Citrus Sinensis ID: 027872

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDEGSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPKEEVYEEEDSEETEEDRDNVEDGFRYGENNEDDDEETEYED
Secondary Structure (PSIPRED)
cccccccccccccccccccEEcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEccccccccEEEcHHHHHHHHHHccccccccccccccccccccccccccHHHccccccccccEEccccccccEEccHHHHHHHHHHcccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEcccccccccccEEccccccccccccccc
Coil and Loop (DISEMBL)
mkthsqenyhicpypdcgkryaHEYKLKNHiashheknaavevpryatpperitktpkppagvygsasserpyacpyegceKAYIHEYKLKLHlkrehpghmsdenaenattnadnemdegsdqdayagkrvngksqkqsrakpnlkmppakvtqrksstpspatlnvvrkqqwtpkeevyeeedseeteedrdnvedgfrygennedddeeteyed
Flexible Loop (DISEMBL)
mkthsqenyhicpypdCGKRYAHEYKLKNHIashheknaavevpryatpperitktpkppagvygsasserpyaCPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDEGSDQDayagkrvngksqkqsrakpnlkmppakvtqrksstpspatlnvvrkqqwtpkeevyeeedseeteedrdnvedgfrygennedddeeteyed
Low Complexity Region (SEG)
MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSdenaenattnadneMDEGSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPKeevyeeedseeteeDRDNVEDGFRYGennedddeeteyed
Disordered region (IsUnstruct)
********YHICPYPDCGKRYAHEYKLKNHIA****************************************YACPYEGCEKAYIHEYKLKLHL***************************************************************************************************************************
Disordered Region (DISOPRED)
MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPR***********************SERPYACPYEGCEKAYIHEYKLKLHLKREHPG*********************************************************************************************************************
Disordered Region (DISEMBL)
********YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTP*************RPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDEGSDQDAYA************************************TLNVVRKQQWT********************VEDGFRYGEN************
Disordered Region (DISPRO)
*****QENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKRE*******************************************************************TLNV*RKQQWTPKE*VYE*********DRDNVEDGFRYG**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDEGSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPKEEVYEEEDSEETEEDRDNVEDGFRYGENNEDDDEETEYED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q2V3L3	387	Uncharacterized zinc fing	yes	no	0.921	0.516	0.629	2e-59
B4F7E9	568	Zinc finger protein 76 OS	yes	no	0.423	0.161	0.313	9e-07
P36508	570	Zinc finger protein 76 OS	yes	no	0.423	0.161	0.313	1e-06
Q8BMU0	568	Zinc finger protein 76 OS	yes	no	0.423	0.161	0.313	2e-06
P52747	638	Zinc finger protein 143 O	no	no	0.423	0.144	0.294	3e-05
Q14872	753	Metal regulatory transcri	no	no	0.285	0.082	0.273	3e-05
Q1LYE3	623	Zinc finger protein 143 O	yes	no	0.502	0.174	0.264	4e-05
Q07243	675	Metal regulatory transcri	no	no	0.285	0.091	0.273	4e-05
Q92664	365	Transcription factor IIIA	no	no	0.350	0.208	0.256	6e-05
Q91853	565	Zinc finger protein 143 O	N/A	no	0.423	0.162	0.294	0.0002

>sp|Q2V3L3|Y4634_ARATH Uncharacterized zinc finger protein At4g06634 OS=Arabidopsis thaliana GN=At4g06634 PE=1 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/216 (62%), Positives = 157/216 (72%), Gaps = 16/216 (7%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           MKTHSQENYHICPY  C KRYAHEYKLKNH+A++HEKN   E P+Y  P E++ +T K P
Sbjct: 159 MKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYHEKNGGGETPKYTPPAEKVLRTVKTP 218

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNAD----- 115
           A V G  SS+RPYACPYEGCEKAYIHEYKLKLHLKREHPGH+ +ENA+  T N       
Sbjct: 219 ATVCG-PSSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHLQEENADTPTLNKHNGNDR 277

Query: 116 NEMDEGSDQDAYAGKRVNGKSQ---KQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQ 172
           NE+D+GSDQD Y     NGK Q   +QSRAKPN++ PPAKV  +K ST SPA   + +K 
Sbjct: 278 NEIDDGSDQDVYRKHASNGKGQTHKQQSRAKPNMRTPPAKVG-KKGSTSSPAKARIAKK- 335

Query: 173 QWTPK-----EEVYEEEDSEETEEDRDNVEDGFRYG 203
            W  K      E  EEEDSEETEEDRDNVEDG+R+G
Sbjct: 336 PWQAKETFEEVEREEEEDSEETEEDRDNVEDGWRFG 371

Arabidopsis thaliana (taxid: 3702)

>sp|B4F7E9|ZNF76_RAT Zinc finger protein 76 OS=Rattus norvegicus GN=Znf76 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 10/102 (9%)

Query: 2   KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
           + H+ +  + C +P CGK +A  Y LK+H+ +H       E P Y  P E  +K  K   
Sbjct: 187 RAHTGDRSYRCDFPSCGKAFATGYGLKSHVRTH-----TGEKP-YKCPEELCSKAFKTSG 240

Query: 62  GV---YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
            +     + + ERP+ CP+EGC +++      K+H+ R H G
Sbjct: 241 DLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHV-RTHTG 281

May be involved in transcriptional regulation.

Rattus norvegicus (taxid: 10116)

>sp|P36508|ZNF76_HUMAN Zinc finger protein 76 OS=Homo sapiens GN=ZNF76 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 10/102 (9%)

Query: 2   KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
           + H+ +  + C +P CGK +A  Y LK+H+ +H       E P Y  P E  +K  K   
Sbjct: 187 RAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTH-----TGEKP-YKCPEELCSKAFKTSG 240

Query: 62  GV---YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
            +     + + ERP+ CP+EGC +++      K+H+ R H G
Sbjct: 241 DLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHV-RTHTG 281

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8BMU0|ZNF76_MOUSE Zinc finger protein 76 OS=Mus musculus GN=Znf76 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 10/102 (9%)

Query: 2   KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
           + H+ +  + C +P CGK +A  Y LK+H+ +H       E P Y  P E  +K  K   
Sbjct: 187 RAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTH-----TGEKP-YKCPEELCSKAFKTSG 240

Query: 62  GV---YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
            +     + + ERP+ CP+EGC +++      K+H+ R H G
Sbjct: 241 DLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHV-RTHTG 281

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|P52747|ZN143_HUMAN Zinc finger protein 143 OS=Homo sapiens GN=ZNF143 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 10/102 (9%)

Query: 2   KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
           ++H+ +  + C +  CGK +A  Y LK+H+ +H       E P Y    +  TK+ K   
Sbjct: 259 RSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTH-----TGEKP-YRCSEDNCTKSFKTSG 312

Query: 62  GV---YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
            +     + + ERP+ CP+EGC +++      K+H+ R H G
Sbjct: 313 DLQKHIRTHTGERPFKCPFEGCGRSFTTSNIRKVHV-RTHTG 353

Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8.

Homo sapiens (taxid: 9606)

>sp|Q14872|MTF1_HUMAN Metal regulatory transcription factor 1 OS=Homo sapiens GN=MTF1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 33/95 (34%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           ++TH+ E    C +  CGK +A  + LK H+ +H                          
Sbjct: 250 IRTHTGEKPFRCDHDGCGKAFAASHHLKTHVRTH-------------------------- 283

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 95
                  + ERP+ CP  GCEK +  +Y LK H+K
Sbjct: 284 -------TGERPFFCPSNGCEKTFSTQYSLKSHMK 311

Activates the metallothionein I promoter. Binds to the metal responsive element (MRE).

