217)
|+++++++|+++. +++++|+++.+ ...+++||+|||+|+|++|++
T Consensus 132 P~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~ 178 (341)
T cd08237 132 PDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYI 178 (341)
T ss_pred CCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHH
Confidence 9999999888665 88889987643 345789999999999999975
No 25
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.97 E-value=4e-31 Score=229.43 Aligned_cols=199 Identities=44% Similarity=0.777 Sum_probs=174.0
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
+||+++.+.+.++++++++.|.++++||+||+.++++|++|++.+.+.+. ...|.++|||++|+|+++|++++.+++||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd 79 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD 79 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence 47888888876699999999999999999999999999999998887654 35678999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
+|++.+..+|+.|.+|+.+.+++|......+..|...+|+..|.. +|.+.+|+.+.|+|++|+.++.+.++++|+++++
T Consensus 80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~ 158 (365)
T cd05279 80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL 158 (365)
T ss_pred EEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCCCH
Confidence 999998889999999999999999887665555555566555553 5566667777789999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++++.+.+++.+||.++.+.+++++|++|||+|+|++|+++
T Consensus 159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a 199 (365)
T cd05279 159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSV 199 (365)
T ss_pred HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHH
Confidence 99999988999999988888899999999999889998763
No 26
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.97 E-value=1.2e-31 Score=229.33 Aligned_cols=155 Identities=30% Similarity=0.345 Sum_probs=138.9
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcC-CCCCCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~-~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++.+.+.+ ++++|+|.|+|+++||||||+|++||+.|++.+.|. .+..++|+++|.|++|+|+++|++|++|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 688999888766 888999999999999999999999999999999987 33356899999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|+... . .+ .+ |+|+||+++|++.++++|++
T Consensus 81 ~GdrV~~~~-~------------------------~~--~~-------------------G~~AEy~~v~a~~~~~~P~~ 114 (326)
T COG0604 81 VGDRVAALG-G------------------------VG--RD-------------------GGYAEYVVVPADWLVPLPDG 114 (326)
T ss_pred CCCEEEEcc-C------------------------CC--CC-------------------CcceeEEEecHHHceeCCCC
Confidence 999998642 0 00 22 49999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
+++++||++++++.|||+++.+..++++|++|||+|+ |+||++|
T Consensus 115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~a 159 (326)
T COG0604 115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAA 159 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHH
Confidence 9999999999999999999988899999999999997 9999754
No 27
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.97 E-value=5.2e-31 Score=227.33 Aligned_cols=174 Identities=26% Similarity=0.465 Sum_probs=150.3
Q ss_pred EEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcC-CCCCCCCeeeeecceEEEEEeCCCCCCCCCCCEE
Q 027867 20 AIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV 98 (217)
Q Consensus 20 ~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~-~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V 98 (217)
+++.+++++++++++|.|.|+++||+||++++++|++|++.+.+. .....+|.++|||++|+|+++|++++.+ +||+|
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 456677766899999999999999999999999999999887443 2234678999999999999999999887 99999
Q ss_pred eeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCC------
Q 027867 99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP------ 172 (217)
Q Consensus 99 ~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~------ 172 (217)
++.+..+|+.|..|+.|.+++|..... .|...+| +|+||++++.+.++++|+
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~~~ 138 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLAAA 138 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccccc
Confidence 999999999999999999999977543 2333334 999999999999999999
Q ss_pred CCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++++++++.+.+++.|+|+++ +..++++|++|||+|+|++|+++
T Consensus 139 ~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a 182 (349)
T TIGR03201 139 GLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYM 182 (349)
T ss_pred CCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHH
Confidence 899999888888999999965 56889999999999999999753
No 28
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.97 E-value=2.1e-30 Score=224.92 Aligned_cols=200 Identities=37% Similarity=0.642 Sum_probs=161.9
Q ss_pred ceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
|+|||+++.+++.++++++.+.|++.++||+||+.++++|++|++.+.+.++ ...|.++|||++|+|+++|+++.+|++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP 79 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence 4689999998766699999999999999999999999999999999888654 346789999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceee-eccccceeeeeEEeccccEEEcCCC
Q 027867 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~-~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
||+|++.+. .|+.|+.|..+..++|.........|...+|...+.+..+.+++ ++...|+|++|+.++.+.++++|++
T Consensus 80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~ 158 (365)
T cd08278 80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD 158 (365)
T ss_pred CCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence 999998764 89999999999999997654321122222221111111111110 1223469999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++++++.+++++.|||.++.+..++++|++|||+|+|++|++
T Consensus 159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~ 201 (365)
T cd08278 159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLA 201 (365)
T ss_pred CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHH
Confidence 9999999999999999998878889999999999988998875
No 29
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=1.3e-30 Score=224.41 Aligned_cols=175 Identities=27% Similarity=0.454 Sum_probs=148.6
Q ss_pred eeeEEeccCCCCeEEEEeecCCC-CCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
|||+++++++. ++++++|.|.| .++||+|||+++++|++|++.+.... ...+|.++|||++|+|+++|+++++|++|
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~vG 78 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLHPG 78 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC-CCCCCcccccceEEEEEEeCCCCCCCCCC
Confidence 68999998886 99999999998 58999999999999999987542211 11357899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
|+|++.+..+|+.|++|..|.+++|.+... .|...+| +|+||+.++.+.++++|++++
T Consensus 79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~s 136 (347)
T PRK10309 79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDMP 136 (347)
T ss_pred CEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCCC
Confidence 999999999999999999999999976543 2333344 999999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+++++++. .+.++|++ ++...+++|++|||+|+|++|+++
T Consensus 137 ~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~ 176 (347)
T PRK10309 137 IEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLA 176 (347)
T ss_pred HHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHH
Confidence 99998774 55667875 567788999999999989999753
No 30
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.97 E-value=6e-30 Score=221.28 Aligned_cols=184 Identities=30% Similarity=0.402 Sum_probs=156.5
Q ss_pred eeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCC------
Q 027867 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG------ 91 (217)
Q Consensus 18 ~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~------ 91 (217)
||+++.++++.+++++++.|.|+++||+||+.++++|++|+..+.|.++...+|.++|||++|+|+++|++++.
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~ 81 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence 78999998866999999999999999999999999999999998887653467889999999999999999986
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCC-CCcccccCCCceeeeccccceeeeeEEeccc-cEEE
Q 027867 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVK 169 (217)
Q Consensus 92 ~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~-G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~-~~~~ 169 (217)
|++||+|++.+..+|+.|..|+.+..++|.+.... |...+ +. ....|+|+||++++++ .+++
T Consensus 82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~---~~~~~~~~-------------~~~~g~~a~~~~v~~~~~~~~ 145 (361)
T cd08231 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY---GHEASCDD-------------PHLSGGYAEHIYLPPGTAIVR 145 (361)
T ss_pred cCCCCEEEEcccCCCCCChhHhCcCccccccchhc---cccccccC-------------CCCCcccceEEEecCCCceEE
Confidence 99999999999899999999999999999886543 21110 00 0012499999999986 7999
Q ss_pred cCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 170 ~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+|++++.+.++.+++++.|||.++.+....++|++|||+|+|++|+++
T Consensus 146 lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~ 193 (361)
T cd08231 146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYA 193 (361)
T ss_pred CCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHH
Confidence 999999999998888999999987666666799999999889998753
No 31
>PRK10083 putative oxidoreductase; Provisional
Probab=99.97 E-value=7.7e-30 Score=218.49 Aligned_cols=175 Identities=26% Similarity=0.502 Sum_probs=153.3
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.+++. +++++++.|+|+++||+||+.++++|++|++.+.+.++...+|.++|||++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 79 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE 79 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence 68999998886 99999999999999999999999999999998888765445689999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
+|++.+...|+.|.+|..+++++|.+..+ .+...+ |+|+||+.++.+.++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~ 137 (339)
T PRK10083 80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRD-------------------GGFSEYAVVPAKNAHRIPDAIAD 137 (339)
T ss_pred EEEEccccCCCCCccccCcCcccCCCCce---EEEccC-------------------CcceeeEEechHHeEECcCCCCH
Confidence 99999999999999999999999976543 122223 38999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++. ..++.++|. +.+..++++|++|||+|+|++|++
T Consensus 138 ~~a~~-~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~ 175 (339)
T PRK10083 138 QYAVM-VEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLT 175 (339)
T ss_pred HHHhh-hchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHH
Confidence 88764 457788886 667889999999999999999875
No 32
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.97 E-value=1.4e-29 Score=221.35 Aligned_cols=193 Identities=27% Similarity=0.384 Sum_probs=157.6
Q ss_pred eeeEEeccCCCCeEEEEeecCCCC-CCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~-~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
|||+++.++++ +++++++.|.|. ++||+||+.+++||++|+..+.|.++..++|.++|||++|+|+++|++++++++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 79 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence 68999998866 999999999984 9999999999999999999998887655678999999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCC-CCCCCCCCCcccccCCCceeeec--cccceeeeeEEeccc--cEEEc
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPWMPRDQTSRFKDLRGETIHHF--VSVSSFSEYTVLDIA--HVVKV 170 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~~g~~~~G~~~~~~~~~~~~~~~--~~~g~~a~~~~v~~~--~~~~~ 170 (217)
|+|++.+...|+.|.+|..+++++|++..... ..+. .|....+ ..+ ..++ ...|+|++|++++.+ .++++
T Consensus 80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~--~~~~~~~~~g~~~~~~~v~~~~~~~~~l 154 (386)
T cd08283 80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKL--YGHAGAG-IFG--YSHLTGGYAGGQAEYVRVPFADVGPFKI 154 (386)
T ss_pred CEEEEcCcCCCCCChhhcCCCcccCCCcccccccccc--ccccccc-ccc--cccccCCCCCeeEEEEEcccccCeEEEC
Confidence 99999988889999999999999998765321 0000 0000000 000 0000 013599999999987 89999
Q ss_pred CCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 171 p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
|+++++++++.++..+.|||+++ +..++.+|++|||+|+|++|++
T Consensus 155 p~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~ 199 (386)
T cd08283 155 PDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLF 199 (386)
T ss_pred CCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHH
Confidence 99999999999998999999976 7889999999999988988865
No 33
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.97 E-value=1.6e-29 Score=217.83 Aligned_cols=176 Identities=30% Similarity=0.464 Sum_probs=151.3
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCC---C--------CCCCCeeeeecceEEEEEe
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---F--------PAVFPRILGHEAIGVVESV 85 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~---~--------~~~~p~ilG~e~~G~Vv~v 85 (217)
|||+++.++++ +++++++.|+|.++||+||+.++++|++|++.+.+.. + ...+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 68999998876 9999999999999999999999999999988765321 1 0136889999999999999
Q ss_pred CCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCcccccCCCceeeeccccceeeeeEEecc
Q 027867 86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI 164 (217)
Q Consensus 86 G~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~ 164 (217)
|+++++|++||+|+..+..+|+.|.+|+++..++|....+ .|.. .+ |+|++|++++.
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~a~~~~~~~ 137 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG-------------------GGFAEYVVVPA 137 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC-------------------CceeeEEEech
Confidence 9999999999999999888999999999999999976542 2221 12 39999999999
Q ss_pred ccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 165 ~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+.++++|+++++++++++ .++.|||.++ +..++++|++|||+|+|++|+++
T Consensus 138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a 188 (351)
T cd08233 138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLT 188 (351)
T ss_pred HHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHH
Confidence 999999999999998876 5788999976 78889999999999989888753
No 34
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=1.8e-29 Score=217.60 Aligned_cols=179 Identities=26% Similarity=0.283 Sum_probs=154.9
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.++++ +++++++.|.++++||+||++++++|++|++.+.+.+.....|.++|||++|+|+++|+++++|++||
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd 79 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD 79 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence 78999999887 89999999999999999999999999999998877655446689999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc--cEEEcCCCC
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV 174 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~--~~~~~p~~~ 174 (217)
+|++.+..+|+.|..|..|.++.|.+.......+...+ |+|+||++++.+ .++++|+++
T Consensus 80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~-------------------g~~~~y~~v~~~~~~~~~lP~~~ 140 (351)
T cd08285 80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD-------------------GVFAEYFHVNDADANLAPLPDGL 140 (351)
T ss_pred EEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCC-------------------cceeEEEEcchhhCceEECCCCC
Confidence 99998878999999999999999976531100111122 499999999974 899999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++.++..+.|||++ .+..++++|++|||+|+|++|++
T Consensus 141 ~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~ 181 (351)
T cd08285 141 TDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLM 181 (351)
T ss_pred CHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHH
Confidence 999999998899999996 57788999999999988999875
No 35
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.97 E-value=2.6e-29 Score=215.22 Aligned_cols=177 Identities=27% Similarity=0.435 Sum_probs=155.5
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.+++.++++++++.|+++++||+||+.++++|++|+..+.+..+...+|.++|||++|+|+++|+++++|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD 80 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence 68999999855599999999999999999999999999999999888654445688999999999999999999999999
Q ss_pred EEeeec-ccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 97 ~V~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
+|++.+ ...|+.|.+|..|.++.|....+ .|...+| ++++|+.++.+.++++|++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~~~ 138 (333)
T cd08296 81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDDLD 138 (333)
T ss_pred EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCCCC
Confidence 998754 46799999999999999988764 2332233 899999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++++.+++++.|+|+++ +..++.++++|||+|+|++|++
T Consensus 139 ~~~aa~l~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~iG~~ 178 (333)
T cd08296 139 AAEAAPLLCAGVTTFNAL-RNSGAKPGDLVAVQGIGGLGHL 178 (333)
T ss_pred HHHhhhhhhhhHHHHHHH-HhcCCCCCCEEEEECCcHHHHH
Confidence 999999999999999976 4558999999999998999875
No 36
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.96 E-value=4.1e-29 Score=214.34 Aligned_cols=179 Identities=30% Similarity=0.419 Sum_probs=157.7
Q ss_pred eeeEEeccCCCCeEEEEeecCCC-CCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
|||+++.+++. +++.++|.|.| .++||+||+.++++|++|+..+.+.++...+|.++|+|++|+|+++|+++++|++|
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG 79 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence 58999998887 99999999999 89999999999999999999988877656678999999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc--cEEEcCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~--~~~~~p~~ 173 (217)
|+|++.+..+|+.|.+|..+...+|++...+...+...+ |+|++|++++.+ .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~v~~~~~~~~~lP~~ 140 (347)
T cd05278 80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRID-------------------GGQAEYVRVPYADMNLAKIPDG 140 (347)
T ss_pred CEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCC-------------------CeeeEEEEecchhCeEEECCCC
Confidence 999999989999999999999999988654322222223 499999999987 89999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++++++.+++++.|||+++ ...++++|++|||.|+|++|++
T Consensus 141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~ 182 (347)
T cd05278 141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLC 182 (347)
T ss_pred CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHH
Confidence 99999999999999999976 7788999999999887888864
No 37
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.96 E-value=1.2e-28 Score=209.65 Aligned_cols=177 Identities=36% Similarity=0.556 Sum_probs=157.0
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++..++.++.++++|.|.+.++||+||++++++|++|++.+.+.++....|.++|||++|+|+++|++++.|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd 80 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD 80 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence 68999987555599999999999999999999999999999999888765556688999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
+|++.....|+.|++|..+..++|++... .|....| +|++|++++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~ 138 (332)
T cd08259 81 RVILYYYIPCGKCEYCLSGEENLCRNRAE---YGEEVDG-------------------GFAEYVKVPERSLVKLPDNVSD 138 (332)
T ss_pred EEEECCCCCCcCChhhhCCCcccCCCccc---cccccCC-------------------eeeeEEEechhheEECCCCCCH
Confidence 99999989999999999999999987522 3333334 9999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
++++.+++++.|||+++.. .++.++++|||+|+ |++|++
T Consensus 139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~ 178 (332)
T cd08259 139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIH 178 (332)
T ss_pred HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHH
Confidence 9999999999999997655 88999999999998 899875
No 38
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.96 E-value=1e-28 Score=210.96 Aligned_cols=177 Identities=31% Similarity=0.434 Sum_probs=158.6
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.++++++++++++.|.++++||+||++++++|++|++...+.++...+|.++|||++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD 80 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence 68999999988799999999999999999999999999999998888765556788999999999999999998899999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
+|++....+|+.|++|..+..+.|..... .|...+| +|++|+.++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~ 138 (334)
T PRK13771 81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNVSD 138 (334)
T ss_pred EEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCCCH
Confidence 99998888999999999999999988654 3333344 9999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
.+++.+.+++.++|+++.+. +++++++|||+|+ |.+|++
T Consensus 139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~ 178 (334)
T PRK13771 139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIH 178 (334)
T ss_pred HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHH
Confidence 99999999999999976554 8999999999998 888875
No 39
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.96 E-value=8.6e-29 Score=211.93 Aligned_cols=178 Identities=34% Similarity=0.508 Sum_probs=158.3
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC---CCCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~---~~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++.++++++++.+.+.|+++++||+||+.++++|++|+..+.+.+. ...+|.++|+|++|+|+++|+++.+|+
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 68999998866699999999999999999999999999999998877654 245678999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|++.+...|+.|..|..|..++|++..+ .|...+| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence 99999999888999999999999999998876 3433444 9999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHh-cCCCCCCEEEEEcCChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~-~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++++++.+++.+.|||+++.+. ..+.++++|||+|+|++|++
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~ 182 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHI 182 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHH
Confidence 99999999999999999977665 46889999999999779875
No 40
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.96 E-value=2.5e-28 Score=211.59 Aligned_cols=197 Identities=43% Similarity=0.660 Sum_probs=159.9
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.+++.++++++++.|+++++||+||++++++|+.|+..+.+.++ ..+|.++|+|++|+|+++|++++.|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD 79 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence 68999999877799999999999999999999999999999998887654 35678999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
+|+..+..+|+.|.+|+++..++|++.-.. -.+...++..++. ..|...+.....|+|++|+.++.+.++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 157 (363)
T cd08279 80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQLPDGTRRFT-ADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL 157 (363)
T ss_pred EEEECCCCCCCCChhhcCCCcccCcccccc-cccccCCCccccc-ccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence 999999899999999999999999865210 0111111100000 00111111122359999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++++++.|||.++++..++.+|++|||+|+|++|++
T Consensus 158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a 197 (363)
T cd08279 158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLN 197 (363)
T ss_pred HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHH
Confidence 9999999999999998888889999999999977888865
No 41
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.96 E-value=1.7e-28 Score=208.84 Aligned_cols=176 Identities=28% Similarity=0.364 Sum_probs=152.4
Q ss_pred eeeEEeccCC-CCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
||++++..++ ..+++++.+.|+++++||+||+.++++|++|+..+.+. ....+|.++|||++|+|+++|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG 79 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence 6888887665 33888888888899999999999999999999887642 222457799999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
|+|++.+...|+.|++|..|+.++|++..+ .+...+| +|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~ 137 (325)
T cd08264 80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDSIS 137 (325)
T ss_pred CEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCCCC
