Query 027870
Match_columns 217
No_of_seqs 248 out of 973
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2107 Uncharacterized conser 100.0 3.6E-65 7.7E-70 422.2 11.9 177 32-208 1-178 (179)
2 PF03079 ARD: ARD/ARD' family; 100.0 3.7E-47 8E-52 314.9 11.7 155 34-188 1-157 (157)
3 COG1791 Uncharacterized conser 100.0 3.8E-43 8.2E-48 292.6 14.4 168 32-208 1-180 (181)
4 PF07883 Cupin_2: Cupin domain 99.1 3.5E-10 7.6E-15 79.1 7.4 61 115-180 10-71 (71)
5 COG1917 Uncharacterized conser 99.0 8.2E-10 1.8E-14 87.2 8.2 65 113-182 53-118 (131)
6 COG0662 {ManC} Mannose-6-phosp 99.0 2.2E-09 4.7E-14 85.4 8.4 61 117-182 50-111 (127)
7 PF02311 AraC_binding: AraC-li 98.9 1.1E-08 2.3E-13 77.6 8.0 61 114-179 14-74 (136)
8 PRK04190 glucose-6-phosphate i 98.8 4.1E-08 8.9E-13 84.1 11.4 87 93-183 68-157 (191)
9 smart00835 Cupin_1 Cupin. This 98.8 4.5E-08 9.8E-13 79.0 10.5 69 115-183 42-112 (146)
10 PF00190 Cupin_1: Cupin; Inte 98.7 6.7E-08 1.5E-12 77.8 9.5 70 115-184 46-123 (144)
11 TIGR03404 bicupin_oxalic bicup 98.7 1E-07 2.2E-12 88.7 10.6 70 114-183 256-326 (367)
12 TIGR03214 ura-cupin putative a 98.7 8E-08 1.7E-12 85.3 9.3 55 118-177 195-249 (260)
13 PRK09943 DNA-binding transcrip 98.6 1.8E-07 3.8E-12 78.3 8.6 60 117-181 122-181 (185)
14 PRK13290 ectC L-ectoine syntha 98.6 2.3E-07 5.1E-12 74.3 8.5 60 116-182 48-109 (125)
15 TIGR03037 anthran_nbaC 3-hydro 98.6 2.3E-07 5.1E-12 77.5 8.0 59 116-175 41-99 (159)
16 PRK13264 3-hydroxyanthranilate 98.5 3.2E-07 7E-12 77.9 7.6 57 115-172 46-102 (177)
17 TIGR03404 bicupin_oxalic bicup 98.5 1.1E-06 2.4E-11 81.9 10.3 67 115-182 79-145 (367)
18 COG2140 Thermophilic glucose-6 98.4 1.3E-06 2.8E-11 75.9 9.6 69 116-184 93-164 (209)
19 PRK13500 transcriptional activ 98.4 5.8E-07 1.3E-11 80.7 7.0 57 115-176 60-116 (312)
20 PF06560 GPI: Glucose-6-phosph 98.4 2.4E-06 5.3E-11 72.8 9.5 90 88-183 46-147 (182)
21 PRK13501 transcriptional activ 98.4 8E-07 1.7E-11 78.3 6.5 51 116-171 31-81 (290)
22 PRK11171 hypothetical protein; 98.3 2.4E-06 5.3E-11 76.1 8.9 54 119-177 201-254 (266)
23 PRK10371 DNA-binding transcrip 98.3 1.1E-06 2.4E-11 78.8 6.7 54 115-173 38-91 (302)
24 PRK10296 DNA-binding transcrip 98.3 1.9E-06 4.2E-11 75.2 7.9 50 114-168 34-83 (278)
25 COG3837 Uncharacterized conser 98.3 2.4E-06 5.2E-11 71.3 7.5 65 116-185 56-123 (161)
26 TIGR01479 GMP_PMI mannose-1-ph 98.3 4E-06 8.6E-11 80.0 9.8 63 116-183 389-452 (468)
27 PRK13503 transcriptional activ 98.3 1E-06 2.2E-11 76.4 5.2 53 114-171 26-78 (278)
28 PRK13502 transcriptional activ 98.3 2.3E-06 5E-11 74.7 6.9 52 116-172 31-82 (282)
29 PRK15457 ethanolamine utilizat 98.2 4.1E-06 8.9E-11 73.8 7.6 45 119-168 171-215 (233)
30 TIGR02297 HpaA 4-hydroxyphenyl 98.2 3.1E-06 6.8E-11 73.8 6.8 59 116-179 36-95 (287)
31 PRK15460 cpsB mannose-1-phosph 98.2 1.1E-05 2.3E-10 77.7 9.9 61 117-182 399-460 (478)
32 PLN00212 glutelin; Provisional 98.1 1E-05 2.3E-10 78.1 9.0 70 113-182 90-184 (493)
33 COG4101 Predicted mannose-6-ph 98.1 2.6E-05 5.7E-10 62.9 8.5 76 94-181 47-123 (142)
34 TIGR03214 ura-cupin putative a 98.0 3.8E-05 8.2E-10 68.3 9.8 63 118-185 74-140 (260)
35 PRK11171 hypothetical protein; 98.0 3E-05 6.6E-10 69.1 8.8 53 122-179 82-134 (266)
36 PF01050 MannoseP_isomer: Mann 98.0 4.3E-05 9.4E-10 63.2 9.1 79 89-183 60-139 (151)
37 PF02041 Auxin_BP: Auxin bindi 98.0 4.3E-05 9.3E-10 63.7 8.6 77 115-191 56-137 (167)
38 COG4297 Uncharacterized protei 97.8 0.00015 3.3E-09 59.8 9.4 111 81-209 35-147 (163)
39 COG3435 Gentisate 1,2-dioxygen 97.6 0.00011 2.3E-09 67.4 5.9 82 114-199 103-198 (351)
40 TIGR02272 gentisate_1_2 gentis 97.6 0.00016 3.5E-09 67.0 6.8 56 116-176 94-150 (335)
41 PLN00212 glutelin; Provisional 97.6 0.00044 9.5E-09 67.1 9.8 71 113-184 358-430 (493)
42 TIGR02451 anti_sig_ChrR anti-s 97.5 0.00019 4.1E-09 62.3 5.9 72 93-183 127-198 (215)
43 PF12973 Cupin_7: ChrR Cupin-l 97.5 0.00045 9.8E-09 51.6 6.6 59 94-171 25-83 (91)
44 PF05899 Cupin_3: Protein of u 97.4 0.00041 8.8E-09 50.5 5.7 44 123-170 25-68 (74)
45 PF06249 EutQ: Ethanolamine ut 97.4 0.00047 1E-08 57.4 6.7 57 122-187 94-151 (152)
46 TIGR02272 gentisate_1_2 gentis 97.3 0.00059 1.3E-08 63.2 7.1 87 80-171 215-313 (335)
47 PRK10572 DNA-binding transcrip 97.2 0.0011 2.4E-08 58.2 7.0 51 116-171 42-92 (290)
48 PF12852 Cupin_6: Cupin 97.0 0.0014 3E-08 54.4 5.8 45 124-171 36-80 (186)
49 COG4766 EutQ Ethanolamine util 97.0 0.0025 5.3E-08 53.5 7.1 72 94-171 88-161 (176)
50 PF05523 FdtA: WxcM-like, C-te 96.9 0.0046 9.9E-08 49.7 7.5 57 116-173 46-104 (131)
51 PF06052 3-HAO: 3-hydroxyanthr 96.9 0.0052 1.1E-07 51.1 7.8 54 116-170 46-99 (151)
52 COG3450 Predicted enzyme of th 96.5 0.0054 1.2E-07 49.0 5.3 48 118-169 57-105 (116)
53 PF04209 HgmA: homogentisate 1 96.4 0.0079 1.7E-07 57.5 6.8 57 120-181 143-199 (424)
54 TIGR01015 hmgA homogentisate 1 96.1 0.024 5.2E-07 54.2 7.9 57 120-181 145-201 (429)
55 PF11699 CENP-C_C: Mif2/CENP-C 95.8 0.048 1E-06 41.2 7.2 69 92-174 11-79 (85)
56 PRK09685 DNA-binding transcrip 95.8 0.031 6.6E-07 49.2 7.1 50 124-178 72-121 (302)
57 PRK05341 homogentisate 1,2-dio 95.8 0.036 7.8E-07 53.2 7.9 57 120-181 151-208 (438)
58 PLN02658 homogentisate 1,2-dio 95.5 0.054 1.2E-06 52.0 7.8 57 120-181 144-201 (435)
59 PF02373 JmjC: JmjC domain, hy 95.5 0.033 7.2E-07 41.9 5.2 31 142-172 77-107 (114)
60 PF14525 AraC_binding_2: AraC- 95.4 0.068 1.5E-06 42.2 7.1 52 123-179 55-106 (172)
61 COG3435 Gentisate 1,2-dioxygen 95.2 0.038 8.2E-07 51.1 5.5 100 79-188 225-339 (351)
62 PF06339 Ectoine_synth: Ectoin 94.8 0.17 3.7E-06 41.0 7.6 57 122-183 54-110 (126)
63 PF13621 Cupin_8: Cupin-like d 94.3 0.14 2.9E-06 43.2 6.4 40 144-183 207-248 (251)
64 COG3257 GlxB Uncharacterized p 94.2 0.17 3.8E-06 44.9 6.9 49 124-177 84-134 (264)
65 PF00908 dTDP_sugar_isom: dTDP 93.7 0.42 9.1E-06 40.5 8.2 60 113-172 53-124 (176)
66 TIGR01221 rmlC dTDP-4-dehydror 93.6 0.55 1.2E-05 39.8 8.7 60 113-172 54-124 (176)
67 COG3257 GlxB Uncharacterized p 93.4 0.14 3.1E-06 45.4 5.1 53 120-177 200-252 (264)
68 PF04962 KduI: KduI/IolB famil 93.2 0.14 3.1E-06 45.9 4.9 72 116-192 166-256 (261)
69 KOG2757 Mannose-6-phosphate is 92.0 0.36 7.8E-06 45.7 6.0 56 122-183 352-408 (411)
70 KOG3995 3-hydroxyanthranilate 91.9 0.23 5.1E-06 44.0 4.3 66 117-183 47-124 (279)
71 PF02678 Pirin: Pirin; InterP 91.6 0.9 2E-05 35.6 6.9 63 114-180 40-106 (107)
72 PF08007 Cupin_4: Cupin superf 91.0 1.2 2.6E-05 40.6 8.2 55 116-170 128-200 (319)
73 COG3508 HmgA Homogentisate 1,2 90.7 1 2.2E-05 42.6 7.5 46 122-172 145-190 (427)
74 COG1898 RfbC dTDP-4-dehydrorha 90.0 2.3 5E-05 36.2 8.5 61 113-173 55-125 (173)
75 PF14499 DUF4437: Domain of un 89.7 0.34 7.4E-06 43.4 3.4 52 116-171 49-100 (251)
76 PF07385 DUF1498: Protein of u 89.6 0.8 1.7E-05 40.5 5.5 26 147-172 155-180 (225)
77 TIGR00218 manA mannose-6-phosp 87.5 1.6 3.5E-05 39.4 6.3 39 122-165 252-290 (302)
78 PRK15131 mannose-6-phosphate i 86.4 1.8 3.9E-05 41.0 6.2 40 122-166 338-377 (389)
79 PF13759 2OG-FeII_Oxy_5: Putat 85.4 2.4 5.3E-05 31.8 5.4 29 143-171 63-91 (101)
80 PRK12335 tellurite resistance 85.3 5.4 0.00012 35.5 8.4 75 110-184 18-96 (287)
81 COG3822 ABC-type sugar transpo 85.1 1.6 3.5E-05 38.1 4.8 27 146-172 153-179 (225)
82 COG1482 ManA Phosphomannose is 84.6 2.6 5.6E-05 39.1 6.1 82 83-169 205-301 (312)
83 COG1482 ManA Phosphomannose is 84.3 0.8 1.7E-05 42.4 2.7 23 147-169 159-181 (312)
84 TIGR00218 manA mannose-6-phosp 84.2 0.53 1.2E-05 42.5 1.5 20 147-166 152-171 (302)
85 COG1741 Pirin-related protein 80.8 6.3 0.00014 35.8 7.0 68 113-184 54-126 (276)
86 PF09313 DUF1971: Domain of un 79.6 7.8 0.00017 29.0 6.1 57 115-171 15-75 (82)
87 PRK15131 mannose-6-phosphate i 77.9 2.6 5.6E-05 39.9 3.8 24 147-170 238-261 (389)
88 PRK00924 5-keto-4-deoxyuronate 74.5 8 0.00017 35.3 5.8 55 116-170 191-249 (276)
89 PF06719 AraC_N: AraC-type tra 72.2 26 0.00056 28.5 7.9 55 123-182 23-80 (155)
90 PRK15186 AraC family transcrip 67.6 14 0.00031 33.4 5.9 44 125-172 40-83 (291)
91 COG2850 Uncharacterized conser 66.5 3.2 6.9E-05 39.4 1.5 85 80-171 100-204 (383)
92 PF14499 DUF4437: Domain of un 66.0 4 8.7E-05 36.7 2.0 61 116-179 184-244 (251)
93 PLN02288 mannose-6-phosphate i 65.8 10 0.00022 36.2 4.7 40 121-163 352-391 (394)
94 PF11142 DUF2917: Protein of u 62.9 17 0.00038 25.6 4.4 40 126-168 19-58 (63)
95 PHA02890 hypothetical protein; 62.5 43 0.00093 30.6 7.8 56 127-184 96-151 (278)
96 cd00038 CAP_ED effector domain 62.1 28 0.00061 24.3 5.5 37 123-159 35-72 (115)
97 PF06865 DUF1255: Protein of u 58.9 49 0.0011 25.6 6.6 46 123-171 41-86 (94)
98 PRK09391 fixK transcriptional 58.8 61 0.0013 27.5 8.0 55 123-177 56-111 (230)
99 PRK11753 DNA-binding transcrip 58.7 67 0.0015 26.2 8.0 36 123-158 38-74 (211)
100 PF06172 Cupin_5: Cupin superf 58.2 96 0.0021 25.3 8.6 59 113-171 51-116 (139)
101 PHA02984 hypothetical protein; 56.7 62 0.0014 29.7 7.8 58 126-184 96-154 (286)
102 PLN02288 mannose-6-phosphate i 55.8 9.6 0.00021 36.3 2.7 24 147-170 252-275 (394)
103 KOG3706 Uncharacterized conser 55.0 4.7 0.0001 39.8 0.5 47 134-180 369-415 (629)
104 PRK10579 hypothetical protein; 53.9 75 0.0016 24.6 6.8 46 123-171 41-86 (94)
105 PF05962 HutD: HutD; InterPro 53.6 19 0.00041 30.4 3.9 50 122-178 134-183 (184)
106 PF05721 PhyH: Phytanoyl-CoA d 53.5 14 0.0003 29.4 2.9 29 143-171 177-205 (211)
107 PRK13918 CRP/FNR family transc 53.0 64 0.0014 26.2 6.9 36 124-159 27-63 (202)
108 PF00027 cNMP_binding: Cyclic 52.9 53 0.0011 22.4 5.6 38 123-160 17-55 (91)
109 cd06919 Asp_decarbox Aspartate 51.8 8.8 0.00019 30.6 1.4 30 127-160 56-88 (111)
110 PF05726 Pirin_C: Pirin C-term 48.5 47 0.001 25.1 5.1 53 123-184 20-72 (104)
111 PRK05449 aspartate alpha-decar 46.4 12 0.00025 30.5 1.4 30 127-160 57-89 (126)
112 TIGR00223 panD L-aspartate-alp 46.3 12 0.00025 30.6 1.4 30 127-160 57-89 (126)
113 smart00100 cNMP Cyclic nucleot 44.9 72 0.0016 22.2 5.3 37 123-159 35-72 (120)
114 TIGR02466 conserved hypothetic 42.9 79 0.0017 27.3 6.1 87 81-169 75-185 (201)
115 PRK05573 rplU 50S ribosomal pr 39.7 89 0.0019 24.2 5.4 49 135-192 4-52 (103)
116 PRK09392 ftrB transcriptional 38.0 87 0.0019 26.3 5.6 57 123-179 48-107 (236)
117 PRK00924 5-keto-4-deoxyuronate 37.6 54 0.0012 30.0 4.4 41 122-167 72-114 (276)
118 KOG1417 Homogentisate 1,2-diox 37.6 1.2E+02 0.0027 28.5 6.8 35 147-181 174-208 (446)
119 PLN02156 gibberellin 2-beta-di 36.0 1.2E+02 0.0027 27.9 6.7 67 117-183 198-278 (335)
120 PF13464 DUF4115: Domain of un 35.6 1.6E+02 0.0035 20.9 7.2 45 130-174 5-50 (77)
121 PRK10402 DNA-binding transcrip 35.2 1.7E+02 0.0037 24.6 7.0 37 123-159 49-86 (226)
122 PRK10202 ebgC cryptic beta-D-g 35.2 66 0.0014 26.3 4.3 32 147-180 107-138 (149)
123 PF07653 SH3_2: Variant SH3 do 34.5 52 0.0011 21.8 3.0 35 147-189 15-49 (55)
124 cd00214 Calpain_III Calpain, s 33.8 83 0.0018 25.3 4.6 33 147-184 112-144 (150)
125 PF01238 PMI_typeI: Phosphoman 31.7 27 0.00058 32.8 1.5 24 147-170 251-274 (373)
126 PF00829 Ribosomal_L21p: Ribos 31.3 34 0.00074 26.1 1.8 49 135-193 4-53 (96)
127 COG0664 Crp cAMP-binding prote 30.8 99 0.0021 24.5 4.6 38 124-161 42-80 (214)
128 PLN02403 aminocyclopropanecarb 29.4 1.7E+02 0.0036 26.6 6.3 65 118-183 172-252 (303)
129 KOG0143 Iron/ascorbate family 29.3 2.1E+02 0.0046 26.3 7.0 51 133-184 213-276 (322)
130 PTZ00273 oxidase reductase; Pr 28.8 99 0.0021 28.0 4.7 64 118-182 197-275 (320)
131 PF13640 2OG-FeII_Oxy_3: 2OG-F 28.6 82 0.0018 22.8 3.5 20 150-169 66-86 (100)
132 TIGR03697 NtcA_cyano global ni 28.3 1.5E+02 0.0032 23.7 5.2 35 123-157 11-46 (193)
133 PF04962 KduI: KduI/IolB famil 28.2 1.7E+02 0.0037 26.2 6.0 48 120-171 44-99 (261)
134 PF04773 FecR: FecR protein; 27.9 2.2E+02 0.0049 20.1 6.4 58 123-182 38-95 (98)
135 cd00248 Mth938-like Mth938-lik 27.8 54 0.0012 25.3 2.5 27 132-166 6-32 (109)
136 PRK11161 fumarate/nitrate redu 27.5 2.7E+02 0.0058 23.2 6.9 36 123-158 55-91 (235)
137 COG0853 PanD Aspartate 1-decar 27.5 24 0.00053 28.7 0.4 26 131-160 63-88 (126)
138 PF02261 Asp_decarbox: Asparta 26.5 16 0.00035 29.3 -0.7 30 127-160 57-89 (116)
139 TIGR03805 beta_helix_1 paralle 26.1 38 0.00083 30.9 1.5 16 149-164 7-22 (314)
140 PLN02868 acyl-CoA thioesterase 25.7 1.5E+02 0.0033 27.7 5.5 36 123-158 49-84 (413)
141 KOG1029 Endocytic adaptor prot 24.7 39 0.00085 35.5 1.4 25 133-159 697-721 (1118)
142 cd05793 S1_IF1A S1_IF1A: Trans 24.6 1.3E+02 0.0027 22.1 3.8 13 147-159 36-48 (77)
143 KOG3416 Predicted nucleic acid 23.8 1.1E+02 0.0025 25.1 3.6 56 122-188 34-93 (134)
144 PF04074 DUF386: Domain of unk 23.7 1.4E+02 0.003 24.1 4.2 58 118-175 63-144 (153)
145 smart00720 calpain_III calpain 23.4 1.4E+02 0.0031 23.4 4.2 33 147-184 107-139 (143)
146 PLN02276 gibberellin 20-oxidas 23.3 2.5E+02 0.0055 26.0 6.4 68 117-185 224-305 (361)
147 PF06577 DUF1134: Protein of u 23.1 1.2E+02 0.0027 25.6 3.8 77 90-188 82-159 (160)
148 PF05995 CDO_I: Cysteine dioxy 23.0 4.4E+02 0.0095 21.8 9.1 70 114-183 86-165 (175)
149 smart00652 eIF1a eukaryotic tr 22.9 1.4E+02 0.0029 22.3 3.7 12 147-158 41-52 (83)
150 PRK15372 pathogenicity island 22.8 3E+02 0.0064 25.3 6.4 75 126-210 57-135 (292)
151 PHA00672 hypothetical protein 22.7 4.3E+02 0.0094 21.9 6.8 54 115-174 59-112 (152)
152 PF10983 DUF2793: Protein of u 22.7 2.1E+02 0.0045 21.6 4.7 42 151-193 29-75 (87)
153 COG0361 InfA Translation initi 22.5 1.6E+02 0.0034 21.9 3.9 12 147-158 44-55 (75)
154 TIGR03027 pepcterm_export puta 22.3 57 0.0012 26.7 1.7 16 147-162 149-164 (165)
155 COG3806 ChrR Transcriptional a 22.2 1.5E+02 0.0031 26.3 4.2 55 114-177 139-193 (216)
156 TIGR03096 nitroso_cyanin nitro 22.1 3.6E+02 0.0078 22.1 6.3 38 128-172 50-91 (135)
157 TIGR01762 chlorin-enz chlorina 21.9 1.7E+02 0.0037 26.3 4.9 42 144-185 207-252 (288)
158 COG0756 Dut dUTPase [Nucleotid 21.6 94 0.002 26.0 2.9 34 127-163 20-53 (148)
159 PRK05467 Fe(II)-dependent oxyg 21.5 2.2E+02 0.0048 25.1 5.3 25 146-170 141-165 (226)
160 PLN02485 oxidoreductase 21.2 3E+02 0.0066 25.0 6.4 66 116-182 205-286 (329)
161 COG3123 Uncharacterized protei 21.1 3.3E+02 0.007 21.0 5.4 44 123-169 41-84 (94)
162 TIGR00568 alkb DNA alkylation 20.5 1.6E+02 0.0034 24.7 4.1 41 126-166 124-166 (169)
163 PLN02515 naringenin,2-oxogluta 20.3 3.1E+02 0.0066 25.6 6.3 65 118-183 214-294 (358)
164 TIGR02408 ectoine_ThpD ectoine 20.3 1E+02 0.0022 27.3 3.0 36 145-180 210-248 (277)
165 PF12851 Tet_JBP: Oxygenase do 20.2 1.9E+02 0.0042 24.1 4.5 38 133-170 113-153 (171)
166 PF00054 Laminin_G_1: Laminin 20.0 4.1E+02 0.0089 20.4 6.5 57 118-179 15-71 (131)
No 1
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=3.6e-65 Score=422.17 Aligned_cols=177 Identities=66% Similarity=1.232 Sum_probs=173.6
Q ss_pred ceEEEEecCCC-CCCCCCCCCCCCCCCCHHHHhhcCeEEEEcCCCCCCChHHHHHHHHHcCCCeeeeeeeCccCccChHH
Q 027870 32 FNQAWFMDESS-QDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEE 110 (217)
Q Consensus 32 m~~aw~~d~~~-~d~~lph~~~p~~~vs~~~L~~~GV~~w~~~~~~~~~~~~l~~l~~e~Gy~~~Dvi~i~p~~~p~y~~ 110 (217)
||||||||+.. +|||+|||.+|++.||+++|+++||+||++++|+++.+++|++|++++||+.+|+++++++++|||++
T Consensus 1 m~qaw~mdd~~~~D~RlPhh~~p~~~vs~d~L~~lGVly~kld~D~~e~~~~L~~lr~e~~~~~~d~~~~~~e~~~nfde 80 (179)
T KOG2107|consen 1 MMQAWYMDDSPCEDQRLPHHKDPKKEVSLDELARLGVLYWKLDADNYELDEELDRLREERGYSYMDICTVCPETLPNFDE 80 (179)
T ss_pred CeeEEEcCCCCcccccCCCCCCCcccCCHHHHHhhCcEEEEecCchHHHHHHHHHHHHHcCCceeeEEEEchhhcccHHH
Confidence 89999999965 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCCceEEeC
Q 027870 111 KLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYN 190 (217)
Q Consensus 111 k~~~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~gW~~~~ 190 (217)
|++.||+||.|+++|||||++|+|||+|++++|+||||.|++||+|+||||++||||++++|+++|||||.++|.|+|+|
T Consensus 81 Kvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~p~wta~n 160 (179)
T KOG2107|consen 81 KVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGEPKWTAYN 160 (179)
T ss_pred HHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHhhcC
Q 027870 191 RPQEDHPARKEYIKGLTG 208 (217)
Q Consensus 191 r~~d~~~~R~~y~~~~~~ 208 (217)
||+|+.++|++||..+.+
T Consensus 161 R~~d~l~~r~~yl~~i~~ 178 (179)
T KOG2107|consen 161 RPHDELPARKQYLNFISQ 178 (179)
T ss_pred CccccchhHHHHHhhccc
Confidence 999999999999998864
No 2
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=100.00 E-value=3.7e-47 Score=314.90 Aligned_cols=155 Identities=57% Similarity=0.986 Sum_probs=134.7
Q ss_pred EEEEecCCC-CCCCCCCCCCCCCCCCHHHHhhcCeEEEEcCCCCCCChHHHHHHHHHcCCCeeee-eeeCccCccChHHH
Q 027870 34 QAWFMDESS-QDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDL-LDLCPEKVTNYEEK 111 (217)
Q Consensus 34 ~aw~~d~~~-~d~~lph~~~p~~~vs~~~L~~~GV~~w~~~~~~~~~~~~l~~l~~e~Gy~~~Dv-i~i~p~~~p~y~~k 111 (217)
||||||+.+ +|+++||+++|++++|..+|+++||.+|+++++..++...++.+++.++|...++ |+..+..+|+|+++
T Consensus 1 ~~~~~d~~~~~d~~~~~~~~p~~~~s~~~l~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~p~~~~~ 80 (157)
T PF03079_consen 1 RAWYYDEEDPGDQRLPHHSDPDKIVSLLQLAGLGVLYWKLDADDPEDAEELQIIRAYRNYIDRDIDVVSLHPDHPNYEAK 80 (157)
T ss_dssp EEEEB-S--S-STCCEEE-SCHHCHHHHHCCCTCEEEEE-SCGGTTS-HHHHHHHHCHCHHCCCCEEEESTTTSTCHHHH
T ss_pred CEEEECCCCcccCCCcccCCcccccCHHHhhCceEEEeecCCCccCCccHHHHHHHHcCCceEEEEEEecCCCCcchhHH
Confidence 699999976 7999999999999999999999999999999887777889999999999999887 55555557999999
Q ss_pred hcCccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCCceEE
Q 027870 112 LKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTA 188 (217)
Q Consensus 112 ~~~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~gW~~ 188 (217)
+++|+.||+|+++|||||++|+|+|+|++.++.|++|.|++||+|+||||++|||+++++++|+|||||+++|||+|
T Consensus 81 ~~~f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~~gWva 157 (157)
T PF03079_consen 81 LKKFFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDEPGWVA 157 (157)
T ss_dssp HHHHCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSCGGEES
T ss_pred hhhhheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=3.8e-43 Score=292.55 Aligned_cols=168 Identities=29% Similarity=0.538 Sum_probs=145.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCHHHHhhcCeEE--EEcCCCCC----------CChHHHHHHHHHcCCCeeeeee
Q 027870 32 FNQAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLY--WRLNPKNY----------ENDEELQKIREARGYSYMDLLD 99 (217)
Q Consensus 32 m~~aw~~d~~~~d~~lph~~~p~~~vs~~~L~~~GV~~--w~~~~~~~----------~~~~~l~~l~~e~Gy~~~Dvi~ 99 (217)
|++++.+|+. .. -.+++++ +.+|+++||.+ |.+.+... ....++++|++++||+++|+|+
T Consensus 1 Ms~l~I~d~~---~~---~~~~dei--a~~l~~i~v~~e~we~~~~~~~~~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvs 72 (181)
T COG1791 1 MSRLRIHDET---KI---ITNQDEI--APELSKIEVSFERWEATALIKHGAEKEHIIDAYETEIDRLIRERGYKNRDVVS 72 (181)
T ss_pred CceEEEecCc---cc---ccCHhHh--hhhcccceeEhhhhhhccccccCcchhhhHhhHHHHHHHHHHhhCCceeeEEE
Confidence 8889999887 00 1123334 45677777776 55332211 1257899999999999999999
Q ss_pred eCccCccChHHHhcCccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEE
Q 027870 100 LCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRL 179 (217)
Q Consensus 100 i~p~~~p~y~~k~~~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRl 179 (217)
|+|++ |++++++++|++||+|+++||||||+|.|+|++++.+|+|+.+.|++||+|+||+|++|||+++++++|+||||
T Consensus 73 v~~~~-pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRl 151 (181)
T COG1791 73 VSPSN-PKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRL 151 (181)
T ss_pred eCCCC-ccHHHHHHHHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEE
Confidence 99986 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCceEEeCCCCCCcHHHHHHHHhhcC
Q 027870 180 FVGEPVWTAYNRPQEDHPARKEYIKGLTG 208 (217)
Q Consensus 180 F~~~~gW~~~~r~~d~~~~R~~y~~~~~~ 208 (217)
|+.++||+|++|..|.+++|+.|++.+.+
T Consensus 152 F~~~~gWVa~ytg~di~~~~~~y~~~i~~ 180 (181)
T COG1791 152 FTEPEGWVAIYTGDDIADRFPKYIEEINQ 180 (181)
T ss_pred eeCCCCceeeecCchhHHHHHHHHHHhhc
Confidence 99999999999999999999999998764
No 4
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.10 E-value=3.5e-10 Score=79.12 Aligned_cols=61 Identities=30% Similarity=0.530 Sum_probs=55.6
Q ss_pred ccccccCCCc-eEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEE
Q 027870 115 FYTEHIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLF 180 (217)
Q Consensus 115 f~~eH~H~~d-EiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF 180 (217)
....|.|+.. |++||++|++.+.++++ ++.+++||.+.+|+|+.|++.+..+..++.+.+|
T Consensus 10 ~~~~h~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 10 SIPPHRHPGEDEFFYVLSGEGTLTVDGE-----RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEEEESSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred CCCCEECCCCCEEEEEEECCEEEEEccE-----EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 4678999977 99999999999999877 8999999999999999999999988888887765
No 5
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.04 E-value=8.2e-10 Score=87.22 Aligned_cols=65 Identities=29% Similarity=0.484 Sum_probs=55.9
Q ss_pred cCccccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcC
Q 027870 113 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVG 182 (217)
Q Consensus 113 ~~f~~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~ 182 (217)
+....+|+|+ .+++.||++|++++.++++ ...+++||+|+||+|+.||+.+.++.....|-++..
T Consensus 53 G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-----~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~~ 118 (131)
T COG1917 53 GAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-----KKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPL 118 (131)
T ss_pred CcccccccCCCcceEEEEEecEEEEEecCC-----ceEecCCCEEEECCCCeeeeccCCCCceeEEEEeee
Confidence 4467899998 8899999999999999977 899999999999999999999988776444555443
No 6
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=2.2e-09 Score=85.40 Aligned_cols=61 Identities=31% Similarity=0.454 Sum_probs=53.4
Q ss_pred ccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcC
Q 027870 117 TEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVG 182 (217)
Q Consensus 117 ~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~ 182 (217)
..|.|. .+|++||++|+|.+.++++ .+.+++||.++||+|+.|++.+.++.+++.+-+..+
T Consensus 50 ~~~~H~~~dE~~~Vl~G~g~v~~~~~-----~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p 111 (127)
T COG0662 50 SLHHHHHRDEHWYVLEGTGKVTIGGE-----EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSP 111 (127)
T ss_pred CcccccCcceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecC
Confidence 455554 6999999999999999988 899999999999999999999999888877766543
No 7
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.86 E-value=1.1e-08 Score=77.63 Aligned_cols=61 Identities=26% Similarity=0.431 Sum_probs=46.2
Q ss_pred CccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEE
Q 027870 114 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRL 179 (217)
Q Consensus 114 ~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRl 179 (217)
..+..|.|+.-|+.||++|+|.+.++++ .+.+++||+++||+|..|++...++..+...-+
T Consensus 14 ~~~~~h~h~~~~i~~v~~G~~~~~~~~~-----~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 14 FEFPPHWHDFYEIIYVLSGEGTLHIDGQ-----EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWI 74 (136)
T ss_dssp -SEEEETT-SEEEEEEEEE-EEEEETTE-----EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE
T ss_pred CccCCEECCCEEEEEEeCCEEEEEECCE-----EEEEECCEEEEecCCccEEEecCCCCCEEEEEE
Confidence 3468899999999999999999999988 899999999999999999999988655444433
No 8
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.83 E-value=4.1e-08 Score=84.07 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=67.4
Q ss_pred CeeeeeeeCccCccChHHHhcCccccccCC---CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeC
Q 027870 93 SYMDLLDLCPEKVTNYEEKLKNFYTEHIHA---DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD 169 (217)
Q Consensus 93 ~~~Dvi~i~p~~~p~y~~k~~~f~~eH~H~---~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~ 169 (217)
-..++.+|.|...+.--. .-..|.|. ..|++||++|+|.+.+.+.++....+.+++||+++||+|..|++.+.
T Consensus 68 L~~g~t~l~PG~~g~e~~----mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~ 143 (191)
T PRK04190 68 LNFGTTRLYPGKVGDEYF----MTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNT 143 (191)
T ss_pred eEEEEEEECCCcEecccc----cCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEEC
Confidence 467888889875431111 12246774 46999999999999999877777789999999999999999999998
Q ss_pred CCCcEEEEEEEcCC
Q 027870 170 TSNYVKLMRLFVGE 183 (217)
Q Consensus 170 ~~~~~~aiRlF~~~ 183 (217)
++..++.+-++...
T Consensus 144 G~epl~fl~v~p~~ 157 (191)
T PRK04190 144 GDEPLVFLACYPAD 157 (191)
T ss_pred CCCCEEEEEEEcCC
Confidence 88888877665443
No 9
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=98.81 E-value=4.5e-08 Score=78.95 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=58.3
Q ss_pred ccccccCC-CceEEEEEeceEEEEEecCC-CcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCC
Q 027870 115 FYTEHIHA-DEEIRYCLEGSGYFDVRDES-DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGE 183 (217)
Q Consensus 115 f~~eH~H~-~dEiryileG~g~f~v~~~~-d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~ 183 (217)
....|.|. .+|++||++|++.+.+.+.+ ++...+.+++||++.||+|+.|++.+.++..+..+-+....
T Consensus 42 ~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~~~ 112 (146)
T smart00835 42 MLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTND 112 (146)
T ss_pred CcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEecCC
Confidence 46799996 78999999999999998753 46778999999999999999999998877788877554444
No 10
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.75 E-value=6.7e-08 Score=77.79 Aligned_cols=70 Identities=29% Similarity=0.429 Sum_probs=53.0
Q ss_pred ccccccCCCceEEEEEeceEEEEEecCCC-----cEEEEE--EeCCCEEEeCCCCeeeeeeCCCCcEEEEEE-EcCCC
Q 027870 115 FYTEHIHADEEIRYCLEGSGYFDVRDESD-----QWIRIW--IKAGDLIVLPAGIYHRFTLDTSNYVKLMRL-FVGEP 184 (217)
Q Consensus 115 f~~eH~H~~dEiryileG~g~f~v~~~~d-----~wi~i~--v~~GDlIiIPaG~~H~F~~~~~~~~~aiRl-F~~~~ 184 (217)
....|+|...|+.||++|+|.+.+-+.++ +...-. +++||+++||+|..||..+++++....+.+ +...+
T Consensus 46 ~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~ 123 (144)
T PF00190_consen 46 LRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNP 123 (144)
T ss_dssp EEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESST
T ss_pred ccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCC
Confidence 68899998899999999999998887654 344554 999999999999999999987444444444 44433
No 11
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.70 E-value=1e-07 Score=88.68 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=61.6
Q ss_pred CccccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCC
Q 027870 114 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGE 183 (217)
Q Consensus 114 ~f~~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~ 183 (217)
.....|+|. .+|+.||++|++.+.+.+.+++-....+++||+++||+|..|++.+.++..+..+-+|..+
T Consensus 256 ~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~ 326 (367)
T TIGR03404 256 AMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKAD 326 (367)
T ss_pred CccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCC
Confidence 447899998 6899999999999999765555557889999999999999999999888889999998884
No 12
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.70 E-value=8e-08 Score=85.32 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=50.0
Q ss_pred cccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEE
Q 027870 118 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLM 177 (217)
Q Consensus 118 eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~ai 177 (217)
.|+|..+|..|||+|+|.+.++++ .+.|++||+|.||||++|++.+.++..++.|
T Consensus 195 ~~~H~~eh~~yiL~G~G~~~~~g~-----~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 195 IETHVMEHGLYVLEGKGVYNLDNN-----WVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred cccccceeEEEEEeceEEEEECCE-----EEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 578889999999999999999887 7899999999999999999999888777754
No 13
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.61 E-value=1.8e-07 Score=78.28 Aligned_cols=60 Identities=22% Similarity=0.350 Sum_probs=54.1
Q ss_pred ccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEc
Q 027870 117 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFV 181 (217)
Q Consensus 117 ~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~ 181 (217)
..|.|..+|+.||++|++.+.++++ .+.+++||.+.+|++++|++.+.++...+++-++.
T Consensus 122 ~~~~h~~~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 122 ERIKHQGEEIGTVLEGEIVLTINGQ-----DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred cccccCCcEEEEEEEeEEEEEECCE-----EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence 4677889999999999999999988 89999999999999999999998777788877765
No 14
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.60 E-value=2.3e-07 Score=74.33 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=50.8
Q ss_pred cccccCCCceEEEEEeceEEEE-Ee-cCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcC
Q 027870 116 YTEHIHADEEIRYCLEGSGYFD-VR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVG 182 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f~-v~-~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~ 182 (217)
...|.|...|+.||++|++.+. +. ++ .+.+++||.+.+|+|..|++.+. ..+..|-++..
T Consensus 48 ~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~tP 109 (125)
T PRK13290 48 THLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFNP 109 (125)
T ss_pred ccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEECC
Confidence 4568876679999999999999 74 77 89999999999999999999997 45666666663
No 15
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.57 E-value=2.3e-07 Score=77.53 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=49.4
Q ss_pred cccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEE
Q 027870 116 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK 175 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~ 175 (217)
+.+|.|+.+|++|+++|+..+.+.+. ++.-.+.+++||+++||+|++|++...++..+.
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~L 99 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAGSIGL 99 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCCcEEE
Confidence 56899999999999999999999864 343469999999999999999999886654433
No 16
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.52 E-value=3.2e-07 Score=77.87 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=48.1
Q ss_pred ccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCC
Q 027870 115 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 115 f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~ 172 (217)
-...|.|+.+|.+|+++|+....+.+ +++.-.+.+++||+++||+|++|+....++.
T Consensus 46 r~d~H~~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~~~t 102 (177)
T PRK13264 46 RTDFHYDPGEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQREAGS 102 (177)
T ss_pred ccccccCCCceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccCCCe
Confidence 46789999999999999999999975 3333479999999999999999999775443
No 17
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.46 E-value=1.1e-06 Score=81.86 Aligned_cols=67 Identities=27% Similarity=0.290 Sum_probs=55.9
Q ss_pred ccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcC
Q 027870 115 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVG 182 (217)
Q Consensus 115 f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~ 182 (217)
....|+|...|+.||++|++.+.+.+.+++.+...+++||++++|+|..|++.+.++ ....+-+|..
T Consensus 79 ~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~-~~~~l~vf~~ 145 (367)
T TIGR03404 79 IRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDE-GCEFLLVFDD 145 (367)
T ss_pred CCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCC-CeEEEEEeCC
Confidence 357999998999999999999999877777776689999999999999999998754 3455555554
No 18
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.45 E-value=1.3e-06 Score=75.93 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=62.1
Q ss_pred cccccCC-Cc--eEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCC
Q 027870 116 YTEHIHA-DE--EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEP 184 (217)
Q Consensus 116 ~~eH~H~-~d--EiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~ 184 (217)
...|+|+ -+ |++|+++|+|.+.+...+++.+.+.+++||.|+||+|--|+-.++++.++..+-+|....
T Consensus 93 ~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~ 164 (209)
T COG2140 93 RELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADA 164 (209)
T ss_pred cccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCC
Confidence 4569996 34 599999999999999988999999999999999999999999999999999998887764
No 19
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.41 E-value=5.8e-07 Score=80.67 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=50.7
Q ss_pred ccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEE
Q 027870 115 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKL 176 (217)
Q Consensus 115 f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~a 176 (217)
.+.+|+|+..|+.||++|+|.+.+++. .+.+++||+++||+|..|.+...++..+..
T Consensus 60 ~~~~H~H~~~el~~v~~G~g~~~v~~~-----~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~~ 116 (312)
T PRK13500 60 VFAEHTHDFCELVIVWRGNGLHVLNDR-----PYRITRGDLFYIHADDKHSYASVNDLVLQN 116 (312)
T ss_pred CCCccccceEEEEEEEcCeEEEEECCE-----EEeecCCeEEEECCCCeecccccCCceEEE
Confidence 468999999999999999999999998 899999999999999999998766544433
No 20
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.38 E-value=2.4e-06 Score=72.84 Aligned_cols=90 Identities=22% Similarity=0.306 Sum_probs=57.4
Q ss_pred HHcCCCeeeeeeeCccCccC-hHHHhcCccccccCC-------CceEEEEEeceEEEEEecCCC----cEEEEEEeCCCE
Q 027870 88 EARGYSYMDLLDLCPEKVTN-YEEKLKNFYTEHIHA-------DEEIRYCLEGSGYFDVRDESD----QWIRIWIKAGDL 155 (217)
Q Consensus 88 ~e~Gy~~~Dvi~i~p~~~p~-y~~k~~~f~~eH~H~-------~dEiryileG~g~f~v~~~~d----~wi~i~v~~GDl 155 (217)
++++. ..|+..|.|..+++ |-.-. -|.|. ..|+++|++|+|.|-+.+.++ +++.+.+++||+
T Consensus 46 ~~~~L-~ygiTvi~Pg~vG~E~~~T~-----GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~ 119 (182)
T PF06560_consen 46 QKRNL-RYGITVIPPGKVGGEYFMTK-----GHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDV 119 (182)
T ss_dssp ----E-EEEEEEE---EETTEE-B--------BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEE
T ss_pred eeeeE-EeeeEEEcCcccCCccccCC-----CccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCE
Confidence 44454 46888999988765 32222 45664 489999999999999998877 899999999999
Q ss_pred EEeCCCCeeeeeeCCCCcEEEEEEEcCC
Q 027870 156 IVLPAGIYHRFTLDTSNYVKLMRLFVGE 183 (217)
Q Consensus 156 IiIPaG~~H~F~~~~~~~~~aiRlF~~~ 183 (217)
++||+|..|+-.+.++..+++.-++...