Homo sapiens (taxid: 9606)

>sp|Q1LYE3|ZN143_DANRE Zinc finger protein 143 OS=Danio rerio GN=znf143 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 12/121 (9%)

Query: 2   KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
           ++H+ +  +IC +  CGK++A  Y LK+H+ +H       E P Y        K+ K   
Sbjct: 252 RSHTGDKPYICDHLGCGKKFATGYGLKSHVRTH-----TGEKP-YRCQELNCLKSFKTSG 305

Query: 62  GVYG---SASSERPYACPYEGCEKAYIHEYKLKLHLKR---EHPGHMSDENAENATTNAD 115
            +     + + E+P+ CP+EGC +++      K+H++    E P + ++ N   A  +A 
Sbjct: 306 DLQKHTRTHTGEKPFKCPFEGCGRSFTTSNIRKVHIRTHTGERPYYCAEPNCGRAFASAT 365

Query: 116 N 116
           N
Sbjct: 366 N 366

Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the activator element (AE) motif of the selenocysteine tRNA gene promoter.

Danio rerio (taxid: 7955)

>sp|Q07243|MTF1_MOUSE Metal regulatory transcription factor 1 OS=Mus musculus GN=Mtf1 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 33/95 (34%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           ++TH+ E    C +  CGK +A  + LK H+ +H                          
Sbjct: 249 IRTHTGEKPFRCDHDGCGKAFAASHHLKTHVRTH-------------------------- 282

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 95
                  + ERP+ CP  GCEK +  +Y LK H+K
Sbjct: 283 -------TGERPFFCPSNGCEKTFSTQYSLKSHMK 310

Activates the metallothionein I promoter. Binds to the metal responsive element (MRE).

Mus musculus (taxid: 10090)

>sp|Q92664|TF3A_HUMAN Transcription factor IIIA OS=Homo sapiens GN=GTF3A PE=1 SV=3

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 37/113 (32%)

Query: 11  ICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSE 70
           IC +PDC   Y+  +KL  H+  H                                 + E
Sbjct: 41  ICSFPDCSANYSKAWKLDAHLCKH---------------------------------TGE 67

Query: 71  RPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDEGSD 123
           RP+ C YEGC KA+I +Y    HL R    H  ++    A    D + +  S+
Sbjct: 68  RPFVCDYEGCGKAFIRDY----HLSRHILTHTGEKPFVCAANGCDQKFNTKSN 116

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's. May initiate transcription of the 5S ribosomal RNA gene and maintain the stability of transcription of other genes.

Homo sapiens (taxid: 9606)

>sp|Q91853|ZN143_XENLA Zinc finger protein 143 OS=Xenopus laevis GN=znf143 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 10/102 (9%)

Query: 2   KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
           ++H+ +  + C +  C K +A  Y LK+H+ +H       E P Y    E  TK+ K   
Sbjct: 252 RSHTGDRPYQCDHGSCRKAFATGYGLKSHVRTH-----TGEKP-YRCSEENCTKSFKTSG 305

Query: 62  GV---YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
            +     + + ERP+ CP+EGC +++      K+H+ R H G
Sbjct: 306 DLQKHVRTHTGERPFKCPFEGCGRSFTTSNIRKVHI-RTHTG 346

Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the activator element (AE) motif of the selenocysteine tRNA gene promoter.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
224129640	378	predicted protein [Populus trichocarpa]	0.940	0.539	0.782	3e-84
118489341	375	unknown [Populus trichocarpa x Populus d	0.940	0.544	0.770	4e-83
225448166	372	PREDICTED: uncharacterized zinc finger p	0.930	0.543	0.793	1e-81
147819063	355	hypothetical protein VITISV_038786 [Viti	0.921	0.563	0.801	7e-81
255576241	372	nucleic acid binding protein, putative [	0.889	0.518	0.743	3e-80
359486172	371	PREDICTED: uncharacterized zinc finger p	0.926	0.541	0.788	2e-79
388503846	375	unknown [Medicago truncatula]	0.944	0.546	0.746	6e-79
217074626	219	unknown [Medicago truncatula]	0.944	0.936	0.746	1e-78
255648191	371	unknown [Glycine max]	0.930	0.544	0.743	1e-76
388522029	375	unknown [Lotus japonicus]	0.935	0.541	0.727	5e-76

>gi|224129640|ref|XP_002328766.1| predicted protein [Populus trichocarpa] gi|222839064|gb|EEE77415.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/207 (78%), Positives = 174/207 (84%), Gaps = 3/207 (1%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           MKTHSQENYHICPYP+CGKRYAHEYKLKNHI SHHEKN   EV +YATPPERI K  K P
Sbjct: 162 MKTHSQENYHICPYPECGKRYAHEYKLKNHIGSHHEKNPTPEVVKYATPPERIPKNAKTP 221

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDE 120
            GVYGSASS+RPY CPYEGCEK YIHEYKLKLHL+REHPGHM+DENAENAT NADNE+DE
Sbjct: 222 PGVYGSASSDRPYICPYEGCEKDYIHEYKLKLHLRREHPGHMADENAENATPNADNELDE 281

Query: 121 GSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPK--E 178
            SDQDAY GKRVNGKSQKQSR+KPNLKMPP K+ QRK S+PSPATLNVV+K  WT K   
Sbjct: 282 ASDQDAYGGKRVNGKSQKQSRSKPNLKMPPVKIRQRKGSSPSPATLNVVKK-PWTIKDET 340

Query: 179 EVYEEEDSEETEEDRDNVEDGFRYGEN 205
              EE+  E  EEDRDN EDG+RYG N
Sbjct: 341 YEEEEDSEETEEEDRDNAEDGWRYGGN 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489341|gb|ABK96475.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 158/205 (77%), Positives = 173/205 (84%), Gaps = 1/205 (0%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           MKTHSQENYHICPY +CGKRYAHEYKLKNHIASHHEKN   +V RYATPPERI K PKPP
Sbjct: 161 MKTHSQENYHICPYSECGKRYAHEYKLKNHIASHHEKNPTPDVVRYATPPERILKNPKPP 220

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDE 120
           +GVYGSASS+RPY CPYEGCEK YIHEYKLKLHL+REHP HM+DENAENA +NADNEMDE
Sbjct: 221 SGVYGSASSDRPYICPYEGCEKDYIHEYKLKLHLRREHPDHMADENAENANSNADNEMDE 280

Query: 121 GSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPKEEV 180
            SDQDAY GKRVNGKSQK SR KPNLK PP K+ QRK S+ SPATLNV++K  W  K++ 
Sbjct: 281 ASDQDAYGGKRVNGKSQKHSRPKPNLKTPPVKIRQRKGSSSSPATLNVMKK-PWPVKDDT 339

Query: 181 YEEEDSEETEEDRDNVEDGFRYGEN 205
           YEE+  E  EED DN EDG+RYG N
Sbjct: 340 YEEDSEETEEEDHDNAEDGWRYGGN 364

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448166|ref|XP_002265428.1| PREDICTED: uncharacterized zinc finger protein At4g06634-like isoform 1 [Vitis vinifera]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/203 (79%), Positives = 182/203 (89%), Gaps = 1/203 (0%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           MKTHSQENYHICPYPDCGKRYAHEYKLKNHI SHHEKN+ ++VP+Y  P E++TKTPKP 
Sbjct: 157 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIMSHHEKNSVMDVPKYVPPAEKLTKTPKPS 216

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDE 120
            GVYGSA+S+RPY+CPYEGCEK+YIHEYKLKLHL+REHPGH+SDENAENA  N DNE DE
Sbjct: 217 GGVYGSAASDRPYSCPYEGCEKSYIHEYKLKLHLRREHPGHISDENAENAQANIDNEPDE 276

Query: 121 GSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPKEEV 180
           GSDQDAY GKR NGKSQK S+AK +LKMPP+KVTQRK+S P+PA LNV++K QW  KEE+
Sbjct: 277 GSDQDAYVGKRGNGKSQKASKAKSSLKMPPSKVTQRKASNPAPANLNVIKK-QWPVKEEI 335