Confidence 999999888999999999999999987653 2322333 899999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++.+.+++.+||+++. ..++++|++|+|+|+ |++|++
T Consensus 138 ~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~ 178 (325)
T cd08264 138 DELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIF 178 (325)
T ss_pred HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHH
Confidence 9999999989999999764 488999999999998 999975
No 42
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.96 E-value=6.3e-28 Score=207.25 Aligned_cols=178 Identities=34% Similarity=0.500 Sum_probs=158.3
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.+++.++++++.+.|.+.++||+||+.++++|++|+..+.+.++...+|.++|+|++|+|+++|+++..|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd 80 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD 80 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence 79999988877799999999999999999999999999999999888765556688999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc--cEEEcCCCC
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV 174 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~--~~~~~p~~~ 174 (217)
+|++.+...|+.|.+|..|..++|++... .+...+| +|++|+.++.. .++++|+++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~iP~~~ 138 (345)
T cd08260 81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHPG-------------------SFAEYVAVPRADVNLVRLPDDV 138 (345)
T ss_pred EEEECCCCCCCCCccccCcCcccCCCCcc---cccCCCC-------------------cceeEEEcccccCceEECCCCC
Confidence 99987778899999999999999998753 2322234 99999999974 899999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++.+.+++.|||+++.+..++.++++|||+|+|++|++
T Consensus 139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~ 180 (345)
T cd08260 139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLS 180 (345)
T ss_pred CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHH
Confidence 999999998899999998777888999999999998888865
No 43
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.96 E-value=4e-28 Score=209.07 Aligned_cols=175 Identities=27% Similarity=0.461 Sum_probs=151.6
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC---------CCCCeeeeecceEEEEEeCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---------AVFPRILGHEAIGVVESVGE 87 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~---------~~~p~ilG~e~~G~Vv~vG~ 87 (217)
|||++++++++ +++++++.|++.++||+||++++++|++|+..+.|.... ..+|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 68999998887 999999999999999999999999999999988775311 14677899999999999999
Q ss_pred CCC--CCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCC--CCCCCcccccCCCceeeeccccceeeeeEEec
Q 027867 88 NVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM--PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD 163 (217)
Q Consensus 88 ~v~--~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~--~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~ 163 (217)
+++ +|++||+|++.+...|+.|..|..+..++|+.... .|. ..+ |+|++|+.++
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~-------------------g~~~~~~~~~ 137 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQNNVN-------------------GGMAEYMRFP 137 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeeccCCC-------------------CcceeeEEcc
Confidence 999 89999999999999999999999999999975432 222 122 4999999999
Q ss_pred cc-cEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 164 IA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 164 ~~-~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
.+ .++++|+++++++++.+ .++.|+|.++ +..++++|++|||.|+|++|++
T Consensus 138 ~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~ 189 (350)
T cd08256 138 KEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLG 189 (350)
T ss_pred cccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 87 57899999999999888 7899999976 7889999999999777999865
No 44
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.96 E-value=8e-28 Score=205.78 Aligned_cols=176 Identities=26% Similarity=0.411 Sum_probs=153.9
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.++++...+++.|.|.++++||+||++++++|++|+..+.+.++. ..|.++|||++|+|+++|++++.|++||
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD 79 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence 789999988873348999999999999999999999999999988776543 3467899999999999999999999999
Q ss_pred EEeeec-ccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 97 ~V~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
+|++.+ ..+|+.|..|..+..++|.+... .|...+| +|++|+.++.+.++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~ 137 (338)
T PRK09422 80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGLD 137 (338)
T ss_pred EEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCCC
Confidence 998754 56899999999999999987653 3333444 999999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++++.+++.+.|||+++ +.+++++|++|||+|+|++|++
T Consensus 138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~ 177 (338)
T PRK09422 138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNL 177 (338)
T ss_pred HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHH
Confidence 999999999999999976 7788999999999998888865
No 45
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.96 E-value=9e-28 Score=206.28 Aligned_cols=178 Identities=28% Similarity=0.402 Sum_probs=156.4
Q ss_pred eeeEEeccCCCCeEEEEeecCCC-CCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
|||+++.+++. +++++++.|+| .++||+||++++++|++|+.++.|.++...+|.++|||++|+|+++|++++++++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G 79 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG 79 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence 68999988887 99999999986 79999999999999999999998876554567899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc--cEEEcCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~--~~~~~p~~ 173 (217)
|+|++.+...|+.|.+|..+..+.|....+. .|...+ |+|++|+.++.+ .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~~~lp~~ 138 (345)
T cd08286 80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLID-------------------GTQAEYVRIPHADNSLYKLPEG 138 (345)
T ss_pred CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccC-------------------CeeeeEEEcccccCceEECCCC
Confidence 9999998889999999999999999876442 122222 399999999987 89999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++..+++.+.+.+.|||.++....++.+|++|||+|+|++|.+
T Consensus 139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~ 181 (345)
T cd08286 139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLA 181 (345)
T ss_pred CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHH
Confidence 9999999998899999987777888999999999988988865
No 46
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.96 E-value=6.9e-28 Score=212.31 Aligned_cols=169 Identities=21% Similarity=0.262 Sum_probs=135.3
Q ss_pred ceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhh-hcCCCC------CCCCeeeeecceEEEEEeCC
Q 027867 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP------AVFPRILGHEAIGVVESVGE 87 (217)
Q Consensus 15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~-~g~~~~------~~~p~ilG~e~~G~Vv~vG~ 87 (217)
|+|||++++++++ ++++++|.|+|+++||+|||+++|||++|++.+ .+.... ..+|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 4589999999987 999999999999999999999999999999976 453211 24688999999999999999
Q ss_pred CCC-CCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc-
Q 027867 88 NVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA- 165 (217)
Q Consensus 88 ~v~-~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~- 165 (217)
+|+ +|++||+|++.+...|+.|..|. + .|...+| +|+||++++.+
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~~~G-------------------~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYTYPG-------------------GLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------ccccCCC-------------------cceEEEEecHHh
Confidence 998 69999999998888898888772 1 1222334 99999999987
Q ss_pred ---cEEEcCCCCCccccccc-cch-hhhHHHHH--------HHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 166 ---HVVKVDPTVPPNRACLL-SCG-VSTGVGAA--------WRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 166 ---~~~~~p~~~~~~~aa~l-~~~-~~ta~~a~--------~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
.++++|+++++++++++ +.+ ..+++.++ .+.+++++|++|+|+|+ |++|+++
T Consensus 127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~a 192 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMA 192 (410)
T ss_pred ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHH
Confidence 68999999999998865 211 12234332 24578899999999986 9999763
No 47
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.95 E-value=7.4e-28 Score=207.31 Aligned_cols=178 Identities=29% Similarity=0.463 Sum_probs=155.1
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC------------CCCCCeeeeecceEEEEE
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF------------PAVFPRILGHEAIGVVES 84 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~------------~~~~p~ilG~e~~G~Vv~ 84 (217)
|||+++..++.+++++++|.|++.++||+||+.++++|++|++.+.+.++ ...+|.++|||++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 78999988887799999999999999999999999999999998877543 123567899999999999
Q ss_pred eCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEecc
Q 027867 85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI 164 (217)
Q Consensus 85 vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~ 164 (217)
+|++++++++||+|++.+...|+.|..|.++++++|....+. |.... |++++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------g~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRAL---GIFQD-------------------GGYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCce---eeecc-------------------CcceeeEEecH
Confidence 999999999999999999999999999999999999775432 21122 38999999999
Q ss_pred ccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 165 ~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+.++++|+++++.+++.+.+.+.|||+++......+++++|||+|+|++|++
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~ 190 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLM 190 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHH
Confidence 9999999999999999999999999997766666678999999988998875
No 48
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.95 E-value=1.6e-27 Score=207.48 Aligned_cols=185 Identities=26% Similarity=0.389 Sum_probs=152.3
Q ss_pred eeeEEeccCCCCeEEEEeecCCC-CCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
||++++.+++. ++++++|+|.+ +++||+||++++++|++|++.+.+.++ ..+|.++|||++|+|+++|++++.+++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (375)
T cd08282 1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG 78 (375)
T ss_pred CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence 58899988875 99999999996 799999999999999999999888765 3568999999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc--cEEEcCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~--~~~~~p~~ 173 (217)
|+|++.+..+|+.|..|..+..++|.+..... .+ ...|... .. ...|+|++|++++.+ .++++|++
T Consensus 79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~-~~-~~~~~~~--------~~--~~~g~~a~y~~v~~~~~~~~~lP~~ 146 (375)
T cd08282 79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGR-AG-GAYGYVD--------MG--PYGGGQAEYLRVPYADFNLLKLPDR 146 (375)
T ss_pred CEEEEeCCCCCCCCHHHHCcCcccCCCCCccc-cc-ccccccc--------cC--CCCCeeeeEEEeecccCcEEECCCC
Confidence 99999999999999999999999998643210 00 0000000 00 001499999999975 89999999
Q ss_pred CCcc---ccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 174 VPPN---RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~---~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++ +++.+..++.|||+++ +.+++.+|++|||.|+|++|++
T Consensus 147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~ 191 (375)
T cd08282 147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLM 191 (375)
T ss_pred CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 9998 5677778899999976 8889999999999988998875
No 49
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.95 E-value=1.1e-27 Score=209.62 Aligned_cols=182 Identities=18% Similarity=0.149 Sum_probs=153.6
Q ss_pred CCceeeeEEecc--CCC---CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC----------CCCCCeeeeec
Q 027867 13 KPIQCRAAIATA--PGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFPRILGHE 77 (217)
Q Consensus 13 ~~~~~~a~~~~~--~~~---~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~----------~~~~p~ilG~e 77 (217)
+|.+|||+++.. .+. .+++++++.|.++++||+||+++++||++|++.+.+... ....+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 788899998853 222 278899999999999999999999999999988766411 01123589999
Q ss_pred ceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCcccccCCCceeeecccccee
Q 027867 78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSF 156 (217)
Q Consensus 78 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~ 156 (217)
++|+|+++|++++.|++||+|++.+...|+.|..|..+..++|+...+ .|.. .+ |+|
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~-------------------g~~ 146 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNY-------------------GSF 146 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCC-------------------Ccc
Confidence 999999999999999999999999888999999999999999986543 2221 22 399
Q ss_pred eeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHh--cCCCCCCEEEEEcC-ChhccC
Q 027867 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 157 a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~--~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
++|++++...++++|+++++++++.+.+++.|||+++... +++++|++|||+|+ |++|++
T Consensus 147 a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a 209 (393)
T cd08246 147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSM 209 (393)
T ss_pred eeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHH
Confidence 9999999999999999999999998989999999976554 67899999999998 999975
No 50
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.95 E-value=2.9e-28 Score=195.81 Aligned_cols=157 Identities=28% Similarity=0.309 Sum_probs=143.5
Q ss_pred CCCCceeeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCC
Q 027867 11 AGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88 (217)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~ 88 (217)
...|+..|.+++++.|.. +++++.|.|+|.++|++||..|+|+|..|...+.|.+...+.|+++|-|++|+|+++|+.
T Consensus 3 ~~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~g 82 (336)
T KOG1197|consen 3 AASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEG 82 (336)
T ss_pred CCCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCC
Confidence 356788999999998875 899999999999999999999999999999999999977789999999999999999999
Q ss_pred CCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEE
Q 027867 89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV 168 (217)
Q Consensus 89 v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~ 168 (217)
|+++++||||.... .. |.|+|+..+|...++
T Consensus 83 vtdrkvGDrVayl~------------------------------~~-------------------g~yaee~~vP~~kv~ 113 (336)
T KOG1197|consen 83 VTDRKVGDRVAYLN------------------------------PF-------------------GAYAEEVTVPSVKVF 113 (336)
T ss_pred ccccccccEEEEec------------------------------cc-------------------hhhheeccccceeec
Confidence 99999999997431 11 399999999999999
Q ss_pred EcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 169 ~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
++|+.++++.||++.+...|||.-+++..++++|++|||+.| |++|++
T Consensus 114 ~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGll 162 (336)
T KOG1197|consen 114 KVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLL 162 (336)
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHH
Confidence 999999999999988899999998888899999999999977 999975
No 51
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.95 E-value=1.1e-27 Score=203.52 Aligned_cols=156 Identities=24% Similarity=0.368 Sum_probs=126.0
Q ss_pred eeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCC-hhhhhhhhcCCCC---CCCCeeeeecceEEEEEeCCCCCC
Q 027867 16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLC-HSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDG 91 (217)
Q Consensus 16 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~-~~D~~~~~g~~~~---~~~p~ilG~e~~G~Vv~vG~~v~~ 91 (217)
++||+++.+++. +++++++.|+|+++|||||+++++|| ++|++.+.|.++. ..+|.++|||++|+|+++|+++ +
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 478999998887 99999999999999999999999996 7999988887643 3579999999999999999998 6
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcC
Q 027867 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (217)
Q Consensus 92 ~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p 171 (217)
|++||+|++. |..|..|..+ .+ |+|+||++++.+.++++|
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~~-----------------~~-------------------G~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVRG-----------------LF-------------------GGASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEe----Cccccccccc-----------------cC-------------------CcccceEEcCHHHceeCC
Confidence 9999999873 2223222110 12 399999999999999999
Q ss_pred CCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 172 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
++++++. +++. ...|||+++.+ .. .++++|||+|+|++|+++
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~~-~~-~~~~~vlV~G~G~vG~~a 160 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVAG-AE-VKVLPDLIVGHGTLGRLL 160 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHHh-cc-cCCCcEEEECCCHHHHHH
Confidence 9999764 5454 57899996643 33 468999999999999764
No 52
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.95 E-value=3.2e-27 Score=201.39 Aligned_cols=177 Identities=30% Similarity=0.492 Sum_probs=155.9
Q ss_pred eeeEEeccCCC----CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCC
Q 027867 17 CRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV 92 (217)
Q Consensus 17 ~~a~~~~~~~~----~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~ 92 (217)
|||+++.+.+. ++++.+.+.|.+.++||+||+.++++|++|+..+.|.++...+|.++|||++|+|+++|+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 68899988873 48888888888999999999999999999999988876555568899999999999999999999
Q ss_pred CCCCEEeeecc-cCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcC
Q 027867 93 VEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (217)
Q Consensus 93 ~vGd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p 171 (217)
++||+|++.+. ..|+.|..|..+.+++|+...+ .|...+| +|++|+.++.+.++++|
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp 138 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPIP 138 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEECC
Confidence 99999987654 6789999999999999988765 3333334 89999999999999999
Q ss_pred CCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 172 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++++.+++.+.+++.|||+++ +.++++++++|||+|+|++|++
T Consensus 139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~ 182 (329)
T cd08298 139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHL 182 (329)
T ss_pred CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHH
Confidence 9999999999999999999976 8899999999999988999875
No 53
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.95 E-value=3.1e-27 Score=200.88 Aligned_cols=178 Identities=25% Similarity=0.362 Sum_probs=153.6
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++...+.+ +++.+.+.|.+.+++|+||++++++|++|+.++.|..+. ..+|.++|||++|+|+.+|++++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 688988844332 788888888889999999999999999999988876532 35578999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|++.+...|+.|.+|..+.+++|+...+ .|....| ++++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~~ 138 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPDN 138 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCCC
Confidence 99999999999999999999999999986432 2332333 8999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++.+++++.++|.++.+..++.++++|||+|+ +.+|++
T Consensus 139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~ 182 (342)
T cd08266 139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSA 182 (342)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHH
Confidence 9999999998899999998778889999999999998 688864
No 54
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.95 E-value=4.1e-27 Score=206.52 Aligned_cols=184 Identities=22% Similarity=0.206 Sum_probs=153.3
Q ss_pred CCCceeeeEEecc--CCCC---eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC----------CCCCC-eeee
Q 027867 12 GKPIQCRAAIATA--PGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFP-RILG 75 (217)
Q Consensus 12 ~~~~~~~a~~~~~--~~~~---l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~----------~~~~p-~ilG 75 (217)
-+|.+|||+++.. .+++ +++.+++.|.++++||+||++++++|++|.+...+... ....| .++|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 82 (398)
T TIGR01751 3 VVPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIG 82 (398)
T ss_pred ccchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecc
Confidence 3677899999954 4543 89999999999999999999999999999876655321 11223 3899
Q ss_pred ecceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccce
Q 027867 76 HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSS 155 (217)
Q Consensus 76 ~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~ 155 (217)
||++|+|+++|++++.|++||+|++.....|+.|++|+.+...+|+.... .|.. .+.|+
T Consensus 83 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~------------------~~~g~ 141 (398)
T TIGR01751 83 SDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYE------------------TNFGS 141 (398)
T ss_pred cceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---cccc------------------CCCcc
Confidence 99999999999999999999999999999999999999999999976542 1111 01249
Q ss_pred eeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHH--hcCCCCCCEEEEEcC-ChhccC
Q 027867 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 156 ~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~--~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
|+||++++.+.++++|+++++++++.+.+++.|||.++.. ..++.+|++|||+|+ |++|++
T Consensus 142 ~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ 205 (398)
T TIGR01751 142 FAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSY 205 (398)
T ss_pred ceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHH
Confidence 9999999999999999999999999988999999997654 477899999999998 999975
No 55
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.95 E-value=4.7e-27 Score=201.51 Aligned_cols=183 Identities=23% Similarity=0.347 Sum_probs=153.0
Q ss_pred eeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCCE
Q 027867 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV 97 (217)
Q Consensus 18 ~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~ 97 (217)
|+++.+..+..|++++++.|++.++||+||++++++|++|++.+.+.+....+|.++|||++|+|+++|+++++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR 80 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence 46777777766999999999999999999999999999999998887655567889999999999999999999999999
Q ss_pred Ee-eecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 98 VI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 98 V~-~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
|+ ......|+.|++|..+..++|+...+.. .|....+ ....|+|+||+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~~ 145 (337)
T cd05283 81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLDS 145 (337)
T ss_pred EEEecCCCCCCCCccccCCchhcCcchhhcc-cccccCC--------------CcCCCcceeEEEechhheEECCCCCCH
Confidence 98 4445689999999999999998765421 1110000 111249999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++.+.+.+.|||.++ +...+++|++|+|.|.|++|++
T Consensus 146 ~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~ 184 (337)
T cd05283 146 AAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHL 184 (337)
T ss_pred HHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHH
Confidence 99999999999999965 5567899999999888988865
No 56
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.95 E-value=4.8e-27 Score=201.42 Aligned_cols=179 Identities=27% Similarity=0.425 Sum_probs=151.9
Q ss_pred eeeEEeccCCCCeEEEEeecCCCC-CCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~-~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
|||+++.+++. ++++++++|.|. ++||+||+.++++|+.|+....+.++ ..+|.++|+|++|+|+++|++++.+++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (344)