T Consensus 120 v~IPp~yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 120 VYIPPGYAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp EEE-TT-EEEEEE-SSS-EEEEEEEETT
T ss_pred EEECCCceEEEEECCCCcEEEEEEEecC
Confidence 9999999999998888888877665543
No 21
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.36 E-value=8e-07 Score=78.30 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=47.3
Q ss_pred cccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 116 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
..+|+|+.-|+.||++|+|.+.|++. .+.+++||+++||+|..|.+...++
T Consensus 31 ~~~H~H~~~ei~~i~~G~~~~~i~~~-----~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 31 FVEHTHQFCEIVIVWRGNGLHVLNDH-----PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CccccccceeEEEEecCceEEEECCe-----eeeecCCeEEEEcCCCcccccccCC
Confidence 56899999999999999999999988 8999999999999999999887544
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.33 E-value=2.4e-06 Score=76.05 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=48.3
Q ss_pred ccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEE
Q 027870 119 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLM 177 (217)
Q Consensus 119 H~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~ai 177 (217)
|.|..+|.+||++|+|.+.++++ ...+++||.|.+|++.+|+|.+..+..++.+
T Consensus 201 ~~~~~ee~i~Vl~G~~~~~~~~~-----~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl 254 (266)
T PRK11171 201 ETHVMEHGLYVLEGKGVYRLNND-----WVEVEAGDFIWMRAYCPQACYAGGPGPFRYL 254 (266)
T ss_pred cCCCceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEECCCCCcEEEE
Confidence 56889999999999999999988 8999999999999999999998777665544
No 23
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.33 E-value=1.1e-06 Score=78.80 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=48.7
Q ss_pred ccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCc
Q 027870 115 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY 173 (217)
Q Consensus 115 f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~ 173 (217)
...+|+|++-|+.|+++|++.|.++++ .+.+.+||+++||+|+.|.+...++..
T Consensus 38 m~~~HwH~e~Ei~yv~~G~~~~~i~g~-----~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 38 MPTSHWHGQVEVNVPFDGDVEYLINNE-----KVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred CCCCCccccEEEEEecCCcEEEEECCE-----EEEEcCCcEEEEecCCcccccccCCCc
Confidence 367899999999999999999999998 899999999999999999987655443
No 24
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.32 E-value=1.9e-06 Score=75.20 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=45.8
Q ss_pred CccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeee
Q 027870 114 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL 168 (217)
Q Consensus 114 ~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~ 168 (217)
.....|+|+..|+.||++|++.+.+++. .+.+.+||+++||+|..|.+..
T Consensus 34 ~~~~~H~H~~~ei~~v~~G~~~~~i~~~-----~~~l~~g~l~~i~p~~~H~~~~ 83 (278)
T PRK10296 34 SVSGLHQHDYYEFTLVLTGRYYQEINGK-----RVLLERGDFVFIPLGSHHQSFY 83 (278)
T ss_pred cCCCCcccccEEEEEEEeceEEEEECCE-----EEEECCCcEEEeCCCCccceee
Confidence 3457999999999999999999999988 8999999999999999997644
No 25
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.30 E-value=2.4e-06 Score=71.32 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=57.5
Q ss_pred cccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCC--CeeeeeeCCCCcEEEEEEEcCCCc
Q 027870 116 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTLDTSNYVKLMRLFVGEPV 185 (217)
Q Consensus 116 ~~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG--~~H~F~~~~~~~~~aiRlF~~~~g 185 (217)
-..|+|. +||.+|||+|++.+.+++. +..|++||.+-.||| +.|-|.+.....++.+-+-..++-
T Consensus 56 s~~H~Hs~edEfv~ILeGE~~l~~d~~-----e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r~~~ 123 (161)
T COG3837 56 SLRHWHSAEDEFVYILEGEGTLREDGG-----ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGTREPD 123 (161)
T ss_pred ccccccccCceEEEEEcCceEEEECCe-----eEEecCCceeeccCCCcceeEEeecCCceEEEEEecccccc
Confidence 3579996 8999999999999999988 899999999999999 999999999888888877666554
No 26
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.29 E-value=4e-06 Score=80.04 Aligned_cols=63 Identities=17% Similarity=0.345 Sum_probs=54.2
Q ss_pred cccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCC
Q 027870 116 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGE 183 (217)
Q Consensus 116 ~~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~ 183 (217)
...|.|. .+|+.||++|++.+.++++ .+.+++||.+.+|+|++|++.+.++..+..|-++.++
T Consensus 389 ~~~h~H~~~~E~~~Vl~G~~~v~~dg~-----~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 389 LSLQMHHHRAEHWIVVSGTARVTIGDE-----TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS 452 (468)
T ss_pred cCccccCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 3556554 4677899999999999988 8999999999999999999999888888888877643
No 27
>PRK13503 transcriptional activator RhaS; Provisional
Probab=98.28 E-value=1e-06 Score=76.43 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=48.4
Q ss_pred CccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 114 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 114 ~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
..+.+|+|+..|+.||++|+|.+.+++. .+.+++||+++||+|..|.+...++
T Consensus 26 ~~~~~H~H~~~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 26 AAFPEHHHDFHEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred ccccccccCceeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhccC
Confidence 3467899999999999999999999988 8999999999999999999877654
No 28
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.25 E-value=2.3e-06 Score=74.72 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=47.8
Q ss_pred cccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCC
Q 027870 116 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~ 172 (217)
+..|+|+.-|+.||++|+|.+.+++. .+.+++||+++||+|..|.+...++.
T Consensus 31 ~~~H~h~~~~l~~v~~G~~~~~i~~~-----~~~l~~g~l~li~~~~~H~~~~~~~~ 82 (282)
T PRK13502 31 FAEHTHEFCELVMVWRGNGLHVLNER-----PYRITRGDLFYIRAEDKHSYTSVNDL 82 (282)
T ss_pred CCccccceEEEEEEecCcEEEEECCE-----EEeecCCcEEEECCCCcccccccCCc
Confidence 57899999999999999999999988 89999999999999999999875543
No 29
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.22 E-value=4.1e-06 Score=73.83 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=40.3
Q ss_pred ccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeee
Q 027870 119 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL 168 (217)
Q Consensus 119 H~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~ 168 (217)
++++++|+.||++|+..|.++++ .+.+++||+++||+|..|.|..
T Consensus 171 wtl~~dEi~YVLEGe~~l~IdG~-----t~~l~pGDvlfIPkGs~~hf~t 215 (233)
T PRK15457 171 WTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGT 215 (233)
T ss_pred eeccceEEEEEEEeEEEEEECCE-----EEEeCCCcEEEECCCCeEEecC
Confidence 44578999999999999999988 9999999999999999966644
No 30
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.21 E-value=3.1e-06 Score=73.82 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=51.2
Q ss_pred cccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEE
Q 027870 116 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRL 179 (217)
Q Consensus 116 ~~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRl 179 (217)
...|+|+ ..|+.||++|++.+.+++. .+.+++||+++||+|+.|.+...++....++.+
T Consensus 36 ~~~H~H~~~~~l~~~~~G~~~~~~~~~-----~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~i 95 (287)
T TIGR02297 36 MPVHFHDRYYQLHYLTEGSIALQLDEH-----EYSEYAPCFFLTPPSVPHGFVTDLDADGHVLTV 95 (287)
T ss_pred CCCcccccceeEEEEeeCceEEEECCE-----EEEecCCeEEEeCCCCccccccCCCcceEEEEe
Confidence 5789998 6999999999999999987 899999999999999999998766655555543
No 31
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.16 E-value=1.1e-05 Score=77.71 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=52.6
Q ss_pred ccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcC
Q 027870 117 TEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVG 182 (217)
Q Consensus 117 ~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~ 182 (217)
..|.|. .+|..||++|++.+.++++ .+.+++||.+.||+|++|++.+.++.++..|-+..+
T Consensus 399 ~~~~H~~~~E~~~VlsG~~~v~idg~-----~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g 460 (478)
T PRK15460 399 SVQMHHHRAEHWVVVAGTAKVTIDGD-----IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSG 460 (478)
T ss_pred CcCCCCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence 345553 4699999999999999998 899999999999999999999988888887777554
No 32
>PLN00212 glutelin; Provisional
Probab=98.13 E-value=1e-05 Score=78.13 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=56.9
Q ss_pred cCccccccCCCceEEEEEeceEEEEEecCC------------------------C-cEEEEEEeCCCEEEeCCCCeeeee
Q 027870 113 KNFYTEHIHADEEIRYCLEGSGYFDVRDES------------------------D-QWIRIWIKAGDLIVLPAGIYHRFT 167 (217)
Q Consensus 113 ~~f~~eH~H~~dEiryileG~g~f~v~~~~------------------------d-~wi~i~v~~GDlIiIPaG~~H~F~ 167 (217)
+.++..|.|...++.||+.|+|.+.+-..+ | ..-...+++||+|.||||+.||..
T Consensus 90 ~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~y 169 (493)
T PLN00212 90 QGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFY 169 (493)
T ss_pred CcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEEEE
Confidence 347889999999999999999999986311 0 001257899999999999999999
Q ss_pred eCCCCcEEEEEEEcC
Q 027870 168 LDTSNYVKLMRLFVG 182 (217)
Q Consensus 168 ~~~~~~~~aiRlF~~ 182 (217)
++++..+.++.++..
T Consensus 170 N~Gd~~~v~v~~~d~ 184 (493)
T PLN00212 170 NDGDAPVVALYVYDI 184 (493)
T ss_pred eCCCCcEEEEEEEec
Confidence 999998888877764
No 33
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=2.6e-05 Score=62.89 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=58.7
Q ss_pred eeeeeeeCccCccChHHHhcCccccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCC
Q 027870 94 YMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 94 ~~Dvi~i~p~~~p~y~~k~~~f~~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~ 172 (217)
++-+|+|+|.. + -.-|.|. .+-++|+|+|+.....++.-+ ..+.+.+||++.||+|++|--.+..+.
T Consensus 47 ~~~~vTi~pgA------k----akaH~H~~hEtaIYvlsG~ah~w~G~rLE--~ha~~~pGDf~YiPpgVPHqp~N~S~e 114 (142)
T COG4101 47 CMHLVTIPPGA------K----AKAHLHEEHETAIYVLSGEAHTWYGNRLE--EHAEVGPGDFFYIPPGVPHQPANLSTE 114 (142)
T ss_pred eEEEEeeCCCc------c----ccccccccccEEEEEEeceeeeeecccee--eeEEecCCCeEEcCCCCCCcccccCCC
Confidence 67889999874 1 2468997 577899999999988875422 378899999999999999998776666
Q ss_pred cEEEEEEEc
Q 027870 173 YVKLMRLFV 181 (217)
Q Consensus 173 ~~~aiRlF~ 181 (217)
...|+-.=+
T Consensus 115 p~s~vIaRs 123 (142)
T COG4101 115 PLSAVIARS 123 (142)
T ss_pred CeEEEEEcc
Confidence 666664433
No 34
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.02 E-value=3.8e-05 Score=68.29 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=50.3
Q ss_pred cccCCC-ceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEE---EEEcCCCc
Q 027870 118 EHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLM---RLFVGEPV 185 (217)
Q Consensus 118 eH~H~~-dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~ai---RlF~~~~g 185 (217)
.|.|.. +|+.||++|++.+.++++ ...+++||.+.+|+|..|+|.+..+...+.+ +-|..-+|
T Consensus 74 ~~~~~g~ee~iyVl~G~l~v~~~g~-----~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~y~~~~g 140 (260)
T TIGR03214 74 GFGGEGIETFLFVISGEVNVTAEGE-----THELREGGYAYLPPGSKWTLANAQAEDARFFLYKKRYQPVEG 140 (260)
T ss_pred CCCCCceEEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeeeEEcCC
Confidence 455665 899999999999999987 8899999999999999999988766555444 33444444
No 35
>PRK11171 hypothetical protein; Provisional
Probab=98.00 E-value=3e-05 Score=69.06 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=45.6
Q ss_pred CCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEE
Q 027870 122 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRL 179 (217)
Q Consensus 122 ~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRl 179 (217)
..+|+.||++|++.+.++++ .+.+++||.+.+|+|+.|+|.+..+...+.+-+
T Consensus 82 ~~eE~~~VlsG~l~v~~~g~-----~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 82 GAETFLFVVEGEITLTLEGK-----THALSEGGYAYLPPGSDWTLRNAGAEDARFHWI 134 (266)
T ss_pred CceEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 46899999999999999988 899999999999999999999866555554433
No 36
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.00 E-value=4.3e-05 Score=63.22 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=63.4
Q ss_pred HcCCCeeeeeeeCccCccChHHHhcCccccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeee
Q 027870 89 ARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 167 (217)
Q Consensus 89 e~Gy~~~Dvi~i~p~~~p~y~~k~~~f~~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~ 167 (217)
..+|+. ..|+|.|.. -+..|.|. -.|..+|++|+|.+.+++. ...+.+||.+.||+|..|+..
T Consensus 60 ~~~~~v-kri~V~pG~----------~lSlq~H~~R~E~W~Vv~G~a~v~~~~~-----~~~~~~g~sv~Ip~g~~H~i~ 123 (151)
T PF01050_consen 60 GEGYKV-KRITVNPGK----------RLSLQYHHHRSEHWTVVSGTAEVTLDDE-----EFTLKEGDSVYIPRGAKHRIE 123 (151)
T ss_pred cCCEEE-EEEEEcCCC----------ccceeeecccccEEEEEeCeEEEEECCE-----EEEEcCCCEEEECCCCEEEEE
Confidence 345653 566777653 46677776 5899999999999999988 899999999999999999999
Q ss_pred eCCCCcEEEEEEEcCC
Q 027870 168 LDTSNYVKLMRLFVGE 183 (217)
Q Consensus 168 ~~~~~~~~aiRlF~~~ 183 (217)
+.++.++..|-+-.++
T Consensus 124 n~g~~~L~~IEVq~G~ 139 (151)
T PF01050_consen 124 NPGKTPLEIIEVQTGE 139 (151)
T ss_pred CCCCcCcEEEEEecCC
Confidence 9877777777665543
No 37
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.97 E-value=4.3e-05 Score=63.67 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=50.6
Q ss_pred ccccccCCCceEEEEEeceEEEEEecC----CCcEEEEEEeCCCEEEeCCCCeeeeee-CCCCcEEEEEEEcCCCceEEe
Q 027870 115 FYTEHIHADEEIRYCLEGSGYFDVRDE----SDQWIRIWIKAGDLIVLPAGIYHRFTL-DTSNYVKLMRLFVGEPVWTAY 189 (217)
Q Consensus 115 f~~eH~H~~dEiryileG~g~f~v~~~----~d~wi~i~v~~GDlIiIPaG~~H~F~~-~~~~~~~aiRlF~~~~gW~~~ 189 (217)
--..|.|..|||+++++|+|+..+.+. +++--++.+.+|+.+.||.|..|..-+ ++...+.++.+.+.+|.=+-+
T Consensus 56 ~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSrpPvkvf~ 135 (167)
T PF02041_consen 56 ATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISRPPVKVFI 135 (167)
T ss_dssp B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEESSS--EEE
T ss_pred CCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEecCCCeEEEE
Confidence 357899999999999999999999865 366668999999999999999998554 557889999999999876665
Q ss_pred CC
Q 027870 190 NR 191 (217)
Q Consensus 190 ~r 191 (217)
+.
T Consensus 136 y~ 137 (167)
T PF02041_consen 136 YD 137 (167)
T ss_dssp ES
T ss_pred ec
Confidence 54
No 38
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.83 E-value=0.00015 Score=59.79 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCeeeeeeeCccCccChHHHhcCccccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeC
Q 027870 81 EELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLP 159 (217)
Q Consensus 81 ~~l~~l~~e~Gy~~~Dvi~i~p~~~p~y~~k~~~f~~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIP 159 (217)
..++++-+.+|+.+.- . + .-|--.|.|+ ..|+.-+++|++...+++.++. .+.+..||.|+||
T Consensus 35 ~~~e~~~~~~gW~gsW----~-g---------~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliP 98 (163)
T COG4297 35 AQVEDHFKANGWFGSW----R-G---------GVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIP 98 (163)
T ss_pred HHHHHHHhhcCCcccc----c-c---------cccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEe
Confidence 5688898999987532 1 1 1244468887 5899999999999999998887 7889999999999
Q ss_pred CCCeeeeeeCCCCcEEEEEEEcCCCceEEeCCCCCC-cHHHHHHHHhhcCC
Q 027870 160 AGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQED-HPARKEYIKGLTGQ 209 (217)
Q Consensus 160 aG~~H~F~~~~~~~~~aiRlF~~~~gW~~~~r~~d~-~~~R~~y~~~~~~~ 209 (217)
||+-|.-- ..+..|..+--|-...-|- +.++++. .+.-.+.++++...
T Consensus 99 AGvGH~rl-~sS~DF~VvGaYp~G~q~d-iqtg~~t~~aear~~I~~vplp 147 (163)
T COG4297 99 AGVGHCRL-HSSADFQVVGAYPPGQQAD-IQTGAPTDLAEARARIKSVPLP 147 (163)
T ss_pred cCcccccc-cCCCCeEEEcccCCccccc-ccCCCCccHHHHHHHHHcCCCc
Confidence 99999743 3334477666665554444 3566533 33333456665543
No 39
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.62 E-value=0.00011 Score=67.42 Aligned_cols=82 Identities=27% Similarity=0.432 Sum_probs=60.9
Q ss_pred CccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEE-------------EEE
Q 027870 114 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLM-------------RLF 180 (217)
Q Consensus 114 ~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~ai-------------RlF 180 (217)
..-..|.|+.--+|||++|.|-|.+-+.+ ++.+++||+|+.|+++.|-....+..++.=+ -||
T Consensus 103 EvApsHrHsqsAlRFvveG~Ga~T~VdGe----r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDiplv~~l~~gFf 178 (351)
T COG3435 103 EVAPSHRHNQSALRFVVEGKGAYTVVDGE----RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDIPLVNSLGAGFF 178 (351)
T ss_pred ccCCcccccccceEEEEeccceeEeecCc----eeeccCCCEEEccCceeccCCCCCCCceEEEcccchHHHHhhccccc
Confidence 44679999999999999999977766433 8999999999999999998877655554322 334
Q ss_pred cC-CCceEEeCCCCCCcHHH
Q 027870 181 VG-EPVWTAYNRPQEDHPAR 199 (217)
Q Consensus 181 ~~-~~gW~~~~r~~d~~~~R 199 (217)
.. .+.=+|..|+.++.-+|
T Consensus 179 e~~~e~~q~v~~~~~d~~ar 198 (351)
T COG3435 179 EEHPEEQQPVTRPEGDSLAR 198 (351)
T ss_pred ccCchhcCcccCCCCCchhh
Confidence 33 33346667777666666
No 40
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.59 E-value=0.00016 Score=66.98 Aligned_cols=56 Identities=27% Similarity=0.471 Sum_probs=48.1
Q ss_pred cccccCCCceEEEEEeceEEE-EEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEE
Q 027870 116 YTEHIHADEEIRYCLEGSGYF-DVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKL 176 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f-~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~a 176 (217)
-..|.|...-++||++|+|.| .|+++ ++.+++||++++|++..|...++++..+.-
T Consensus 94 ~~~HRht~sAl~~vveG~G~~t~V~g~-----~~~~~~gD~~~tP~w~wH~H~n~~d~~~~w 150 (335)
T TIGR02272 94 APSHRHTQSALRFIVEGKGAFTAVDGE-----RTTMHPGDFIITPSWTWHDHGNPGDEPMIW 150 (335)
T ss_pred CCccccccceEEEEEEcCceEEEECCE-----EEeeeCCCEEEeCCCeeEecccCCCCcEEE
Confidence 568999999999999999965 55777 999999999999999999998877665443
No 41
>PLN00212 glutelin; Provisional
Probab=97.57 E-value=0.00044 Score=67.06 Aligned_cols=71 Identities=8% Similarity=0.183 Sum_probs=59.8
Q ss_pred cCccccccCC-CceEEEEEeceEEEEEecCC-CcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCC
Q 027870 113 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDES-DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEP 184 (217)
Q Consensus 113 ~~f~~eH~H~-~dEiryileG~g~f~v~~~~-d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~ 184 (217)
+..+.+|+|. ..+|.||++|+|.+.+-+.+ .+++.=.|++||+++||+|-.|--.++.++ +..+-|.+...