Query: 181 YEEEDSEETEEDRDNVEDGFRYG 203
           YEEEDSEETEEDRDNVEDG+RY 
Sbjct: 336 YEEEDSEETEEDRDNVEDGWRYA 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819063|emb|CAN73771.1| hypothetical protein VITISV_038786 [Vitis vinifera]

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 162/202 (80%), Positives = 182/202 (90%), Gaps = 2/202 (0%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           MKTHSQENYHICPYPDCGKRYAHEYKLKNHI SHHEK + ++VP+Y  P E++TKTPKP 
Sbjct: 141 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIMSHHEK-SVMDVPKYVPPAEKLTKTPKPS 199

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDE 120
            GVYGSA+S+RPY+CPYEGCEK+YIHEYKLKLHL+REHPGH+SDENAENA  N DNE DE
Sbjct: 200 GGVYGSAASDRPYSCPYEGCEKSYIHEYKLKLHLRREHPGHISDENAENAQANIDNEPDE 259

Query: 121 GSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPKEEV 180
           GSDQDAY GKR NGKSQK S+AKPNLKMPP+KVTQRK+S P+PA LNV++K QW  KEE+
Sbjct: 260 GSDQDAYVGKRGNGKSQKASKAKPNLKMPPSKVTQRKASNPAPANLNVIKK-QWPVKEEI 318

Query: 181 YEEEDSEETEEDRDNVEDGFRY 202
           YEEEDSEETEEDRDNVEDG+RY
Sbjct: 319 YEEEDSEETEEDRDNVEDGWRY 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576241|ref|XP_002529014.1| nucleic acid binding protein, putative [Ricinus communis] gi|223531554|gb|EEF33384.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/203 (74%), Positives = 173/203 (85%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           MKTHSQENYHICPYP+CGKRYAHEYKLKNH+++HHEK++ VE  +YATPPE++TK  KP 
Sbjct: 157 MKTHSQENYHICPYPECGKRYAHEYKLKNHVSAHHEKHSTVETVKYATPPEKVTKVSKPS 216

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDE 120
           AGVY + + +RPYACPYEGC KAYIHEYKLKLHL++EHPGHMSDENAENA+ NADNEMDE
Sbjct: 217 AGVYATPTLDRPYACPYEGCIKAYIHEYKLKLHLRKEHPGHMSDENAENASPNADNEMDE 276

Query: 121 GSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPKEEV 180
           GSDQDAYA K VNGK+QKQSR KPNLKMPPAK+TQRK S+P  ATLNVV+K     +E  
Sbjct: 277 GSDQDAYAEKHVNGKTQKQSRPKPNLKMPPAKLTQRKGSSPHRATLNVVKKPWPVKEETY 336

Query: 181 YEEEDSEETEEDRDNVEDGFRYG 203
            EE+  E  EEDRDN EDG+RYG
Sbjct: 337 EEEDSEETEEEDRDNAEDGWRYG 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486172|ref|XP_003633405.1| PREDICTED: uncharacterized zinc finger protein At4g06634-like isoform 2 [Vitis vinifera] gi|297739551|emb|CBI29733.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/203 (78%), Positives = 181/203 (89%), Gaps = 2/203 (0%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           MKTHSQENYHICPYPDCGKRYAHEYKLKNHI SHHEK + ++VP+Y  P E++TKTPKP 
Sbjct: 157 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIMSHHEK-SVMDVPKYVPPAEKLTKTPKPS 215

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMDE 120
            GVYGSA+S+RPY+CPYEGCEK+YIHEYKLKLHL+REHPGH+SDENAENA  N DNE DE
Sbjct: 216 GGVYGSAASDRPYSCPYEGCEKSYIHEYKLKLHLRREHPGHISDENAENAQANIDNEPDE 275

Query: 121 GSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPKEEV 180
           GSDQDAY GKR NGKSQK S+AK +LKMPP+KVTQRK+S P+PA LNV++K QW  KEE+
Sbjct: 276 GSDQDAYVGKRGNGKSQKASKAKSSLKMPPSKVTQRKASNPAPANLNVIKK-QWPVKEEI 334

Query: 181 YEEEDSEETEEDRDNVEDGFRYG 203
           YEEEDSEETEEDRDNVEDG+RY 
Sbjct: 335 YEEEDSEETEEDRDNVEDGWRYA 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503846|gb|AFK39989.1| unknown [Medicago truncatula]

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 175/209 (83%), Gaps = 4/209 (1%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVP-RYATPP-ERITKTPK 58
           MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK+  ++VP +YATPP E+ TKT +
Sbjct: 157 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPIDVPIKYATPPSEKQTKTAR 216

Query: 59  PPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATT-NADNE 117
           P    YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH++DENA +A   NA+NE
Sbjct: 217 PSGATYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENE 276

Query: 118 MDEGSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPK 177
           MDE SD DAY GKR NGKSQ+QSR KP+LKMPP+KV QRK STP+PAT N+ +K  W  K
Sbjct: 277 MDEASDHDAYGGKRSNGKSQRQSRPKPSLKMPPSKVAQRKGSTPTPATFNMAKK-PWPVK 335

Query: 178 EEVYEEEDSEETEEDRDNVEDGFRYGENN 206
           EE Y+E+  E  EEDRDNVEDG+RY  NN
Sbjct: 336 EETYDEDSEETEEEDRDNVEDGWRYAGNN 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074626|gb|ACJ85673.1| unknown [Medicago truncatula]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 175/209 (83%), Gaps = 4/209 (1%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVP-RYATPP-ERITKTPK 58
           MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK+  ++VP +YATPP E+ TKT +
Sbjct: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPIDVPIKYATPPSEKQTKTAR 60

Query: 59  PPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATT-NADNE 117
           P    YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH++DENA +A   NA+NE
Sbjct: 61  PSGATYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENE 120

Query: 118 MDEGSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPK 177
           MDE SD DAY GKR NGKSQ+QSR KP+LKMPP+KV QRK STP+PAT N+ +K  W  K
Sbjct: 121 MDEASDHDAYGGKRSNGKSQRQSRPKPSLKMPPSKVAQRKGSTPTPATFNMAKK-PWPVK 179

Query: 178 EEVYEEEDSEETEEDRDNVEDGFRYGENN 206
           EE Y+E+  E  EEDRDNVEDG+RY  NN
Sbjct: 180 EETYDEDSEETEEEDRDNVEDGWRYAGNN 208

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648191|gb|ACU24549.1| unknown [Glycine max]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 172/207 (83%), Gaps = 5/207 (2%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPP-ERITKTPKP 59
           MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNA+V+V +Y TPP E+ TKTPKP
Sbjct: 157 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDVTKYTTPPSEKQTKTPKP 216

Query: 60  PAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMD 119
             G YGSASS+RPYACPY+GCEKAYIHEYKL+LHLKREHPG M+DENAE+A  N DNEMD
Sbjct: 217 SGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMADENAEHAQANVDNEMD 276

Query: 120 EGSDQDAYAGKRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQQWTPKEE 179
           E SD DAY  KR NGK QKQS+ KPNLK+PP+K+ +RK STPS      V K  W  K+E
Sbjct: 277 EASDHDAYVAKRSNGKIQKQSKPKPNLKLPPSKIAKRKLSTPSL----TVNKNSWPVKDE 332

Query: 180 VYEEEDSEETEEDRDNVEDGFRYGENN 206
            ++EEDSEETEEDRDNVEDG+RY   N
Sbjct: 333 PFDEEDSEETEEDRDNVEDGWRYAGGN 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522029|gb|AFK49076.1| unknown [Lotus japonicus]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 152/209 (72%), Positives = 173/209 (82%), Gaps = 6/209 (2%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPP-ERITKTPKP 59
           MKTHSQENYHICPYPDCGKRYAHEYKLKNH+ASHHEKN ++E+P+Y TPP E+ TKT KP
Sbjct: 159 MKTHSQENYHICPYPDCGKRYAHEYKLKNHVASHHEKNPSLELPKYTTPPSEKQTKTTKP 218