T cd08284 1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG 78 (344)
T ss_pred CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence 67999988765 999999999985 99999999999999999988877654 3457899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc--cEEEcCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~--~~~~~p~~ 173 (217)
|+|++.+..+|+.|.+|..+..+.|++.......+.. ...|++++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~v~~~~~~~~~~p~~ 140 (344)
T cd08284 79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP------------------NLDGAQAEYVRVPFADGTLLKLPDG 140 (344)
T ss_pred CEEEEcccCCCCCChHHhCcCcccCCCCccccccccC------------------CCCCceeEEEEcccccCceEECCCC
Confidence 9999988889999999999999999765321000000 012489999999865 99999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++++++.+++++.|||+++ ...++.+|++|||+|+|++|++
T Consensus 141 l~~~~a~~l~~~~~ta~~~~-~~~~~~~~~~vlI~g~g~vg~~ 182 (344)
T cd08284 141 LSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLC 182 (344)
T ss_pred CCHHHhhhhcCchHHHHhhh-HhcCCccCCEEEEECCcHHHHH
Confidence 99999999999999999976 4588899999999988998865
No 57
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.95 E-value=6.6e-27 Score=202.91 Aligned_cols=198 Identities=31% Similarity=0.494 Sum_probs=159.6
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCC---CC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG---VV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~---~~ 93 (217)
|||+++.+++.++++++++.|.++++||+||+.++++|++|+.++.+.++. .+|.++|||++|+|+++|+++++ |+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~ 79 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS 79 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence 689999988766899999999999999999999999999999988876654 66789999999999999999988 99
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCC-CCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~ 172 (217)
+||+|++.+..+|+.|..|..+..++|++..++...+ ....|...+....+.+++- ...|+|++|+.++.+.++++|+
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~P~ 158 (367)
T cd08263 80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYM-YSMGGLAEYAVVPATALAPLPE 158 (367)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCcccc-ccCCcceeEEEechhhEEECCC
Confidence 9999999888899999999999999999865321111 0011100000000000000 1125999999999999999999
Q ss_pred CCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++++.+++++.|||.++.+...+.++++|||+|+|++|++
T Consensus 159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~ 202 (367)
T cd08263 159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSS 202 (367)
T ss_pred CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHH
Confidence 99999999999999999998877778899999999987988875
No 58
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.95 E-value=8e-27 Score=202.16 Aligned_cols=179 Identities=30% Similarity=0.451 Sum_probs=146.9
Q ss_pred CCceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC---CCCCCeeeeecceEEEEEeCCCC
Q 027867 13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENV 89 (217)
Q Consensus 13 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~---~~~~p~ilG~e~~G~Vv~vG~~v 89 (217)
.-.+++++++..++. +++++.+.|.+.++||+||++++++|++|++.+.+... ...+|.++|||++|+|+++|+++
T Consensus 14 ~~~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 92 (364)
T PLN02702 14 VEEENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEV 92 (364)
T ss_pred cccccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCC
Confidence 334566666666665 99999999999999999999999999999998876321 12357899999999999999999
Q ss_pred CCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCcccccCCCceeeeccccceeeeeEEeccccEE
Q 027867 90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV 168 (217)
Q Consensus 90 ~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~ 168 (217)
++|++||+|++.+..+|+.|+.|..|..++|++..+ .+. ..+ |+|++|+.++.+.++
T Consensus 93 ~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~-------------------g~~~~y~~v~~~~~~ 150 (364)
T PLN02702 93 KHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH-------------------GSLANQVVHPADLCF 150 (364)
T ss_pred CCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC-------------------CcccceEEcchHHeE
Confidence 999999999999999999999999999999986432 111 113 399999999999999
Q ss_pred EcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 169 ~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++|++++++++++.. ++.++|.++ +..++.+|++|||+|+|++|++
T Consensus 151 ~~P~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~ 196 (364)
T PLN02702 151 KLPENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLV 196 (364)
T ss_pred ECCCCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 999999999887532 455577755 7788999999999988988865
No 59
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.95 E-value=6.6e-27 Score=198.77 Aligned_cols=169 Identities=24% Similarity=0.427 Sum_probs=145.9
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.++++ +++++++.|+++++||+||++++++|++|+.++.+.++ .|.++|||++|+|+++|++ +++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~ 73 (319)
T cd08242 1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK 73 (319)
T ss_pred CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence 68999988765 99999999999999999999999999999998887653 5789999999999999998 67999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
+|...+..+|+.|++|..+.++.|..... .+. ..+| +|++|++++.+.++++|++++
T Consensus 74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~ 131 (319)
T cd08242 74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------------AFAEYLTLPLENLHVVPDLVP 131 (319)
T ss_pred eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------------ceEEEEEechHHeEECcCCCC
Confidence 99999999999999999999998877653 222 1233 999999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
.++++.+ ....++|. +.+..++++|++|||+|+|.+|++
T Consensus 132 ~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~ 170 (319)
T cd08242 132 DEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLL 170 (319)
T ss_pred HHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHH
Confidence 9888764 35556666 568889999999999988999875
No 60
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.95 E-value=9.1e-27 Score=198.66 Aligned_cols=178 Identities=33% Similarity=0.482 Sum_probs=157.2
Q ss_pred eeeEEeccCCCC-eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC-CCCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 17 CRAAIATAPGEP-LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 17 ~~a~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~-~~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
||++++..++++ +.+.+.+.|.+.++||+||+.++++|+.|...+.+.+. ...+|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 689999999887 67788889999999999999999999999999888764 3456789999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
||+|+..+..+|+.|++|..++.++|..... .|...+| +|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGIDG-------------------GFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccCC-------------------cceeeEEechHHeEECCCCC
Confidence 9999999999999999999999999966543 2333334 99999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++.+..++.|||.++.+..+++++++|||.|+|.+|++
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~ 180 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLN 180 (338)
T ss_pred CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHH
Confidence 999999998999999998877788999999999887888865
No 61
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.95 E-value=8.7e-27 Score=198.77 Aligned_cols=176 Identities=31% Similarity=0.455 Sum_probs=153.3
Q ss_pred eeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCCE
Q 027867 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV 97 (217)
Q Consensus 18 ~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~ 97 (217)
||+++.+.+..+++++.+.|.+.++||+||+.++++|++|+..+.+.+....+|.++|||++|+|+++|+++++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~ 80 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR 80 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence 68888888555999999999999999999999999999999998877644456789999999999999999999999999
Q ss_pred Eeeecc-cCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 98 VIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 98 V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
|++.+. .+|+.|++|.++..++|++..+ .+....| +|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~~ 138 (330)
T cd08245 81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGLPL 138 (330)
T ss_pred EEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCCCH
Confidence 987654 5799999999999999998654 2222233 8999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++.+.+.+.|||.++. ..+++++++|||+|+|++|++
T Consensus 139 ~~~~~l~~~~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~ 177 (330)
T cd08245 139 AQAAPLLCAGITVYSALR-DAGPRPGERVAVLGIGGLGHL 177 (330)
T ss_pred HHhhhhhhhHHHHHHHHH-hhCCCCCCEEEEECCCHHHHH
Confidence 999988889999999764 478999999999988888865
No 62
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.94 E-value=2e-26 Score=197.32 Aligned_cols=174 Identities=34% Similarity=0.574 Sum_probs=150.1
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++..++. +++.+++.|.++++||+|||.++++|+.|+.+..+.++...+|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD 79 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence 68999988876 99999999999999999999999999999998887765545678999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
+|+..+..+|+.|..|+.+..+.|...+. .+.... |+|++|+.++++ ++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~-~~~~p~~~~~ 136 (337)
T cd08261 80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRD-------------------GGFAEYIVVPAD-ALLVPEGLSL 136 (337)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCC-------------------CcceeEEEechh-eEECCCCCCH
Confidence 99998888999999999999999954322 111112 389999999999 9999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++ ..+.+++.++ +..++.+|++|||+|+|.+|.+
T Consensus 137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~ 174 (337)
T cd08261 137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLG 174 (337)
T ss_pred HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 998877 4778888865 7789999999999987888865
No 63
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.94 E-value=2e-26 Score=197.55 Aligned_cols=175 Identities=31% Similarity=0.473 Sum_probs=152.0
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.+++. +.+++.+.|++.+++|+||++++++|+.|+.++.+.+.....|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd 79 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD 79 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence 58999988876 99999999999999999999999999999998887654334577999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEecccc-----EEEcC
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-----VVKVD 171 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~-----~~~~p 171 (217)
+|++.+...|+.|+.|..+..++|+...+ .|...+| +|++|++++.+. ++++|
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~~~~~~lP 137 (343)
T cd08235 80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYDG-------------------GFAEYVRVPAWAVKRGGVLKLP 137 (343)
T ss_pred EEEEccCCCCCCChHHHCcCcccCCCcce---eccCCCC-------------------cceeeEEecccccccccEEECC
Confidence 99999888999999999999999987653 2222333 999999999988 99999
Q ss_pred CCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 172 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++++.+++.+ .++.+||+++ +..++++|++|||+|+|.+|++
T Consensus 138 ~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~VlV~g~g~vg~~ 180 (343)
T cd08235 138 DNVSFEEAALV-EPLACCINAQ-RKAGIKPGDTVLVIGAGPIGLL 180 (343)
T ss_pred CCCCHHHHHhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 99999998876 6889999976 4558999999999987888865
No 64
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.94 E-value=1.5e-26 Score=198.48 Aligned_cols=175 Identities=27% Similarity=0.445 Sum_probs=146.6
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCC---CCCCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~---~~~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
||++++..+++.+++.++|.|.|+++||+||++++++|++|+.++.+.. ....+|.++|||++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 5899998888779999999999999999999999999999998766532 1234678999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|+..+..+|..|+.|..+.+++|+..++ .+...+| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------------AFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------------cceeeEEechHHeEECcCC
Confidence 99999999888999999999999999987543 2322334 9999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++++++.+ ..+.+++.+++. ...+|++|||.|+|++|++
T Consensus 139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~ 178 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIM 178 (341)
T ss_pred CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHH
Confidence 999888755 466666664543 3468999999988988865
No 65
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.94 E-value=1.7e-26 Score=201.74 Aligned_cols=178 Identities=27% Similarity=0.443 Sum_probs=146.5
Q ss_pred ceeeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCC------C-CCCCCeeeeecceEEEEEeCC
Q 027867 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD------F-PAVFPRILGHEAIGVVESVGE 87 (217)
Q Consensus 15 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~------~-~~~~p~ilG~e~~G~Vv~vG~ 87 (217)
..+.+.++... + +++++++.|+++++||+||++++++|++|++.+.+.. + ...+|.++|||++|+|+++|+
T Consensus 27 ~~~~~~~~~~~-~-~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 104 (384)
T cd08265 27 TNLGSKVWRYP-E-LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGK 104 (384)
T ss_pred ccceeEEEeCC-C-EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECC
Confidence 34555565543 4 9999999999999999999999999999998876321 1 134678999999999999999
Q ss_pred CCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccE
Q 027867 88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV 167 (217)
Q Consensus 88 ~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~ 167 (217)
++++|++||+|++.+..+|+.|+.|..+..++|..+.. .|...+| +|++|+.++.+.+
T Consensus 105 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~~ 162 (384)
T cd08265 105 NVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARYA 162 (384)
T ss_pred CCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHHe
Confidence 99999999999999999999999999999999987653 3332334 9999999999999
Q ss_pred EEcCCCC-------CccccccccchhhhHHHHHHHh-cCCCCCCEEEEEcCChhccCC
Q 027867 168 VKVDPTV-------PPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 168 ~~~p~~~-------~~~~aa~l~~~~~ta~~a~~~~-~~~~~g~~VlI~GaG~vG~~a 217 (217)
+++|+.+ +.+ ++.+..++++||+++... .++++|++|||+|+|++|+++
T Consensus 163 ~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~a 219 (384)
T cd08265 163 WEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAA 219 (384)
T ss_pred EECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHH
Confidence 9999863 444 455556889999987665 689999999999889998753
No 66
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.94 E-value=3.3e-26 Score=196.45 Aligned_cols=175 Identities=33% Similarity=0.438 Sum_probs=147.5
Q ss_pred eeeEEeccCCCCeEEEEeecCCC-CCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
||+++++++++ +++++.|.|+| +++||+||+.++++|++|+..+.+.++. ..|.++|||++|+|+++|+++..+++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG 78 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence 68999998887 99999999996 8999999999999999999988876543 457899999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc--cEEEcCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~--~~~~~p~~ 173 (217)
|+|++.....|+.|..|..++.++|.+..+ .+...+| +|++|++++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~~ 136 (345)
T cd08287 79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPGS 136 (345)
T ss_pred CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCCC
Confidence 999986677899999999999999987653 3333444 99999999874 99999999
Q ss_pred CCccccc-----cccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 174 VPPNRAC-----LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~~aa-----~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++.+. .+...+.+||+++ +.+++++|++|||.|+|++|++
T Consensus 137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~ 183 (345)
T cd08287 137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLC 183 (345)
T ss_pred CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 9873222 2235788899865 5788999999999888999875
No 67
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.94 E-value=4.7e-26 Score=195.22 Aligned_cols=164 Identities=26% Similarity=0.368 Sum_probs=139.6
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC-----------CCCCCeeeeecceEEEEEe
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-----------PAVFPRILGHEAIGVVESV 85 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~-----------~~~~p~ilG~e~~G~Vv~v 85 (217)
|||+++.++ . +++++++.|+++++||+||+.++++|+.|++.+.+... ...+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~-~-~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG-P-LVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC-c-eEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 689998776 4 99999999999999999999999999999998877321 2235789999999999999
Q ss_pred CCCCCC-CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEecc
Q 027867 86 GENVDG-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI 164 (217)
Q Consensus 86 G~~v~~-~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~ 164 (217)
|+++++ |++||+|+..+...|+.|+.|..|... ..+ |+|++|+.++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~-------------~~~-------------------g~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP-------------EAP-------------------GGYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc-------------CCC-------------------CceeeeEEech
Confidence 999987 999999999999999999999433110 112 38999999999
Q ss_pred ccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 165 ~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+.++++|+++++++++ +..++++||++ ...+++++|++|||+|+|++|.+
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~ 176 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLA 176 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHH
Confidence 9999999999998877 55688899996 57889999999999988988865
No 68
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.94 E-value=7.2e-26 Score=193.25 Aligned_cols=174 Identities=31% Similarity=0.511 Sum_probs=152.9
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++.++++ +++.+++.|+++++||+||++++++|+.|+....+.++. .+|.++|+|++|+|+++|+++++|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd 78 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD 78 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence 68999988886 999999999999999999999999999999988887653 4778999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
+|++.+...|+.|.+|..+..++|..... .|...+| +|++|++++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~~ 136 (334)
T cd08234 79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNLSF 136 (334)
T ss_pred EEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCCCH
Confidence 99998888899999999999998877642 3222334 9999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
.+++.+ ..+.+++.++ +.+++++|++|||+|+|.+|.+
T Consensus 137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~ 174 (334)
T cd08234 137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLL 174 (334)
T ss_pred HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 998776 6788888876 7889999999999988888865
No 69
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.94 E-value=1e-25 Score=191.09 Aligned_cols=177 Identities=29% Similarity=0.478 Sum_probs=151.0
Q ss_pred eeeEEeccCCC-CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGE-PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
||++++.+.+. .+++++++.|.+.++||+||+.++++|++|++...+.+.....|.++|+|++|+|+++|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 80 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG 80 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence 57888876552 39999999999999999999999999999998888776444567899999999999999999999999
Q ss_pred CEEeeecc-cCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 96 d~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
|+|++.+. ..|+.|++|..+....|+..+. .|...+| +|++|++++.+.++++|+++
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~~ 138 (306)
T cd08258 81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQADG-------------------GFAEYVLVPEESLHELPENL 138 (306)
T ss_pred CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCCC-------------------ceEEEEEcchHHeEECcCCC
Confidence 99998774 6799999999999999976432 2222233 99999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++ +...+.++|+++....+++++++|||.|+|.+|.+
T Consensus 139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~ 179 (306)
T cd08258 139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLL 179 (306)
T ss_pred CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHH
Confidence 999887 56688899998888889999999999877888865
No 70
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.94 E-value=8.1e-26 Score=194.21 Aligned_cols=175 Identities=34% Similarity=0.511 Sum_probs=146.9
Q ss_pred eEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcC-CC--CCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 19 AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DF--PAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 19 a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~-~~--~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
|+++.+++. +++++.+.|.+.++||+||+.++++|+.|++.+.+. .. ...+|.++|+|++|+|+++|+++++|++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 456777765 999999999999999999999999999998876422 11 12457789999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
|+|++.+..+|+.|+.|+.|.+++|++..+.. ....+| +|++|++++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAA--TPPVDG-------------------TLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCccccc--cccCCC-------------------ceeeeEEecHHHcEECcCCCC
Confidence 99999988999999999999999998754311 111223 999999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccCC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~a 217 (217)
+++++.+ .++.+|++++ +.+++++|++|||+|+|++|+++
T Consensus 139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a 178 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLT 178 (343)
T ss_pred HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHH
Confidence 9998877 4788899864 88999999999999888888753
No 71
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.94 E-value=1.1e-25 Score=192.99 Aligned_cols=174 Identities=31% Similarity=0.530 Sum_probs=150.7
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd 96 (217)
|||+++++.+. +.+++.+.|++.++||+||+.++++|+.|+..+.+.+. ...|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd 78 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGD 78 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence 68999998876 99999999999999999999999999999988877652 24578999999999999999999999999
Q ss_pred EEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
+|+..+...|..|++|..+....|..... .|...+| +|++|+.++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lP~~~~~ 136 (343)
T cd08236 79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRDG-------------------AFAEYVSVPARNLIKIPDHVDY 136 (343)
T ss_pred EEEEcCCCCCCCChhHHCcChhhCCCcce---EecccCC-------------------cccceEEechHHeEECcCCCCH
Confidence 99998888899999999999988877532 2222333 9999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++++++ ..+.|||.++ ...+++++++|||+|+|.+|.+
T Consensus 137 ~~aa~~-~~~~ta~~~l-~~~~~~~~~~vlI~g~g~~g~~ 174 (343)
T cd08236 137 EEAAMI-EPAAVALHAV-RLAGITLGDTVVVIGAGTIGLL 174 (343)
T ss_pred HHHHhc-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 998887 5788999976 4778999999999987888765
No 72
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.93 E-value=2.1e-25 Score=191.03 Aligned_cols=175 Identities=31% Similarity=0.481 Sum_probs=143.0
Q ss_pred EeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhh-cCCC--CCCCCeeeeecceEEEEEeCCCCCCCCCCCE
Q 027867 21 IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVDGVVEGDV 97 (217)