T Consensus 358 gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~eg-fe~v~F~tna~ 430 (493)
T PLN00212 358 NALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREG-CQYIAFKTNAN 430 (493)
T ss_pred CcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCc-eEEEEeecCCC
Confidence 3558999997 68999999999999998765 568888999999999999999988887655 77777766653
No 42
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.52 E-value=0.00019 Score=62.28 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=56.3
Q ss_pred CeeeeeeeCccCccChHHHhcCccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCC
Q 027870 93 SYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 93 ~~~Dvi~i~p~~~p~y~~k~~~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~ 172 (217)
...-++.|.|+. -+..|+|...|+.+||+|+. .+. .-...+||+|.+|+|..|.+.++++.
T Consensus 127 ~~v~Ll~i~pG~----------~~p~H~H~G~E~tlVLeG~f----~de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~ 187 (215)
T TIGR02451 127 ARVRLLYIEAGQ----------SIPQHTHKGFELTLVLHGAF----SDE-----TGVYGVGDFEEADGSVQHQPRTVSGG 187 (215)
T ss_pred cEEEEEEECCCC----------ccCCCcCCCcEEEEEEEEEE----EcC-----CCccCCCeEEECCCCCCcCcccCCCC
Confidence 345666666653 47899999999999999993 244 34578999999999999999999877
Q ss_pred cEEEEEEEcCC
Q 027870 173 YVKLMRLFVGE 183 (217)
Q Consensus 173 ~~~aiRlF~~~ 183 (217)
.+.++-+..++
T Consensus 188 ~Cicl~v~dap 198 (215)
T TIGR02451 188 DCLCLAVLDAP 198 (215)
T ss_pred CeEEEEEecCC
Confidence 77777665554
No 43
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.45 E-value=0.00045 Score=51.56 Aligned_cols=59 Identities=31% Similarity=0.307 Sum_probs=42.5
Q ss_pred eeeeeeeCccCccChHHHhcCccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 94 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 94 ~~Dvi~i~p~~~p~y~~k~~~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
..-++.+.|. ..+..|.|...|-.|||+|+... + ++ ...+||++..|+|+.|.+.+.+.
T Consensus 25 ~~~L~r~~pG----------~~~p~H~H~g~ee~~VLeG~~~d--~--~~-----~~~~G~~~~~p~g~~h~~~s~~g 83 (91)
T PF12973_consen 25 RVSLLRLEPG----------ASLPRHRHPGGEEILVLEGELSD--G--DG-----RYGAGDWLRLPPGSSHTPRSDEG 83 (91)
T ss_dssp EEEEEEE-TT----------EEEEEEEESS-EEEEEEECEEEE--T--TC-----EEETTEEEEE-TTEEEEEEESSC
T ss_pred EEEEEEECCC----------CCcCccCCCCcEEEEEEEEEEEE--C--Cc-----cCCCCeEEEeCCCCccccCcCCC
Confidence 3455566654 35889999998888999999873 2 22 23899999999999999997543
No 44
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.41 E-value=0.00041 Score=50.47 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=35.4
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT 170 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~ 170 (217)
.+|..|||+|++.+...+. . ++.+++||++++|+|..-..+..+
T Consensus 25 ~~E~~~vleG~v~it~~~G--~--~~~~~aGD~~~~p~G~~~~w~v~~ 68 (74)
T PF05899_consen 25 EDEFFYVLEGEVTITDEDG--E--TVTFKAGDAFFLPKGWTGTWEVRE 68 (74)
T ss_dssp SEEEEEEEEEEEEEEETTT--E--EEEEETTEEEEE-TTEEEEEEEEE
T ss_pred CCEEEEEEEeEEEEEECCC--C--EEEEcCCcEEEECCCCEEEEEECe
Confidence 4999999999999998532 2 799999999999999877666543
No 45
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.41 E-value=0.00047 Score=57.43 Aligned_cols=57 Identities=28% Similarity=0.514 Sum_probs=41.4
Q ss_pred CCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCC-ceE
Q 027870 122 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEP-VWT 187 (217)
Q Consensus 122 ~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~-gW~ 187 (217)
+.||+-||++|+....++++ .+.+++||+|.||+|..=.|.... .|.-||..-| -|.
T Consensus 94 ~YDEi~~VlEG~L~i~~~G~-----~~~A~~GDvi~iPkGs~I~fst~~----~a~~~Yv~yPa~W~ 151 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEISIDGQ-----TVTAKPGDVIFIPKGSTITFSTPD----YARFFYVTYPANWQ 151 (152)
T ss_dssp SSEEEEEEEEEEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEEEE----EEEEEEEEESTT--
T ss_pred ecceEEEEEEeEEEEEECCE-----EEEEcCCcEEEECCCCEEEEecCC----CEEEEEEECCCccC
Confidence 57999999999998888877 899999999999999999997654 3344454444 363
No 46
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.33 E-value=0.00059 Score=63.24 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred hHHHHHHHH---HcCCCeeeeeeeCccCcc-------ChHHHhc--CccccccCCCceEEEEEeceEEEEEecCCCcEEE
Q 027870 80 DEELQKIRE---ARGYSYMDLLDLCPEKVT-------NYEEKLK--NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIR 147 (217)
Q Consensus 80 ~~~l~~l~~---e~Gy~~~Dvi~i~p~~~p-------~y~~k~~--~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~ 147 (217)
.+.|+++.+ ..+|.+.-+--++|.+-+ .+-.++. .--..|.|+...|++|++|+|+-.|+++ +
T Consensus 215 ~~aL~~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig~~-----~ 289 (335)
T TIGR02272 215 REALDDLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTATYRSTDATVFCVVEGRGQVRIGDA-----V 289 (335)
T ss_pred HHHHHHHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCCccccccEEEEEEeCeEEEEECCE-----E
Confidence 455666543 245555545556665422 2222222 2355788899999999999999999988 9
Q ss_pred EEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 148 IWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 148 i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
+..++||+++||+...|.+.++++
T Consensus 290 ~~W~~gD~f~vPsW~~~~h~a~~d 313 (335)
T TIGR02272 290 FRFSPKDVFVVPSWHPVRFEASDD 313 (335)
T ss_pred EEecCCCEEEECCCCcEecccCCC
Confidence 999999999999998888877653
No 47
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=97.19 E-value=0.0011 Score=58.21 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=43.8
Q ss_pred cccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 116 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
...+-...-++.++++|+|.+.+++. ++.+++||+|++|+|+.|.+...++
T Consensus 42 ~r~~~~~~~~i~~~~~G~~~~~~~~~-----~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 42 DRPLGMKGYILNLTIRGQGVIFNGGR-----AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ecCCCccceEEEEEEeccEEEecCCe-----eEecCCCCEEEECCCCceeeccCCC
Confidence 34555667789999999999999887 8999999999999999999876544
No 48
>PF12852 Cupin_6: Cupin
Probab=97.03 E-value=0.0014 Score=54.36 Aligned_cols=45 Identities=29% Similarity=0.556 Sum_probs=37.2
Q ss_pred ceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 124 EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 124 dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
--+.+|++|++++.+.+... .+.+++||++++|.|..|++..++.
T Consensus 36 ~~fh~V~~G~~~l~~~~~~~---~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGGE---PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEEEEECCeEEEEEcCCCC---eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 45678999999999986111 7999999999999999999966554
No 49
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0025 Score=53.50 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=54.2
Q ss_pred eeeeeeeCccC-cc-ChHHHhcCccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 94 YMDLLDLCPEK-VT-NYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 94 ~~Dvi~i~p~~-~p-~y~~k~~~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
..|+|+..... ++ .|-+....+|.|- -..||+-|||||+....+++. .+..+|||+|+||.|..-.|+..++
T Consensus 88 ~tdLvt~~~g~~l~aG~m~~~~~tf~wt-l~yDe~d~VlEGrL~V~~~g~-----tv~a~aGDvifiPKgssIefst~ge 161 (176)
T COG4766 88 TTDLVTEQEGSRLGAGLMEMKNTTFPWT-LNYDEIDYVLEGRLHVRIDGR-----TVIAGAGDVIFIPKGSSIEFSTTGE 161 (176)
T ss_pred eeceeecccCCccccceeeeccccCcce-ecccceeEEEeeeEEEEEcCC-----eEecCCCcEEEecCCCeEEEeccce
Confidence 34555554332 11 2444445666653 357899999999999999988 8999999999999999999998776
No 50
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.90 E-value=0.0046 Score=49.75 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=36.4
Q ss_pred cccccCC-CceEEEEEeceEEEEEecCCCcEEEEEEeCCC-EEEeCCCCeeeeeeCCCCc
Q 027870 116 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGD-LIVLPAGIYHRFTLDTSNY 173 (217)
Q Consensus 116 ~~eH~H~-~dEiryileG~g~f~v~~~~d~wi~i~v~~GD-lIiIPaG~~H~F~~~~~~~ 173 (217)
-.+|.|. ..|.++|+.|+..+.+.+.... -.+.+...+ .|.||+|+.|.+..-+++.
T Consensus 46 RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~~s 104 (131)
T PF05523_consen 46 RGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPPGVWHGIKNFSEDS 104 (131)
T ss_dssp EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-TT-EEEEE---TT-
T ss_pred ccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECCchhhHhhccCCCc
Confidence 5689996 7999999999999999865433 456666554 8999999999998777663
No 51
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.88 E-value=0.0052 Score=51.13 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=39.8
Q ss_pred cccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCC
Q 027870 116 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT 170 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~ 170 (217)
-..|.-+.+|.+|-++|.....|-+ +|+.-.|.++.||+..+|++++|+..-.+
T Consensus 46 ~DyHine~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~ 99 (151)
T PF06052_consen 46 TDYHINETEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA 99 (151)
T ss_dssp SSEEE-SS-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred CccccCCcceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence 3568889999999999999999986 46667899999999999999999876654
No 52
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.51 E-value=0.0054 Score=49.00 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=38.4
Q ss_pred cccC-CCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeC
Q 027870 118 EHIH-ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD 169 (217)
Q Consensus 118 eH~H-~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~ 169 (217)
+|.+ +.+|..+||+|.+.+.-++.. .+.+++||.+++|+|..=.-+..
T Consensus 57 ~r~~y~~~E~chil~G~v~~T~d~Ge----~v~~~aGD~~~~~~G~~g~W~V~ 105 (116)
T COG3450 57 FRVTYDEDEFCHILEGRVEVTPDGGE----PVEVRAGDSFVFPAGFKGTWEVL 105 (116)
T ss_pred ceEEcccceEEEEEeeEEEEECCCCe----EEEEcCCCEEEECCCCeEEEEEe
Confidence 4555 468999999999999887533 78999999999999987654443
No 53
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.43 E-value=0.0079 Score=57.47 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=42.1
Q ss_pred cCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEc
Q 027870 120 IHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFV 181 (217)
Q Consensus 120 ~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~ 181 (217)
-.+.||++++-+|++.+.-+=- .+.+++||+++||.||.++..+.+..+..++-.|.
T Consensus 143 NaDGD~Li~~q~G~l~l~Te~G-----~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~ 199 (424)
T PF04209_consen 143 NADGDELIFPQQGSLRLETEFG-----RLDVRPGDYVVIPRGTRFRVELPGPARGYIIENFG 199 (424)
T ss_dssp ESSEEEEEEEEES-EEEEETTE-----EEEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES
T ss_pred cCCCCEEEEEEECCEEEEecCe-----eEEEcCCeEEEECCeeEEEEEeCCCceEEEEEcCC
Confidence 4577999999999999988754 79999999999999999999999665555555554
No 54
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.06 E-value=0.024 Score=54.25 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=48.1
Q ss_pred cCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEc
Q 027870 120 IHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFV 181 (217)
Q Consensus 120 ~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~ 181 (217)
-.+.|+++++-+|++.+..+=- .+.+++||+++||.|+.++..+.+..+..++-.|.
T Consensus 145 NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 145 NADGDFLIVPQQGALLITTEFG-----RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred ccCCCEEEEEEeCcEEEEEecc-----ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 3567999999999999998854 79999999999999999999987655566665555
No 55
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=95.83 E-value=0.048 Score=41.17 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=48.5
Q ss_pred CCeeeeeeeCccCccChHHHhcCccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 92 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 92 y~~~Dvi~i~p~~~p~y~~k~~~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
+-..-.+.|+|.. .| -..++..+.-++|+++|.....+++. ...+.+||...||+|-.-.+.+..+
T Consensus 11 ~fa~G~l~Lpp~~-----~K----~~k~s~~~~~vF~V~~G~v~Vti~~~-----~f~v~~G~~F~VP~gN~Y~i~N~~~ 76 (85)
T PF11699_consen 11 FFASGMLELPPGG-----EK----PPKNSRDNTMVFYVIKGKVEVTIHET-----SFVVTKGGSFQVPRGNYYSIKNIGN 76 (85)
T ss_dssp S-EEEEEEE-TCC-----CE----EEEE--SEEEEEEEEESEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEE-SS
T ss_pred CceeEEEEeCCCC-----cc----CCcccCCcEEEEEEEeCEEEEEEcCc-----EEEEeCCCEEEECCCCEEEEEECCC
Confidence 4556677787763 11 13456678899999999999999988 8999999999999999999998776
Q ss_pred CcE
Q 027870 172 NYV 174 (217)
Q Consensus 172 ~~~ 174 (217)
...
T Consensus 77 ~~a 79 (85)
T PF11699_consen 77 EEA 79 (85)
T ss_dssp S-E
T ss_pred CcE
Confidence 543
No 56
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=95.82 E-value=0.031 Score=49.18 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=40.9
Q ss_pred ceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEE
Q 027870 124 EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMR 178 (217)
Q Consensus 124 dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiR 178 (217)
-.+.++++|++.+.+++. .+.+.+||++++|++.+|.+.........++.
T Consensus 72 ~~l~~~~~G~~~~~~~g~-----~~~l~~G~~~l~~~~~p~~~~~~~~~~~~~l~ 121 (302)
T PRK09685 72 FFTVFQLSGHAIIEQDDR-----QVQLAAGDITLIDASRPCSIYPQGLSEQISLL 121 (302)
T ss_pred EEEEEEecceEEEEECCe-----EEEEcCCCEEEEECCCCcEeecCCCceeEEEE
Confidence 457788999999999988 89999999999999999998776544433333
No 57
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.80 E-value=0.036 Score=53.18 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=46.4
Q ss_pred cCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCC-CCcEEEEEEEc
Q 027870 120 IHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNYVKLMRLFV 181 (217)
Q Consensus 120 ~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~-~~~~~aiRlF~ 181 (217)
-.+.|+++++-+|++.+..+=- .+.+++||+++||.|+.++..+.+ ..+..++-.|.
T Consensus 151 NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g 208 (438)
T PRK05341 151 NADGELLIVPQQGRLRLATELG-----VLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYG 208 (438)
T ss_pred cCCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecC
Confidence 3567999999999999998855 799999999999999999999743 44455555454
No 58
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.49 E-value=0.054 Score=51.96 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=46.9
Q ss_pred cCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeee-CCCCcEEEEEEEc
Q 027870 120 IHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL-DTSNYVKLMRLFV 181 (217)
Q Consensus 120 ~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~-~~~~~~~aiRlF~ 181 (217)
-.+.|+++++-+|++.+..+=- .+.+++||+++||.|+.++..+ ++..+..++-.|.
T Consensus 144 NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g 201 (435)
T PLN02658 144 NADGDFLIVPQQGRLWIKTELG-----KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFG 201 (435)
T ss_pred cCCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEecCccEEEEecCCCCeeEEEEeecC
Confidence 4567999999999999998854 7999999999999999999997 4455555555553
No 59
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=95.46 E-value=0.033 Score=41.88 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=21.1
Q ss_pred CCcEEEEEEeCCCEEEeCCCCeeeeeeCCCC
Q 027870 142 SDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 142 ~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~ 172 (217)
+-+.+++..++||+|+||||.+|+.-..+.+
T Consensus 77 gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 77 GIPVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp TS--EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred CcccccceECCCCEEEECCCceEEEEeCCce
Confidence 3456689999999999999999997666543
No 60
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=95.44 E-value=0.068 Score=42.21 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=45.4
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEE
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRL 179 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRl 179 (217)
.--+.+.++|++.+..++. .+.+.+||+++++++.++++...+......+++
T Consensus 55 ~~~l~~~~~G~~~~~~~g~-----~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~i 106 (172)
T PF14525_consen 55 HYLLVLPLSGSARIEQGGR-----EVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRI 106 (172)
T ss_pred EEEEEEEccCCEEEEECCE-----EEEEcCCeEEEEcCCCCEEEEECCCccEEEEEE
Confidence 4466788899999999988 899999999999999999999988777777766
No 61
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.20 E-value=0.038 Score=51.05 Aligned_cols=100 Identities=27% Similarity=0.426 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHc------CCCeeeeeeeCccC----ccC----hHHHhcCc-cccccCCCceEEEEEeceEEEEEecCCC
Q 027870 79 NDEELQKIREAR------GYSYMDLLDLCPEK----VTN----YEEKLKNF-YTEHIHADEEIRYCLEGSGYFDVRDESD 143 (217)
Q Consensus 79 ~~~~l~~l~~e~------Gy~~~Dvi~i~p~~----~p~----y~~k~~~f-~~eH~H~~dEiryileG~g~f~v~~~~d 143 (217)
+++.|++|.... ||+ +=-++|.+ ||- +.-+...| -..|.|.+.-|+-+++|+|+-.|+++
T Consensus 225 t~eAL~~la~~e~~dp~dG~~---~ryvNP~TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig~~-- 299 (351)
T COG3435 225 TREALERLARLEEPDPFDGYK---MRYVNPVTGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIGGE-- 299 (351)
T ss_pred HHHHHHHHHhccCCCCCCcce---EEEecCCCCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEECCE--
Confidence 357788887665 443 22344443 221 11122222 35788889999999999999999998
Q ss_pred cEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCCceEE
Q 027870 144 QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTA 188 (217)
Q Consensus 144 ~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~gW~~ 188 (217)
++.-.+||+++||.--.|++.++.++. ++--|++.|...+
T Consensus 300 ---rf~~~~~D~fvVPsW~~~~~~~gs~da--~LFsfsD~PV~ea 339 (351)
T COG3435 300 ---RFDWSAGDIFVVPSWAWHEHVNGSEDA--VLFSFSDRPVMEA 339 (351)
T ss_pred ---EeeccCCCEEEccCcceeecccCCcce--EEEecCCcHHHHH
Confidence 999999999999999999999975543 2333666665443
No 62
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=94.75 E-value=0.17 Score=41.04 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=48.4
Q ss_pred CCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCC
Q 027870 122 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGE 183 (217)
Q Consensus 122 ~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~ 183 (217)
..-|..||++|+|....-+ +++ ...++||.+-.+.+.-.|..++.+ .+.++..|..+
T Consensus 54 nHlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~vCVFnPp 110 (126)
T PF06339_consen 54 NHLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLVCVFNPP 110 (126)
T ss_pred CceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEEEEEcCCC
Confidence 4569999999999988762 344 577889999999999999999998 58888889875
No 63
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=94.28 E-value=0.14 Score=43.20 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=27.8
Q ss_pred cEEEEEEeCCCEEEeCCCCeeeeeeC-CCC-cEEEEEEEcCC
Q 027870 144 QWIRIWIKAGDLIVLPAGIYHRFTLD-TSN-YVKLMRLFVGE 183 (217)
Q Consensus 144 ~wi~i~v~~GDlIiIPaG~~H~F~~~-~~~-~~~aiRlF~~~ 183 (217)
..+.+.++|||+|.||+|-.|...+. +++ .+..=..|...