Query: 60  PAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTNADNEMD 119
             G Y SASS+RPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS+ENA +A  NADNEMD
Sbjct: 219 SGGAYTSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSEENAVHALANADNEMD 278

Query: 120 EGSDQDAYAG-KRVNGKSQKQSRAKPNLKMPPAKVTQRKSSTPSP-ATLNVVRKQQWTPK 177
           E SDQDAY G KR NGKSQKQS+ KPNLK+PP+K+  RK S P+P A LNV++K  W  K
Sbjct: 279 EASDQDAYGGVKRSNGKSQKQSKPKPNLKLPPSKMA-RKGSAPTPSAPLNVIKK-PWPVK 336

Query: 178 EEVYEEEDSEETEEDRDNVEDGFRYGENN 206
           +E Y+E+  E  E+  DNVEDG+RY  NN
Sbjct: 337 QETYDEDSEETEEDR-DNVEDGWRYAGNN 364

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:1005716361	387	YY1 "Yin Yang 1" [Arabidopsis	0.921	0.516	0.546	1.6e-56
UNIPROTKB|E1C0K9	336	ZIC4 "Uncharacterized protein"	0.423	0.273	0.305	1.5e-10
UNIPROTKB|G3MXH4	200	ZIC5 "Uncharacterized protein"	0.400	0.435	0.32	3.3e-10
UNIPROTKB|F1M349	274	Zic5 "Protein Zic5" [Rattus no	0.400	0.317	0.32	4.3e-09
RGD|1310160	291	Zic5 "Zic family member 5" [Ra	0.400	0.298	0.32	5.8e-09
UNIPROTKB|E7EX64	340	ZNF76 "Zinc finger protein 76"	0.423	0.270	0.313	6.2e-09
RGD|1306239	568	Zfp523 "zinc finger protein 52	0.423	0.161	0.313	1.2e-08
UNIPROTKB|Q5R3B9	544	ZNF76 "Zinc finger protein 76"	0.423	0.169	0.313	1.5e-08
UNIPROTKB|F1RZ10	546	ZNF76 "Uncharacterized protein	0.423	0.168	0.313	1.5e-08
MGI|MGI:2687278	568	Zfp523 "zinc finger protein 52	0.423	0.161	0.313	1.6e-08

TAIR|locus:1005716361 YY1 "Yin Yang 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 118/216 (54%), Positives = 137/216 (63%)

Query:     1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
             MKTHSQENYHICPY  C KRYAHEYKLKNH+A++HEKN   E P+Y  P E++ +T K P
Sbjct:   159 MKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYHEKNGGGETPKYTPPAEKVLRTVKTP 218

Query:    61 AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSXXXXXXXXXXXXXX--- 117
             A V G  SS+RPYACPYEGCEKAYIHEYKLKLHLKREHPGH+                  
Sbjct:   219 ATVCGP-SSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHLQEENADTPTLNKHNGNDR 277

Query:   118 --MDEGSDQDAYAGKRVNGKSQ---KQSRAKPNLKMPPAKVTQRKSSTPSPATLNVVRKQ 172
               +D+GSDQD Y     NGK Q   +QSRAKPN++ PPAKV  +K ST SPA   + +K 
Sbjct:   278 NEIDDGSDQDVYRKHASNGKGQTHKQQSRAKPNMRTPPAKVG-KKGSTSSPAKARIAKKP 336

Query:   173 QWTPKXXXXXXXX-----XXXXXXDRDNVEDGFRYG 203
              W  K                   DRDNVEDG+R+G
Sbjct:   337 -WQAKETFEEVEREEEEDSEETEEDRDNVEDGWRFG 371

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0043565 "sequence-specific DNA binding" evidence=IDA

UNIPROTKB|E1C0K9 ZIC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 29/95 (30%), Positives = 46/95 (48%)

Query:     1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
             ++ H+ E    CP+P CGK +A    LK H  +H  +     V      P   +   K  
Sbjct:   194 IRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCVKEGCDRPFANSSDRKKH 253

Query:    61 AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 95
             + V+   +S++PY C   GC+K+Y H   L+ H+K
Sbjct:   254 SHVH---TSDKPYNCKVRGCDKSYTHPSSLRKHMK 285

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G3MXH4 ZIC5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 127 (49.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 32/100 (32%), Positives = 50/100 (50%)

Query:     1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHH-EKNAAVEVP----RYATPPERITK 55
             ++ H+ E    CP+P CGK +A    LK H  +H  EK    E      ++A   +R   
Sbjct:    19 IRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFDGCDRKFANSSDR--- 75

Query:    56 TPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 95
               K  + V+   +S++PY C   GC+K+Y H   L+ H+K
Sbjct:    76 --KKHSHVH---TSDKPYYCKVRGCDKSYTHPSSLRKHMK 110

GO:0030900 "forebrain development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1M349 Zic5 "Protein Zic5" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
 Identities = 32/100 (32%), Positives = 50/100 (50%)

Query:     1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHH-EKNAAVEVP----RYATPPERITK 55
             ++ H+ E    CP+P CGK +A    LK H  +H  EK    E      ++A   +R   
Sbjct:    93 IRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFDGCDRKFANSSDR--- 149

Query:    56 TPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 95
               K  + V+   +S++PY C   GC+K+Y H   L+ H+K
Sbjct:   150 --KKHSHVH---TSDKPYYCKIRGCDKSYTHPSSLRKHMK 184

GO:0001843 "neural tube closure" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

RGD|1310160 Zic5 "Zic family member 5" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
 Identities = 32/100 (32%), Positives = 50/100 (50%)

Query:     1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHH-EKNAAVEVP----RYATPPERITK 55
             ++ H+ E    CP+P CGK +A    LK H  +H  EK    E      ++A   +R   
Sbjct:   110 IRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFDGCDRKFANSSDR--- 166

Query:    56 TPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 95
               K  + V+   +S++PY C   GC+K+Y H   L+ H+K
Sbjct:   167 --KKHSHVH---TSDKPYYCKIRGCDKSYTHPSSLRKHMK 201

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA;ISO

GO:0030900 "forebrain development" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

UNIPROTKB|E7EX64 ZNF76 "Zinc finger protein 76" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 32/102 (31%), Positives = 51/102 (50%)

Query:     2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
             + H+ +  + C +P CGK +A  Y LK+H+ +H       E P Y  P E  +K  K   
Sbjct:   187 RAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTH-----TGEKP-YKCPEELCSKAFKTSG 240

Query:    62 GVYGSA---SSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
              +       + ERP+ CP+EGC +++      K+H+ R H G
Sbjct:   241 DLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHV-RTHTG 281

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1306239 Zfp523 "zinc finger protein 523" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 32/102 (31%), Positives = 51/102 (50%)

Query:     2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
             + H+ +  + C +P CGK +A  Y LK+H+ +H       E P Y  P E  +K  K   
Sbjct:   187 RAHTGDRSYRCDFPSCGKAFATGYGLKSHVRTH-----TGEKP-YKCPEELCSKAFKTSG 240

Query:    62 GVYGSA---SSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
              +       + ERP+ CP+EGC +++      K+H+ R H G
Sbjct:   241 DLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHV-RTHTG 281

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5R3B9 ZNF76 "Zinc finger protein 76" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 32/102 (31%), Positives = 51/102 (50%)

Query:     2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
             + H+ +  + C +P CGK +A  Y LK+H+ +H       E P Y  P E  +K  K   
Sbjct:   161 RAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTH-----TGEKP-YKCPEELCSKAFKTSG 214

Query:    62 GVYGSA---SSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
              +       + ERP+ CP+EGC +++      K+H+ R H G
Sbjct:   215 DLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHV-RTHTG 255