Q Consensus 21 ~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~-g~~~--~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~ 97 (217)
++++.++ +++++.+.|.++++||+||+.++++|++|+..+. +.+. ...+|.++|+|++|+|+++|+++++|++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 4566766 9999999999999999999999999999988763 3221 1245789999999999999999999999999
Q ss_pred EeeecccCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCc
Q 027867 98 VIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (217)
Q Consensus 98 V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~ 176 (217)
|++.+...|++|.+|..|+.+.|+...+. +.. .+ ....|+|++|++++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~---------------~~~~g~~~~~v~v~~~~~~~iP~~~~~ 142 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRFL---GSAMRF---------------PHVQGGFREYLVVDASQCVPLPDGLSL 142 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccce---eecccc---------------CCCCCceeeEEEechHHeEECcCCCCH
Confidence 99998889999999999999999876431 100 00 001249999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 177 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++|+. ..+++++|.++.+...+ ++++|||.|+|.+|++
T Consensus 143 ~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~ 180 (339)
T cd08232 143 RRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGAL 180 (339)
T ss_pred HHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHH
Confidence 98876 46888999876555555 8999999888888865
No 73
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.93 E-value=5.1e-25 Score=188.81 Aligned_cols=177 Identities=30% Similarity=0.432 Sum_probs=152.4
Q ss_pred eeeEEeccCC-CCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 17 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
|||+++.+++ ..+++.+++.|.+.++||+||+.++++|++|...+.+.++. ...+.++|||++|+|+++|++++.|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 6899998876 23999999999999999999999999999999888776532 345678999999999999999999999
Q ss_pred CCEEeeec-ccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 95 GDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 95 Gd~V~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
||+|+..+ ...|+.|.+|..++.++|++..+ .|....| ++++|+.++.+.++++|++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPDG 138 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCCC
Confidence 99999776 46799999999999999988754 3333334 8999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++.++..+.|||.++.. .+++++++|||+|+ +.+|++
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~ 181 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHL 181 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHH
Confidence 9999999888899999996544 58999999999998 568865
No 74
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.93 E-value=1.8e-25 Score=182.54 Aligned_cols=157 Identities=24% Similarity=0.371 Sum_probs=143.5
Q ss_pred CCCceeeeEEeccCCCC---eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCC
Q 027867 12 GKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGE 87 (217)
Q Consensus 12 ~~~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~ 87 (217)
.++...|++++.+.++| ++++++++|....++|+||.+|+.|||+|+..+.|.|+. +.+|.+-|+|++|+|+++|+
T Consensus 15 q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs 94 (354)
T KOG0025|consen 15 QMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGS 94 (354)
T ss_pred ccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecC
Confidence 46777899999999988 888999999988888999999999999999999999976 57899999999999999999
Q ss_pred CCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccE
Q 027867 88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV 167 (217)
Q Consensus 88 ~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~ 167 (217)
++++|++||+|+.... +.|+|++|.+.+++.+
T Consensus 95 ~vkgfk~Gd~VIp~~a------------------------------------------------~lGtW~t~~v~~e~~L 126 (354)
T KOG0025|consen 95 NVKGFKPGDWVIPLSA------------------------------------------------NLGTWRTEAVFSESDL 126 (354)
T ss_pred CcCccCCCCeEeecCC------------------------------------------------CCccceeeEeecccce
Confidence 9999999999986532 1249999999999999
Q ss_pred EEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 168 ~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++.++++.||.+.....|||+.+.+..++.+||+|+-.|| ++||++
T Consensus 127 i~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ 176 (354)
T KOG0025|consen 127 IKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQA 176 (354)
T ss_pred EEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHH
Confidence 9999999999999999999999998888899999999999999 899864
No 75
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=3.8e-25 Score=189.98 Aligned_cols=170 Identities=28% Similarity=0.358 Sum_probs=138.9
Q ss_pred eeeEEeccCCCC--eEEEE-eecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC--------------------CCCCCee
Q 027867 17 CRAAIATAPGEP--LVIDE-VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------------------PAVFPRI 73 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~-~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~--------------------~~~~p~i 73 (217)
|||+++..++.+ +.+.+ .+.|.+.+++|+||+.++++|++|++++.|.++ ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 688888776643 55544 577788999999999999999999998876542 2346789
Q ss_pred eeecceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeecccc
Q 027867 74 LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSV 153 (217)
Q Consensus 74 lG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~ 153 (217)
+|||++|+|+++|+++++|++||+|++.+...|+.|+.|.. |. . .|...+
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~~---~---~~~~~~------------------- 130 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----ID---Y---IGSERD------------------- 130 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----cc---c---cCCCCC-------------------
Confidence 99999999999999999999999999988888887766432 11 0 111122
Q ss_pred ceeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 154 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 154 g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
|++++|+.++.+.++++|+++++++++.+.+++.|||.++ +..++++|++|||+|+ |++|+++
T Consensus 131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~ 194 (350)
T cd08274 131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSAL 194 (350)
T ss_pred ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHH
Confidence 3899999999999999999999999999999999999965 7788999999999998 9998753
No 76
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.93 E-value=5.9e-26 Score=164.80 Aligned_cols=108 Identities=35% Similarity=0.541 Sum_probs=94.9
Q ss_pred CCeEEEEEeEeeCChhhhhhhhcC-CCCCCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCC
Q 027867 41 SHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL 119 (217)
Q Consensus 41 ~~eVlV~v~a~~i~~~D~~~~~g~-~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~ 119 (217)
|+|||||+++++||++|++++.+. .....+|.++|||++|+|+++|+++++|++||+|++.+...|+.|..|..+..++
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 689999999999999999999983 4556899999999999999999999999999999999988899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEc
Q 027867 120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170 (217)
Q Consensus 120 c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~ 170 (217)
|++... .|...+| +||||+++++++++++
T Consensus 81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence 977665 5555666 9999999999999885
No 77
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.92 E-value=1.1e-24 Score=187.10 Aligned_cols=175 Identities=30% Similarity=0.473 Sum_probs=144.3
Q ss_pred eeeEEeccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCC---CCCCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~---~~~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++...+..+++.+.+.|.|.++|++||++++++|+.|+.++.+.. .....|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6889998877669999999999999999999999999999988754421 1224567899999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|+..+..+|+.|..|..+..++|+.... .|.... |+|++|++++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVDTD-------------------GCFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccce---EeccCC-------------------CcceEEEEechHHcEECcCC
Confidence 99999998888999999999999999976432 222223 38999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
++.+.+ .+...+.+++.++. ...++|++|||+|+|.+|++
T Consensus 139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~ 178 (341)
T cd05281 139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLM 178 (341)
T ss_pred CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHH
Confidence 998555 44457788887654 45578999999988888865
No 78
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.92 E-value=9.7e-25 Score=185.28 Aligned_cols=151 Identities=28% Similarity=0.327 Sum_probs=131.9
Q ss_pred eeeEEeccCCCC---eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC-CCCCCeeeeecceEEEEEeCCCCCCC
Q 027867 17 CRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGV 92 (217)
Q Consensus 17 ~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~-~~~~p~ilG~e~~G~Vv~vG~~v~~~ 92 (217)
|||+++.+++++ +++++++.|.+.++||+||++++++|++|+..+.|.++ ...+|.++|||++|+|+++|+++++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 689999887653 78899999999999999999999999999999888764 23568899999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCC
Q 027867 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (217)
Q Consensus 93 ~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~ 172 (217)
++||+|++... . |+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~ip~ 111 (324)
T cd08292 81 QVGQRVAVAPV------------------------------H-------------------GTWAEYFVAPADGLVPLPD 111 (324)
T ss_pred CCCCEEEeccC------------------------------C-------------------CcceeEEEEchHHeEECCC
Confidence 99999976421 1 3899999999999999999
Q ss_pred CCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
++++++++.+++...|+|.++ +..++++|++|||+|+ |.+|+++
T Consensus 112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~ 156 (324)
T cd08292 112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLV 156 (324)
T ss_pred CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHH
Confidence 999999999888889999865 6688999999999988 8898753
No 79
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.92 E-value=8.2e-25 Score=186.89 Aligned_cols=153 Identities=24% Similarity=0.244 Sum_probs=131.3
Q ss_pred eeEEeccC---CCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCC
Q 027867 18 RAAIATAP---GEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV 92 (217)
Q Consensus 18 ~a~~~~~~---~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~ 92 (217)
||+++.++ +++ ++++++|.|+|+++||+||++++++|+.|+..+.+..+...+|.++|+|++|+|+++|++++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF 80 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 57788775 433 7888999999999999999999999999998887765544568899999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCC
Q 027867 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (217)
Q Consensus 93 ~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~ 172 (217)
++||+|+.... ...+ |+|++|++++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~ip~ 114 (336)
T TIGR02817 81 KPGDEVWYAGD---------------------------IDRP-------------------GSNAEFHLVDERIVGHKPK 114 (336)
T ss_pred CCCCEEEEcCC---------------------------CCCC-------------------CcccceEEEcHHHcccCCC
Confidence 99999975310 0112 3899999999999999999
Q ss_pred CCCccccccccchhhhHHHHHHHhcCCCC-----CCEEEEEcC-ChhccC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLA 216 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~-----g~~VlI~Ga-G~vG~~ 216 (217)
++++++++.++++..|||.++.+..++.+ |++|||+|+ |++|++
T Consensus 115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~ 164 (336)
T TIGR02817 115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSI 164 (336)
T ss_pred CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHH
Confidence 99999999999999999998878888877 999999997 899875
No 80
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.91 E-value=4e-24 Score=182.39 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=125.5
Q ss_pred eeeEEeccCCC-----CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCC
Q 027867 17 CRAAIATAPGE-----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD 90 (217)
Q Consensus 17 ~~a~~~~~~~~-----~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~ 90 (217)
|||+++.+++. .+++.++|.|.|+++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 68999988874 3788899999999999999999999999999998887643 35688999999999999999998
Q ss_pred C-CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEE
Q 027867 91 G-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK 169 (217)
Q Consensus 91 ~-~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~ 169 (217)
+ |++||+|++... .+ |+|+||++++.+.+++
T Consensus 81 ~~~~vGd~V~~~~~-----------------------------~~-------------------g~~a~~~~v~~~~~~~ 112 (324)
T cd08291 81 AQSLIGKRVAFLAG-----------------------------SY-------------------GTYAEYAVADAQQCLP 112 (324)
T ss_pred ccCCCCCEEEecCC-----------------------------CC-------------------CcchheeeecHHHeEE
Confidence 6 999999975321 01 3899999999999999
Q ss_pred cCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEE-cC-ChhccCC
Q 027867 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GL-GSIGLAV 217 (217)
Q Consensus 170 ~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~-Ga-G~vG~~a 217 (217)
+|+++++++++.+.+...|||. +.+..+. ++++++|+ |+ |++|+++
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a 160 (324)
T cd08291 113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRML 160 (324)
T ss_pred CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHH
Confidence 9999999999988788899986 5555665 56666665 55 9999753
No 81
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.91 E-value=2e-24 Score=181.15 Aligned_cols=128 Identities=23% Similarity=0.352 Sum_probs=106.5
Q ss_pred eeeecceEEEEEeCCCCC------CCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCce
Q 027867 73 ILGHEAIGVVESVGENVD------GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET 146 (217)
Q Consensus 73 ilG~e~~G~Vv~vG~~v~------~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~ 146 (217)
++|||++|+|+++|++|+ +|++||||++.+..+|+.|++|+.|++++|++.... |....+
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~~~~----------- 66 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY---GHEALD----------- 66 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhc---Cccccc-----------
Confidence 589999999999999999 899999999999999999999999999999886542 211100
Q ss_pred eeeccccceeeeeEEeccc-cEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 147 IHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 147 ~~~~~~~g~~a~~~~v~~~-~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
..+...|+|+||++++++ .++++|+++++++++.+.+++.|+|+++ +.....+|++|||+|+|++|++
T Consensus 67 -~~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~ 135 (280)
T TIGR03366 67 -SGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLT 135 (280)
T ss_pred -CCccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHH
Confidence 000012499999999987 7999999999999999988999999965 5566679999999999999975
No 82
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.91 E-value=5.6e-24 Score=182.21 Aligned_cols=152 Identities=26% Similarity=0.349 Sum_probs=133.2
Q ss_pred eeeEEeccCCCC---eEEEEeecCCCCC-CeEEEEEeEeeCChhhhhhhhcCCCCC-C----CCeeeeecceEEEEEeCC
Q 027867 17 CRAAIATAPGEP---LVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKMKDFPA-V----FPRILGHEAIGVVESVGE 87 (217)
Q Consensus 17 ~~a~~~~~~~~~---l~~~~~~~p~~~~-~eVlV~v~a~~i~~~D~~~~~g~~~~~-~----~p~ilG~e~~G~Vv~vG~ 87 (217)
|||+++.+++.+ +++++.|.|.|.+ +||+||+.++++|++|+..+.+..+.. . .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 789999988875 8999999999887 999999999999999999888765421 2 567999999999999999
Q ss_pred CCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccE
Q 027867 88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV 167 (217)
Q Consensus 88 ~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~ 167 (217)
++..|++||+|++... .. |+|++|+.++.+.+
T Consensus 81 ~v~~~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~~~v~~~~~ 112 (341)
T cd08290 81 GVKSLKPGDWVIPLRP-----------------------------GL-------------------GTWRTHAVVPADDL 112 (341)
T ss_pred CCCCCCCCCEEEecCC-----------------------------CC-------------------ccchheEeccHHHe
Confidence 9999999999985421 01 38999999999999
Q ss_pred EEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 168 ~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++|+++++++++.+++.+.|||+++.+..++++|++|||+|+ |++|++
T Consensus 113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~ 162 (341)
T cd08290 113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQA 162 (341)
T ss_pred EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHH
Confidence 9999999999999999999999998777788999999999998 899875
No 83
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.91 E-value=1.8e-23 Score=179.47 Aligned_cols=138 Identities=20% Similarity=0.172 Sum_probs=113.0
Q ss_pred eEEEEeecCCCC-CCeEEEEEeEeeCChhhhhhhh---cCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeeccc
Q 027867 29 LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA 104 (217)
Q Consensus 29 l~~~~~~~p~~~-~~eVlV~v~a~~i~~~D~~~~~---g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~ 104 (217)
+++++++.|+|. ++||||||+|+|||+.|+.... +......+|.++|||++|+|+++|+++++|++||+|+...
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 888999999874 9999999999999999964332 1111135678999999999999999999999999997420
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccc----cc
Q 027867 105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR----AC 180 (217)
Q Consensus 105 ~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~----aa 180 (217)
++|+||++++.+.++++|+++++.+ ++
T Consensus 101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence 1799999999999999999865433 44
Q ss_pred cccchhhhHHHHHHHhcCCCCC--CEEEEEcC-ChhccCC
Q 027867 181 LLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAV 217 (217)
Q Consensus 181 ~l~~~~~ta~~a~~~~~~~~~g--~~VlI~Ga-G~vG~~a 217 (217)
.+..++.|||+++.+..++++| ++|||+|+ |++|+++
T Consensus 132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~a 171 (345)
T cd08293 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLA 171 (345)
T ss_pred hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHH
Confidence 5667899999987778888877 99999998 9999763
No 84
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.91 E-value=1.9e-23 Score=179.25 Aligned_cols=169 Identities=29% Similarity=0.514 Sum_probs=140.6
Q ss_pred ccCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCC---CCCCCCeeeeecceEEEEEeCCCCCCCCCCCEEe
Q 027867 23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI 99 (217)
Q Consensus 23 ~~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~---~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~ 99 (217)
..++.+++++++|.|.|+++||+||+.++++|+.|+.++.+.. ....+|.++|+|++|+|+++|+++++|++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 4566669999999999999999999999999999998765532 1224567899999999999999999999999999
Q ss_pred eecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCcccc
Q 027867 100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA 179 (217)
Q Consensus 100 ~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~a 179 (217)
..+...|+.|..|..+..++|...++ .+.... |+|++|++++.+.++++|++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTD-------------------GCFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcce---EeecCC-------------------CcceeEEEeehHHcEECcCCCChHhh
Confidence 99888999999999999999988754 222223 38999999999999999999998655
Q ss_pred ccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 180 a~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+ +..++.++++++ ...+++|++|||.|+|++|.+
T Consensus 143 ~-~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~ 176 (340)
T TIGR00692 143 T-IQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLM 176 (340)
T ss_pred h-hcchHHHHHHHH--HccCCCCCEEEEECCCHHHHH
Confidence 4 556888888865 345678999999887888865
No 85
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.90 E-value=2.9e-23 Score=176.81 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=133.5
Q ss_pred eeeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 16 ~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
+||++++.+++.+ +++++++.|.++++||+||+.++++|++|+....+.++...+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 4899999887764 88899999999999999999999999999998888765445678999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|+.... . .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~-----------------------------~-------------------~g~~~~~v~v~~~~~~~lp~~ 112 (327)
T PRK10754 81 VGDRVVYAQS-----------------------------A-------------------LGAYSSVHNVPADKAAILPDA 112 (327)
T ss_pred CCCEEEECCC-----------------------------C-------------------CcceeeEEEcCHHHceeCCCC
Confidence 9999974210 0 138999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++.+.+...++|.++.+..++.+|++|+|+|+ |.+|++
T Consensus 113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~ 156 (327)
T PRK10754 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLI 156 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHH
Confidence 9999999888899999997777788999999999986 898865
No 86
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.90 E-value=3.1e-23 Score=178.10 Aligned_cols=154 Identities=22% Similarity=0.260 Sum_probs=131.0
Q ss_pred eeeEEeccCCCC---eEEEEeecCCCC-CCeEEEEEeEeeCChhhhhhhhcCCC---------------CCCCCeeeeec
Q 027867 17 CRAAIATAPGEP---LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDF---------------PAVFPRILGHE 77 (217)
Q Consensus 17 ~~a~~~~~~~~~---l~~~~~~~p~~~-~~eVlV~v~a~~i~~~D~~~~~g~~~---------------~~~~p~ilG~e 77 (217)
|||+++++++++ +++++++.|.|. ++||+||++++++|++|+.++.+... ...+|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 688998888775 888999999994 99999999999999999998876421 23568899999
Q ss_pred ceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceee
Q 027867 78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS 157 (217)
Q Consensus 78 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a 157 (217)
++|+|+++|+++++|++||+|++.... ..+ |+|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~---------------------------~~~-------------------g~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP---------------------------WSQ-------------------GTHA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC---------------------------CCC-------------------ccce
Confidence 999999999999999999999864310 012 3899
Q ss_pred eeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCC----CCCEEEEEcC-ChhccC
Q 027867 158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE----VGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 158 ~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~----~g~~VlI~Ga-G~vG~~ 216 (217)
+|+.++.+.++++|+++++++++.+++.+.|+|.++.+...+. +|++|+|+|+ |++|++
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~ 178 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTF 178 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHH
Confidence 9999999999999999999999999999999999776666665 4999999997 999875
No 87
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.90 E-value=3.1e-23 Score=177.92 Aligned_cols=151 Identities=23% Similarity=0.239 Sum_probs=123.4
Q ss_pred ceeeeEEeccCCC-CeEEEEeec----CCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecc--eEEEEEeC
Q 027867 15 IQCRAAIATAPGE-PLVIDEVIV----DPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEA--IGVVESVG 86 (217)
Q Consensus 15 ~~~~a~~~~~~~~-~l~~~~~~~----p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~--~G~Vv~vG 86 (217)
-.+|+++...+.. .|++++.++ |+|+++||||||+|++||+.|++.+.|.... ...|.++|+++ .|.+..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~ 85 (338)
T cd08295 6 VILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVD 85 (338)
T ss_pred EEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEe
Confidence 3467777544443 299999887 8899999999999999999999988885432 35678889754 45666678
Q ss_pred CCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEecc-c
Q 027867 87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-A 165 (217)
Q Consensus 87 ~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~-~ 165 (217)
+.+++|++||+|+.. |+|+||++++. .