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 47899999999999999999999988 333 55554556543
No 64
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=94.19 E-value=0.17 Score=44.94 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=41.3
Q ss_pred ceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCC--CCcEEEE
Q 027870 124 EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT--SNYVKLM 177 (217)
Q Consensus 124 dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~--~~~~~ai 177 (217)
+-+.|+++|+....+.++ ...+.+|++..+|||.-|.+++.. +.+|.-+
T Consensus 84 e~~lfVv~Ge~tv~~~G~-----th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 84 ETFLFVVSGEITVKAEGK-----THALREGGYAYLPPGSGWTLRNAQKEDSRFHWI 134 (264)
T ss_pred eEEEEEEeeeEEEEEcCe-----EEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence 557999999999999999 899999999999999999999543 4444433
No 65
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=93.68 E-value=0.42 Score=40.47 Aligned_cols=60 Identities=18% Similarity=0.389 Sum_probs=44.2
Q ss_pred cCccccccCC----CceEEEEEeceEEEEEecC--C----CcEEEEEEeCCC--EEEeCCCCeeeeeeCCCC
Q 027870 113 KNFYTEHIHA----DEEIRYCLEGSGYFDVRDE--S----DQWIRIWIKAGD--LIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 113 ~~f~~eH~H~----~dEiryileG~g~f~v~~~--~----d~wi~i~v~~GD--lIiIPaG~~H~F~~~~~~ 172 (217)
+..-..|.|. +..+..|+.|+.+-.+-|. + ++|..+.+.+++ .|.||+|..|-|.+-+++
T Consensus 53 gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 53 GVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp TBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred cEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 3344556554 4689999999987665542 2 789999998887 699999999999987765
No 66
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=93.57 E-value=0.55 Score=39.85 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=47.2
Q ss_pred cCccccccC---CCceEEEEEeceEEEEEecC--C----CcEEEEEEeC--CCEEEeCCCCeeeeeeCCCC
Q 027870 113 KNFYTEHIH---ADEEIRYCLEGSGYFDVRDE--S----DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 113 ~~f~~eH~H---~~dEiryileG~g~f~v~~~--~----d~wi~i~v~~--GDlIiIPaG~~H~F~~~~~~ 172 (217)
+.....|.| ....+..|+.|+.+-.+-|. + ++|..+.+.+ +-.|.||+|..|-|.+-+++
T Consensus 54 gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~ 124 (176)
T TIGR01221 54 GVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE 124 (176)
T ss_pred CEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC
Confidence 445566765 47999999999988666543 1 6799999888 55999999999999986655
No 67
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=93.42 E-value=0.14 Score=45.42 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=43.0
Q ss_pred cCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEE
Q 027870 120 IHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLM 177 (217)
Q Consensus 120 ~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~ai 177 (217)
+|-.|-=.|||+|+|.|.++.. =+.|++||+|-+-|-.+-+..+++-+.|+-|
T Consensus 200 tHvmEHGlyvLeGk~vYrLn~d-----wv~V~aGD~mwm~A~cpQacyagG~g~frYL 252 (264)
T COG3257 200 THVMEHGLYVLEGKGVYRLNNN-----WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL 252 (264)
T ss_pred hhhhhcceEEEecceEEeecCc-----eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence 4555566999999999999844 5778999999999999998888776666644
No 68
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=93.24 E-value=0.14 Score=45.89 Aligned_cols=72 Identities=29% Similarity=0.570 Sum_probs=36.6
Q ss_pred cccccCCC---------ceEEEEE-e---ceEEEEEec---CCCcEEEEEEeCCCEEEeCCCCeeeeeeC--CCCc-EEE
Q 027870 116 YTEHIHAD---------EEIRYCL-E---GSGYFDVRD---ESDQWIRIWIKAGDLIVLPAGIYHRFTLD--TSNY-VKL 176 (217)
Q Consensus 116 ~~eH~H~~---------dEiryil-e---G~g~f~v~~---~~d~wi~i~v~~GDlIiIPaG~~H~F~~~--~~~~-~~a 176 (217)
|+.|.|+. +|++|.. . |-|.-.+-. ..|+ .+.|+-||.++||.| +|--.+. -..| +-+
T Consensus 166 yPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~--~~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~ 242 (261)
T PF04962_consen 166 YPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDE--HYVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWV 242 (261)
T ss_dssp -SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEE--EEEEETTEEEEESTT-B-SEEEEEESSEEEEEE
T ss_pred cCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcE--EEEEECCCEEEeCCC-CCCcCcCCCcCcEEEEE
Confidence 78999998 8999883 2 444422221 1122 678999999999999 6643332 2333 333
Q ss_pred EEEEcCCCceEEeCCC
Q 027870 177 MRLFVGEPVWTAYNRP 192 (217)
Q Consensus 177 iRlF~~~~gW~~~~r~ 192 (217)
|+=. .+.|..++.|
T Consensus 243 maG~--~r~~~~~~Dp 256 (261)
T PF04962_consen 243 MAGE--NRWWQFFDDP 256 (261)
T ss_dssp EESS--S-----CC-C
T ss_pred EEcC--CccccccCCc
Confidence 3322 2566665554
No 69
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=92.04 E-value=0.36 Score=45.69 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=46.5
Q ss_pred CCceEEEEEeceEEEEEe-cCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCC
Q 027870 122 ADEEIRYCLEGSGYFDVR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGE 183 (217)
Q Consensus 122 ~~dEiryileG~g~f~v~-~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~ 183 (217)
+.--|..+++|+|+...+ +. .+.+++||+++|||+..=.+...++. ++.-|-|...
T Consensus 352 ~~~SIllv~~G~g~l~~~t~~-----~~~v~rG~V~fI~a~~~i~~~~~sd~-~~~yrAf~~~ 408 (411)
T KOG2757|consen 352 DGPSILLVLKGSGILKTDTDS-----KILVNRGDVLFIPANHPIHLSSSSDP-FLGYRAFSNS 408 (411)
T ss_pred CCceEEEEEecceEEecCCCC-----ceeeccCcEEEEcCCCCceeeccCcc-eeeeeccccc
Confidence 356789999999999988 55 79999999999999999888887765 7777777653
No 70
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=91.86 E-value=0.23 Score=43.97 Aligned_cols=66 Identities=27% Similarity=0.503 Sum_probs=51.2
Q ss_pred ccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeee---eeeC---------CCCcEEEEEEEcCC
Q 027870 117 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR---FTLD---------TSNYVKLMRLFVGE 183 (217)
Q Consensus 117 ~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~---F~~~---------~~~~~~aiRlF~~~ 183 (217)
..|..+.+|++|-.+|.....|-++ ++.-.+.++.||+..+||+++|+ |..+ .+..+-++|++.+.
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRFantvGlVVEr~R~~tE~D~iR~yvg~ 124 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYYVGD 124 (279)
T ss_pred ccccCCcchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhhccceeEEEEeccCCCccceEEEEecc
Confidence 4688889999999999999999865 44448999999999999999995 4321 23335677887765
No 71
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=91.57 E-value=0.9 Score=35.56 Aligned_cols=63 Identities=25% Similarity=0.323 Sum_probs=44.5
Q ss_pred CccccccCCC-ceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCC--CCeeeeeeCCC-CcEEEEEEE
Q 027870 114 NFYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPA--GIYHRFTLDTS-NYVKLMRLF 180 (217)
Q Consensus 114 ~f~~eH~H~~-dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPa--G~~H~F~~~~~-~~~~aiRlF 180 (217)
.=|..|-|.. +.|-|+++|+.... ++. +. +-.+++||+-.+-| |+.|.=.+..+ ..+..++|+
T Consensus 40 ~gf~~HPH~g~eivTyv~~G~~~H~-Ds~-G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQlW 106 (107)
T PF02678_consen 40 AGFPMHPHRGFEIVTYVLEGELRHR-DSL-GN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQLW 106 (107)
T ss_dssp TEEEEEEECSEEEEEEEEESEEEEE-ETT-SE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEEE
T ss_pred CCCCCcCCCCceEEEEEecCEEEEE-CCC-CC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEEc
Confidence 3478999975 77799999988654 222 22 57799999977777 58898666655 778888775
No 72
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=90.98 E-value=1.2 Score=40.58 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=39.1
Q ss_pred cccccCCCceEEEEEeceEEEEEecCC------------------CcEEEEEEeCCCEEEeCCCCeeeeeeCC
Q 027870 116 YTEHIHADEEIRYCLEGSGYFDVRDES------------------DQWIRIWIKAGDLIVLPAGIYHRFTLDT 170 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f~v~~~~------------------d~wi~i~v~~GDlIiIPaG~~H~F~~~~ 170 (217)
+..|.=+.+-+..-++|+=...|.... .....+.++|||+|.||+|..|...+.+
T Consensus 128 ~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 128 FGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD 200 (319)
T ss_dssp SECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred ccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence 567777778888889999999988610 2356799999999999999999999888
No 73
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.69 E-value=1 Score=42.64 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=40.6
Q ss_pred CCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCC
Q 027870 122 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 122 ~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~ 172 (217)
+.|+++++-.|+..|..+-. .+.|++||+.+||.|+.-+...-++.
T Consensus 145 Dge~Livpq~G~l~l~te~G-----~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 145 DGELLIVPQQGELRLKTELG-----VLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCCEEEEeecceEEEEEeec-----eEEecCCcEEEeeCCceEEEEecCCc
Confidence 56899999999999988855 89999999999999999999885544
No 74
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=90.00 E-value=2.3 Score=36.22 Aligned_cols=61 Identities=15% Similarity=0.290 Sum_probs=48.2
Q ss_pred cCccccccCC--CceEEEEEeceEEEEEecC-C-----CcEEEEEEeCC--CEEEeCCCCeeeeeeCCCCc
Q 027870 113 KNFYTEHIHA--DEEIRYCLEGSGYFDVRDE-S-----DQWIRIWIKAG--DLIVLPAGIYHRFTLDTSNY 173 (217)
Q Consensus 113 ~~f~~eH~H~--~dEiryileG~g~f~v~~~-~-----d~wi~i~v~~G--DlIiIPaG~~H~F~~~~~~~ 173 (217)
+..-..|.|. ..+...|+.|+......|- . ++|..+.+.+. -.|.||+|..|-|.+-++..
T Consensus 55 GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 55 GVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred CeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence 4455678885 3899999999998776653 2 35999998876 78999999999999877665
No 75
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=89.68 E-value=0.34 Score=43.45 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=31.7
Q ss_pred cccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 116 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
-..|+|.-++-.||++|....+ +. +=-...+.+|.+..+|||..|.-.+.++
T Consensus 49 ~pph~H~~~~~~~Vi~G~~~~~--~~--~a~~~~l~~Gsy~~~PaG~~h~~~~~~~ 100 (251)
T PF14499_consen 49 SPPHIHNADYRGTVISGELHNG--DP--KAAAMWLPAGSYWFQPAGEPHITAAEGE 100 (251)
T ss_dssp E--BEESS-EEEEEEESEEEET--TE--E-----E-TTEEEEE-TT-EEEETTS-E
T ss_pred CCCcceeeeEEEEEEEeEEEcC--CC--cccceecCCCceEeccCCCceeeeccCc
Confidence 4689999999999999976553 22 1113568999999999998887665554
No 76
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=89.56 E-value=0.8 Score=40.55 Aligned_cols=26 Identities=35% Similarity=0.716 Sum_probs=19.7
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeCCCC
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~~~~ 172 (217)
.+.+.||.-|.||+|++|+|-+.+..
T Consensus 155 ~l~L~PGESiTL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 155 QLRLNPGESITLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred eEEeCCCCeEeeCCCCeeeEEecCCC
Confidence 68899999999999999999987655
No 77
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=87.48 E-value=1.6 Score=39.40 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeee
Q 027870 122 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR 165 (217)
Q Consensus 122 ~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~ 165 (217)
....|..|++|++.....+. .+.+++|+.++|||+....
T Consensus 252 ~~~~il~v~~G~~~i~~~~~-----~~~l~~G~~~~ipa~~~~~ 290 (302)
T TIGR00218 252 QSALILSVLEGSGRIKSGGK-----TLPLKKGESFFIPAHLGPF 290 (302)
T ss_pred CCcEEEEEEcceEEEEECCE-----EEEEecccEEEEccCCccE
Confidence 35678999999999876554 7889999999999998543
No 78
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=86.44 E-value=1.8 Score=40.96 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=32.9
Q ss_pred CCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeee
Q 027870 122 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 166 (217)
Q Consensus 122 ~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F 166 (217)
....|..|++|++.+..++. ++.+++|+.++|||+....-
T Consensus 338 ~~~~Illv~~G~~~i~~~~~-----~~~l~~G~~~fipa~~~~~~ 377 (389)
T PRK15131 338 QSAAILFCVEGEAVLWKGEQ-----QLTLKPGESAFIAANESPVT 377 (389)
T ss_pred CCcEEEEEEcceEEEEeCCe-----EEEECCCCEEEEeCCCccEE
Confidence 35689999999999876554 68899999999999876543
No 79
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=85.38 E-value=2.4 Score=31.84 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=19.0
Q ss_pred CcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 143 DQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 143 d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
..++.+..++||||+.|+-+.|.......
T Consensus 63 ~~~~~~~p~~G~lvlFPs~l~H~v~p~~~ 91 (101)
T PF13759_consen 63 SPYYIVEPEEGDLVLFPSWLWHGVPPNNS 91 (101)
T ss_dssp -SEEEE---TTEEEEEETTSEEEE----S
T ss_pred CceEEeCCCCCEEEEeCCCCEEeccCcCC
Confidence 34788999999999999999999876443
No 80
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=85.34 E-value=5.4 Score=35.46 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=53.3
Q ss_pred HHhcCccccccCC--CceEEEEEeceEEEEEecCCCcEE-EEEEeC-CCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCC
Q 027870 110 EKLKNFYTEHIHA--DEEIRYCLEGSGYFDVRDESDQWI-RIWIKA-GDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEP 184 (217)
Q Consensus 110 ~k~~~f~~eH~H~--~dEiryileG~g~f~v~~~~d~wi-~i~v~~-GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~ 184 (217)
...+.|.+.|.|. --|.+-|++|+..|.+-+.++..+ +..+.+ ++.-+||++..|+....+++--.-+.||..+.
T Consensus 18 ~~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy~~~~ 96 (287)
T PRK12335 18 TLPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFYCKPE 96 (287)
T ss_pred hchHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEEEcch
Confidence 4456788999995 479999999999998876555422 233444 45557999999999988666555566666543
No 81
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=85.14 E-value=1.6 Score=38.12 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=24.2
Q ss_pred EEEEEeCCCEEEeCCCCeeeeeeCCCC
Q 027870 146 IRIWIKAGDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 146 i~i~v~~GDlIiIPaG~~H~F~~~~~~ 172 (217)
-.+.++||.-|.||||++|+|-+.+..
T Consensus 153 ~~lkL~PGesitL~Pg~~HsFwae~g~ 179 (225)
T COG3822 153 SQLKLSPGESITLPPGLYHSFWAEEGG 179 (225)
T ss_pred eeEEECCCCcEecCCCceeeeeecCCc
Confidence 368899999999999999999988765
No 82
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=84.59 E-value=2.6 Score=39.05 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=53.1
Q ss_pred HHHHHHHcCCCeeeeeeeCccC----------ccChHHHhcCc-----cccccCCCceEEEEEeceEEEEEecCCCcEEE
Q 027870 83 LQKIREARGYSYMDLLDLCPEK----------VTNYEEKLKNF-----YTEHIHADEEIRYCLEGSGYFDVRDESDQWIR 147 (217)
Q Consensus 83 l~~l~~e~Gy~~~Dvi~i~p~~----------~p~y~~k~~~f-----~~eH~H~~dEiryileG~g~f~v~~~~d~wi~ 147 (217)
+..|++-.-|+..|+.++.... .|+-......+ ...-.+....|.+|++|+|....+++ .
T Consensus 205 ~~~lr~l~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~F~l~~~~i~~~~~~~~~~~~~il~v~eG~~~l~~~~~-----~ 279 (312)
T COG1482 205 IGELRELHLFKAKDVITLPTQPRKQGAELTYPVPNEDFALYKWDISGTAEFIKQESFSILLVLEGEGTLIGGGQ-----T 279 (312)
T ss_pred chhHHhhhhccccchhhcCCcccccCceEEEeccccceEEEEEeccChhhhccCCCcEEEEEEcCeEEEecCCE-----E
Confidence 4566677778888888885220 11111111100 00112346789999999999999877 8
Q ss_pred EEEeCCCEEEeCCCCeeeeeeC
Q 027870 148 IWIKAGDLIVLPAGIYHRFTLD 169 (217)
Q Consensus 148 i~v~~GDlIiIPaG~~H~F~~~ 169 (217)
+.+++|+-++|||...=+.-.+
T Consensus 280 ~~l~~G~s~~ipa~~~~~~i~g 301 (312)
T COG1482 280 LKLKKGESFFIPANDGPYTIEG 301 (312)
T ss_pred EEEcCCcEEEEEcCCCcEEEEe
Confidence 9999999999999965544333
No 83
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=84.27 E-value=0.8 Score=42.37 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.2
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeC
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLD 169 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~ 169 (217)
++.++|||.+.||||+.|.+..+
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~G 181 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLKG 181 (312)
T ss_pred EEecCCCCEEEecCCCceeeccc
Confidence 79999999999999999988665
No 84
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=84.22 E-value=0.53 Score=42.52 Aligned_cols=20 Identities=40% Similarity=0.810 Sum_probs=18.8
Q ss_pred EEEEeCCCEEEeCCCCeeee
Q 027870 147 RIWIKAGDLIVLPAGIYHRF 166 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F 166 (217)
.+.+++||.|.||||+.|.+
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 68999999999999999984
No 85
>COG1741 Pirin-related protein [General function prediction only]
Probab=80.84 E-value=6.3 Score=35.84 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=50.3
Q ss_pred cCccccccCCC-ceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCC--CCeeeeeeC--CCCcEEEEEEEcCCC
Q 027870 113 KNFYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPA--GIYHRFTLD--TSNYVKLMRLFVGEP 184 (217)
Q Consensus 113 ~~f~~eH~H~~-dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPa--G~~H~F~~~--~~~~~~aiRlF~~~~ 184 (217)
+..|..|.|.+ +-|-|+++|+....=..-+ .-.+.+||+-..-| |+.|.=.+. ....+..++++...|
T Consensus 54 G~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn----~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP 126 (276)
T COG1741 54 GRGFPPHPHRGLETVTYVLDGEIEHRDSLGN----KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLP 126 (276)
T ss_pred CCcCCCCCCCCcEEEEEEEccEEEEeecCCc----eeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCc
Confidence 34789999975 6778999999876544222 57788999988877 588875543 556788888877764
No 86
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=79.62 E-value=7.8 Score=29.00 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=39.8
Q ss_pred ccccccCCC--ceEEEEEeceEEEEEecCCCc--EEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 115 FYTEHIHAD--EEIRYCLEGSGYFDVRDESDQ--WIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 115 f~~eH~H~~--dEiryileG~g~f~v~~~~d~--wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
|...|.=.. =..+-|++|+..|..-+.++. --.+.+.+|+.-+|||...|+...-++
T Consensus 15 l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 15 LLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 444554332 356778999999999876432 236788999999999999999986554
No 87
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=77.86 E-value=2.6 Score=39.93 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.6
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeCC
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLDT 170 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~~ 170 (217)
.+.++|||.|.||||+.|.+-.+.
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~G~ 261 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQGV 261 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcCCe
Confidence 689999999999999999987654
No 88
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=74.48 E-value=8 Score=35.30 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=35.5
Q ss_pred cccccCC-CceEEE-EE--eceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCC
Q 027870 116 YTEHIHA-DEEIRY-CL--EGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT 170 (217)
Q Consensus 116 ~~eH~H~-~dEiry-il--eG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~ 170 (217)
|+.|+|+ ..|++| +- ++.-.|...+..|+-=.+.|+-||.+++|+-.-|.-..+.
T Consensus 191 yPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~gt~ 249 (276)
T PRK00924 191 MPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGVGTS 249 (276)
T ss_pred CCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCcCcc
Confidence 7899998 556544 22 2222233333334432488999999999999999755444
No 89
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=72.23 E-value=26 Score=28.45 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=46.7
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeee---eeCCCCcEEEEEEEcC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF---TLDTSNYVKLMRLFVG 182 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F---~~~~~~~~~aiRlF~~ 182 (217)
+-=+.+|+.|+=...++++ .+...+|++++.|.+++=.. .+.++.++.++++.-+
T Consensus 23 ~p~i~~vlQG~K~~~~g~~-----~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ld 80 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLGDQ-----VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLELD 80 (155)
T ss_pred CCeEEEEEeeeEEEEECCc-----eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEEcC
Confidence 4467899999999999987 89999999999999987654 5678889999988655
No 90
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=67.55 E-value=14 Score=33.45 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=35.0
Q ss_pred eEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCC
Q 027870 125 EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 172 (217)
Q Consensus 125 EiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~ 172 (217)
-++++..|.....-.+. . .+.+.+|.+|++|.+..|.+.+.+..
T Consensus 40 ~li~v~~G~~~i~~~~g--~--~l~i~~p~~~~~p~~~~~~~~~~~~~ 83 (291)
T PRK15186 40 VLIKLTTGKISITTSSG--E--YITASGPMLIFLAKDQTIHITMEETH 83 (291)
T ss_pred EEEEeccceEEEEeCCC--c--eEEeCCCeEEEEeCCcEEEEEecccC
Confidence 46888888887765433 2 58999999999999999999887643
No 91
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=66.55 E-value=3.2 Score=39.40 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=49.8
Q ss_pred hHHHHHHHHHcCCCe---eeeeeeCccCccChHHHhcCccccccCCCceEEEEEeceEEEEEecCC--------------
Q 027870 80 DEELQKIREARGYSY---MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDES-------------- 142 (217)
Q Consensus 80 ~~~l~~l~~e~Gy~~---~Dvi~i~p~~~p~y~~k~~~f~~eH~H~~dEiryileG~g~f~v~~~~-------------- 142 (217)
.+.+.+++..-+|-- .|-|.|+-. .. +.=+..|.-..+-...-.-|.=...|....