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RZ10 ZNF76 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 139 (54.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 32/102 (31%), Positives = 51/102 (50%)

Query:     2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
             + H+ +  + C +P CGK +A  Y LK+H+ +H       E P Y  P E  +K  K   
Sbjct:   163 RAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTH-----TGEKP-YKCPEELCSKAFKTSG 216

Query:    62 GVYGSA---SSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
              +       + ERP+ CP+EGC +++      K+H+ R H G
Sbjct:   217 DLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHV-RTHTG 257

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:2687278 Zfp523 "zinc finger protein 523" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 32/102 (31%), Positives = 51/102 (50%)

Query:     2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
             + H+ +  + C +P CGK +A  Y LK+H+ +H       E P Y  P E  +K  K   
Sbjct:   187 RAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTH-----TGEKP-YKCPEELCSKAFKTSG 240

Query:    62 GVYGSA---SSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
              +       + ERP+ CP+EGC +++      K+H+ R H G
Sbjct:   241 DLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHV-RTHTG 281

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0086000101 hypothetical protein (378 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
COG5189	423	COG5189, SFP1, Putative transcriptional repressor	0.001

>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 16/44 (36%), Positives = 20/44 (45%)

Query: 70  ERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENATTN 113
            +PY CP EGC K Y ++  LK H+   H      EN      N
Sbjct: 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMN 390

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.84
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.81
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.66
KOG3576	267	consensus Ovo and related transcription factors [T	99.63
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.61
KOG3576	267	consensus Ovo and related transcription factors [T	99.37
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.36
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.2
PHA00733	128	hypothetical protein	99.03
PHA02768	55	hypothetical protein; Provisional	98.99
KOG3608	467	consensus Zn finger proteins [General function pre	98.91
KOG3608	467	consensus Zn finger proteins [General function pre	98.78
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.75
PLN03086	567	PRLI-interacting factor K; Provisional	98.56
KOG3993	500	consensus Transcription factor (contains Zn finger	98.47
PHA00616	44	hypothetical protein	98.47
PLN03086	567	PRLI-interacting factor K; Provisional	98.43
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.3
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.29
PHA00732	79	hypothetical protein	98.27
PHA00733	128	hypothetical protein	98.24
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.15
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.94
PHA02768	55	hypothetical protein; Provisional	97.94
PHA00616	44	hypothetical protein	97.94
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.93
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.79
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.68
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.4
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.33
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.27
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.22
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	97.14
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.91
smart00355	26	ZnF_C2H2 zinc finger.	96.78
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.76
COG5048	467	FOG: Zn-finger [General function prediction only]	96.75
smart00355	26	ZnF_C2H2 zinc finger.	96.75
PHA00732	79	hypothetical protein	96.71
KOG3993	500	consensus Transcription factor (contains Zn finger	96.63
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.2
COG5048	467	FOG: Zn-finger [General function prediction only]	95.86
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.72
PRK04860	160	hypothetical protein; Provisional	95.36
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.33
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	94.9
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.58
COG5189	423	SFP1 Putative transcriptional repressor regulating	94.53
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	94.42
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.13
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.62
KOG1146	1406	consensus Homeobox protein [General function predi	93.6
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	93.21
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.96
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.5
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.47
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	91.36
KOG4124	442	consensus Putative transcriptional repressor regul	91.29
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	90.56
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	90.32
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	88.35
KOG4377	480	consensus Zn-finger protein [General function pred	88.35
COG5236	493	Uncharacterized conserved protein, contains RING Z	87.58
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	86.72
KOG1146	1406	consensus Homeobox protein [General function predi	86.48
KOG1834	952	consensus Calsyntenin [Extracellular structures]	85.42
KOG2893	341	consensus Zn finger protein [General function pred	84.37
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	83.31
PRK04860	160	hypothetical protein; Provisional	83.16
COG4049	65	Uncharacterized protein containing archaeal-type C	82.87

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.84  E-value=2.6e-22  Score=158.94  Aligned_cols=84  Identities=26%  Similarity=0.452  Sum_probs=44.0

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccCh
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHE   87 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~   87 (217)
                      +-+.|.  .|+|.|..-..|+.|+|+|+  -|++|     .+|+|.|.+...|+.|+|+|||||||.|..  |+|+|+-+
T Consensus       160 ka~~C~--~C~K~YvSmpALkMHirTH~--l~c~C-----~iCGKaFSRPWLLQGHiRTHTGEKPF~C~h--C~kAFADR  228 (279)
T KOG2462|consen  160 KAFSCK--YCGKVYVSMPALKMHIRTHT--LPCEC-----GICGKAFSRPWLLQGHIRTHTGEKPFSCPH--CGKAFADR  228 (279)
T ss_pred             ccccCC--CCCceeeehHHHhhHhhccC--CCccc-----ccccccccchHHhhcccccccCCCCccCCc--ccchhcch
Confidence            334552  35555555555555555554  33444     555555555555555555555555555555  55555555


Q ss_pred             HHHHHHHHhhCCCCCC
Q 027872           88 YKLKLHLKREHPGHMS  103 (217)
Q Consensus        88 ~~L~~H~~~~h~~~~~  103 (217)
                      +||+.||++ |.+.++
T Consensus       229 SNLRAHmQT-HS~~K~  243 (279)
T KOG2462|consen  229 SNLRAHMQT-HSDVKK  243 (279)
T ss_pred             HHHHHHHHh-hcCCcc
Confidence            555555555 444443

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.81  E-value=2e-20  Score=148.30  Aligned_cols=84  Identities=20%  Similarity=0.331  Sum_probs=79.6

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      |+|+  -|++|  ++|||+|.+...|+.|+|+|||+|||.|     ..|+|.|..+++|+.||++|++.|+|+|+.  |+
T Consensus       182 rTH~--l~c~C--~iCGKaFSRPWLLQGHiRTHTGEKPF~C-----~hC~kAFADRSNLRAHmQTHS~~K~~qC~~--C~  250 (279)
T KOG2462|consen  182 RTHT--LPCEC--GICGKAFSRPWLLQGHIRTHTGEKPFSC-----PHCGKAFADRSNLRAHMQTHSDVKKHQCPR--CG  250 (279)
T ss_pred             hccC--CCccc--ccccccccchHHhhcccccccCCCCccC-----CcccchhcchHHHHHHHHhhcCCccccCcc--hh
Confidence            5565  78999  5899999999999999999999999999     899999999999999999999999999998  99


Q ss_pred             ccccChHHHHHHHHh
Q 027872           82 KAYIHEYKLKLHLKR   96 (217)
Q Consensus        82 k~F~~~~~L~~H~~~   96 (217)
                      |+|++.+.|.+|...
T Consensus       251 KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  251 KSFALKSYLNKHSES  265 (279)
T ss_pred             hHHHHHHHHHHhhhh
Confidence            999999999999865

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.66  E-value=1e-17  Score=147.08  Aligned_cols=87  Identities=18%  Similarity=0.317  Sum_probs=80.5

Q ss_pred             CCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccc
Q 027872            5 SQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAY   84 (217)
Q Consensus         5 tgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F   84 (217)
                      +.+-+|.|  +.|.|+|...+.|.+|...|+|.+||+|     .+|.|.|+.+++|..|+|.|+|+|||.|..  |+|+|
T Consensus       890 te~gmyaC--DqCDK~FqKqSSLaRHKYEHsGqRPyqC-----~iCkKAFKHKHHLtEHkRLHSGEKPfQCdK--ClKRF  960 (1007)
T KOG3623|consen  890 TEDGMYAC--DQCDKAFQKQSSLARHKYEHSGQRPYQC-----IICKKAFKHKHHLTEHKRLHSGEKPFQCDK--CLKRF  960 (1007)
T ss_pred             CccccchH--HHHHHHHHhhHHHHHhhhhhcCCCCccc-----chhhHhhhhhhhhhhhhhhccCCCcchhhh--hhhhc
Confidence            34568999  6899999999999999999999999999     999999999999999999999999999998  99999