T Consensus 86 ~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~ 113 (338)
T cd08295 86 SGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQ 113 (338)
T ss_pred cCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchh
Confidence 888899999999632 27999999999 7
Q ss_pred cEEEcC-CCCCcc-ccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 166 HVVKVD-PTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 166 ~~~~~p-~~~~~~-~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
.++++| ++++++ +++.+++++.|||+++.+..++++|++|||+|+ |++|+++
T Consensus 114 ~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~a 168 (338)
T cd08295 114 DLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLV 168 (338)
T ss_pred ceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHH
Confidence 999995 678876 788888999999998878889999999999998 9999753
No 88
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.90 E-value=3.2e-23 Score=170.74 Aligned_cols=148 Identities=34% Similarity=0.508 Sum_probs=127.9
Q ss_pred eEEEEEeEeeCChhhhhhhhcCCC-CCCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCC
Q 027867 43 EVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS 121 (217)
Q Consensus 43 eVlV~v~a~~i~~~D~~~~~g~~~-~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~ 121 (217)
||+||++++++|+.|+..+.+... ...+|.++|||++|+|+++|++++.|++||+|+..+...|+.|+.|+. .|.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 689999999999999999888764 345678999999999999999999999999999999999999999997 676
Q ss_pred CCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCC
Q 027867 122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV 201 (217)
Q Consensus 122 ~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~ 201 (217)
.... .+.... |++++|+.++.+.++++|+++++++++.+++++.|||.++.+...+++
T Consensus 77 ~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 134 (271)
T cd05188 77 GGGI---LGEGLD-------------------GGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP 134 (271)
T ss_pred CCCE---eccccC-------------------CcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence 5543 222223 399999999999999999999999999998899999997766666799
Q ss_pred CCEEEEEcCChhccC
Q 027867 202 GSTVVIFGLGSIGLA 216 (217)
Q Consensus 202 g~~VlI~GaG~vG~~ 216 (217)
+++|||+|+|++|++
T Consensus 135 ~~~vli~g~~~~G~~ 149 (271)
T cd05188 135 GDTVLVLGAGGVGLL 149 (271)
T ss_pred CCEEEEECCCHHHHH
Confidence 999999999658764
No 89
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.90 E-value=1.3e-22 Score=172.50 Aligned_cols=172 Identities=26% Similarity=0.303 Sum_probs=139.6
Q ss_pred eeeEEeccCC--CCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~--~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++...+ +.+++++.+.|.++++|++||+.++++|++|+....+.++. ...|.++|||++|+|+++|+.+.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 7899998664 23888888888899999999999999999999988776543 34678999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|++.....|..+. ...|.... ..|...+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~------~~~~~~~~---~~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~ 132 (336)
T cd08276 81 VGDRVVPTFFPNWLDGP------PTAEDEAS---ALGGPID-------------------GVLAEYVVLPEEGLVRAPDH 132 (336)
T ss_pred CCCEEEEeccccccccc------cccccccc---ccccccC-------------------ceeeeEEEecHHHeEECCCC
Confidence 99999987655554333 23342211 1222223 38999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+++.+++.+.+++.+||.++.+..++++|++|+|+|+|++|++
T Consensus 133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~ 175 (336)
T cd08276 133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLF 175 (336)
T ss_pred CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHH
Confidence 9999999999999999998777788999999999987888865
No 90
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.90 E-value=5.7e-23 Score=176.46 Aligned_cols=158 Identities=29% Similarity=0.393 Sum_probs=131.1
Q ss_pred eeeEEeccCC-CCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
|||++++.++ ..+++++++.|+|+++||+||++++++|++|+..+.+.+ ....|.++|||++|+|+.+|++++.|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG 79 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence 6899999884 228899999999999999999999999999998775554 12356799999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
|+|+......|+ +...+ |+|++|++++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~----------------------~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~ 118 (339)
T cd08249 80 DRVAGFVHGGNP----------------------NDPRN-------------------GAFQEYVVADADLTAKIPDNIS 118 (339)
T ss_pred CEEEEEeccccC----------------------CCCCC-------------------CcccceEEechhheEECCCCCC
Confidence 999875432111 01112 3899999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCC----------CCCCEEEEEcC-ChhccC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANV----------EVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~----------~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++.+++.+.|||.++.+..++ +++++|||+|+ |++|++
T Consensus 119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~ 170 (339)
T cd08249 119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTL 170 (339)
T ss_pred HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHH
Confidence 999999999999999977665544 78999999998 888875
No 91
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.89 E-value=1.5e-22 Score=174.83 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=122.8
Q ss_pred CCCCCceeeeEEeccCC--C----CeEEEEe---ecCC-CCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeee--c
Q 027867 10 TAGKPIQCRAAIATAPG--E----PLVIDEV---IVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH--E 77 (217)
Q Consensus 10 ~~~~~~~~~a~~~~~~~--~----~l~~~~~---~~p~-~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~--e 77 (217)
+...+.++|.+++...- . .|++++. +.|. ++++|||||+.|++||+.|+..+.+.......|.++|+ |
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~ 81 (348)
T PLN03154 2 MEGQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIE 81 (348)
T ss_pred CCCccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeE
Confidence 44566667888884432 1 1888774 5553 47999999999999999998754432222245789998 8
Q ss_pred ceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceee
Q 027867 78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS 157 (217)
Q Consensus 78 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a 157 (217)
++|+|..+|+++++|++||+|+.. |+|+
T Consensus 82 ~~G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~a 109 (348)
T PLN03154 82 GFGVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWE 109 (348)
T ss_pred eeEEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcE
Confidence 899999999999999999999632 2799
Q ss_pred eeEEecccc--EEE--cCCCCCcc-ccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 158 EYTVLDIAH--VVK--VDPTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 158 ~~~~v~~~~--~~~--~p~~~~~~-~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
||.+++.+. +++ +|++++++ +++.+++++.|||+++.+..++++|++|||+|+ |++|+++
T Consensus 110 ey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~a 175 (348)
T PLN03154 110 EYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLV 175 (348)
T ss_pred EEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHH
Confidence 999998753 544 48999986 677888999999998878889999999999998 9999753
No 92
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.89 E-value=1.7e-22 Score=171.43 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=128.0
Q ss_pred eeeEEeccCCC--CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++.++++ +++++++|.|.++++||+||+.++++|++|+..+.|.++. ..+|.++|||++|+|+++ +++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 68999998885 5999999999999999999999999999999988886532 345789999999999999 456899
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|++... ..|...+ |+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~------------------------~~g~~~~-------------------g~~~~~~~v~~~~~~~lp~~ 115 (325)
T cd05280 79 EGDEVLVTGY------------------------DLGMNTD-------------------GGFAEYVRVPADWVVPLPEG 115 (325)
T ss_pred CCCEEEEccc------------------------ccCCCCC-------------------ceeEEEEEEchhhEEECCCC
Confidence 9999986421 0122223 38999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhc--CCC-CCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTA--NVE-VGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~--~~~-~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++.+.+.+.|+|.++.... ++. .+++|||+|+ |++|++
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~ 162 (325)
T cd05280 116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSI 162 (325)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHH
Confidence 999999999999999998765433 335 3579999998 999875
No 93
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.89 E-value=1.6e-22 Score=172.34 Aligned_cols=148 Identities=26% Similarity=0.256 Sum_probs=129.1
Q ss_pred eeeEEeccCCC----CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCC
Q 027867 17 CRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG 91 (217)
Q Consensus 17 ~~a~~~~~~~~----~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~ 91 (217)
|||+++.+++. ++++++++.|.+.++||+||+.++++|+.|+....+.+.. ..+|.++|||++|+|+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~ 81 (329)
T cd08250 2 FRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTD 81 (329)
T ss_pred ceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCC
Confidence 89999988765 3899999999999999999999999999999988776542 457889999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcC
Q 027867 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (217)
Q Consensus 92 ~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p 171 (217)
+++||+|++.. . |+|++|+.++.+.++++|
T Consensus 82 ~~~Gd~V~~~~-------------------------------~-------------------g~~~s~~~v~~~~~~~ip 111 (329)
T cd08250 82 FKVGDAVATMS-------------------------------F-------------------GAFAEYQVVPARHAVPVP 111 (329)
T ss_pred CCCCCEEEEec-------------------------------C-------------------cceeEEEEechHHeEECC
Confidence 99999998531 1 389999999999999999
Q ss_pred CCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 172 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+. +.+++.+.+++.|||+++.+..++++|++|||+|+ |.+|++
T Consensus 112 ~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~ 155 (329)
T cd08250 112 EL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQF 155 (329)
T ss_pred CC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHH
Confidence 87 34667788899999998877788999999999997 899865
No 94
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.89 E-value=1.3e-22 Score=172.64 Aligned_cols=152 Identities=25% Similarity=0.318 Sum_probs=131.6
Q ss_pred eeeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCC
Q 027867 16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV 92 (217)
Q Consensus 16 ~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~ 92 (217)
+|||+++.+++.. +++++.+.|.+.++||+||+.++++|+.|+....+.++. ...|.++|||++|+|+++|++++++
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 5899999988753 677788888889999999999999999999888775532 3456789999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCC
Q 027867 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (217)
Q Consensus 93 ~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~ 172 (217)
++||+|+.... + |+|++|++++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip~ 111 (334)
T PTZ00354 81 KEGDRVMALLP------------------------------G-------------------GGYAEYAVAHKGHVMHIPQ 111 (334)
T ss_pred CCCCEEEEecC------------------------------C-------------------CceeeEEEecHHHcEeCCC
Confidence 99999975310 1 3899999999999999999
Q ss_pred CCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
++++++++.+.+++.|||.++.+..++++|++|||+|+ |.+|++
T Consensus 112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~ 156 (334)
T PTZ00354 112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTA 156 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHH
Confidence 99999999998899999998777788999999999997 899875
No 95
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.89 E-value=2.9e-22 Score=169.91 Aligned_cols=152 Identities=24% Similarity=0.305 Sum_probs=128.9
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC---CCCCeeeeecceEEEEEeCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDG 91 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~---~~~p~ilG~e~~G~Vv~vG~~v~~ 91 (217)
|||+++++++.+ +++.+.+.|.+.++||+||+.++++|++|+..+.+..+. ...|.++|||++|+|+++|++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 689998876643 677777777789999999999999999999988775432 345688999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcC
Q 027867 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (217)
Q Consensus 92 ~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p 171 (217)
+++||+|++... ..+ |+|++|+.++.+.++++|
T Consensus 81 ~~~Gd~V~~~~~----------------------------~~~-------------------g~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTG----------------------------RAG-------------------GGYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccC----------------------------CCC-------------------ceeeEEEEEchHHeEeCC
Confidence 999999986421 012 389999999999999999
Q ss_pred CCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 172 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++++.+.+.+.|||. +.+..+++++++|||+|+ |++|++
T Consensus 114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~ 158 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSL 158 (324)
T ss_pred CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHH
Confidence 99999999988889999965 778889999999999997 999875
No 96
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.89 E-value=3.5e-22 Score=172.12 Aligned_cols=155 Identities=20% Similarity=0.264 Sum_probs=128.1
Q ss_pred eeEEeccCCCCeEEEEeecCCC---CCCeEEEEEeEeeCChhhhhhhhcCCCCCC-CCeeeeecceEEEEEeCCCCC-CC
Q 027867 18 RAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGHEAIGVVESVGENVD-GV 92 (217)
Q Consensus 18 ~a~~~~~~~~~l~~~~~~~p~~---~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~-~p~ilG~e~~G~Vv~vG~~v~-~~ 92 (217)
|++++.+++.++++++++.|.| +++||+||+.++++|++|+..+.+...... .|.++|+|++|+|+++|++++ .|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 6889999888888887777766 899999999999999999887754322212 377899999999999999998 89
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc----cEE
Q 027867 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA----HVV 168 (217)
Q Consensus 93 ~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~----~~~ 168 (217)
++||+|+......| ..+ |+|++|++++.. .++
T Consensus 82 ~~Gd~V~~~~~~~~-------------------------~~~-------------------g~~~~~~~v~~~~~~~~~~ 117 (352)
T cd08247 82 KVGDEVCGIYPHPY-------------------------GGQ-------------------GTLSQYLLVDPKKDKKSIT 117 (352)
T ss_pred CCCCEEEEeecCCC-------------------------CCC-------------------ceeeEEEEEccccccceeE
Confidence 99999986532110 012 389999999987 789
Q ss_pred EcCCCCCccccccccchhhhHHHHHHHhc-CCCCCCEEEEEcC-ChhccC
Q 027867 169 KVDPTVPPNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 169 ~~p~~~~~~~aa~l~~~~~ta~~a~~~~~-~~~~g~~VlI~Ga-G~vG~~ 216 (217)
++|+++++++++.+++++.|||+++.+.. ++++|++|||+|+ |.+|++
T Consensus 118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~ 167 (352)
T cd08247 118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRF 167 (352)
T ss_pred ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHH
Confidence 99999999999999999999999776666 7999999999998 788865
No 97
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.88 E-value=4.3e-22 Score=168.12 Aligned_cols=155 Identities=27% Similarity=0.375 Sum_probs=130.1
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
||++++...+.. +++.+.+.|.++++||+||++++++|+.|+....+.++....|.++|||++|+|+++|. ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 578888776642 67778888888999999999999999999998887654445678999999999999995 57999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
||+|+..... .+.... |+|++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~ 115 (320)
T cd08243 79 GQRVATAMGG------------------------MGRTFD-------------------GSYAEYTLVPNEQVYAIDSDL 115 (320)
T ss_pred CCEEEEecCC------------------------CCCCCC-------------------cccceEEEcCHHHcEeCCCCC
Confidence 9999865310 111112 389999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
++++++.+++++.|||.++.+..++++|++|||+|+ |++|++
T Consensus 116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~ 158 (320)
T cd08243 116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLA 158 (320)
T ss_pred CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHH
Confidence 999999999999999998877788999999999998 899875
No 98
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=5.4e-22 Score=167.85 Aligned_cols=154 Identities=29% Similarity=0.435 Sum_probs=133.3
Q ss_pred eeeEEeccCC--CCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 17 ~~a~~~~~~~--~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
|||+++.+++ +.+++++++.|++.+++|+||+.++++|++|+....+.......|.++|||++|+|+.+|++++++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 6899999988 24999999999999999999999999999999887766533334678999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
||+|++... ...+ |+|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~---------------------------~~~~-------------------~~~~s~~~~~~~~~~~ip~~~ 114 (325)
T cd08271 81 GDRVAYHAS---------------------------LARG-------------------GSFAEYTVVDARAVLPLPDSL 114 (325)
T ss_pred CCEEEeccC---------------------------CCCC-------------------ccceeEEEeCHHHeEECCCCC
Confidence 999986421 0112 389999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+..+++.+.+.+.++|.++.+..++++|++|+|+|+ |.+|++
T Consensus 115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~ 157 (325)
T cd08271 115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSF 157 (325)
T ss_pred CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHH
Confidence 999999998999999998778888999999999998 778865
No 99
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.88 E-value=5.1e-22 Score=169.53 Aligned_cols=154 Identities=27% Similarity=0.247 Sum_probs=130.2
Q ss_pred eeeEEeccCCCC-----eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCC
Q 027867 17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG 91 (217)
Q Consensus 17 ~~a~~~~~~~~~-----l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~ 91 (217)
|||+++.+++++ +++++++.|.+.++||+||+.++++|++|+..+.+..+...+|.++|||++|+|+++|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 579999988763 555677888889999999999999999999988776543456779999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcC
Q 027867 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (217)
Q Consensus 92 ~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p 171 (217)
|++||+|+.... ...+ |+|++|+.++.+.++++|
T Consensus 81 ~~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~ip 114 (336)
T cd08252 81 FKVGDEVYYAGD---------------------------ITRP-------------------GSNAEYQLVDERIVGHKP 114 (336)
T ss_pred CCCCCEEEEcCC---------------------------CCCC-------------------ccceEEEEEchHHeeeCC
Confidence 999999975310 0012 389999999999999999
Q ss_pred CCCCccccccccchhhhHHHHHHHhcCCCC-----CCEEEEEcC-ChhccC
Q 027867 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLA 216 (217)
Q Consensus 172 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~-----g~~VlI~Ga-G~vG~~ 216 (217)
+++++++++.+++.+.|||.++.+...+.+ |++|+|+|+ |++|++
T Consensus 115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~ 165 (336)
T cd08252 115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSI 165 (336)
T ss_pred CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHH
Confidence 999999999999999999998777788877 999999997 899865
No 100
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.88 E-value=6e-22 Score=168.60 Aligned_cols=144 Identities=20% Similarity=0.223 Sum_probs=117.5
Q ss_pred eeeeEEeccC--CCC----eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCC
Q 027867 16 QCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV 89 (217)
Q Consensus 16 ~~~a~~~~~~--~~~----l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v 89 (217)
.||++++.++ +++ +++++.+.|+|+++||||||++++||+.|.+.... . ..+|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~-~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L-NEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C-CCCCcEecceEEEEEec---CC
Confidence 4899999883 332 88899999999999999999999999987653221 1 24688999999999995 44
Q ss_pred CCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccc---c
Q 027867 90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA---H 166 (217)
Q Consensus 90 ~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~---~ 166 (217)
++|++||+|+.. ++|++|++++.+ .