T Consensus 100 ~p~v~~l~~~FrflP~wr~ddiMIS~a------~~-GGgvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~ 172 (383)
T COG2850 100 HPEVAALMEPFRFLPDWRIDDIMISFA------AP-GGGVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLIL 172 (383)
T ss_pred CHHHHHHHHHhccCccccccceEEEEe------cC-CCccCccccchheeEEeecccceeecCCcccccCcCCCcchhhc
Confidence 456777777655321 233333422 11 223556666666555555555556555320
Q ss_pred ---CcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 143 ---DQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 143 ---d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
.--+...++|||++.||+|..|.-.+..+
T Consensus 173 ~~f~~~~d~vlepGDiLYiPp~~~H~gvae~d 204 (383)
T COG2850 173 APFEPDIDEVLEPGDILYIPPGFPHYGVAEDD 204 (383)
T ss_pred CCCCchhhhhcCCCceeecCCCCCcCCccccc
Confidence 11345678999999999999998776643
No 92
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=66.01 E-value=4 Score=36.67 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=34.4
Q ss_pred cccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEE
Q 027870 116 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRL 179 (217)
Q Consensus 116 ~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRl 179 (217)
-..|+|+..|=.||++|+..+...+..+ .-.+.+|.++..|+++.|....+++..+.-||-
T Consensus 184 g~i~~h~~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~~~e~~~vlyIRt 244 (251)
T PF14499_consen 184 GRIHTHASNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIFITEDECVLYIRT 244 (251)
T ss_dssp -SEEE--S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E------EESS-EEEEEEE
T ss_pred CceeccCCceEEEEEEeEEEEeecccCC---CccccCCcccccCCcccccccccCCCEEEEEEE
Confidence 3578999999999999999995542211 478889999999999999976666666666664
No 93
>PLN02288 mannose-6-phosphate isomerase
Probab=65.81 E-value=10 Score=36.18 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=30.6
Q ss_pred CCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCe
Q 027870 121 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIY 163 (217)
Q Consensus 121 H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~ 163 (217)
+..-.|..|++|++.....+. . ..+.+++|+.++|||+..
T Consensus 352 ~~gp~Illv~~G~~~i~~~~~--~-~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 352 VPGPSVFLVIEGEGVLSTGSS--E-DGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred CCCCEEEEEEcCEEEEecCCc--c-ceEEEeceeEEEEeCCCc
Confidence 345689999999999865533 1 136799999999999753
No 94
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=62.88 E-value=17 Score=25.63 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=32.6
Q ss_pred EEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeee
Q 027870 126 IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL 168 (217)
Q Consensus 126 iryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~ 168 (217)
..-|.+|..+.+..+..+ .+.+.+||-+.||+|..=+..+
T Consensus 19 ~l~v~~G~vWlT~~g~~~---D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 19 RLRVESGRVWLTREGDPD---DYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEEEccccEEEECCCCCC---CEEECCCCEEEeCCCCEEEEEe
Confidence 377899999999986533 4788899999999998766665
No 95
>PHA02890 hypothetical protein; Provisional
Probab=62.52 E-value=43 Score=30.56 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=44.7
Q ss_pred EEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCC
Q 027870 127 RYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEP 184 (217)
Q Consensus 127 ryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~ 184 (217)
..|++|++...+. .+|+-+...+.+||-+++--|+.|+-.. .+-.+..+++=.+.|
T Consensus 96 VlCL~Gs~~In~~-~~d~~iS~~I~kGeaF~mdv~t~H~i~T-Knl~L~Viky~vd~p 151 (278)
T PHA02890 96 VACIEGSCKINVN-IGDREISDHIHENQGFIMDVGLDHAIDS-DNVGLFITKFEVDAH 151 (278)
T ss_pred EEEeCCeEEEEEe-cCCceeeeeeecCceEEEEccceEEEEc-cceeEEEEEEEecce
Confidence 4578999999888 5688899999999999999999999887 555555555544444
No 96
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=62.10 E-value=28 Score=24.30 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=28.6
Q ss_pred CceEEEEEeceEEEEEecCCCc-EEEEEEeCCCEEEeC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLP 159 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~-wi~i~v~~GDlIiIP 159 (217)
.+.++++++|.......+.+++ .+...+.+|+++-.+
T Consensus 35 ~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 35 ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 4779999999999988876554 556678899987554
No 97
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=58.94 E-value=49 Score=25.58 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=33.5
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
..|+.=|++|+....+.+. +.|.. ..+|+-..||||..-.......
T Consensus 41 ~~E~M~vvsG~l~V~lpg~-~ew~~--~~aGesF~VpanssF~v~v~~~ 86 (94)
T PF06865_consen 41 APERMEVVSGELEVKLPGE-DEWQT--YSAGESFEVPANSSFDVKVKEP 86 (94)
T ss_dssp S-EEEEEEESEEEEEETT--SS-EE--EETT-EEEE-TTEEEEEEESS-
T ss_pred CCEEEEEEEeEEEEEcCCC-cccEE--eCCCCeEEECCCCeEEEEECcc
Confidence 5688999999999999864 56744 5699999999999888777653
No 98
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=58.85 E-value=61 Score=27.51 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=36.6
Q ss_pred CceEEEEEeceEEEEEecCCCc-EEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEE
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLM 177 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~-wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~ai 177 (217)
..-++++++|......-+.+|+ .+.-.+.+||++-...+..+.+++..-....++
T Consensus 56 ~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 56 ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 4678999999998877656555 455557899998776666555554333333333
No 99
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=58.70 E-value=67 Score=26.21 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=27.4
Q ss_pred CceEEEEEeceEEEEEecCCCc-EEEEEEeCCCEEEe
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVL 158 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~-wi~i~v~~GDlIiI 158 (217)
.+.+++|++|.......+.+|+ .+-..+.+||++-.
T Consensus 38 ~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 38 AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 5679999999998877665554 55567899999744
No 100
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=58.21 E-value=96 Score=25.27 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=40.6
Q ss_pred cCccccccCCCceEEEEEec-eEEEEEecCCCcEEEEEEeC----CC--EEEeCCCCeeeeeeCCC
Q 027870 113 KNFYTEHIHADEEIRYCLEG-SGYFDVRDESDQWIRIWIKA----GD--LIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 113 ~~f~~eH~H~~dEiryileG-~g~f~v~~~~d~wi~i~v~~----GD--lIiIPaG~~H~F~~~~~ 171 (217)
+.+-.+|.=..+|+.+...| ...+.+-+.++++.++.+.+ |. .++||+|+.....+.+.
T Consensus 51 ~~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~ 116 (139)
T PF06172_consen 51 GEFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPE 116 (139)
T ss_dssp TBEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECES
T ss_pred CCCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCC
Confidence 34455566578999999999 55666666788888877754 33 48999999887765443
No 101
>PHA02984 hypothetical protein; Provisional
Probab=56.71 E-value=62 Score=29.70 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=44.4
Q ss_pred EEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeC-CCCcEEEEEEEcCCC
Q 027870 126 IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD-TSNYVKLMRLFVGEP 184 (217)
Q Consensus 126 iryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~-~~~~~~aiRlF~~~~ 184 (217)
...|++|++...+. .+|+-+...+++|+-+++--++.|.-++. .+-.+..+++=.+.|
T Consensus 96 FvlCl~G~~~I~~~-~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y~v~~p 154 (286)
T PHA02984 96 FVLCLNGKTSIECF-NKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITYTSNCP 154 (286)
T ss_pred EEEEcCCeEEEEEe-cCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEEEecce
Confidence 35688999999888 46788999999999999999999998765 444455555444444
No 102
>PLN02288 mannose-6-phosphate isomerase
Probab=55.78 E-value=9.6 Score=36.29 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeCC
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLDT 170 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~~ 170 (217)
.+.++||+.|++|||+.|.+-.+.
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G~ 275 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSGE 275 (394)
T ss_pred eEecCCCCEEEecCCCCceecCCC
Confidence 789999999999999999875543
No 103
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.03 E-value=4.7 Score=39.80 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=33.6
Q ss_pred EEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEE
Q 027870 134 GYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLF 180 (217)
Q Consensus 134 g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF 180 (217)
+.|+-++.+.-++...++|||+|.+|.|..|-..+.+.-.-..+-+-
T Consensus 369 ~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~~~vHSlHvTlS 415 (629)
T KOG3706|consen 369 DNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTPALVHSLHVTLS 415 (629)
T ss_pred CCCChhHhCCchHHhhcCCCcEEEecCcceeeccccchhceeEEEee
Confidence 33444433445888899999999999999999988775544444443
No 104
>PRK10579 hypothetical protein; Provisional
Probab=53.90 E-value=75 Score=24.61 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=37.3
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
..|+.=|++|+....+.+. +.|. ...+|+-..||||..-.......
T Consensus 41 ~~E~MeivsG~l~V~Lpg~-~ew~--~~~aG~sF~VpanssF~l~v~~~ 86 (94)
T PRK10579 41 EPEEMTVISGALNVLLPGA-TDWQ--VYEAGEVFNVPGHSEFHLQVAEP 86 (94)
T ss_pred CcEEEEEEeeEEEEECCCC-cccE--EeCCCCEEEECCCCeEEEEECcc
Confidence 4688999999999999864 5564 46799999999999887776543
No 105
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=53.57 E-value=19 Score=30.44 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEE
Q 027870 122 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMR 178 (217)
Q Consensus 122 ~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiR 178 (217)
...-+.|+++|+......+. .+.+.+||.+++-. .+...+..+..+..++
T Consensus 134 ~~~~l~~~~~G~~~i~~~~~-----~~~L~~~d~l~~~~--~~~~~l~~~g~ll~v~ 183 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSITEGGN-----CISLSAGDLLLIDD--EEDLPLTGDGQLLWVS 183 (184)
T ss_dssp -SEEEEEESSS-EEECCCEE-----EEEE-TT-EEEEES--EECEEEEEECCEEEEE
T ss_pred CCEEEEEEeeCcEEEecCCC-----ceEcCCCCEEEEeC--CCceEecCCeeEEEEe
Confidence 35567899999766554544 79999999998866 4444555555555544
No 106
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=53.49 E-value=14 Score=29.42 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCEEEeCCCCeeeeeeCCC
Q 027870 143 DQWIRIWIKAGDLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 143 d~wi~i~v~~GDlIiIPaG~~H~F~~~~~ 171 (217)
..++.+.+++||+|+.-..+.|+-....+
T Consensus 177 ~~~~~~~~~~Gdvl~~~~~~~H~s~~N~s 205 (211)
T PF05721_consen 177 DEWVPVPMKAGDVLFFHSRLIHGSGPNTS 205 (211)
T ss_dssp SGCEEE-BSTTEEEEEETTSEEEEE-B-S
T ss_pred CceEEeecCCCeEEEEcCCccccCCCCCC
Confidence 56789999999999999999999876543
No 107
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=53.01 E-value=64 Score=26.22 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=27.8
Q ss_pred ceEEEEEeceEEEEEecCCCc-EEEEEEeCCCEEEeC
Q 027870 124 EEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLP 159 (217)
Q Consensus 124 dEiryileG~g~f~v~~~~d~-wi~i~v~~GDlIiIP 159 (217)
+.+++|++|.......+.+|+ .+--.+.+||++=.+
T Consensus 27 ~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 27 DMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred CeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 568999999999888777666 445556999997544
No 108
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=52.90 E-value=53 Score=22.36 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=30.2
Q ss_pred CceEEEEEeceEEEEEecCCCc-EEEEEEeCCCEEEeCC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLPA 160 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~-wi~i~v~~GDlIiIPa 160 (217)
.+.+++|++|.......+.+++ -+...+.+||++-..+
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~ 55 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIE 55 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHH
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeecccccee
Confidence 6889999999999999877665 4466788999875443
No 109
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=51.76 E-value=8.8 Score=30.61 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=23.7
Q ss_pred EEEEec---eEEEEEecCCCcEEEEEEeCCCEEEeCC
Q 027870 127 RYCLEG---SGYFDVRDESDQWIRIWIKAGDLIVLPA 160 (217)
Q Consensus 127 ryileG---~g~f~v~~~~d~wi~i~v~~GDlIiIPa 160 (217)
-|++.| ||.+.++|.. ...+++||.|+|-+
T Consensus 56 TYvI~g~~gSg~I~lNGAA----Ar~~~~GD~vII~s 88 (111)
T cd06919 56 TYVIPGERGSGVICLNGAA----ARLGQPGDRVIIMA 88 (111)
T ss_pred EEEEEcCCCCCEEEeCCHH----HhcCCCCCEEEEEE
Confidence 466655 5999999875 67899999999854
No 110
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=48.51 E-value=47 Score=25.11 Aligned_cols=53 Identities=34% Similarity=0.408 Sum_probs=35.9
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEP 184 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~ 184 (217)
.+=..|+++|++. +++. ...+.+|+++++..|..=.+++.+ .... +-|+.++|
T Consensus 20 ~~~~iyv~~G~~~--v~~~-----~~~~~~~~~~~l~~g~~i~~~a~~-~~a~-~lll~GeP 72 (104)
T PF05726_consen 20 HNAFIYVLEGSVE--VGGE-----EDPLEAGQLVVLEDGDEIELTAGE-EGAR-FLLLGGEP 72 (104)
T ss_dssp -EEEEEEEESEEE--ETTT-----TEEEETTEEEEE-SECEEEEEESS-SSEE-EEEEEE--
T ss_pred CEEEEEEEECcEE--ECCC-----cceECCCcEEEECCCceEEEEECC-CCcE-EEEEEccC
Confidence 4667999999975 5554 378999999999988888888885 2233 34555554
No 111
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=46.36 E-value=12 Score=30.53 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=23.7
Q ss_pred EEEEec---eEEEEEecCCCcEEEEEEeCCCEEEeCC
Q 027870 127 RYCLEG---SGYFDVRDESDQWIRIWIKAGDLIVLPA 160 (217)
Q Consensus 127 ryileG---~g~f~v~~~~d~wi~i~v~~GDlIiIPa 160 (217)
-|++.| ||.+.++|.. ...+++||.|||-+
T Consensus 57 TYvI~g~~GSg~I~lNGAA----Ar~~~~GD~vII~a 89 (126)
T PRK05449 57 TYVIAGERGSGVICLNGAA----ARLVQVGDLVIIAA 89 (126)
T ss_pred EEEEEcCCCCCEEEeCCHH----HhcCCCCCEEEEEE
Confidence 466655 5999999875 67899999999855
No 112
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=46.31 E-value=12 Score=30.56 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=23.7
Q ss_pred EEEEec---eEEEEEecCCCcEEEEEEeCCCEEEeCC
Q 027870 127 RYCLEG---SGYFDVRDESDQWIRIWIKAGDLIVLPA 160 (217)
Q Consensus 127 ryileG---~g~f~v~~~~d~wi~i~v~~GDlIiIPa 160 (217)
-|++.| ||.+.++|.. ...+++||.|+|-+
T Consensus 57 TYvI~G~~GSg~I~lNGAA----Arl~~~GD~VII~s 89 (126)
T TIGR00223 57 TYAIAGKRGSRIICVNGAA----ARCVSVGDIVIIAS 89 (126)
T ss_pred EEEEEcCCCCCEEEeCCHH----HhcCCCCCEEEEEE
Confidence 466655 5999999875 67899999999865
No 113
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=44.93 E-value=72 Score=22.15 Aligned_cols=37 Identities=16% Similarity=0.025 Sum_probs=27.7
Q ss_pred CceEEEEEeceEEEEEecCCC-cEEEEEEeCCCEEEeC
Q 027870 123 DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLP 159 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d-~wi~i~v~~GDlIiIP 159 (217)
.+.++++++|.......+.++ ..+.-.+.+||++-..
T Consensus 35 ~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 35 GDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred CCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 567899999999888775544 3555668899987554
No 114
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=42.93 E-value=79 Score=27.28 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCee-eeeeeCccCccChHHHhcCccccccCCCc---eEEEEE--eceEEEEEecC-------------
Q 027870 81 EELQKIREARGYSYM-DLLDLCPEKVTNYEEKLKNFYTEHIHADE---EIRYCL--EGSGYFDVRDE------------- 141 (217)
Q Consensus 81 ~~l~~l~~e~Gy~~~-Dvi~i~p~~~p~y~~k~~~f~~eH~H~~d---Eiryil--eG~g~f~v~~~------------- 141 (217)
+.+.+..++-|+... .-+.|. +...|.-. .+.+...|.|+.- =++|+- +|.|...+.+.
T Consensus 75 ~~v~~~~~~l~~d~~~~~l~i~-~~W~ni~~-~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~ 152 (201)
T TIGR02466 75 KHVAKFARDLEGDNDGLELRIQ-KAWVNILP-QGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIP 152 (201)
T ss_pred HHHHHHHHHcCCCccccceEEe-eEeEEEcC-CCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccC
Confidence 445566667776311 111121 11233332 3667889999864 346665 33333333321
Q ss_pred -----CCcEEEEEEeCCCEEEeCCCCeeeeeeC
Q 027870 142 -----SDQWIRIWIKAGDLIVLPAGIYHRFTLD 169 (217)
Q Consensus 142 -----~d~wi~i~v~~GDlIiIPaG~~H~F~~~ 169 (217)
...++.+.-++||+|+-|.-+.|.....
T Consensus 153 ~~~~~~~~~~~v~P~~G~lvlFPS~L~H~v~p~ 185 (201)
T TIGR02466 153 NAKRAVQRFVYVPPQEGRVLLFESWLRHEVPPN 185 (201)
T ss_pred ccccccCccEEECCCCCeEEEECCCCceecCCC
Confidence 1125567779999999999999997654
No 115
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=39.66 E-value=89 Score=24.24 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=29.2
Q ss_pred EEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCCceEEeCCC
Q 027870 135 YFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRP 192 (217)
Q Consensus 135 ~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~gW~~~~r~ 192 (217)
.+.++++ ...|++||.|.|+. + + ...++.-.+.-+-++.+ .+++-+.+|
T Consensus 4 Ii~~gGk-----QykV~~Gd~i~v~~-l-~-~~~G~~i~l~~VL~~~~-~~~~~iG~P 52 (103)
T PRK05573 4 IIKTGGK-----QYKVEEGDVIKVEK-L-D-AEVGDTVEFDEVLLVGG-GEEVKIGAP 52 (103)
T ss_pred EEEECCE-----EEEEeCCCEEEEcc-c-C-CCCCCEEEEeEEEEEeC-CCCEEECCe
Confidence 4566666 79999999999983 3 1 23333333333333333 666666666
No 116
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=38.00 E-value=87 Score=26.28 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=34.7
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeC---CCCeeeeeeCCCCcEEEEEE
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLP---AGIYHRFTLDTSNYVKLMRL 179 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIP---aG~~H~F~~~~~~~~~aiRl 179 (217)
.+.++++++|.........+++..-..+.+||++-.. .+.++.++...-....++++
T Consensus 48 ~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i 107 (236)
T PRK09392 48 ADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMI 107 (236)
T ss_pred cceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEE
Confidence 4688999999998876654455555678889986432 23444444333333444444
No 117
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=37.62 E-value=54 Score=29.99 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=32.9
Q ss_pred CCce-EEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCe-eeee
Q 027870 122 ADEE-IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIY-HRFT 167 (217)
Q Consensus 122 ~~dE-iryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~-H~F~ 167 (217)
...| ....|.|.|.+.++++ ...+.+.|.+.||.|.. =.|.
T Consensus 72 ~rrE~giV~lgG~~~V~vdG~-----~~~l~~~d~LYVp~G~~~v~~a 114 (276)
T PRK00924 72 ERRELGIINIGGAGTVTVDGE-----TYELGHRDALYVGKGAKEVVFA 114 (276)
T ss_pred CCcEEEEEEccceEEEEECCE-----EEecCCCcEEEECCCCcEEEEE
Confidence 3344 5777899999999877 67799999999999977 4554
No 118
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=37.59 E-value=1.2e+02 Score=28.51 Aligned_cols=35 Identities=14% Similarity=0.403 Sum_probs=29.0
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEc
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFV 181 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~ 181 (217)
+..|.++.+.+||.|++......+..+-..+.+|.
T Consensus 174 rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg 208 (446)
T KOG1417|consen 174 RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYG 208 (446)
T ss_pred ceeecccceEEeecccEEEEecCCCCcceEEEEec
Confidence 68899999999999999998887777666666654
No 119
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=36.00 E-value=1.2e+02 Score=27.91 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=41.1
Q ss_pred ccccCCCceEEEEE--eceEEEEEecCCCcEEEEEEeCCCEEEeCC------------CCeeeeeeCCCCcEEEEEEEcC
Q 027870 117 TEHIHADEEIRYCL--EGSGYFDVRDESDQWIRIWIKAGDLIVLPA------------GIYHRFTLDTSNYVKLMRLFVG 182 (217)
Q Consensus 117 ~eH~H~~dEiryil--eG~g~f~v~~~~d~wi~i~v~~GDlIiIPa------------G~~H~F~~~~~~~~~aiRlF~~ 182 (217)
.-..|+|-..+=+| ++.+=..|...+|+|+.+...+|-+|+-=. -+.||........-..|-+|..