Q ss_pred             cChHHHHHHHHhhCCCCC
Q 027872           85 IHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        85 ~~~~~L~~H~~~~h~~~~  102 (217)
                      +++....+||.  |....
T Consensus       961 SHSGSYSQHMN--HRYSY  976 (1007)
T KOG3623|consen  961 SHSGSYSQHMN--HRYSY  976 (1007)
T ss_pred             ccccchHhhhc--cchhc
Confidence            99999999983  55443

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.63  E-value=3.9e-17  Score=124.05  Aligned_cols=88  Identities=24%  Similarity=0.420  Sum_probs=81.7

Q ss_pred             CCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccccccc
Q 027872            6 QENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYI   85 (217)
Q Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~   85 (217)
                      +.-.|.|.  +|+|.|....-|.+|++.|...|.|-|     ..|+|.|+....|++|+|+|+|.+||+|..  |+|+|+
T Consensus       114 d~d~ftCr--vCgK~F~lQRmlnrh~kch~~vkr~lc-----t~cgkgfndtfdlkrh~rthtgvrpykc~~--c~kaft  184 (267)
T KOG3576|consen  114 DQDSFTCR--VCGKKFGLQRMLNRHLKCHSDVKRHLC-----TFCGKGFNDTFDLKRHTRTHTGVRPYKCSL--CEKAFT  184 (267)
T ss_pred             CCCeeeee--hhhhhhhHHHHHHHHhhhccHHHHHHH-----hhccCcccchhhhhhhhccccCccccchhh--hhHHHH
Confidence            34569995  799999999999999999999999999     999999999999999999999999999988  999999


Q ss_pred             ChHHHHHHHHhhCCCCC
Q 027872           86 HEYKLKLHLKREHPGHM  102 (217)
Q Consensus        86 ~~~~L~~H~~~~h~~~~  102 (217)
                      ++..|..|++..|+...
T Consensus       185 qrcsleshl~kvhgv~~  201 (267)
T KOG3576|consen  185 QRCSLESHLKKVHGVQH  201 (267)
T ss_pred             hhccHHHHHHHHcCchH
Confidence            99999999998887644

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.61  E-value=6.6e-17  Score=144.03  Aligned_cols=49  Identities=24%  Similarity=0.470  Sum_probs=42.7

Q ss_pred             CCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChHHHHHHHHhh
Q 027872           47 ATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        47 ~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      |-+|.+.+.-.+.|+.|+|+|+|||||+|++  ||++|+.+.+|+.||-+|
T Consensus       608 CiiC~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vH  656 (958)
T KOG1074|consen  608 CIICLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVH  656 (958)
T ss_pred             eeeeeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhccccc
Confidence            3556666667778888999999999999999  999999999999999774

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.37  E-value=5.5e-14  Score=107.01  Aligned_cols=92  Identities=24%  Similarity=0.388  Sum_probs=81.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccc-cCC----------C
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYG-SAS----------S   69 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~-~H~----------~   69 (217)
                      |+-|+.-|.|-|+|  |||.|.....|++|+|+|||.+||+|     .+|+|.|.++-.|..|++ +|.          .
T Consensus       137 ~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc-----~~c~kaftqrcsleshl~kvhgv~~~yaykerr  209 (267)
T KOG3576|consen  137 LKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKC-----SLCEKAFTQRCSLESHLKKVHGVQHQYAYKERR  209 (267)
T ss_pred             hhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccch-----hhhhHHHHhhccHHHHHHHHcCchHHHHHHHhh
Confidence            45688889999975  99999999999999999999999999     999999999999999965 442          2


Q ss_pred             CCCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      .|-|+|..  ||.+-.+...+..|++.||+..
T Consensus       210 ~kl~vced--cg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  210 AKLYVCED--CGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             hheeeecc--cCCCCCChhHHHHHHHhcCCCC
Confidence            46799977  9999999999999999988764

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.36  E-value=2.2e-13  Score=120.28  Aligned_cols=80  Identities=21%  Similarity=0.338  Sum_probs=72.1

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCC-------------CCcccCCcCCCCCCCcccCCCCcccccccCCCCCCee
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEK-------------NAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYA   74 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~-------------kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~   74 (217)
                      -.|.|  ..|.++|..+..|.+|+.+|..-             +.|+|     .-|+|.|+-+++|+.|+|||+|+|||.
T Consensus       239 ~nfsC--~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKC-----tECgKAFKfKHHLKEHlRIHSGEKPfe  311 (1007)
T KOG3623|consen  239 PNFSC--MLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKC-----TECGKAFKFKHHLKEHLRIHSGEKPFE  311 (1007)
T ss_pred             CCCcc--hhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccc-----cccchhhhhHHHHHhhheeecCCCCcC
Confidence            34889  58999999999999999999642             44666     999999999999999999999999999


Q ss_pred             cCcccccccccChHHHHHHHHh
Q 027872           75 CPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        75 C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      |+.  |+|+|+++..+..||-.
T Consensus       312 Cpn--CkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  312 CPN--CKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             Ccc--cccccccCCcccccccc
Confidence            998  99999999999999853

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.20  E-value=3.8e-12  Score=114.11  Aligned_cols=88  Identities=17%  Similarity=0.274  Sum_probs=78.4

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCC----CCeecC---ccccc
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSE----RPYACP---YEGCE   81 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~e----kp~~C~---~~~C~   81 (217)
                      |-+|  .+|-+....++.|+-|.|+|+|+|||+|     .+|++.|.++.+|+.||-+|-..    -+|.|+   +  |.
T Consensus       605 PNqC--iiC~rVlSC~saLqmHyrtHtGERPFkC-----KiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i--c~  675 (958)
T KOG1074|consen  605 PNQC--IICLRVLSCPSALQMHYRTHTGERPFKC-----KICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI--CQ  675 (958)
T ss_pred             ccce--eeeeecccchhhhhhhhhcccCcCcccc-----ccccchhccccchhhcccccccCccccccccCCchhh--hc
Confidence            6789  5899999999999999999999999999     99999999999999999999654    357899   9  99


Q ss_pred             ccccChHHHHHHHHhhCCCCCCcc
Q 027872           82 KAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +.|...-.|.+|+++|-++..+..
T Consensus       676 ~kftn~V~lpQhIriH~~~~~s~g  699 (958)
T KOG1074|consen  676 KKFTNAVTLPQHIRIHLGGQISNG  699 (958)
T ss_pred             ccccccccccceEEeecCCCCCCC
Confidence            999999999999998554555443

>PHA00733 hypothetical protein

Probab=99.03  E-value=6.9e-11  Score=86.06  Aligned_cols=82  Identities=12%  Similarity=0.058  Sum_probs=69.3

Q ss_pred             CCceecCCCCCCccccChhhHHHH--HH---hhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNH--IA---SHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H--~~---~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      .+++.|  .+|.+.|.....|..|  ++   .+.+.+||.|     ..|++.|.+...|..|++.|  ..+|.|..  |+
T Consensus        38 ~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C-----~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~--Cg  106 (128)
T PHA00733         38 QKRLIR--AVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVC-----PLCLMPFSSSVSLKQHIRYT--EHSKVCPV--CG  106 (128)
T ss_pred             hhhHHH--HHHhhhccChhhhcchHHHHhhcccCCCCCccC-----CCCCCcCCCHHHHHHHHhcC--CcCccCCC--CC
Confidence            567899  5799999988777766  22   2335789999     99999999999999999987  46899999  99


Q ss_pred             ccccChHHHHHHHHhhCC
Q 027872           82 KAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~h~   99 (217)
                      +.|.....|..|+...|.
T Consensus       107 K~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        107 KEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CccCCHHHHHHHHHHhcC
Confidence            999999999999988775