T Consensus 76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~ 103 (329)
T cd08294 76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD 103 (329)
T ss_pred CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence 679999999742 168999999999 9
Q ss_pred EEEcCCCCCc-----cccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 167 VVKVDPTVPP-----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 167 ~~~~p~~~~~-----~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
++++|++++. ..++.+++++.|||+++.+..++++|++|||+|+ |++|+++
T Consensus 104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~a 160 (329)
T cd08294 104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLV 160 (329)
T ss_pred eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHH
Confidence 9999999882 2234577899999998878899999999999997 9999753
No 101
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.88 E-value=8.9e-22 Score=167.27 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=126.6
Q ss_pred eeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 18 ~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
||+++...+.+ ++++++|.|.+.++||+||++++++|++|+..+.+.+.. ...|.++|||++|+|+. .++..|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 68888877764 789999999999999999999999999999988886532 34578999999999998 56678999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
||+|++.... .|...+ |++++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~iP~~~ 115 (323)
T TIGR02823 79 GDEVIVTGYG------------------------LGVSHD-------------------GGYSQYARVPADWLVPLPEGL 115 (323)
T ss_pred CCEEEEccCC------------------------CCCCCC-------------------ccceEEEEEchhheEECCCCC
Confidence 9999864320 111122 389999999999999999999
Q ss_pred CccccccccchhhhHHHHHHH--hcCCCCCC-EEEEEcC-ChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWR--TANVEVGS-TVVIFGL-GSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~--~~~~~~g~-~VlI~Ga-G~vG~~ 216 (217)
++++++.+++.+.++|.++.. ...+.+|+ +|||+|+ |.+|++
T Consensus 116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~ 161 (323)
T TIGR02823 116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSL 161 (323)
T ss_pred CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHH
Confidence 999999998889999876533 34488898 9999998 999865
No 102
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.88 E-value=5.8e-22 Score=169.12 Aligned_cols=131 Identities=20% Similarity=0.207 Sum_probs=111.7
Q ss_pred eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeecccCCCC
Q 027867 29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTE 108 (217)
Q Consensus 29 l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~ 108 (217)
|++++.+.|+|++|||||||.|++||+.|+. +.+.....|.++|.|++|+|+++|+ .|++||+|+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------- 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------- 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence 8889999999999999999999999997643 4333334578999999999999874 59999999742
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEc----CCCCCcccc-cccc
Q 027867 109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV----DPTVPPNRA-CLLS 183 (217)
Q Consensus 109 c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~----p~~~~~~~a-a~l~ 183 (217)
++|++|++++.+.+.++ |++++++++ +.++
T Consensus 86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~ 120 (325)
T TIGR02825 86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG 120 (325)
T ss_pred ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence 16899999998888877 899999887 6788
Q ss_pred chhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 184 CGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 184 ~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
+++.|||+++.+..++++|++|||+|+ |++|+++
T Consensus 121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~a 155 (325)
T TIGR02825 121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVV 155 (325)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHH
Confidence 899999998888899999999999997 9999753
No 103
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.88 E-value=8.6e-22 Score=167.43 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=124.0
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCC-CCCCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~-~~~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++.+++++ +++++.+.|.|.++||+||+.++++|++|.....+.. ....+|.++|||++|+|+++| +..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 689999888764 7889999999999999999999999999987654321 123457899999999999964 46799
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|++.... .|...+| +|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~ 115 (326)
T cd08289 79 PGDEVIVTSYD------------------------LGVSHHG-------------------GYSEYARVPAEWVVPLPKG 115 (326)
T ss_pred CCCEEEEcccc------------------------cCCCCCC-------------------cceeEEEEcHHHeEECCCC
Confidence 99999865320 1222233 9999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHh--cCC-CCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRT--ANV-EVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~--~~~-~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++.+++++.|||.++... ..+ ..+++|||+|+ |++|++
T Consensus 116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~ 162 (326)
T cd08289 116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSL 162 (326)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHH
Confidence 99999999999999998865432 333 34789999998 999865
No 104
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=6.6e-22 Score=166.52 Aligned_cols=146 Identities=23% Similarity=0.288 Sum_probs=123.3
Q ss_pred eeeEEeccCCC-CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 17 CRAAIATAPGE-PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 17 ~~a~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
||++++.+.+. .+++++.+.|.++++||+||+.++++|+.|++..... ..+.++|||++|+|+++|+++..|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G 76 (305)
T cd08270 1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG 76 (305)
T ss_pred CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence 58888877541 1777789999999999999999999999999876522 235789999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
|+|+... .+ |+|++|+.++.+.++++|++++
T Consensus 77 d~V~~~~------------------------------~~-------------------g~~~~~~~v~~~~~~~ip~~~~ 107 (305)
T cd08270 77 ARVVGLG------------------------------AM-------------------GAWAELVAVPTGWLAVLPDGVS 107 (305)
T ss_pred CEEEEec------------------------------CC-------------------cceeeEEEEchHHeEECCCCCC
Confidence 9997531 11 3899999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++.+++.+.|||+++.+.... +|++|+|+|+ |++|++
T Consensus 108 ~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~ 148 (305)
T cd08270 108 FAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRF 148 (305)
T ss_pred HHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHH
Confidence 999999999999999976554444 6999999998 888865
No 105
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=1e-21 Score=167.14 Aligned_cols=151 Identities=28% Similarity=0.342 Sum_probs=132.1
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
.||+++...+.+ +++++.+.|.|.++||+||+.++++|++|+.++.+.+.. ..+|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (331)
T cd08273 1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE 80 (331)
T ss_pred CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence 378888887754 888889999999999999999999999999988776532 34678999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|..... . |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~ 111 (331)
T cd08273 81 VGDRVAALTR------------------------------V-------------------GGNAEYINLDAKYLVPVPEG 111 (331)
T ss_pred CCCEEEEeCC------------------------------C-------------------cceeeEEEechHHeEECCCC
Confidence 9999986421 1 38999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++.+.+++.+||.++.+..++.+|++|+|+|+ |++|++
T Consensus 112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~ 155 (331)
T cd08273 112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQA 155 (331)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHH
Confidence 9999999999999999998777788999999999998 899865
No 106
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.87 E-value=1.6e-21 Score=164.29 Aligned_cols=156 Identities=29% Similarity=0.359 Sum_probs=132.3
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC-CCCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~-~~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
||++++..++.+ +++.+++.|.+.+++|+|+++++++|++|+..+.+.+. ....|.++|||++|+|+++|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 578888776543 88889999999999999999999999999988877653 235688999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|+..... .+ ... |++++|+.++.+.++++|++
T Consensus 81 ~Gd~v~~~~~~------------------------~~-~~~-------------------g~~~~~~~~~~~~~~~ip~~ 116 (325)
T cd08253 81 VGDRVWLTNLG------------------------WG-RRQ-------------------GTAAEYVVVPADQLVPLPDG 116 (325)
T ss_pred CCCEEEEeccc------------------------cC-CCC-------------------cceeeEEEecHHHcEeCCCC
Confidence 99999875310 00 012 38999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++.+.+++.+||.++.+..++.+|++|+|+|+ |++|++
T Consensus 117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~ 160 (325)
T cd08253 117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHA 160 (325)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHH
Confidence 9999999999999999998777789999999999997 888865
No 107
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.87 E-value=1.9e-21 Score=163.47 Aligned_cols=151 Identities=27% Similarity=0.367 Sum_probs=130.0
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++.+++.+ +++.+.+.|.+.++||+||+.++++|+.|+....+.++. ..+|.++|||++|+|+++|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 689999886543 777888888889999999999999999999888765432 34578999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|+.... + |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~ 111 (323)
T cd05276 81 VGDRVCALLA------------------------------G-------------------GGYAEYVVVPAGQLLPVPEG 111 (323)
T ss_pred CCCEEEEecC------------------------------C-------------------CceeEEEEcCHHHhccCCCC
Confidence 9999975311 1 38999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++.+++.+..++.++|.++.+...+.++++|+|+|+ |++|++
T Consensus 112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~ 155 (323)
T cd05276 112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTA 155 (323)
T ss_pred CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHH
Confidence 9999999998899999998777788999999999998 888864
No 108
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.87 E-value=2.7e-21 Score=163.33 Aligned_cols=156 Identities=27% Similarity=0.296 Sum_probs=131.8
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC-CCCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~-~~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++..++.+ +++++.+.|.+.++||+|+++++++|++|+.+..+... ....|.++|||++|+|+++|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 689999888764 77888888888999999999999999999988777543 123578899999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|+.... + .+ .. .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~-----------~-------------~~-~~-------------------~g~~~~~~~v~~~~~~~~p~~ 116 (326)
T cd08272 81 VGDEVYGCAG-----------G-------------LG-GL-------------------QGSLAEYAVVDARLLALKPAN 116 (326)
T ss_pred CCCEEEEccC-----------C-------------cC-CC-------------------CCceeEEEEecHHHcccCCCC
Confidence 9999986421 0 00 01 148999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++..++.+++.+.+||.++.+..++++|++++|+|+ |.+|++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~ 160 (326)
T cd08272 117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHV 160 (326)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHH
Confidence 9999999888899999998778899999999999997 888865
No 109
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.86 E-value=7.2e-21 Score=161.63 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=125.5
Q ss_pred eeeEEeccCCC--CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++.+++. .+++++.|.|+|+++||+||+.++++|++|...+.+.+.. ..+|.++|||++|+|++ +++++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 68999998774 3889999999999999999999999999999988776432 24578899999999999 7777899
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|++.... .+.... |+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~v~~~~~~~lp~~ 115 (324)
T cd08288 79 PGDRVVLTGWG------------------------VGERHW-------------------GGYAQRARVKADWLVPLPEG 115 (324)
T ss_pred CCCEEEECCcc------------------------CCCCCC-------------------CcceeEEEEchHHeeeCCCC
Confidence 99999864210 011112 38999999999999999999
Q ss_pred CCccccccccchhhhHHHHHH--HhcCCC-CCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAW--RTANVE-VGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~--~~~~~~-~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++.+++.+.+++.++. +..... +|++|||+|+ |++|++
T Consensus 116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~ 162 (324)
T cd08288 116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSV 162 (324)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHH
Confidence 999999999888888887543 234555 6789999998 999875
No 110
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.85 E-value=1.1e-20 Score=159.52 Aligned_cols=156 Identities=33% Similarity=0.387 Sum_probs=130.4
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+++...+.+ +++.+.+.|.+.+++|+|++.++++|+.|+.+..+.+.. ..+|.++|||++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 578888776543 777788888889999999999999999999887765432 24477899999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|+..+.. +...+ |++++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~-------------------------~~~~~-------------------g~~~~~~~~~~~~~~~~p~~ 116 (328)
T cd08268 81 VGDRVSVIPAA-------------------------DLGQY-------------------GTYAEYALVPAAAVVKLPDG 116 (328)
T ss_pred CCCEEEecccc-------------------------ccCCC-------------------ccceEEEEechHhcEeCCCC
Confidence 99999865320 01111 38999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++++.+.+++.++|.++.+...+.++++|+|+|+ |++|++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~ 160 (328)
T cd08268 117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLA 160 (328)
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHH
Confidence 9999999888999999998877888999999999998 888865
No 111
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.85 E-value=1e-20 Score=158.48 Aligned_cols=154 Identities=26% Similarity=0.353 Sum_probs=129.3
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC---CCCCCeeeeecceEEEEEeCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG 91 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~---~~~~p~ilG~e~~G~Vv~vG~~v~~ 91 (217)
|||+++..++.. +++++.+.|.++++||+||+.++++|+.|+..+.+... ....|.++|||++|+|+.+|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 678888877653 56677778888999999999999999999998877542 2345789999999999999999999
Q ss_pred CCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcC
Q 027867 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (217)
Q Consensus 92 ~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p 171 (217)
+++||+|+..... ..+ |+|++|+.++.+.++++|
T Consensus 81 ~~~G~~V~~~~~~---------------------------~~~-------------------g~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF---------------------------TRG-------------------GAYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC---------------------------CCC-------------------CcceeEEEecHHHhccCC
Confidence 9999999864310 011 389999999999999999
Q ss_pred CCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 172 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++..++.+.+.+.++|.++.+...+.+|++|||+|+ |.+|++
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~ 160 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSF 160 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHH
Confidence 999999998888899999997766677999999999998 888865
No 112
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.84 E-value=2.4e-20 Score=157.41 Aligned_cols=139 Identities=27% Similarity=0.416 Sum_probs=115.0
Q ss_pred cCCCCeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhh-hcCCCC--CCCCeeeeecceEEEEEeCCCCCCCCCCCEEee
Q 027867 24 APGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP--AVFPRILGHEAIGVVESVGENVDGVVEGDVVIP 100 (217)
Q Consensus 24 ~~~~~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~-~g~~~~--~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~ 100 (217)
+.+. +++++++.|++.++||+||+.++++|++|+..+ .+.... ..+|.++|+|++|+|+++|++++++++||+|+.
T Consensus 3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 81 (312)
T cd08269 3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG 81 (312)
T ss_pred CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence 4455 999999999999999999999999999999887 665321 224789999999999999999999999999986
Q ss_pred ecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccccc
Q 027867 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180 (217)
Q Consensus 101 ~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~aa 180 (217)
... |+|++|+.++.+.++++|+++ ..++
T Consensus 82 ~~~--------------------------------------------------g~~~~~~~v~~~~~~~lP~~~--~~~~ 109 (312)
T cd08269 82 LSG--------------------------------------------------GAFAEYDLADADHAVPLPSLL--DGQA 109 (312)
T ss_pred ecC--------------------------------------------------CcceeeEEEchhheEECCCch--hhhH
Confidence 421 389999999999999999988 2333
Q ss_pred cccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 181 ~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
.+..+++++++++ +..++++|++|||+|+|++|++
T Consensus 110 ~~~~~~~~a~~~~-~~~~~~~~~~vlI~g~g~vg~~ 144 (312)
T cd08269 110 FPGEPLGCALNVF-RRGWIRAGKTVAVIGAGFIGLL 144 (312)
T ss_pred HhhhhHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 3336788888865 4888999999999987888865
No 113
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.84 E-value=2e-20 Score=158.57 Aligned_cols=139 Identities=23% Similarity=0.323 Sum_probs=121.8
Q ss_pred eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeecccCCC
Q 027867 29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCT 107 (217)
Q Consensus 29 l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~ 107 (217)
+++++.+.|++.++||+||++++++|+.|..++.+.+.. ..+|.++|||++|+|+++|++++.+++||+|++.+.
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 667788888999999999999999999999888776532 346789999999999999999999999999986421
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccccccccchhh
Q 027867 108 ECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187 (217)
Q Consensus 108 ~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ 187 (217)
. |+|++|+.++.+.++++|+++++++++.+.+...
T Consensus 90 --------------------------~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ 124 (323)
T cd05282 90 --------------------------E-------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL 124 (323)
T ss_pred --------------------------C-------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence 1 3899999999999999999999999998888999
Q ss_pred hHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 188 TGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 188 ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+||.++.+...+.+|++|||+|+ |.+|++
T Consensus 125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~ 154 (323)
T cd05282 125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRM 154 (323)
T ss_pred HHHHHHHHhccCCCCCEEEEcccccHHHHH
Confidence 99998777788899999999998 888865
No 114
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.84 E-value=4.6e-20 Score=154.85 Aligned_cols=149 Identities=30% Similarity=0.341 Sum_probs=126.4
Q ss_pred eeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCC
Q 027867 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (217)
Q Consensus 18 ~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vG 95 (217)
||+.+...+.+ +.+.+.+.+.+.++||+||+.++++|+.|+....+.++. .+|.++|||++|+|+.+|+++++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG 79 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence 46666655543 667777777788999999999999999999988776543 457789999999999999999999999
Q ss_pred CEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCC
Q 027867 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (217)
Q Consensus 96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~ 175 (217)
|+|+... .. |++++|+.++.+.++++|++++
T Consensus 80 ~~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~~ 110 (320)
T cd05286 80 DRVAYAG------------------------------PP-------------------GAYAEYRVVPASRLVKLPDGIS 110 (320)
T ss_pred CEEEEec------------------------------CC-------------------CceeEEEEecHHHceeCCCCCC
Confidence 9998531 01 3899999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 176 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++++.+.+...++|.++.+..++.+|++|||+|+ |++|++
T Consensus 111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~ 152 (320)
T cd05286 111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLL 152 (320)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHH
Confidence 99999888899999998777889999999999997 898865
No 115
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.83 E-value=6.3e-20 Score=155.95 Aligned_cols=150 Identities=26% Similarity=0.320 Sum_probs=127.6
Q ss_pred eeEEeccCCC--CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCCC
Q 027867 18 RAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE 94 (217)
Q Consensus 18 ~a~~~~~~~~--~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~v 94 (217)
||+++...+. .+++.+.+.|.+.++||+||+.++++|+.|+.++.+.+.. ...|.++|||++|+|+.+|+++.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 4566665543 2777788888889999999999999999999988776532 245778999999999999999999999
Q ss_pred CCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCC
Q 027867 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (217)
Q Consensus 95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~ 174 (217)
||+|+.... + |+|++|+.++.+.++++|+++
T Consensus 81 G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~~ 111 (337)
T cd08275 81 GDRVMGLTR------------------------------F-------------------GGYAEVVNVPADQVFPLPDGM 111 (337)
T ss_pred CCEEEEecC------------------------------C-------------------CeeeeEEEecHHHeEECCCCC
Confidence 999986421 1 289999999999999999999
Q ss_pred CccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 175 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
++++++.+.+++.++|.++.+..++++|++|+|+|+ |.+|++
T Consensus 112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~ 154 (337)
T cd08275 112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLA 154 (337)
T ss_pred CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHH
Confidence 999999888899999998878889999999999998 888865
No 116
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.82 E-value=1.4e-19 Score=152.57 Aligned_cols=151 Identities=28% Similarity=0.350 Sum_probs=128.1
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~ 93 (217)
|||+.+...+.+ +++++.+.|.+.+++|+||+.++++|+.|+....+.+.. ..+|.++|||++|+|+.+|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 578888775554 667777777788999999999999999999887765432 34568999999999999999999999
Q ss_pred CCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCC
Q 027867 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (217)
Q Consensus 94 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~ 173 (217)
+||+|+.... + |++++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~ 111 (325)
T TIGR02824 81 VGDRVCALVA------------------------------G-------------------GGYAEYVAVPAGQVLPVPEG 111 (325)
T ss_pred CCCEEEEccC------------------------------C-------------------CcceeEEEecHHHcEeCCCC
Confidence 9999975310 1 28999999999999999999
Q ss_pred CCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 174 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++..++.+.+++.++|.++.+..++++|++|+|+|+ |++|++
T Consensus 112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~ 155 (325)
T TIGR02824 112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTT 155 (325)
T ss_pred CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHH
Confidence 9999998888899999998788899999999999997 888864
No 117
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.82 E-value=1.2e-19 Score=153.05 Aligned_cols=141 Identities=26% Similarity=0.290 Sum_probs=121.1
Q ss_pred EEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCC---CCCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeecccCC
Q 027867 30 VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADC 106 (217)
Q Consensus 30 ~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~---~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c 106 (217)
++++.+.|.++++||+|+++++++|++|+..+.+.+. ....+.++|||++|+|+++|+++.++++||+|+.....
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~-- 92 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP-- 92 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence 7788899999999999999999999999998877652 12346789999999999999999999999999864310
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccccccccchh
Q 027867 107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186 (217)
Q Consensus 107 ~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~ 186 (217)
... |+|++|+.++.+.++++|+++++++++.+.+++
T Consensus 93 -------------------------~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 93 -------------------------KGG-------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred -------------------------CCC-------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 011 389999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 187 STGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 187 ~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
.+||+++.+..++++|++|+|+|+ |++|++
T Consensus 129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~ 159 (319)
T cd08267 129 LTALQALRDAGKVKPGQRVLINGASGGVGTF 159 (319)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHH
Confidence 999998777777999999999998 888865
No 118
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.81 E-value=2e-19 Score=154.80 Aligned_cols=140 Identities=28% Similarity=0.455 Sum_probs=112.6
Q ss_pred eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-C---CCCeeeeecceEEEEEeCCC----CCCCCCCCEEee
Q 027867 29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A---VFPRILGHEAIGVVESVGEN----VDGVVEGDVVIP 100 (217)
Q Consensus 29 l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~---~~p~ilG~e~~G~Vv~vG~~----v~~~~vGd~V~~ 100 (217)
...++.++|.|+++|++|++.++++|+.|++++.+.+.. . .+|.+++.++.|++..++.. +..+..||.+..
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 444788999999999999999999999999999988755 3 47766666666664443332 233455554432
Q ss_pred ecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccccc
Q 027867 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180 (217)
Q Consensus 101 ~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~aa 180 (217)
. ..+ |+|+||+++|...++++|+++++++||
T Consensus 100 ~------------------------------~~~-------------------g~~aey~v~p~~~~~~~P~~l~~~~aa 130 (347)
T KOG1198|consen 100 F------------------------------LSS-------------------GGLAEYVVVPEKLLVKIPESLSFEEAA 130 (347)
T ss_pred c------------------------------cCC-------------------CceeeEEEcchhhccCCCCccChhhhh
Confidence 1 112 499999999999999999999999999
Q ss_pred cccchhhhHHHHHHHhc------CCCCCCEEEEEcC-ChhccCC
Q 027867 181 LLSCGVSTGVGAAWRTA------NVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 181 ~l~~~~~ta~~a~~~~~------~~~~g~~VlI~Ga-G~vG~~a 217 (217)
+++.++.|||.+++... ++++|++|||+|+ |+||++|
T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~a 174 (347)
T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAA 174 (347)
T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHH
Confidence 99999999999999999 8999999999988 8999864
No 119
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.81 E-value=4.3e-19 Score=151.02 Aligned_cols=146 Identities=21% Similarity=0.178 Sum_probs=117.1
Q ss_pred eeeEEeccCCC------CeEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCC---CCCCCCeeeeecceEEEEEeCC
Q 027867 17 CRAAIATAPGE------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGE 87 (217)
Q Consensus 17 ~~a~~~~~~~~------~l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~---~~~~~p~ilG~e~~G~Vv~vG~ 87 (217)
.||+++....+ .+++++++.|++.++||+||+.++++|+.|.....+.. .+...+.++|+|++|+|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~ 81 (329)
T cd05288 2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS 81 (329)
T ss_pred CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence 46777755431 18889999999999999999999999998866554431 1112346889999999999996
Q ss_pred CCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEecc-cc
Q 027867 88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AH 166 (217)
Q Consensus 88 ~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~-~~ 166 (217)
. +|++||+|+.. ++|++|+.++. +.
