BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027871
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 11/185 (5%)
Query: 35 EKDDEQQQNCPVCKANISVASLVPLYGRGGISSA-SDSKKPNLGEVVPSRPHPSALNTSV 93
E D+QQ CPVCKA +S +L+PLYGRGG S+ S+ K PNLG V+P RP PS
Sbjct: 77 ENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRP-PSPRCGGH 135
Query: 94 TSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLM 153
T+ + +Q L +Q Q+ P + GS+ + S GG AT +
Sbjct: 136 FLLPTTDSNPSQLLQRRGYQQQSQTRQ-----PAYQGSYMSSPMLSPGG-ATANMLQ--H 187
Query: 154 GMLGGMTLERIFGGSTTSLFTYP-SQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVL 212
M+G + RIFG S+T+++TYP S +L +S++PR+RRQ + D+SL R+ FLFCC V
Sbjct: 188 SMIGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVT 247
Query: 213 CLLLF 217
CL+LF
Sbjct: 248 CLILF 252
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 100/183 (54%), Gaps = 21/183 (11%)
Query: 38 DEQQQN--CPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSALNTSVTS 95
DE Q++ CPVCK+ +S ++LVPLYGRG ++ + K VP RP + +
Sbjct: 85 DEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPN 139
Query: 96 SSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGM 155
S ++ +D SQ F++PQ +Y ++S+SL A + +P+M M
Sbjct: 140 SPYAS--------TDLRLSQRVHFNSPQ--EGYYPVSGVMSSNSLSYSAVL---DPVMVM 186
Query: 156 LGGMTLERIFGGSTTSLFTYP-SQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCL 214
+G M R+FG F YP + +L ++ PR+RR+ M+ DKSL R+ F CC+VLCL
Sbjct: 187 VGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCL 246
Query: 215 LLF 217
LLF
Sbjct: 247 LLF 249
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 93/172 (54%), Gaps = 30/172 (17%)
Query: 38 DEQQQNCPVCKANISVASLVPLYGRGGISSAS---DSKKPNLGEVVPSRPHPSALNTSVT 94
D+ Q NCPVCK+NI++ SLVPLYGRG S +S K+ L +P RP PSAL +T
Sbjct: 82 DQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPIT 141
Query: 95 SSST---STRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNP 151
S+S+ S +HQT +P+FHN QY P + S+ L +SF P
Sbjct: 142 SASSLNPSLQHQT----------LSPSFHNHQYSPRGF---TTTESTDLANAVMMSFLYP 188
Query: 152 LMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVS 203
++GM G + RIFG T ++ P QS ++ M+ +KSLNRVS
Sbjct: 189 VIGMFGDLVYTRIFGTFTNTI-AQPYQS----------QRMMQREKSLNRVS 229
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 58/201 (28%)
Query: 22 QKWSPTSAPTNVPEKDDEQQQN-----CPVCKANISVASLVPLYGRGGISSASDSKKPNL 76
KW T A N ++ D+ CPVCK+++S A+LVP+YGRG K P
Sbjct: 46 HKW--TYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG-------QKAPQS 96
Query: 77 GEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALA 136
G VPSRP T R Q+L +SQ + P
Sbjct: 97 GSNVPSRP---------TGPVYDLRGVGQRLGEG--ESQRYMYRMP-------------- 131
Query: 137 SSSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELD 196
+P+MG++ M R+FG S++++ Y N R RR+ M+ +
Sbjct: 132 -------------DPVMGVVCEMVYRRLFGESSSNMAPYRDM------NVRSRRRAMQAE 172
Query: 197 KSLNRVSLFLFCCLVLCLLLF 217
+SL+RV LFL C + +CL LF
Sbjct: 173 ESLSRVYLFLLCFMFMCLFLF 193
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1
SV=1
Length = 180
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 40 QQQNCPVCKANISVASLVPLYGRG 63
++Q CPVCKA IS +VPLYGRG
Sbjct: 60 ERQECPVCKAGISREKVVPLYGRG 83
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5
PE=2 SV=1
Length = 180
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 41 QQNCPVCKANISVASLVPLYGRG 63
+Q CPVCKA IS +VPLYGRG
Sbjct: 61 RQECPVCKAGISREKVVPLYGRG 83
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1
SV=1
Length = 180
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 41 QQNCPVCKANISVASLVPLYGRG 63
+Q CPVCKA IS +VPLYGRG
Sbjct: 61 RQECPVCKAGISREKVVPLYGRG 83
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 42 QNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSAL 89
Q CPVCK+ I +VP+YGRGG SS K P + S P P +
Sbjct: 61 QVCPVCKSAIDGNKVVPIYGRGGDSSDPRKKVPPRPKGQRSEPPPQSF 108
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 41 QQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPH 85
+Q CPVCKA IS ++PLYGRG +K P RP
Sbjct: 75 RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRPQ 113
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 41 QQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPH 85
+Q CPVCKA IS ++PLYGRG +K P RP
Sbjct: 73 RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRPQ 111
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 41 QQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPH 85
+Q CPVCKA IS ++PLYGRG +K P RP
Sbjct: 73 RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRPQ 111
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 41 QQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPH 85
+Q CPVCKA IS ++PLYGRG +K P RP
Sbjct: 73 RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRPQ 111
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 41 QQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPH 85
+Q CPVCKA IS ++PLYGRG +K P RP
Sbjct: 75 RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRPQ 113
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 41 QQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPH 85
+Q CPVCKA IS ++PLYGRG ++ + P E P RP
Sbjct: 73 RQVCPVCKAGISRDKVIPLYGRG----STGQQDPR--EKTPPRPQ 111
>sp|Q8JIY1|ADA10_XENLA Disintegrin and metalloproteinase domain-containing protein 10
OS=Xenopus laevis GN=adam10 PE=2 SV=1
Length = 749
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 111 FFQSQAPAFHNPQY------FPHHYGSHAALASSSL 140
FF+ QA FH+ Y +PH YGS A SS+
Sbjct: 142 FFKDQAVPFHSVMYHEDDIKYPHKYGSEGGCADSSV 177
>sp|P97386|DNLI3_MOUSE DNA ligase 3 OS=Mus musculus GN=Lig3 PE=1 SV=2
Length = 1015
Score = 31.2 bits (69), Expect = 6.1, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 58 PLYGRGGISSASDSK-------KPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHSD 110
P+ G I+S + K KPN E PS P P TS+++S +H+ L +
Sbjct: 212 PVKGASFITSTNPRKFSGFSAAKPNNSEQAPSSPAPG---TSLSASKCDPKHKDCLLR-E 267
Query: 111 FFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMA 144
F + A NP Y H L S GG +
Sbjct: 268 FRKLCAMVAENPSYNTKTQIIHDFLQKGSTGGFS 301
>sp|P51659|DHB4_HUMAN Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens
GN=HSD17B4 PE=1 SV=3
Length = 736
Score = 30.4 bits (67), Expect = 10.0, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 59 LYGRGGISSASDSKKPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHSDFFQSQAPA 118
L G GG S K + +P+RP P A+ T TS + + + +L D+
Sbjct: 463 LVGSGGFGGKRTSDKVKVAVAIPNRP-PDAVLTDTTSLNQAALY---RLSGDW------- 511
Query: 119 FHNPQYFPHHYGSHAALASSSLGGMATISF 148
NP + ++ S A L G+ T F
Sbjct: 512 --NPLHIDPNFASLAGFDKPILHGLCTFGF 539
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,669,232
Number of Sequences: 539616
Number of extensions: 3086955
Number of successful extensions: 10231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 10165
Number of HSP's gapped (non-prelim): 100
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)