>PHA02768 hypothetical protein; Provisional

Probab=98.99  E-value=1.7e-10  Score=70.25  Aligned_cols=42  Identities=19%  Similarity=0.471  Sum_probs=35.6

Q ss_pred             eecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChHH
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYK   89 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~   89 (217)
                      |.|  +.|||.|.+.++|..|+++|+                                   +||+|..  |++.|.+.+.
T Consensus         6 y~C--~~CGK~Fs~~~~L~~H~r~H~-----------------------------------k~~kc~~--C~k~f~~~s~   46 (55)
T PHA02768          6 YEC--PICGEIYIKRKSMITHLRKHN-----------------------------------TNLKLSN--CKRISLRTGE   46 (55)
T ss_pred             cCc--chhCCeeccHHHHHHHHHhcC-----------------------------------CcccCCc--ccceecccce
Confidence            789  689999999999999999994                                   5777766  8888887766


Q ss_pred             H
Q 027872           90 L   90 (217)
Q Consensus        90 L   90 (217)
                      |
T Consensus        47 l   47 (55)
T PHA02768         47 Y   47 (55)
T ss_pred             e
Confidence            5

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.91  E-value=1.3e-10  Score=95.49  Aligned_cols=94  Identities=21%  Similarity=0.403  Sum_probs=69.7

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhc--CCCCcccC---------------------CcCCCCCCCcccCCC
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHH--EKNAAVEV---------------------PRYATPPERITKTPK   58 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~--~~kp~~c~---------------------~~~~~~~~~~~~~~~   58 (217)
                      |+|+++|.-.|  +.||..|.++..|..|+|.-+  ...+|.|.                     ...|.+|.......+
T Consensus       200 r~Hs~eKvvAC--p~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~s  277 (467)
T KOG3608|consen  200 RTHSNEKVVAC--PHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSAS  277 (467)
T ss_pred             HhcCCCeEEec--chHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChH
Confidence            67777887778  468777777777777766544  35566652                     334466666666777


Q ss_pred             Ccccccc-cCCCCCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           59 PPAGVYG-SASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        59 ~l~~H~~-~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      .|.+|++ .|+..|||+|.-  |.+.|.+-+.|.+|..+ |..
T Consensus       278 sL~~H~r~rHs~dkpfKCd~--Cd~~c~~esdL~kH~~~-HS~  317 (467)
T KOG3608|consen  278 SLTTHIRYRHSKDKPFKCDE--CDTRCVRESDLAKHVQV-HSK  317 (467)
T ss_pred             HHHHHHHhhhccCCCccccc--hhhhhccHHHHHHHHHh-ccc
Confidence            7788854 688899999988  99999999999999986 543

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.78  E-value=3.1e-09  Score=87.45  Aligned_cols=98  Identities=19%  Similarity=0.314  Sum_probs=68.5

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCC-C--CCCeecCccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSAS-S--ERPYACPYEG   79 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~-~--ekp~~C~~~~   79 (217)
                      .|+..|||+|  +.|.+.|.+.+.|.+|..+|+ +-.|.|.+.   .|.-.|++...+.+|++-|. |  .-+|.|..  
T Consensus       286 rHs~dkpfKC--d~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~---~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~--  357 (467)
T KOG3608|consen  286 RHSKDKPFKC--DECDTRCVRESDLAKHVQVHS-KTVYQCEHP---DCHYSVRTYTQMRRHFLEVHEGNNPILYACHC--  357 (467)
T ss_pred             hhccCCCccc--cchhhhhccHHHHHHHHHhcc-ccceecCCC---CCcHHHHHHHHHHHHHHHhccCCCCCceeeec--
Confidence            4677777887  577777777777877777777 556666332   24445566666777766443 4  34688888  


Q ss_pred             ccccccChHHHHHHHHhhCCCCCCccccc
Q 027872           80 CEKAYIHEYKLKLHLKREHPGHMSDENAE  108 (217)
Q Consensus        80 C~k~F~~~~~L~~H~~~~h~~~~~~~~~~  108 (217)
                      |++.|++-.+|.+|++..|.-..|..-..
T Consensus       358 Cdr~ft~G~~L~~HL~kkH~f~~PsGh~R  386 (467)
T KOG3608|consen  358 CDRFFTSGKSLSAHLMKKHGFRLPSGHKR  386 (467)
T ss_pred             chhhhccchhHHHHHHHhhcccCCCCCCc
Confidence            89999888889899888787777655433

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.75  E-value=7e-10  Score=57.87  Aligned_cols=24  Identities=33%  Similarity=0.909  Sum_probs=17.9

Q ss_pred             ccccccCCCCCCeecCcccccccccC
Q 027872           61 AGVYGSASSERPYACPYEGCEKAYIH   86 (217)
Q Consensus        61 ~~H~~~H~~ekp~~C~~~~C~k~F~~   86 (217)
                      .+|+++|+++|||.|++  |+++|.+
T Consensus         3 ~~H~~~H~~~k~~~C~~--C~k~F~~   26 (26)
T PF13465_consen    3 RRHMRTHTGEKPYKCPY--CGKSFSN   26 (26)
T ss_dssp             HHHHHHHSSSSSEEESS--SSEEESS
T ss_pred             HHHhhhcCCCCCCCCCC--CcCeeCc
Confidence            34444447889999988  9999974

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.56  E-value=7e-08  Score=85.60  Aligned_cols=79  Identities=14%  Similarity=0.248  Sum_probs=65.7

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccccc
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKA   83 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~   83 (217)
                      ...++.+.|.  .|++.|. ...|..|+++|+  +|+.|     . |++.+ .+..|..|+.+|...+|+.|.+  |++.
T Consensus       448 ~el~~H~~C~--~Cgk~f~-~s~LekH~~~~H--kpv~C-----p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f--C~~~  513 (567)
T PLN03086        448 EEAKNHVHCE--KCGQAFQ-QGEMEKHMKVFH--EPLQC-----P-CGVVL-EKEQMVQHQASTCPLRLITCRF--CGDM  513 (567)
T ss_pred             cccccCccCC--CCCCccc-hHHHHHHHHhcC--CCccC-----C-CCCCc-chhHHHhhhhccCCCCceeCCC--CCCc
Confidence            3456778994  6999996 678999999985  88999     4 87644 6689999999999999999999  9999


Q ss_pred             cc----------ChHHHHHHHHh
Q 027872           84 YI----------HEYKLKLHLKR   96 (217)
Q Consensus        84 F~----------~~~~L~~H~~~   96 (217)
                      |.          +.+.|..|..+
T Consensus       514 v~~g~~~~d~~d~~s~Lt~HE~~  536 (567)
T PLN03086        514 VQAGGSAMDVRDRLRGMSEHESI  536 (567)
T ss_pred             cccCccccchhhhhhhHHHHHHh
Confidence            95          24589999876

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.47  E-value=2.5e-07  Score=77.96  Aligned_cols=90  Identities=19%  Similarity=0.300  Sum_probs=55.4

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCCccc-CCcCCCCCCCcccCCCCcccccc--cCCCCCCeecCccccccccc
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE-VPRYATPPERITKTPKPPAGVYG--SASSERPYACPYEGCEKAYI   85 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c-~~~~~~~~~~~~~~~~~l~~H~~--~H~~ekp~~C~~~~C~k~F~   85 (217)
                      -|+|  ++|+|.|+-..||..|.|+|.....-.. ......   +...+....+.-.+  .-..+.-|.|.+  |+|.|.
T Consensus       295 EYrC--PEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k---~~~~~rae~~ea~rsg~dss~gi~~C~~--C~KkFr  367 (500)
T KOG3993|consen  295 EYRC--PECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPK---QAVETRAEVQEAERSGDDSSSGIFSCHT--CGKKFR  367 (500)
T ss_pred             eecC--CcccccccCchhhhhhhcccCCchhhhhcCCCChh---hhhhhhhhhhhccccCCcccCceeecHH--hhhhhH
Confidence            3899  6999999999999999999954322210 000000   00000000000000  001234799999  999999