T Consensus 82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~ 107 (329)
T cd05288 82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG 107 (329)
T ss_pred C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence 4 79999999742 27999999999 99
Q ss_pred EEEcCCCCC--cccccc-ccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 167 VVKVDPTVP--PNRACL-LSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 167 ~~~~p~~~~--~~~aa~-l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
++++|++++ +..++. +++++.|||+++.+...+.++++|||+|+ |++|++
T Consensus 108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~ 161 (329)
T cd05288 108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSV 161 (329)
T ss_pred cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHH
Confidence 999999985 445544 78899999998777788999999999997 899865
No 120
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.80 E-value=7.5e-19 Score=147.86 Aligned_cols=150 Identities=32% Similarity=0.451 Sum_probs=125.2
Q ss_pred eeeEEeccCCCC--eEEEEeecCCCC-CCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCC
Q 027867 17 CRAAIATAPGEP--LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV 92 (217)
Q Consensus 17 ~~a~~~~~~~~~--l~~~~~~~p~~~-~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~ 92 (217)
|+|+++..++.+ +++.+.+ |.+. ++|++||+.++++|++|+..+.+.+.. ...|.++|||++|+|+.+|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 578888755443 7777777 7666 499999999999999999887776532 2346689999999999999999999
Q ss_pred CCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCC
Q 027867 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (217)
Q Consensus 93 ~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~ 172 (217)
++||+|+.... . |++++|+.++.+.++++|+
T Consensus 80 ~~G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~ 110 (323)
T cd08241 80 KVGDRVVALTG------------------------------Q-------------------GGFAEEVVVPAAAVFPLPD 110 (323)
T ss_pred CCCCEEEEecC------------------------------C-------------------ceeEEEEEcCHHHceeCCC
Confidence 99999986420 1 3899999999999999999
Q ss_pred CCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 173 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+++..+++.+..+..+||.++.+..+++++++|+|+|+ |++|++
T Consensus 111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~ 155 (323)
T cd08241 111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLA 155 (323)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHH
Confidence 99998888888899999997776788999999999998 888864
No 121
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.80 E-value=5.4e-19 Score=147.79 Aligned_cols=133 Identities=27% Similarity=0.334 Sum_probs=115.0
Q ss_pred cCCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccC
Q 027867 36 VDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRS 114 (217)
Q Consensus 36 ~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~ 114 (217)
.|.+.+++|+||+.++++|+.|+..+.+.++. ..+|.++|+|++|+|+++|+++++|++||+|+.....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 57788999999999999999999988776532 3567899999999999999999999999999864210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHH
Q 027867 115 KKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194 (217)
Q Consensus 115 g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~ 194 (217)
.. |+|++|+.++.+.++++|+++++++++.++..+.+||.++
T Consensus 72 ------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l- 113 (303)
T cd08251 72 ------------------SM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF- 113 (303)
T ss_pred ------------------CC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence 11 3899999999999999999999999999988999999965
Q ss_pred HhcCCCCCCEEEEEcC-ChhccC
Q 027867 195 RTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 195 ~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+..++++|++|+|+++ |.+|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~ 136 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLM 136 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHH
Confidence 6788999999999977 888864
No 122
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.77 E-value=2.5e-18 Score=142.23 Aligned_cols=123 Identities=28% Similarity=0.279 Sum_probs=109.3
Q ss_pred CeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCC
Q 027867 42 HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS 121 (217)
Q Consensus 42 ~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~ 121 (217)
+||+||+.++++|++|++.+.+.++ .+|.++|||++|+|+++|++++.|++||+|+...
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------- 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------- 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence 5899999999999999998887652 4578999999999999999999999999997642
Q ss_pred CCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCC
Q 027867 122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV 201 (217)
Q Consensus 122 ~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~ 201 (217)
+ |+|++|+.++.+.++++|+++++.+++.+.++..++|.++.+..++++
T Consensus 60 ------------~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (293)
T cd05195 60 ------------P-------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK 108 (293)
T ss_pred ------------c-------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence 1 389999999999999999999999999988899999998777789999
Q ss_pred CCEEEEEcC-ChhccC
Q 027867 202 GSTVVIFGL-GSIGLA 216 (217)
Q Consensus 202 g~~VlI~Ga-G~vG~~ 216 (217)
|++|+|+|+ |.+|++
T Consensus 109 g~~vlv~g~~g~~g~~ 124 (293)
T cd05195 109 GESVLIHAAAGGVGQA 124 (293)
T ss_pred CCEEEEecCCCHHHHH
Confidence 999999986 888864
No 123
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.72 E-value=3.6e-17 Score=135.31 Aligned_cols=118 Identities=28% Similarity=0.288 Sum_probs=104.9
Q ss_pred EEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCC
Q 027867 46 VRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125 (217)
Q Consensus 46 V~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~ 125 (217)
||+.++++|++|++.+.+.++ .|.++|||++|+|+++|++++.|++||+|+...
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------------------- 55 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------------------- 55 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence 799999999999999877653 357899999999999999999999999997531
Q ss_pred CCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEE
Q 027867 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205 (217)
Q Consensus 126 ~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~V 205 (217)
+ |+|++|+.++.+.++++|+++++++++.+.+++.++|.++.+...+.+|++|
T Consensus 56 --------~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v 108 (288)
T smart00829 56 --------P-------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV 108 (288)
T ss_pred --------C-------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence 1 3899999999999999999999999999999999999977788899999999
Q ss_pred EEEcC-ChhccC
Q 027867 206 VIFGL-GSIGLA 216 (217)
Q Consensus 206 lI~Ga-G~vG~~ 216 (217)
+|+|+ |.+|++
T Consensus 109 lv~g~~~~~g~~ 120 (288)
T smart00829 109 LIHAAAGGVGQA 120 (288)
T ss_pred EEecCCcHHHHH
Confidence 99997 888864
No 124
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=132.01 Aligned_cols=135 Identities=24% Similarity=0.251 Sum_probs=106.6
Q ss_pred eEEEEeecCCCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCCCeeeeecceEEEEEeC--CCCCCCCCCCEEeeecccCC
Q 027867 29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVG--ENVDGVVEGDVVIPHFLADC 106 (217)
Q Consensus 29 l~~~~~~~p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~p~ilG~e~~G~Vv~vG--~~v~~~~vGd~V~~~~~~~c 106 (217)
|+++++++|+|+++|||||++|.+++|.....++.. +....|+-+|-...|.++... ++...|++||.|+..
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~-~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~----- 100 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDA-PSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV----- 100 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCC-cccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec-----
Confidence 999999999999999999999999999655444433 233456666666665555432 556789999999743
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccc--cccccc
Q 027867 107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR--ACLLSC 184 (217)
Q Consensus 107 ~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~--aa~l~~ 184 (217)
.+|+||.+++.+.+.++++..-+.. ...|.+
T Consensus 101 -----------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm 133 (340)
T COG2130 101 -----------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM 133 (340)
T ss_pred -----------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence 2799999999999999976543333 335778
Q ss_pred hhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 185 GVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 185 ~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
+..|||.++++.+..++||+|+|.+| |++|..
T Consensus 134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsv 166 (340)
T COG2130 134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSV 166 (340)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEEecccccchH
Confidence 99999999999999999999999988 998864
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.52 E-value=3.3e-14 Score=118.34 Aligned_cols=99 Identities=29% Similarity=0.432 Sum_probs=86.6
Q ss_pred cCCCCCCCCeeeeecceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 027867 63 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL 142 (217)
Q Consensus 63 g~~~~~~~p~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~ 142 (217)
|.++. .+|.++|||++|+|+++|+++++|++||+|+..
T Consensus 14 ~~~~~-~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~----------------------------------------- 51 (277)
T cd08255 14 GTEKL-PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF----------------------------------------- 51 (277)
T ss_pred cCccC-cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------
Confidence 44444 588999999999999999999999999999753
Q ss_pred CCceeeeccccceeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 143 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 143 ~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
+.|++|++++.+.++++|+++++++++.+ +.+.|||+++ ...++++|++|||+|+|++|++
T Consensus 52 -----------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~ 112 (277)
T cd08255 52 -----------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLL 112 (277)
T ss_pred -----------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHH
Confidence 16899999999999999999999998888 7899999975 5788999999999988988865
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.31 E-value=4.5e-11 Score=98.95 Aligned_cols=135 Identities=21% Similarity=0.180 Sum_probs=97.0
Q ss_pred eEEE--Eeec-CCCCCCeEEEEEeEeeCChhhhhhhhcCCCC-CCCCeeeee----cceEEEEEeCCCCCCCCCCCEEee
Q 027867 29 LVID--EVIV-DPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGH----EAIGVVESVGENVDGVVEGDVVIP 100 (217)
Q Consensus 29 l~~~--~~~~-p~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~-~~~p~ilG~----e~~G~Vv~vG~~v~~~~vGd~V~~ 100 (217)
|.++ +.++ .++++++||||.+|.+..|.....+....+. ...|+.+|- .++|+|++. +-+++++||.|..
T Consensus 22 ~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g 99 (343)
T KOG1196|consen 22 FEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWG 99 (343)
T ss_pred ceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEE
Confidence 4443 3443 3568899999999999988875544433222 122333322 789999995 4468999999953
Q ss_pred ecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEecccc--EEEcC--CCCCc
Q 027867 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVD--PTVPP 176 (217)
Q Consensus 101 ~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~--~~~~p--~~~~~ 176 (217)
.. +|.||.+++.+. .++++ .++++
T Consensus 100 ~~----------------------------------------------------gWeeysii~~~~~~~~ki~~~~~~pL 127 (343)
T KOG1196|consen 100 IV----------------------------------------------------GWEEYSVITPNDLEHFKIQHPTDVPL 127 (343)
T ss_pred ec----------------------------------------------------cceEEEEecCcchhcccCCCCCccCH
Confidence 21 799999997653 44544 45565
Q ss_pred cccc-cccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 177 NRAC-LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 177 ~~aa-~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
.... ++.++..|||..+++...+++|++|+|.|| |++|+++
T Consensus 128 s~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~ 170 (343)
T KOG1196|consen 128 SYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLV 170 (343)
T ss_pred hhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHH
Confidence 5544 577899999999999999999999999998 9999763
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.19 E-value=1e-11 Score=117.07 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=108.1
Q ss_pred eEEEEeecC---CCCCCeEEEEEeEeeCChhhhhhhhcCCCCCCC-------CeeeeecceEEEEEeCCCCCCCCCCCEE
Q 027867 29 LVIDEVIVD---PPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF-------PRILGHEAIGVVESVGENVDGVVEGDVV 98 (217)
Q Consensus 29 l~~~~~~~p---~~~~~eVlV~v~a~~i~~~D~~~~~g~~~~~~~-------p~ilG~e~~G~Vv~vG~~v~~~~vGd~V 98 (217)
+++.+-|.. +..++.-+.-|.|+.||..|+.+..|..+.... ..++|-||+|+- +-|.||
T Consensus 1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGRRV 1498 (2376)
T ss_pred eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCcEE
Confidence 566666644 235677799999999999999999998866333 368999999883 448999
Q ss_pred eeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeeccccceeeeeEEeccccEEEcCCCCCccc
Q 027867 99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR 178 (217)
Q Consensus 99 ~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~p~~~~~~~ 178 (217)
..... .. ++|+.+.++.+.+|.+|++..+++
T Consensus 1499 M~mvp------------------------------Ak-------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVP------------------------------AK-------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred EEeee------------------------------hh-------------------hhhhhhhcchhhhhhCCcccchhh
Confidence 64321 11 789999999999999999999999
Q ss_pred cccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccCC
Q 027867 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAV 217 (217)
Q Consensus 179 aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~a 217 (217)
|+..++.+.|+|+|++.+...++||+|||+++ |++|++|
T Consensus 1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAA 1569 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAA 1569 (2376)
T ss_pred cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHH
Confidence 99999999999999999999999999999965 9999875
No 128
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=95.29 E-value=0.019 Score=29.31 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=16.0
Q ss_pred eeeEEeccCCCCeEEEEeecCCC
Q 027867 17 CRAAIATAPGEPLVIDEVIVDPP 39 (217)
Q Consensus 17 ~~a~~~~~~~~~l~~~~~~~p~~ 39 (217)
|||++++++++ .++++++.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 79999999999 99999998865
No 129
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.26 E-value=0.00027 Score=62.85 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=63.0
Q ss_pred eeeeecceEEEEEeCCCCCCCCCCCEEeeecccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeeecc
Q 027867 72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFV 151 (217)
Q Consensus 72 ~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~ 151 (217)
..-|.|+++.+.+|+++++. +|+..+.. |++|..| ++.|..... .|...++
T Consensus 88 ~~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~l~~---------------- 138 (417)
T TIGR01035 88 ILTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKVLER---------------- 138 (417)
T ss_pred hcCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHHHHH----------------
Confidence 34689999999999999766 56666666 8888888 444544432 2323333
Q ss_pred ccceeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCChhccC
Q 027867 152 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 152 ~~g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~vG~~ 216 (217)
.|++++.++. .+..- -.++ ....++. ..|...+.+.....++++|+|+|+|.+|.+
T Consensus 139 ---lf~~a~~~~k-~vr~~-t~i~-~~~vSv~---~~Av~la~~~~~~l~~~~VlViGaG~iG~~ 194 (417)
T TIGR01035 139 ---LFQKAFSVGK-RVRTE-TDIS-AGAVSIS---SAAVELAERIFGSLKGKKALLIGAGEMGEL 194 (417)
T ss_pred ---HHHHHHHHhh-hhhhh-cCCC-CCCcCHH---HHHHHHHHHHhCCccCCEEEEECChHHHHH
Confidence 8999988875 33220 0111 1111111 111111223344467899999999999864
No 130
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=91.10 E-value=0.62 Score=32.97 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCC----CCCCCCEEeeec
Q 027867 79 IGVVESVGENVD----GVVEGDVVIPHF 102 (217)
Q Consensus 79 ~G~Vv~vG~~v~----~~~vGd~V~~~~ 102 (217)
-|+|+++|++.. .+++||+|+...
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~ 73 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLPE 73 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEcC
Confidence 599999999753 399999998643
No 131
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=88.27 E-value=0.83 Score=31.85 Aligned_cols=25 Identities=32% Similarity=0.219 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCC---------CCCCCCCEEeeec
Q 027867 78 AIGVVESVGENV---------DGVVEGDVVIPHF 102 (217)
Q Consensus 78 ~~G~Vv~vG~~v---------~~~~vGd~V~~~~ 102 (217)
..|+|+++|++. ..+++||+|+...
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK 68 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence 579999999973 3599999998643
No 132
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=87.47 E-value=0.85 Score=31.96 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCC---------CCCCCCEEeeec
Q 027867 78 AIGVVESVGENVD---------GVVEGDVVIPHF 102 (217)
Q Consensus 78 ~~G~Vv~vG~~v~---------~~~vGd~V~~~~ 102 (217)
..|+|+++|++.. .+++||+|+...
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~ 69 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGK 69 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEcC
Confidence 4799999999642 499999998643
No 133
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=86.21 E-value=1.4 Score=30.66 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=19.5
Q ss_pred ceEEEEEeCCCCC----CCCCCCEEeeec
Q 027867 78 AIGVVESVGENVD----GVVEGDVVIPHF 102 (217)
Q Consensus 78 ~~G~Vv~vG~~v~----~~~vGd~V~~~~ 102 (217)
..|+|+++|+... .+++||+|+...
T Consensus 36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 36 MKAEVVAVGKLDDEEDFDIKVGDKVIFSK 64 (91)
T ss_pred ceEEEEEECCCCccccccccCCCEEEEcc
Confidence 4699999997532 499999998643
No 134
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=83.71 E-value=1.4 Score=36.35 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=32.0
Q ss_pred eeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcCCh
Q 027867 155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS 212 (217)
Q Consensus 155 ~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~ 212 (217)
+|.+|.. +...++.+++++++..+.--. ... ....+ . ..+.++++||-+|.|.
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l-~-~~~~~~~~VLDiGcGs 130 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEAL-E-KLVLPGKTVLDVGCGS 130 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHH-H-hhcCCCCEEEEeCCcH
Confidence 4556644 667788899988887654221 111 11112 1 1256899999999864
No 135
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=81.23 E-value=2 Score=29.84 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=18.4
Q ss_pred ceEEEEEeCC--------CC-CCCCCCCEEeeecc
Q 027867 78 AIGVVESVGE--------NV-DGVVEGDVVIPHFL 103 (217)
Q Consensus 78 ~~G~Vv~vG~--------~v-~~~~vGd~V~~~~~ 103 (217)
..|+|+++|+ .+ ..+++||+|+...+
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~ 69 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKY 69 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETT
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEecccc
Confidence 5799999999 32 36999999987643
No 136
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=80.75 E-value=0.27 Score=41.99 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=35.2
Q ss_pred cEEEcCCCCCccccccccchhhhHHHHHHHhcCC----CCCCEEEEEcCChhccC
Q 027867 166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV----EVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 166 ~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~----~~g~~VlI~GaG~vG~~ 216 (217)
.++++|+.+..+.++... +.+.++.++ +.+.. .++.+|+|+|+|.+|.+
T Consensus 140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av-~~a~~~~~~l~~~~V~ViGaG~iG~~ 192 (311)
T cd05213 140 KAIKVGKRVRTETGISRG-AVSISSAAV-ELAEKIFGNLKGKKVLVIGAGEMGEL 192 (311)
T ss_pred HHHHHHHHHhhhcCCCCC-CcCHHHHHH-HHHHHHhCCccCCEEEEECcHHHHHH
Confidence 556778888888877765 566666654 33332 47899999999999864
No 137
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=76.62 E-value=4.7 Score=28.19 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=17.6
Q ss_pred eEEEEEeCCCC--C-------CCCCCCEEeee
Q 027867 79 IGVVESVGENV--D-------GVVEGDVVIPH 101 (217)
Q Consensus 79 ~G~Vv~vG~~v--~-------~~~vGd~V~~~ 101 (217)
-|+|+++|+.- . .+++||+|+..
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ 68 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLFG 68 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEEC
Confidence 48999999632 1 39999999864
No 138
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=68.68 E-value=3.3 Score=37.93 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.4
Q ss_pred CCCCCEEEEEcCChhccCC
Q 027867 199 VEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~a 217 (217)
..++++|+|+|+|.+|++|
T Consensus 162 ~~pg~kVlViGaG~iGL~A 180 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAA 180 (509)
T ss_pred CcCCCEEEEECCcHHHHHH
Confidence 4679999999999999764
No 139
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.81 E-value=3.7 Score=37.97 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=16.9
Q ss_pred CCCCCCEEEEEcCChhccCC
Q 027867 198 NVEVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~a 217 (217)
..+.|++|+|+|+|++|+++
T Consensus 133 ~~~~g~~V~VIGaGpaGL~a 152 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSA 152 (564)
T ss_pred CCCCCCEEEEECCCHHHHHH
Confidence 36789999999999999753
No 140
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=60.92 E-value=1.7 Score=38.76 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=20.6
Q ss_pred eeeeecceEEEEEeCCCCCCCCCCCEE
Q 027867 72 RILGHEAIGVVESVGENVDGVVEGDVV 98 (217)
Q Consensus 72 ~ilG~e~~G~Vv~vG~~v~~~~vGd~V 98 (217)
..-|||+++.+.+|+++++..-+|+.-
T Consensus 90 ~~~g~ea~~hl~~V~~GldS~V~GE~q 116 (423)
T PRK00045 90 VHEGEEAVRHLFRVASGLDSMVLGEPQ 116 (423)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhcCChH
Confidence 346999999999999998764445444
No 141
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=59.54 E-value=13 Score=26.22 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=21.0
Q ss_pred eecceEEEEEeCCCCC---------CCCCCCEEeeecc
Q 027867 75 GHEAIGVVESVGENVD---------GVVEGDVVIPHFL 103 (217)
Q Consensus 75 G~e~~G~Vv~vG~~v~---------~~~vGd~V~~~~~ 103 (217)
+-...|+|+++|+... .+++||+|+.+-+
T Consensus 41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpey 78 (104)
T KOG1641|consen 41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEY 78 (104)
T ss_pred cccceEEEEEEcCccccCCCCCcCccccCCCEEEeecc
Confidence 3445689999987632 4899999987643
No 142
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=57.77 E-value=8.1 Score=34.49 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=21.4
Q ss_pred HHHHHHHhcCC-CCCCEEEEEcCChhccC
Q 027867 189 GVGAAWRTANV-EVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 189 a~~a~~~~~~~-~~g~~VlI~GaG~vG~~ 216 (217)
.+.++.+..++ .+|++|+|+|+|.+|+.
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~ 216 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKG 216 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHH
Confidence 45556665554 68999999999999964
No 143
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=53.07 E-value=13 Score=26.79 Aligned_cols=33 Identities=30% Similarity=0.213 Sum_probs=28.9
Q ss_pred eeeeecceEEEEEeCCCCCCCCCCCEEeeeccc
Q 027867 72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLA 104 (217)
Q Consensus 72 ~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~ 104 (217)
.+.|-.+.|+|.--|......++||+|++..+.