T Consensus 198 g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~wTNg~~kSt~HRVv~~~~~~R~SiafF~~ 277 (335)
T PLN02156 198 GFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAG 277 (335)
T ss_pred CCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHHHhCCeeeccceeeecCCCCCEEEEEEeec
Confidence 34567765444333 455556776567899999888877664322 1789987654443455556655
Q ss_pred C
Q 027870 183 E 183 (217)
Q Consensus 183 ~ 183 (217)
+
T Consensus 278 P 278 (335)
T PLN02156 278 P 278 (335)
T ss_pred C
Confidence 3
No 120
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=35.63 E-value=1.6e+02 Score=20.86 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=35.0
Q ss_pred EeceEEEEEecCCCc-EEEEEEeCCCEEEeCCCCeeeeeeCCCCcE
Q 027870 130 LEGSGYFDVRDESDQ-WIRIWIKAGDLIVLPAGIYHRFTLDTSNYV 174 (217)
Q Consensus 130 leG~g~f~v~~~~d~-wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~ 174 (217)
..|..|+.|.+.+|+ .+.-.+++||-+.++.+-+-....+...-+
T Consensus 5 a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v 50 (77)
T PF13464_consen 5 ATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAV 50 (77)
T ss_pred EeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcE
Confidence 458899999977664 777788999999888888777777765533
No 121
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=35.22 E-value=1.7e+02 Score=24.55 Aligned_cols=37 Identities=11% Similarity=-0.028 Sum_probs=27.8
Q ss_pred CceEEEEEeceEEEEEecCCCc-EEEEEEeCCCEEEeC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLP 159 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~-wi~i~v~~GDlIiIP 159 (217)
.+.+++|++|.......+.+|+ .+--.+.+||++-..
T Consensus 49 ~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 49 PSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred CceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 4679999999998877666665 344458899987643
No 122
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=35.16 E-value=66 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=24.0
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEE
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLF 180 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF 180 (217)
.+.+.+|++++..|+-.|+.. +...++-+.+-
T Consensus 107 ~v~l~~G~F~iffP~daH~P~--~~~~ikK~VvK 138 (149)
T PRK10202 107 TVEVHEGQIVICDIHEAYRFI--CNNAVKKVVLK 138 (149)
T ss_pred EEEeCCCeEEEECCcccccCC--CCCcEEEEEEE
Confidence 688999999999999999987 33445544443
No 123
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=34.45 E-value=52 Score=21.78 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=19.2
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCCceEEe
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAY 189 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~gW~~~ 189 (217)
.+.+++||+|.|= -....++...+.. .+..||+|-
T Consensus 15 ~Ls~~~Gd~i~v~------~~~~~~~ww~~~~--~g~~G~~P~ 49 (55)
T PF07653_consen 15 ELSFKKGDVIEVL------GEKDDDGWWLGEN--NGRRGWFPS 49 (55)
T ss_dssp B-EB-TTEEEEEE------EEECSTSEEEEEE--TTEEEEEEG
T ss_pred ceEEecCCEEEEE------EeecCCCEEEEEE--CCcEEEEcH
Confidence 4888899988774 0112224444433 677789883
No 124
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=33.81 E-value=83 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.483 Sum_probs=24.1
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCC
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEP 184 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~ 184 (217)
++.+.+|.+++|| +.|..+.+..|. ||+|+..+
T Consensus 112 ~~~L~pG~YvIIP----sT~~p~~~g~F~-LrVfs~~~ 144 (150)
T cd00214 112 RFRLPPGEYVIVP----STFEPGEEGEFL-LRVFSEKS 144 (150)
T ss_pred EEEcCCCCEEEEe----eecCCCCcccEE-EEEEecCC
Confidence 6778899999987 456666665554 78888764
No 125
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=31.65 E-value=27 Score=32.76 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeCC
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLDT 170 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~~ 170 (217)
.+.++||+-|++|||+.|.+-.+.
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~G~ 274 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLSGD 274 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEEEE
T ss_pred EEEecCCceEEecCCCcccccccc
Confidence 689999999999999999986643
No 126
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=31.28 E-value=34 Score=26.13 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=29.6
Q ss_pred EEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEE-EEEcCCCceEEeCCCC
Q 027870 135 YFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLM-RLFVGEPVWTAYNRPQ 193 (217)
Q Consensus 135 ~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~ai-RlF~~~~gW~~~~r~~ 193 (217)
.+.++++ ...|++||+|.||. + .....+.+..= -|+.+..+++.+.+|-
T Consensus 4 Ii~~ggk-----QykV~~gd~i~v~~-l----~~~~G~~i~l~~VL~~~~~~~~~iG~P~ 53 (96)
T PF00829_consen 4 IIEIGGK-----QYKVEEGDVIDVER-L----DAEVGDKIELDKVLLIGSEDFTLIGRPY 53 (96)
T ss_dssp EEESSSE-----EEEESSSEEEEEES-T----SSSTTSEEEETTEEEEETSSSTCSSSSS
T ss_pred EEEECCE-----EEEEeCCCEEEECC-c----CcCCCCEEEEEEEEEEecCCCeEECCcc
Confidence 4556666 79999999999983 2 33333333321 2334445777777773
No 127
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=30.84 E-value=99 Score=24.52 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=30.2
Q ss_pred ceEEEEEeceEEEEEecCCCcEEEE-EEeCCCEEEeCCC
Q 027870 124 EEIRYCLEGSGYFDVRDESDQWIRI-WIKAGDLIVLPAG 161 (217)
Q Consensus 124 dEiryileG~g~f~v~~~~d~wi~i-~v~~GDlIiIPaG 161 (217)
+-++++++|.........+|+...+ .+.+||++-..+-
T Consensus 42 ~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l 80 (214)
T COG0664 42 DSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELAL 80 (214)
T ss_pred ceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHH
Confidence 4489999999999998877765555 4899999877753
No 128
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=29.43 E-value=1.7e+02 Score=26.62 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=39.7
Q ss_pred cccCCCceEEEEE--ec-eEEEEEecCCCcEEEEEEeCCCEEEeCCC-------------CeeeeeeCCCCcEEEEEEEc
Q 027870 118 EHIHADEEIRYCL--EG-SGYFDVRDESDQWIRIWIKAGDLIVLPAG-------------IYHRFTLDTSNYVKLMRLFV 181 (217)
Q Consensus 118 eH~H~~dEiryil--eG-~g~f~v~~~~d~wi~i~v~~GDlIiIPaG-------------~~H~F~~~~~~~~~aiRlF~ 181 (217)
-..|+|--.+=+| ++ .+=..|. .+++|+.+...+|+-|+|--| +.||.....+..-..|-+|.
T Consensus 172 ~~~HtD~g~lTlL~q~~~v~GLqV~-~~g~Wi~V~p~p~~~lvVNvGD~L~~~Tng~~~S~~HRVv~~~~~~R~Si~~F~ 250 (303)
T PLN02403 172 LREHTDAGGIILLLQDDQVPGLEFL-KDGKWVPIPPSKNNTIFVNTGDQLEVLSNGRYKSTLHRVMADKNGSRLSIATFY 250 (303)
T ss_pred ccCccCCCeEEEEEecCCCCceEec-cCCeEEECCCCCCCEEEEEehHHHHHHhCCeeecccceeecCCCCCEEEEEEEE
Confidence 3467765544333 32 3334554 578999998888877777766 78998765443334455555
Q ss_pred CC
Q 027870 182 GE 183 (217)
Q Consensus 182 ~~ 183 (217)
.+
T Consensus 251 ~p 252 (303)
T PLN02403 251 NP 252 (303)
T ss_pred cC
Confidence 54
No 129
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=29.34 E-value=2.1e+02 Score=26.26 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=32.0
Q ss_pred eEEEEEecCCCcEEEEEEeCCCEEEeCCC-------------CeeeeeeCCCCcEEEEEEEcCCC
Q 027870 133 SGYFDVRDESDQWIRIWIKAGDLIVLPAG-------------IYHRFTLDTSNYVKLMRLFVGEP 184 (217)
Q Consensus 133 ~g~f~v~~~~d~wi~i~v~~GDlIiIPaG-------------~~H~F~~~~~~~~~aiRlF~~~~ 184 (217)
.+=..|..++++||.+.--+|-+| |-.| +.||..++....=..+-+|..++
T Consensus 213 V~GLQv~~~dg~Wi~V~P~p~a~v-VNiGD~l~~lSNG~ykSv~HRV~~n~~~~R~Sia~F~~p~ 276 (322)
T KOG0143|consen 213 VGGLQVFTKDGKWIDVPPIPGAFV-VNIGDMLQILSNGRYKSVLHRVVVNGEKERISVAFFVFPP 276 (322)
T ss_pred cCceEEEecCCeEEECCCCCCCEE-EEcccHHhHhhCCcccceEEEEEeCCCCceEEEEEEecCC
Confidence 444444435789999888885554 3332 67999987766444555665543
No 130
>PTZ00273 oxidase reductase; Provisional
Probab=28.78 E-value=99 Score=27.96 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=40.7
Q ss_pred cccCCCceEEEEE--eceEEEEEecCCCcEEEEEEeCCCEEEeCCC-------------CeeeeeeCCCCcEEEEEEEcC
Q 027870 118 EHIHADEEIRYCL--EGSGYFDVRDESDQWIRIWIKAGDLIVLPAG-------------IYHRFTLDTSNYVKLMRLFVG 182 (217)
Q Consensus 118 eH~H~~dEiryil--eG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG-------------~~H~F~~~~~~~~~aiRlF~~ 182 (217)
-..|+|--.+=+| ++.+=..|...+|+|+.+...+|-+|+ --| +.||.......++.+.-|+..
T Consensus 197 ~~~HTD~g~lTlL~qd~~~GLqV~~~~g~Wi~V~p~pg~lvV-NvGD~l~~~TnG~~kSt~HRVv~~~~~R~Si~~F~~p 275 (320)
T PTZ00273 197 CGEHTDYGIITLLYQDSVGGLQVRNLSGEWMDVPPLEGSFVV-NIGDMMEMWSNGRYRSTPHRVVNTGVERYSMPFFCEP 275 (320)
T ss_pred cccccCCCeEEEEecCCCCceEEECCCCCEEeCCCCCCeEEE-EHHHHHHHHHCCeeeCCCccccCCCCCeEEEEEEEcC
Confidence 4467765444333 555446676667899999999887654 444 889987655555554444443
No 131
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=28.56 E-value=82 Score=22.77 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.6
Q ss_pred EeCCCEEEeCC-CCeeeeeeC
Q 027870 150 IKAGDLIVLPA-GIYHRFTLD 169 (217)
Q Consensus 150 v~~GDlIiIPa-G~~H~F~~~ 169 (217)
-++|++|+.|. .+.|+.+..
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v 86 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPV 86 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCccc
Confidence 89999999999 999998876
No 132
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=28.28 E-value=1.5e+02 Score=23.74 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=26.7
Q ss_pred CceEEEEEeceEEEEEecCCCc-EEEEEEeCCCEEE
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIV 157 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~-wi~i~v~~GDlIi 157 (217)
.+-+++|++|......-+.+|+ .+--.+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 3568999999999887766665 4455689999864
No 133
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=28.21 E-value=1.7e+02 Score=26.22 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=32.5
Q ss_pred cCCCceEEEEEeceEEEEEecCCCcEEEEEEeCC--------CEEEeCCCCeeeeeeCCC
Q 027870 120 IHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAG--------DLIVLPAGIYHRFTLDTS 171 (217)
Q Consensus 120 ~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~G--------DlIiIPaG~~H~F~~~~~ 171 (217)
+...|-...+|.|.+.+.+++. . ...+..- |.+.||.|+.=..++.++
T Consensus 44 ~~~~E~~vv~l~G~~~v~~~g~--~--~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 44 LERRELGVVNLGGKATVTVDGE--E--FYELGGRESVFDGPPDALYVPRGTKVVIFASTD 99 (261)
T ss_dssp CCSEEEEEEEESSSEEEEETTE--E--EEEE-TTSSGGGS--EEEEE-TT--EEEEESST
T ss_pred CCCcEEEEEEeCCEEEEEeCCc--e--EEEecccccccCCCCcEEEeCCCCeEEEEEcCC
Confidence 4445667888999999999762 1 4555555 999999999987777554
No 134
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=27.88 E-value=2.2e+02 Score=20.14 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=39.2
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVG 182 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~ 182 (217)
..-...+..|+.++.+....... +.++.+...+...|+.-+...+.+..-..+.++.+
T Consensus 38 ~~~~~~L~~G~~~~~~~~~~~~~--~~V~T~~~~i~v~GT~f~v~v~~~~~~~~v~v~~G 95 (98)
T PF04773_consen 38 EPTRLRLLSGEILFDVSPGKKRP--FEVRTPTATIGVRGTRFSVRVDAEDGSTRVAVLEG 95 (98)
T ss_pred CceEEEEcCCCEEEEEcccCCCC--EEEEeCCEEEEEecCEEEEEEECCCCcEEEEEEee
Confidence 44457788999999998654332 77777888888899877556544444444555443
No 135
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=27.76 E-value=54 Score=25.30 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeee
Q 027870 132 GSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 166 (217)
Q Consensus 132 G~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F 166 (217)
|.|.|.|++. ++ .|++++.|.++..|-
T Consensus 6 ~~g~~~i~g~-----~y---~~~viv~p~~~~~w~ 32 (109)
T cd00248 6 GPGGFRIAGQ-----VY---RGPLLVLPDGVVPWD 32 (109)
T ss_pred cCCEEEECCE-----EE---eeCEEEeCCceeecC
Confidence 5677888754 33 499999999998883
No 136
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=27.51 E-value=2.7e+02 Score=23.17 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=26.5
Q ss_pred CceEEEEEeceEEEEEecCCCc-EEEEEEeCCCEEEe
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVL 158 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~-wi~i~v~~GDlIiI 158 (217)
.+.++++++|.......+.+|+ .+--.+.+||++-.
T Consensus 55 ~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 55 LKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred cceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 3568999999998877766554 44445689999854
No 137
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=27.48 E-value=24 Score=28.68 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=21.1
Q ss_pred eceEEEEEecCCCcEEEEEEeCCCEEEeCC
Q 027870 131 EGSGYFDVRDESDQWIRIWIKAGDLIVLPA 160 (217)
Q Consensus 131 eG~g~f~v~~~~d~wi~i~v~~GDlIiIPa 160 (217)
.|||...++|.. ...+++||++||-+
T Consensus 63 rGSg~I~lNGAA----Arl~~~GD~VII~s 88 (126)
T COG0853 63 RGSGVICLNGAA----ARLVQVGDLVIIMS 88 (126)
T ss_pred CCCcEEEechHH----HhhCCCCCEEEEEE
Confidence 468899998864 67899999999854
No 138
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=26.47 E-value=16 Score=29.33 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEec---eEEEEEecCCCcEEEEEEeCCCEEEeCC
Q 027870 127 RYCLEG---SGYFDVRDESDQWIRIWIKAGDLIVLPA 160 (217)
Q Consensus 127 ryileG---~g~f~v~~~~d~wi~i~v~~GDlIiIPa 160 (217)
-|++.| +|...++|.. ...+++||.|+|-+
T Consensus 57 TYvI~g~~GSg~I~lNGaA----Arl~~~GD~vII~s 89 (116)
T PF02261_consen 57 TYVIPGERGSGVICLNGAA----ARLVQVGDRVIIMS 89 (116)
T ss_dssp EEEEEESTTTT-EEEEGGG----GGCS-TT-EEEEEE
T ss_pred EEEEEccCCCcEEEECCHH----HhccCCCCEEEEEE
Confidence 455554 6899999875 56789999999843
No 139
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=26.12 E-value=38 Score=30.92 Aligned_cols=16 Identities=44% Similarity=0.883 Sum_probs=14.6
Q ss_pred EEeCCCEEEeCCCCee
Q 027870 149 WIKAGDLIVLPAGIYH 164 (217)
Q Consensus 149 ~v~~GDlIiIPaG~~H 164 (217)
.+++||.|.||+|+++
T Consensus 7 ~A~~GDtI~l~~G~Y~ 22 (314)
T TIGR03805 7 AAQPGDTIVLPEGVFQ 22 (314)
T ss_pred hCCCCCEEEECCCEEE
Confidence 4679999999999998
No 140
>PLN02868 acyl-CoA thioesterase family protein
Probab=25.67 E-value=1.5e+02 Score=27.69 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=27.9
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEe
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVL 158 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiI 158 (217)
.+.+++|++|+......+.+++.+-..+++||++-.
T Consensus 49 ~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 49 GDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred CceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 457999999999887766666655566799998764
No 141
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.75 E-value=39 Score=35.45 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=17.8
Q ss_pred eEEEEEecCCCcEEEEEEeCCCEEEeC
Q 027870 133 SGYFDVRDESDQWIRIWIKAGDLIVLP 159 (217)
Q Consensus 133 ~g~f~v~~~~d~wi~i~v~~GDlIiIP 159 (217)
++.|-++..+-. .+..++||+|+|+
T Consensus 697 rAly~FeaRs~d--Eisf~pGDII~V~ 721 (1118)
T KOG1029|consen 697 RALYPFEARSHD--EISFEPGDIIIVF 721 (1118)
T ss_pred eeecccccCCcc--cccccCCCEEEEe
Confidence 566666543222 7899999999998
No 142
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=24.62 E-value=1.3e+02 Score=22.14 Aligned_cols=13 Identities=38% Similarity=1.227 Sum_probs=10.4
Q ss_pred EEEEeCCCEEEeC
Q 027870 147 RIWIKAGDLIVLP 159 (217)
Q Consensus 147 ~i~v~~GDlIiIP 159 (217)
++++.+||+++|-
T Consensus 36 ~iwI~~GD~V~Ve 48 (77)
T cd05793 36 RVWINEGDIVLVA 48 (77)
T ss_pred cEEEcCCCEEEEE
Confidence 5888899998873
No 143
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=23.82 E-value=1.1e+02 Score=25.08 Aligned_cols=56 Identities=32% Similarity=0.426 Sum_probs=37.0
Q ss_pred CCceEEEEEe----ceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCCceEE
Q 027870 122 ADEEIRYCLE----GSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTA 188 (217)
Q Consensus 122 ~~dEiryile----G~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~gW~~ 188 (217)
+..|++-++- |+..+.|=++. --.++|||+|-+-.|..--|.. +++||.+..||+.
T Consensus 34 dg~~v~~~kVaD~TgsI~isvW~e~----~~~~~PGDIirLt~Gy~Si~qg-------~LtL~~GK~Ge~~ 93 (134)
T KOG3416|consen 34 DGHEVRSCKVADETGSINISVWDEE----GCLIQPGDIIRLTGGYASIFQG-------CLTLYVGKGGEVQ 93 (134)
T ss_pred CCCEEEEEEEecccceEEEEEecCc----CcccCCccEEEecccchhhhcC-------ceEEEecCCceEe
Confidence 4568888874 55556555432 3567899999887776544432 4677777777764
No 144
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=23.71 E-value=1.4e+02 Score=24.12 Aligned_cols=58 Identities=28% Similarity=0.271 Sum_probs=31.6
Q ss_pred cccCC-CceEEEEEeceEEEEEe-cC------------CCc--------EEEEEEeCCCEEEeCCCCeeeee--eCCCCc
Q 027870 118 EHIHA-DEEIRYCLEGSGYFDVR-DE------------SDQ--------WIRIWIKAGDLIVLPAGIYHRFT--LDTSNY 173 (217)
Q Consensus 118 eH~H~-~dEiryileG~g~f~v~-~~------------~d~--------wi~i~v~~GDlIiIPaG~~H~F~--~~~~~~ 173 (217)
.-.|. .-.|-|+++|+=.+.+. .. .|- --.+.+++|+++++=|+-.|+.. .++...
T Consensus 63 ~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~~~~~~~~~ 142 (153)
T PF04074_consen 63 FESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPGCAVDEPEP 142 (153)
T ss_dssp EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEEE-BTT--B
T ss_pred eeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCccccccccCCCCce
Confidence 34453 56778888888777772 11 111 22678999999999999999966 444344
Q ss_pred EE
Q 027870 174 VK 175 (217)
Q Consensus 174 ~~ 175 (217)
++
T Consensus 143 v~ 144 (153)
T PF04074_consen 143 VR 144 (153)
T ss_dssp -E
T ss_pred EE
Confidence 44
No 145
>smart00720 calpain_III calpain_III.
Probab=23.44 E-value=1.4e+02 Score=23.38 Aligned_cols=33 Identities=21% Similarity=0.569 Sum_probs=22.9
Q ss_pred EEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEEEcCCC
Q 027870 147 RIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEP 184 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRlF~~~~ 184 (217)
+..+.+|.+++||. .|..+....|. ||+|...+
T Consensus 107 ~~~L~~G~Y~iVPs----T~~p~~~g~F~-LrV~s~~~ 139 (143)
T smart00720 107 RFRLPPGEYVIVPS----TFEPNQEGDFL-LRVFSEGP 139 (143)
T ss_pred EEEcCCCCEEEEEe----ecCCCCccCEE-EEEEecCc
Confidence 56788899988874 55556655554 78887754
No 146
>PLN02276 gibberellin 20-oxidase
Probab=23.27 E-value=2.5e+02 Score=26.03 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=41.2
Q ss_pred ccccCCCceEEEEE--eceEEEEEecCCCcEEEEEEeCCCEEEeC------------CCCeeeeeeCCCCcEEEEEEEcC
Q 027870 117 TEHIHADEEIRYCL--EGSGYFDVRDESDQWIRIWIKAGDLIVLP------------AGIYHRFTLDTSNYVKLMRLFVG 182 (217)
Q Consensus 117 ~eH~H~~dEiryil--eG~g~f~v~~~~d~wi~i~v~~GDlIiIP------------aG~~H~F~~~~~~~~~aiRlF~~ 182 (217)
.-..|+|--.+=+| ++.+=..|. .+|+|+.+...+|-+||-= .-+.||........-..|-+|..
T Consensus 224 g~~~HTD~g~lTlL~Qd~v~GLQV~-~~g~Wi~V~p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~ 302 (361)
T PLN02276 224 GTGPHCDPTSLTILHQDQVGGLQVF-VDNKWRSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAFFLC 302 (361)
T ss_pred CCccccCCceeEEEEecCCCceEEE-ECCEEEEcCCCCCeEEEEcHHHHHHHhCCccccccceeecCCCCCEEEEEEEec
Confidence 34567654433333 554445565 4789999998888766443 33889987654444455666666
Q ss_pred CCc
Q 027870 183 EPV 185 (217)
Q Consensus 183 ~~g 185 (217)
+..
T Consensus 303 P~~ 305 (361)
T PLN02276 303 PKE 305 (361)
T ss_pred CCC
Confidence 443
No 147
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.10 E-value=1.2e+02 Score=25.63 Aligned_cols=77 Identities=21% Similarity=0.391 Sum_probs=43.8
Q ss_pred cCCCeeeeeeeCccCccChHHHhcCccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeC
Q 027870 90 RGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD 169 (217)
Q Consensus 90 ~Gy~~~Dvi~i~p~~~p~y~~k~~~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~ 169 (217)
-|.....++++--. +|+-++.-..| ==++|++|+.=. -. --.++.||++++|-.+-=-.+++
T Consensus 82 ~G~~~~r~~~LVYn-L~~~~~iy~Rf------------~gv~GsAYlvgG-~G----~~~l~~~~ivl~PIR~GvG~RLG 143 (160)
T PF06577_consen 82 FGGNGSRVFMLVYN-LPDPDDIYQRF------------PGVEGSAYLVGG-VG----MTYLRNGDIVLAPIRTGVGARLG 143 (160)
T ss_pred ecCCceEEEEEEEc-CCCHHHHhhhC------------CCccceEEEEcc-ce----EEEEEeCCEEEEEeecCcceeee
Confidence 35555566665543 45444443332 236888877443 32 45578899999996554444444
Q ss_pred CC-CcEEEEEEEcCCCceEE
Q 027870 170 TS-NYVKLMRLFVGEPVWTA 188 (217)
Q Consensus 170 ~~-~~~~aiRlF~~~~gW~~ 188 (217)
-+ .+++ |+..+-|.|
T Consensus 144 ~nvGYl~----fT~~~twnP 159 (160)
T PF06577_consen 144 ANVGYLK----FTRKPTWNP 159 (160)
T ss_pred eeeeeEe----ecCCCCcCC
Confidence 33 2222 777788876
No 148
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=23.03 E-value=4.4e+02 Score=21.84 Aligned_cols=70 Identities=11% Similarity=-0.010 Sum_probs=42.9
Q ss_pred CccccccCCC-ceEEEEEeceEEEEEecC-CC--cEE-----EEEEeCCCEEEeCCCCeeeeeeC-CCCcEEEEEEEcCC
Q 027870 114 NFYTEHIHAD-EEIRYCLEGSGYFDVRDE-SD--QWI-----RIWIKAGDLIVLPAGIYHRFTLD-TSNYVKLMRLFVGE 183 (217)
Q Consensus 114 ~f~~eH~H~~-dEiryileG~g~f~v~~~-~d--~wi-----~i~v~~GDlIiIPaG~~H~F~~~-~~~~~~aiRlF~~~ 183 (217)
+.-.-|-|.. -=+..+++|+..-..-.. ++ ... ......|...+.+++-.|+..+. .+.....|.+|..+
T Consensus 86 q~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~~~avSLHvYspP 165 (175)
T PF05995_consen 86 QRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGDEPAVSLHVYSPP 165 (175)
T ss_dssp -B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SSS-EEEEEEEES-
T ss_pred CcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCCCCEEEEEEcCCC
Confidence 4567899975 457889999876443222 11 111 23456777778899999999654 47778888888764
No 149
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=22.91 E-value=1.4e+02 Score=22.27 Aligned_cols=12 Identities=33% Similarity=1.301 Sum_probs=9.8
Q ss_pred EEEEeCCCEEEe
Q 027870 147 RIWIKAGDLIVL 158 (217)
Q Consensus 147 ~i~v~~GDlIiI 158 (217)
++++.+||+++|
T Consensus 41 ~iwI~~GD~VlV 52 (83)
T smart00652 41 KVWIRRGDIVLV 52 (83)
T ss_pred cEEEcCCCEEEE
Confidence 577888888887
No 150
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=22.84 E-value=3e+02 Score=25.28 Aligned_cols=75 Identities=28% Similarity=0.388 Sum_probs=48.6
Q ss_pred EEEEEeceEEEEEecCCCc-EEEEEEe-CCCEEEeCCC--CeeeeeeCCCCcEEEEEEEcCCCceEEeCCCCCCcHHHHH
Q 027870 126 IRYCLEGSGYFDVRDESDQ-WIRIWIK-AGDLIVLPAG--IYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKE 201 (217)
Q Consensus 126 iryileG~g~f~v~~~~d~-wi~i~v~-~GDlIiIPaG--~~H~F~~~~~~~~~aiRlF~~~~gW~~~~r~~d~~~~R~~ 201 (217)
|....+|.-.|.|.+.+++ .+.|.+. +|..-+.-+| +.|.+++...+-+ +....++|=+.|--+. +
T Consensus 57 I~~~r~g~n~fcI~den~qEILSvt~dda~~YTV~c~g~~~t~~~~~~~~~~v--------~~~~~~~nlt~di~a~--~ 126 (292)
T PRK15372 57 IHSGLHGENYFCILDEDSQEILSVTLDDVGNYTVNCQGYSETHHLTMATEPGV--------ERTDITYNLTSDIDAA--A 126 (292)
T ss_pred hhcccCCCceEEEEcCCCceeEEEEEcCCCceEEEeCCcceEEEeeccCCCcc--------hhccCccccccCCCHH--H
Confidence 3446778888888887765 6677777 6656555444 5677777655432 2445677776665544 5
Q ss_pred HHHhhcCCC
Q 027870 202 YIKGLTGQA 210 (217)
Q Consensus 202 y~~~~~~~~ 210 (217)
||..|+...
T Consensus 127 yl~el~~~~ 135 (292)
T PRK15372 127 YLEELKQNP 135 (292)
T ss_pred HHHHhhcCc
Confidence 999998544
No 151
>PHA00672 hypothetical protein
Probab=22.68 E-value=4.3e+02 Score=21.88 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=43.1
Q ss_pred ccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcE
Q 027870 115 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYV 174 (217)
Q Consensus 115 f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~ 174 (217)
.+.--+|..+-+ .|.+|.....+++. ...+..--.|.-|||..--|.+-++...
T Consensus 59 ~LtG~~hkf~~~-ii~sG~itV~tdge-----~~rl~g~~~i~~~aG~KragyAHeDT~w 112 (152)
T PHA00672 59 ALTGALIKVSTV-LIFSGHATVFIGGE-----AVELRGYHVIPASAGRKQAFVAHADTDL 112 (152)
T ss_pred eeeeeeeEeeEE-EEecccEEEEeCCc-----EEEEecceeeecCCCcccceeeeccceE
Confidence 455667777777 89999999999876 6778888889999999988888776443
No 152
>PF10983 DUF2793: Protein of unknown function (DUF2793); InterPro: IPR021251 This entry is represented by Bacteriophage D3112, Orf54. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.67 E-value=2.1e+02 Score=21.64 Aligned_cols=42 Identities=21% Similarity=0.454 Sum_probs=27.6
Q ss_pred eCCCEEEeCCCCeeeeeeCCCCcEEE-----EEEEcCCCceEEeCCCC
Q 027870 151 KAGDLIVLPAGIYHRFTLDTSNYVKL-----MRLFVGEPVWTAYNRPQ 193 (217)
Q Consensus 151 ~~GDlIiIPaG~~H~F~~~~~~~~~a-----iRlF~~~~gW~~~~r~~ 193 (217)
..||.-+||+|-.=-+ ++-+..+-+ -+|+...+||.++.+..
T Consensus 29 ~~Gd~yiv~~~atGaW-aG~~g~iA~~~~g~W~f~~P~~GW~a~v~~~ 75 (87)
T PF10983_consen 29 AEGDRYIVPAGATGAW-AGQDGKIAAWQDGAWRFLTPRPGWRAWVADE 75 (87)
T ss_pred CCCCEEEECCCCCccc-ccCCCCEEEEECCeEEEeCCCCCcEEEEeCC
Confidence 4688888888732221 222344544 68899999999987654
No 153
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=22.46 E-value=1.6e+02 Score=21.90 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=10.1
Q ss_pred EEEEeCCCEEEe
Q 027870 147 RIWIKAGDLIVL 158 (217)
Q Consensus 147 ~i~v~~GDlIiI 158 (217)
++++.+||.++|
T Consensus 44 ~i~I~~GD~V~V 55 (75)
T COG0361 44 RIRILPGDVVLV 55 (75)
T ss_pred eEEeCCCCEEEE
Confidence 688889999877
No 154
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=22.28 E-value=57 Score=26.66 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=14.0
Q ss_pred EEEEeCCCEEEeCCCC
Q 027870 147 RIWIKAGDLIVLPAGI 162 (217)
Q Consensus 147 ~i~v~~GDlIiIPaG~ 162 (217)
.+.+++||.|+||..+
T Consensus 149 n~~L~~gD~I~Vp~~~ 164 (165)
T TIGR03027 149 NVELKPGDVLIIPESW 164 (165)
T ss_pred CceeCCCCEEEEeccc
Confidence 5889999999999864
No 155
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=22.24 E-value=1.5e+02 Score=26.30 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=39.3
Q ss_pred CccccccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEE
Q 027870 114 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLM 177 (217)
Q Consensus 114 ~f~~eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~ai 177 (217)
.-+..|+|-.-|-..+++|. |. ++++ ....||++.-+.++.|.-....+....|+
T Consensus 139 ~s~P~HtH~G~E~t~vl~G~--~s--de~G-----~y~vgD~~~~d~~v~H~piv~~~~eClcl 193 (216)
T COG3806 139 RSFPDHTHVGIERTAVLEGA--FS--DENG-----EYLVGDFTLADGTVQHSPIVLPPGECLCL 193 (216)
T ss_pred cccccccccceEEEEEEeec--cc--cCCC-----ccccCceeecCCccccccccCCCCCceEE
Confidence 45789999999998888775 32 3333 45579999999999998665544444443
No 156
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=22.09 E-value=3.6e+02 Score=22.07 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=25.6
Q ss_pred EEEeceEEEEEecCCCcEEEEEEeCCCEEEe----CCCCeeeeeeCCCC
Q 027870 128 YCLEGSGYFDVRDESDQWIRIWIKAGDLIVL----PAGIYHRFTLDTSN 172 (217)
Q Consensus 128 yileG~g~f~v~~~~d~wi~i~v~~GDlIiI----PaG~~H~F~~~~~~ 172 (217)
-|..|+++|.=. .+.|++||-+.+ ..++.|.|.....+
T Consensus 50 ~i~a~n~~~~P~-------~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g 91 (135)
T TIGR03096 50 NIRAFNVLNEPE-------ALVVKKGTPVKVTVENKSPISEGFSIDAYG 91 (135)
T ss_pred EEEeeeeEEcCC-------EEEECCCCEEEEEEEeCCCCccceEECCCC
Confidence 344566555432 799999999866 34588988876543
No 157
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=21.91 E-value=1.7e+02 Score=26.33 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=30.7
Q ss_pred cEEEEEEeCCCEEEeCCCCeeeeeeCCCC---c-EEEEEEEcCCCc
Q 027870 144 QWIRIWIKAGDLIVLPAGIYHRFTLDTSN---Y-VKLMRLFVGEPV 185 (217)
Q Consensus 144 ~wi~i~v~~GDlIiIPaG~~H~F~~~~~~---~-~~aiRlF~~~~g 185 (217)
+.+.+.++|||+++.=..+.|....+.++ + ..++|+..+...
T Consensus 207 ~~v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~~~~~ 252 (288)
T TIGR01762 207 SAVPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVPSFVH 252 (288)
T ss_pred ceeeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcCCCce
Confidence 57889999999999999999998765332 2 335676655443
No 158
>COG0756 Dut dUTPase [Nucleotide transport and metabolism]
Probab=21.63 E-value=94 Score=25.96 Aligned_cols=34 Identities=32% Similarity=0.674 Sum_probs=26.7
Q ss_pred EEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCe
Q 027870 127 RYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIY 163 (217)
Q Consensus 127 ryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~ 163 (217)
-|-.+|++-++++...+. +.+.||....||.|+.
T Consensus 20 ~y~t~gsAG~DLrA~~~~---~~i~pg~~~LVpTGl~ 53 (148)
T COG0756 20 KYATEGSAGYDLRAAEDE---VTIAPGERKLVPTGLA 53 (148)
T ss_pred eeecCCccceeeecccce---eEECCCCeEEecCCEE
Confidence 678899999999965432 7889999888887754
No 159
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=21.46 E-value=2.2e+02 Score=25.07 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=21.8
Q ss_pred EEEEEeCCCEEEeCCCCeeeeeeCC
Q 027870 146 IRIWIKAGDLIVLPAGIYHRFTLDT 170 (217)
Q Consensus 146 i~i~v~~GDlIiIPaG~~H~F~~~~ 170 (217)
..+..++||+|+-|..+.|....-.
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pVt 165 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPVT 165 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeecc
Confidence 4788899999999999999988743
No 160
>PLN02485 oxidoreductase
Probab=21.25 E-value=3e+02 Score=24.95 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=41.5
Q ss_pred cccccCCCceEEEEE--e-ceEEEEEecCCCcEEEEEEeCCCEEEeCCC-------------CeeeeeeCCCCcEEEEEE
Q 027870 116 YTEHIHADEEIRYCL--E-GSGYFDVRDESDQWIRIWIKAGDLIVLPAG-------------IYHRFTLDTSNYVKLMRL 179 (217)
Q Consensus 116 ~~eH~H~~dEiryil--e-G~g~f~v~~~~d~wi~i~v~~GDlIiIPaG-------------~~H~F~~~~~~~~~aiRl 179 (217)
+.-..|+|--.+=+| + +.+=..|...+|+|+.+...+|-+|| --| +.||....+...=..|-+
T Consensus 205 ~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi~V~p~pg~~vV-NiGD~L~~~TnG~~~St~HRVv~~~~~~R~Si~~ 283 (329)
T PLN02485 205 IGCGAHTDYGLLTLVNQDDDITALQVRNLSGEWIWAIPIPGTFVC-NIGDMLKIWSNGVYQSTLHRVINNSPKYRVCVAF 283 (329)
T ss_pred cccccccCCCeEEEEeccCCCCeeeEEcCCCcEEECCCCCCcEEE-EhHHHHHHHHCCEeeCCCceecCCCCCCeEEEEE
Confidence 344568765554444 2 44446776667899999998887764 444 779988654433444555
Q ss_pred EcC
Q 027870 180 FVG 182 (217)
Q Consensus 180 F~~ 182 (217)
|..
T Consensus 284 F~~ 286 (329)
T PLN02485 284 FYE 286 (329)
T ss_pred Eec
Confidence 544
No 161
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.06 E-value=3.3e+02 Score=21.02 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=34.6
Q ss_pred CceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeC
Q 027870 123 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD 169 (217)
Q Consensus 123 ~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~ 169 (217)
..|+.-|+.|+..+.+.+ .+.|- .-.+|..+-||++...-....
T Consensus 41 ~~E~Mtvv~Gal~v~lpg-s~dWq--~~~~Ge~F~VpgnS~F~lqVa 84 (94)
T COG3123 41 APEEMTVVSGALTVLLPG-SDDWQ--VYTAGEVFNVPGNSEFDLQVA 84 (94)
T ss_pred CceEEEEEeeEEEEEcCC-CcccE--EecCCceEEcCCCCeEEEEEe
Confidence 568889999999999885 46774 456999999999977655443
No 162
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=20.49 E-value=1.6e+02 Score=24.68 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=31.2
Q ss_pred EEEEEeceEEEEEecC--CCcEEEEEEeCCCEEEeCCCCeeee
Q 027870 126 IRYCLEGSGYFDVRDE--SDQWIRIWIKAGDLIVLPAGIYHRF 166 (217)
Q Consensus 126 iryileG~g~f~v~~~--~d~wi~i~v~~GDlIiIPaG~~H~F 166 (217)
+.+=|--+..|.++.. ++....+.++.||+|+.-...++.|
T Consensus 124 ~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~ 166 (169)
T TIGR00568 124 LSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGESRLAF 166 (169)
T ss_pred EEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCchhccc
Confidence 3444566788888864 3457899999999999988777765
No 163
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=20.31 E-value=3.1e+02 Score=25.55 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=36.5
Q ss_pred cccCCCceEEEEE--eceEEEEEecCC-CcEEEEEEeCCCEEEeCCC-------------CeeeeeeCCCCcEEEEEEEc
Q 027870 118 EHIHADEEIRYCL--EGSGYFDVRDES-DQWIRIWIKAGDLIVLPAG-------------IYHRFTLDTSNYVKLMRLFV 181 (217)
Q Consensus 118 eH~H~~dEiryil--eG~g~f~v~~~~-d~wi~i~v~~GDlIiIPaG-------------~~H~F~~~~~~~~~aiRlF~ 181 (217)
-..|+|--.+=+| ++.+=..|...+ ++|+.+...+|-+|+. -| +.||....+...-..|-+|.
T Consensus 214 ~~~HTD~g~lTlL~Qd~v~GLQV~~~~~~~Wi~Vpp~pgalVVN-iGD~L~~~TNG~~kSt~HRVv~~~~~~R~Si~~F~ 292 (358)
T PLN02515 214 LKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQPVEGAFVVN-LGDHGHYLSNGRFKNADHQAVVNSNCSRLSIATFQ 292 (358)
T ss_pred CCCCCCCCeEEEEecCCCCceEEEECCCCeEEECCCCCCeEEEE-ccHHHHHHhCCeeeeecceEECCCCCCEEEEEEEe
Confidence 3457665444333 564445664333 3799988777665543 33 77887654433344455555
Q ss_pred CC
Q 027870 182 GE 183 (217)
Q Consensus 182 ~~ 183 (217)
.+
T Consensus 293 ~P 294 (358)
T PLN02515 293 NP 294 (358)
T ss_pred cC
Confidence 53
No 164
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=20.26 E-value=1e+02 Score=27.32 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=25.9
Q ss_pred EEEEEEeCCCEEEeCCCCeeeeeeCCCCc---EEEEEEE
Q 027870 145 WIRIWIKAGDLIVLPAGIYHRFTLDTSNY---VKLMRLF 180 (217)
Q Consensus 145 wi~i~v~~GDlIiIPaG~~H~F~~~~~~~---~~aiRlF 180 (217)
.+.+.+++||+++.-..+.|+-..+.++. ...+++.
T Consensus 210 ~v~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~ 248 (277)
T TIGR02408 210 ISTFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFN 248 (277)
T ss_pred ceeeccCCceEEEEccccccCCCCCCCCCcceeEEEEEe
Confidence 34678899999999999999987543332 3344444
No 165
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=20.16 E-value=1.9e+02 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=26.6
Q ss_pred eEEEEEec--CCCcEEEEEEeCCCEEEeCCC-CeeeeeeCC
Q 027870 133 SGYFDVRD--ESDQWIRIWIKAGDLIVLPAG-IYHRFTLDT 170 (217)
Q Consensus 133 ~g~f~v~~--~~d~wi~i~v~~GDlIiIPaG-~~H~F~~~~ 170 (217)
.|.+.+.+ .+-.=+++.+.+||+++..++ ..|.-+...
T Consensus 113 ~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~~~~~Hgvtpv~ 153 (171)
T PF12851_consen 113 GGRLELPGLDPNILGVAFAYQPGTVLIFCAKRELHGVTPVE 153 (171)
T ss_pred CceEeccccccccCCEEEecCCCcEEEEcccceeeecCccc
Confidence 45666644 111235899999999999999 777776555
No 166
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.02 E-value=4.1e+02 Score=20.37 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=39.9
Q ss_pred cccCCCceEEEEEeceEEEEEecCCCcEEEEEEeCCCEEEeCCCCeeeeeeCCCCcEEEEEE
Q 027870 118 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRL 179 (217)
Q Consensus 118 eH~H~~dEiryileG~g~f~v~~~~d~wi~i~v~~GDlIiIPaG~~H~F~~~~~~~~~aiRl 179 (217)
...|.+.-...+.+|...|.++...+ ...+..++. |.-|..|...+.-+.....|++
T Consensus 15 ~~~~~dfial~L~~G~l~~~~~~G~~---~~~~~~~~~--i~dg~wh~v~~~r~~~~~~L~V 71 (131)
T PF00054_consen 15 SKDGKDFIALELRDGRLEFRYNLGSG---PASLRSPQK--INDGKWHTVSVSRNGRNGSLSV 71 (131)
T ss_dssp SSTTSSEEEEEEETTEEEEEEESSSE---EEEEEESSE--TTSSSEEEEEEEEETTEEEEEE
T ss_pred cCCCCCEEEEEEECCEEEEEEeCCCc---cceecCCCc--cCCCcceEEEEEEcCcEEEEEE
Confidence 33445667889999999999984332 566667776 8888888887766555444443
Done!