T Consensus 58 vI~g~~gSg~I~lNGAAAr~~~~GD~vII~sy~ 90 (111)
T cd06919 58 VIPGERGSGVICLNGAAARLGQPGDRVIIMAYA 90 (111)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECc
Confidence 578899999999999988889999999987663
No 144
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=52.88 E-value=9.3 Score=27.70 Aligned_cols=32 Identities=31% Similarity=0.244 Sum_probs=25.6
Q ss_pred eeeeecceEEEEEeCCCCCCCCCCCEEeeecc
Q 027867 72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFL 103 (217)
Q Consensus 72 ~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~ 103 (217)
.+.|-.+.|.|.--|......++||+|++..+
T Consensus 59 vI~g~~GSg~I~lNGaAArl~~~GD~vII~sy 90 (116)
T PF02261_consen 59 VIPGERGSGVICLNGAAARLVQVGDRVIIMSY 90 (116)
T ss_dssp EEEESTTTT-EEEEGGGGGCS-TT-EEEEEEE
T ss_pred EEEccCCCcEEEECCHHHhccCCCCEEEEEEc
Confidence 57888999999999999888999999998765
No 145
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=51.72 E-value=4.2 Score=24.36 Aligned_cols=13 Identities=31% Similarity=0.958 Sum_probs=7.3
Q ss_pred cCCCCCccccCCC
Q 027867 104 ADCTECVGCRSKK 116 (217)
Q Consensus 104 ~~c~~c~~c~~g~ 116 (217)
-+|++|.+|+.|-
T Consensus 14 ESCGkC~PCR~Gt 26 (46)
T PF10589_consen 14 ESCGKCTPCREGT 26 (46)
T ss_dssp H--S--HHHHCCC
T ss_pred cCCCCCCCcHhHH
Confidence 4799999999874
No 146
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=51.46 E-value=20 Score=32.17 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=20.8
Q ss_pred hHHHHHHHhcCCC-CCCEEEEEcCChhccC
Q 027867 188 TGVGAAWRTANVE-VGSTVVIFGLGSIGLA 216 (217)
Q Consensus 188 ta~~a~~~~~~~~-~g~~VlI~GaG~vG~~ 216 (217)
..|.++.+..++. .|++|+|+|.|.+|..
T Consensus 197 s~~~ai~rat~~~l~Gk~VlViG~G~IG~~ 226 (425)
T PRK05476 197 SLLDGIKRATNVLIAGKVVVVAGYGDVGKG 226 (425)
T ss_pred hhHHHHHHhccCCCCCCEEEEECCCHHHHH
Confidence 3455555544554 8999999999999853
No 147
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=50.16 E-value=15 Score=27.01 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=28.5
Q ss_pred eeeeecceEEEEEeCCCCCCCCCCCEEeeecc
Q 027867 72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFL 103 (217)
Q Consensus 72 ~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~ 103 (217)
.+.|-.+.|+|.--|......++||+|++..+
T Consensus 59 vI~G~~GSg~I~lNGAAArl~~~GD~VII~sy 90 (126)
T TIGR00223 59 AIAGKRGSRIICVNGAAARCVSVGDIVIIASY 90 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 57899999999999998888999999998765
No 148
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=49.59 E-value=15 Score=27.06 Aligned_cols=33 Identities=33% Similarity=0.321 Sum_probs=28.8
Q ss_pred eeeeecceEEEEEeCCCCCCCCCCCEEeeeccc
Q 027867 72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLA 104 (217)
Q Consensus 72 ~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~ 104 (217)
.++|-.+.|+|.--|......++||+|++..+.
T Consensus 59 vI~g~~GSg~I~lNGAAAr~~~~GD~vII~ay~ 91 (126)
T PRK05449 59 VIAGERGSGVICLNGAAARLVQVGDLVIIAAYA 91 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECc
Confidence 578888999999999888889999999987763
No 149
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=46.88 E-value=23 Score=23.85 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCCCCEEEEEcC
Q 027867 189 GVGAAWRTANVEVGSTVVIFGL 210 (217)
Q Consensus 189 a~~a~~~~~~~~~g~~VlI~Ga 210 (217)
++..+.+...+++||+|++.+.
T Consensus 56 ~L~~~~~~g~~~~Gd~vl~~~~ 77 (90)
T PF08541_consen 56 NLADALEEGRIKPGDRVLLVGF 77 (90)
T ss_dssp HHHHHHHTTSSCTTEEEEEEEE
T ss_pred HHHHHHHcCCCCCCCEEEEEEE
Confidence 3444567778999999999965
No 150
>PRK08324 short chain dehydrogenase; Validated
Probab=45.49 E-value=9.5 Score=36.20 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=31.5
Q ss_pred eeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEEcC-ChhccC
Q 027867 155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 155 ~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
++++|..+++..++.+ +..+.+++..-.. ...+..+|++|||+|+ |++|..
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~ 437 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKA 437 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHH
Confidence 5667777776666666 5555555532110 0122346899999998 999864
No 151
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=41.37 E-value=43 Score=28.36 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=38.3
Q ss_pred CCCCCCcccccCCCceeeecccc--ceeeeeEEeccccEEEcCCCCCccccccccchhhhHHHHHHHhcCCCCCCEEEEE
Q 027867 131 MPRDQTSRFKDLRGETIHHFVSV--SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF 208 (217)
Q Consensus 131 ~~~~G~~~~~~~~~~~~~~~~~~--g~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~ 208 (217)
..+.|+-++.++-|+++++.... |.|. |+.-|.--++.+ .++-...-++.-- .+ .+..+.+++||++|+=.
T Consensus 40 ~~~yGa~~h~~iIGK~~G~~v~sskG~~v-ylL~PTpELWTl--~LphRTQI~Yt~D--ia--~I~~~L~i~PGsvV~Es 112 (314)
T KOG2915|consen 40 QTRYGALPHSDIIGKPYGSKVASSKGKFV-YLLQPTPELWTL--ALPHRTQILYTPD--IA--MILSMLEIRPGSVVLES 112 (314)
T ss_pred eccccccchhheecCCccceeeecCCcEE-EEecCChHHhhh--hccCcceEEeccc--HH--HHHHHhcCCCCCEEEec
Confidence 34566677777888887766543 2221 233232222221 1222222222211 11 25677899999999988
Q ss_pred cCC
Q 027867 209 GLG 211 (217)
Q Consensus 209 GaG 211 (217)
|.|
T Consensus 113 GTG 115 (314)
T KOG2915|consen 113 GTG 115 (314)
T ss_pred CCC
Confidence 764
No 152
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=37.73 E-value=27 Score=25.62 Aligned_cols=33 Identities=33% Similarity=0.311 Sum_probs=27.7
Q ss_pred eeeeecceEEEEEeCCCCCCCCCCCEEeeeccc
Q 027867 72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLA 104 (217)
Q Consensus 72 ~ilG~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~ 104 (217)
.+.|-.+.|+|.--|....-.++||+|++..+.
T Consensus 58 vI~g~rGSg~I~lNGAAArl~~~GD~VII~sy~ 90 (126)
T COG0853 58 VIAGERGSGVICLNGAAARLVQVGDLVIIMSYA 90 (126)
T ss_pred EEEccCCCcEEEechHHHhhCCCCCEEEEEEcc
Confidence 577888899999888877779999999987654
No 153
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=37.21 E-value=46 Score=25.69 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=22.6
Q ss_pred cccccchhhhHHHHHHHhcCCCCCCEEEEEcCCh-hcc
Q 027867 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IGL 215 (217)
Q Consensus 179 aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~GaG~-vG~ 215 (217)
....++...++...+.+...--.|.+|||+|+|. +|.
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~ 58 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGK 58 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHH
Confidence 3445555455544333333346789999999986 465
No 154
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=33.29 E-value=25 Score=32.34 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.0
Q ss_pred CCCCEEEEEcCChhccCC
Q 027867 200 EVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 200 ~~g~~VlI~GaG~vG~~a 217 (217)
.++++|+|+|+|.+|+++
T Consensus 162 vp~akVlViGaG~iGl~A 179 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAA 179 (511)
T ss_pred CCCCEEEEECCCHHHHHH
Confidence 457899999999998753
No 155
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=32.72 E-value=25 Score=28.97 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=14.0
Q ss_pred hcCCCCCCEEEEEcCCh
Q 027867 196 TANVEVGSTVVIFGLGS 212 (217)
Q Consensus 196 ~~~~~~g~~VlI~GaG~ 212 (217)
.+.+++|++||.+|.|.
T Consensus 72 ~~~~~~g~~VLDiG~G~ 88 (272)
T PRK11873 72 LAELKPGETVLDLGSGG 88 (272)
T ss_pred hccCCCCCEEEEeCCCC
Confidence 35788999999998864
No 156
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=32.67 E-value=29 Score=23.33 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=11.8
Q ss_pred CCCCCCEEEEEcC-ChhccC
Q 027867 198 NVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 198 ~~~~g~~VlI~Ga-G~vG~~ 216 (217)
.+.-..+|||+|+ ++.|++
T Consensus 35 ~~~GpK~VLViGaStGyGLA 54 (78)
T PF12242_consen 35 KINGPKKVLVIGASTGYGLA 54 (78)
T ss_dssp --TS-SEEEEES-SSHHHHH
T ss_pred CCCCCceEEEEecCCcccHH
Confidence 3433379999998 788875
No 157
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=31.90 E-value=50 Score=29.45 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=20.3
Q ss_pred HHHHHHHhcC-CCCCCEEEEEcCChhccC
Q 027867 189 GVGAAWRTAN-VEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 189 a~~a~~~~~~-~~~g~~VlI~GaG~vG~~ 216 (217)
.+.++.+..+ ...|++|+|+|.|.+|..
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~ 209 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGWCGKG 209 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECCCHHHHH
Confidence 3444555545 368999999999999863
No 158
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=31.35 E-value=43 Score=28.05 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=14.2
Q ss_pred cCCCCCCEEEEEcCChhccC
Q 027867 197 ANVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 197 ~~~~~g~~VlI~GaG~vG~~ 216 (217)
.+...+.+++|+|+|+.+.+
T Consensus 117 ~~~~~~~~vlilGaGGaarA 136 (272)
T PRK12550 117 YQVPPDLVVALRGSGGMAKA 136 (272)
T ss_pred cCCCCCCeEEEECCcHHHHH
Confidence 34445668999999877654
No 159
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=29.75 E-value=55 Score=22.89 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=10.4
Q ss_pred CCCCCCEEeeec
Q 027867 91 GVVEGDVVIPHF 102 (217)
Q Consensus 91 ~~~vGd~V~~~~ 102 (217)
.|++||+|++.+
T Consensus 76 ~Lk~GD~V~ll~ 87 (100)
T PF10844_consen 76 GLKVGDKVLLLR 87 (100)
T ss_pred CCcCCCEEEEEE
Confidence 699999999865
No 160
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=29.11 E-value=1.3e+02 Score=25.90 Aligned_cols=19 Identities=11% Similarity=-0.274 Sum_probs=15.3
Q ss_pred CCCCCCCEEeeecccCCCC
Q 027867 90 DGVVEGDVVIPHFLADCTE 108 (217)
Q Consensus 90 ~~~~vGd~V~~~~~~~c~~ 108 (217)
..+++||+|.+.+...|..
T Consensus 315 ~~~~vGd~v~~~p~h~c~t 333 (358)
T cd06819 315 APLKIGDRLELVPGHCDPT 333 (358)
T ss_pred CCCCCCCEEEEECCCcCcc
Confidence 4699999999988876653
No 161
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=26.05 E-value=51 Score=27.72 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=12.9
Q ss_pred CCCCEEEEEcCChhccC
Q 027867 200 EVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 200 ~~g~~VlI~GaG~vG~~ 216 (217)
.++.++||+|+|++|.+
T Consensus 124 ~~~k~vlI~GAGGagrA 140 (289)
T PRK12548 124 VKGKKLTVIGAGGAATA 140 (289)
T ss_pred cCCCEEEEECCcHHHHH
Confidence 35678999999877754
No 162
>PLN02494 adenosylhomocysteinase
Probab=24.74 E-value=56 Score=29.79 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=20.8
Q ss_pred HHHHHHhcCC-CCCCEEEEEcCChhccC
Q 027867 190 VGAAWRTANV-EVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 190 ~~a~~~~~~~-~~g~~VlI~GaG~vG~~ 216 (217)
+.++.+..++ ..|++|+|+|.|.+|..
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~ 268 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKG 268 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHH
Confidence 5556666564 67999999999999863
No 163
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=24.34 E-value=35 Score=28.77 Aligned_cols=16 Identities=38% Similarity=0.870 Sum_probs=13.7
Q ss_pred CCCEEEEEcCChhccC
Q 027867 201 VGSTVVIFGLGSIGLA 216 (217)
Q Consensus 201 ~g~~VlI~GaG~vG~~ 216 (217)
.|.+|+|+|.|.+|.+
T Consensus 150 ~gk~v~IiG~G~iG~a 165 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMT 165 (287)
T ss_pred CCCEEEEEcChHHHHH
Confidence 5789999999998864
No 164
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=23.62 E-value=66 Score=28.74 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.8
Q ss_pred CCCCCCEEEEEcCChhccC
Q 027867 198 NVEVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~ 216 (217)
.--.+.+|||+|+|.+|.+
T Consensus 177 ~~l~~kkvlviGaG~~a~~ 195 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGEL 195 (414)
T ss_pred cCccCCEEEEEcCcHHHHH
Confidence 3346789999999988754
No 165
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=23.59 E-value=60 Score=27.27 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=12.8
Q ss_pred CCCCEEEEEcCChhccC
Q 027867 200 EVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 200 ~~g~~VlI~GaG~vG~~ 216 (217)
..+.+|+|+|+|++|.+
T Consensus 125 ~~~k~vlIlGaGGaara 141 (284)
T PRK12549 125 ASLERVVQLGAGGAGAA 141 (284)
T ss_pred ccCCEEEEECCcHHHHH
Confidence 34678999999887754
No 166
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=23.21 E-value=39 Score=30.50 Aligned_cols=16 Identities=44% Similarity=0.806 Sum_probs=14.1
Q ss_pred CCCEEEEEcCChhccC
Q 027867 201 VGSTVVIFGLGSIGLA 216 (217)
Q Consensus 201 ~g~~VlI~GaG~vG~~ 216 (217)
.+++|+|+|+|+.|+.
T Consensus 140 ~~~~V~IIG~GpaGl~ 155 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLA 155 (467)
T ss_pred CCCeEEEECCCHHHHH
Confidence 5789999999999875
No 167
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=22.99 E-value=1.3e+02 Score=25.16 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=10.9
Q ss_pred CCCCCEEEEEcCCh
Q 027867 199 VEVGSTVVIFGLGS 212 (217)
Q Consensus 199 ~~~g~~VlI~GaG~ 212 (217)
.+++++||-+|.|.
T Consensus 157 ~~~g~~VLDvGcGs 170 (288)
T TIGR00406 157 DLKDKNVIDVGCGS 170 (288)
T ss_pred cCCCCEEEEeCCCh
Confidence 45789999998754
No 168
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=22.93 E-value=52 Score=22.73 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=17.0
Q ss_pred ecceEEEEEeCCCCCCCCCCCEEeeecccCCC
Q 027867 76 HEAIGVVESVGENVDGVVEGDVVIPHFLADCT 107 (217)
Q Consensus 76 ~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~ 107 (217)
.|=-|.|.-.+. ...+++||+|.+.|...|.
T Consensus 52 seEHg~l~~~~~-~~~~~vGd~v~iiP~H~C~ 82 (94)
T PF14031_consen 52 SEEHGILRLPDG-ADRLKVGDKVEIIPNHCCP 82 (94)
T ss_dssp -SS-EEEE-STT-GCGT-TT-EEEEEESSHHH
T ss_pred ecceeEEECCCC-CCCCCCCCEEEEECCccch
Confidence 344455554433 3459999999998876654
No 169
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=22.76 E-value=99 Score=24.76 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=13.6
Q ss_pred HHHhcCCCCCCEEEEEcCC
Q 027867 193 AWRTANVEVGSTVVIFGLG 211 (217)
Q Consensus 193 ~~~~~~~~~g~~VlI~GaG 211 (217)
+++...+++|++||-+|+|
T Consensus 64 ~l~~L~l~pg~~VLeIGtG 82 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTG 82 (209)
T ss_dssp HHHHTTC-TT-EEEEES-T
T ss_pred HHHHHhcCCCCEEEEecCC
Confidence 5677889999999999975
No 170
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=22.21 E-value=64 Score=27.17 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=12.5
Q ss_pred CCCCEEEEEcCChhccC
Q 027867 200 EVGSTVVIFGLGSIGLA 216 (217)
Q Consensus 200 ~~g~~VlI~GaG~vG~~ 216 (217)
..+.+|||+|+|+.+.+
T Consensus 125 ~~~k~vlilGaGGaarA 141 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNA 141 (283)
T ss_pred cCCCeEEEECCcHHHHH
Confidence 34678999999877653
No 171
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=22.19 E-value=41 Score=31.78 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=14.9
Q ss_pred CCCCEEEEEcCChhccCC
Q 027867 200 EVGSTVVIFGLGSIGLAV 217 (217)
Q Consensus 200 ~~g~~VlI~GaG~vG~~a 217 (217)
..+.+|+|+|+|+.|+.|
T Consensus 325 ~~~~~VaIIGaGpAGLsa 342 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLAC 342 (654)
T ss_pred cCCCEEEEECCCHHHHHH
Confidence 358899999999999753
No 172
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=22.04 E-value=95 Score=26.23 Aligned_cols=16 Identities=38% Similarity=0.875 Sum_probs=13.9
Q ss_pred CCCEEEEEcCChhccC
Q 027867 201 VGSTVVIFGLGSIGLA 216 (217)
Q Consensus 201 ~g~~VlI~GaG~vG~~ 216 (217)
.+.+|+|+|.|.+|+.
T Consensus 151 ~g~kvlViG~G~iG~~ 166 (296)
T PRK08306 151 HGSNVLVLGFGRTGMT 166 (296)
T ss_pred CCCEEEEECCcHHHHH
Confidence 6899999999998864
No 173
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=21.83 E-value=60 Score=30.39 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=17.7
Q ss_pred HhcCCCCCCEEEEEcC-ChhccC
Q 027867 195 RTANVEVGSTVVIFGL-GSIGLA 216 (217)
Q Consensus 195 ~~~~~~~g~~VlI~Ga-G~vG~~ 216 (217)
...+.+.|.+|||+|+ |.+|..
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~a 95 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSR 95 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHH
Confidence 3456778999999998 999864
No 174
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=21.35 E-value=60 Score=30.27 Aligned_cols=17 Identities=47% Similarity=0.659 Sum_probs=14.0
Q ss_pred CCCCCEEEEEcC-Chhcc
Q 027867 199 VEVGSTVVIFGL-GSIGL 215 (217)
Q Consensus 199 ~~~g~~VlI~Ga-G~vG~ 215 (217)
.-.|.+|||+|+ |++|.
T Consensus 247 ~~~gK~vLVTGagGSiGs 264 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGS 264 (588)
T ss_pred HcCCCEEEEeCCCCcHHH
Confidence 346899999998 88884
No 175
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.48 E-value=74 Score=27.38 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=14.0
Q ss_pred CCCCCCEEEEEcCC-hhc
Q 027867 198 NVEVGSTVVIFGLG-SIG 214 (217)
Q Consensus 198 ~~~~g~~VlI~GaG-~vG 214 (217)
+.+|||.|+|+|.| .+|
T Consensus 348 ~~~pgDsVlVVGvGNTvG 365 (368)
T COG4046 348 NEAPGDSVLVVGVGNTVG 365 (368)
T ss_pred CCCCCCeEEEEecCCcCC
Confidence 47899999999986 555
Done!