Q ss_pred             ChHHHHHHHHhhCCCCCCcc
Q 027872           86 HEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        86 ~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +...|++|+.+||.......
T Consensus       368 RqAYLrKHqlthq~~~~~k~  387 (500)
T KOG3993|consen  368 RQAYLRKHQLTHQRAPLAKE  387 (500)
T ss_pred             HHHHHHHhHHhhhccccchh
Confidence            99999999999887776654

>PHA00616 hypothetical protein

Probab=98.47  E-value=6.5e-08  Score=56.16  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=29.4

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      ||+|  +.||+.|..++.|..|++.|++++|+.|
T Consensus         1 pYqC--~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          1 MYQC--LRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CCcc--chhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            7999  6899999999999999999988888766

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.43  E-value=1.4e-07  Score=83.73  Aligned_cols=79  Identities=15%  Similarity=0.244  Sum_probs=65.7

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccC----------CCCcccccccCCCCCCeecCc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKT----------PKPPAGVYGSASSERPYACPY   77 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~----------~~~l~~H~~~H~~ekp~~C~~   77 (217)
                      +||.|  + ||+.| .+..|..|+.+|.+.+|+.|     .+|++.|..          ...|..|..++ |.+++.|..
T Consensus       477 kpv~C--p-Cg~~~-~R~~L~~H~~thCp~Kpi~C-----~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~  546 (567)
T PLN03086        477 EPLQC--P-CGVVL-EKEQMVQHQASTCPLRLITC-----RFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDS  546 (567)
T ss_pred             CCccC--C-CCCCc-chhHHHhhhhccCCCCceeC-----CCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccc
Confidence            89999  6 99866 56899999999999999999     668887742          34688898886 999999988


Q ss_pred             ccccccccChHHHHHHHHhhCC
Q 027872           78 EGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        78 ~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                        ||+.|..+ .|..|+...|.
T Consensus       547 --Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        547 --CGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             --cCCeeeeh-hHHHHHHHhhc
Confidence              99998865 67788876664

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.30  E-value=3.6e-07  Score=74.44  Aligned_cols=72  Identities=28%  Similarity=0.536  Sum_probs=50.5

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhc-CCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccccccc
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHH-EKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYI   85 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~-~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~   85 (217)
                      +|||+|+.+.|.|.|+....|+-|+..-+ ..+-..-   ....-...|            -...|||.|.+  |+|+|.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~---p~p~~~~~F------------~~~~KPYrCev--C~KRYK  409 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEN---PSPEKMNIF------------SAKDKPYRCEV--CDKRYK  409 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCC---CCccccccc------------cccCCceeccc--cchhhc
Confidence            59999999999999999999999976321 1111000   001111112            24679999999  999999


Q ss_pred             ChHHHHHHHH
Q 027872           86 HEYKLKLHLK   95 (217)
Q Consensus        86 ~~~~L~~H~~   95 (217)
                      ..-.|+-|++
T Consensus       410 NlNGLKYHr~  419 (423)
T COG5189         410 NLNGLKYHRK  419 (423)
T ss_pred             cCccceeccc
Confidence            9999998863

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.29  E-value=4.4e-07  Score=47.16  Aligned_cols=25  Identities=12%  Similarity=0.127  Sum_probs=16.9

Q ss_pred             hHHHHHHhhcCCCCcccCCcCCCCCCCccc
Q 027872           26 KLKNHIASHHEKNAAVEVPRYATPPERITK   55 (217)
Q Consensus        26 ~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~   55 (217)
                      +|.+|+++|++++||.|     ..|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C-----~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKC-----PYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEE-----SSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCC-----CCCcCeeC
Confidence            46677777777777777     66666654

...

>PHA00732 hypothetical protein

Probab=98.27  E-value=5.4e-07  Score=59.87  Aligned_cols=24  Identities=33%  Similarity=0.634  Sum_probs=21.4

Q ss_pred             ceecCCCCCCccccChhhHHHHHHh-h
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIAS-H   34 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~-H   34 (217)
                      ||.|  +.|++.|.+...|+.|++. |
T Consensus         1 py~C--~~Cgk~F~s~s~Lk~H~r~~H   25 (79)
T PHA00732          1 MFKC--PICGFTTVTLFALKQHARRNH   25 (79)
T ss_pred             CccC--CCCCCccCCHHHHHHHhhccc
Confidence            6899  5899999999999999985 5

>PHA00733 hypothetical protein

Probab=98.24  E-value=4e-07  Score=66.30  Aligned_cols=56  Identities=14%  Similarity=0.180  Sum_probs=48.0

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCC
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSAS   68 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~   68 (217)
                      +.+.+||.|  +.|++.|.+...|..|++.|  ..+|.|     ..|++.|.....|.+|+....
T Consensus        68 ~~~~kPy~C--~~Cgk~Fss~s~L~~H~r~h--~~~~~C-----~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         68 SKAVSPYVC--PLCLMPFSSSVSLKQHIRYT--EHSKVC-----PVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             cCCCCCccC--CCCCCcCCCHHHHHHHHhcC--CcCccC-----CCCCCccCCHHHHHHHHHHhc
Confidence            445899999  58999999999999999987  357888     999999999999998876543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.15  E-value=4.4e-06  Score=51.44  Aligned_cols=53  Identities=34%  Similarity=0.720  Sum_probs=39.8

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChH
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEY   88 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~   88 (217)
                      .|.|+|  |++.|. ...|..|+...+.                               ...+.+.|++  |...+.  .
T Consensus         2 ~f~CP~--C~~~~~-~~~L~~H~~~~H~-------------------------------~~~~~v~CPi--C~~~~~--~   43 (54)
T PF05605_consen    2 SFTCPY--CGKGFS-ESSLVEHCEDEHR-------------------------------SESKNVVCPI--CSSRVT--D   43 (54)
T ss_pred             CcCCCC--CCCccC-HHHHHHHHHhHCc-------------------------------CCCCCccCCC--chhhhh--h
Confidence            489965  999555 6789999776531                               2346799999  998765  4


Q ss_pred             HHHHHHHhhCC
Q 027872           89 KLKLHLKREHP   99 (217)
Q Consensus        89 ~L~~H~~~~h~   99 (217)
                      +|.+|+..+|.
T Consensus        44 ~l~~Hl~~~H~   54 (54)
T PF05605_consen   44 NLIRHLNSQHR   54 (54)
T ss_pred             HHHHHHHHhcC
Confidence            99999998773

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.94  E-value=6.9e-06  Score=41.20  Aligned_cols=23  Identities=39%  Similarity=0.860  Sum_probs=21.2

Q ss_pred             eecCCCCCCccccChhhHHHHHHhh
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      |+|  +.|++.|.+...|..|++.|
T Consensus         1 y~C--~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKC--PICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEE--TTTTEEESSHHHHHHHHHHH
T ss_pred             CCC--CCCCCccCCHHHHHHHHhHC
Confidence            789  58999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA02768 hypothetical protein; Provisional

Probab=97.94  E-value=8.5e-06  Score=49.73  Aligned_cols=25  Identities=32%  Similarity=0.838  Sum_probs=23.0

Q ss_pred             CeecCcccccccccChHHHHHHHHhhC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      -|.|+.  ||+.|++.++|..||++|+
T Consensus         5 ~y~C~~--CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          5 GYECPI--CGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             ccCcch--hCCeeccHHHHHHHHHhcC
Confidence            379998  9999999999999999966

>PHA00616 hypothetical protein

Probab=97.94  E-value=4.4e-06  Score=48.53  Aligned_cols=27  Identities=22%  Similarity=0.397  Sum_probs=24.5

Q ss_pred             CeecCcccccccccChHHHHHHHHhhCCC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      ||+|..  ||+.|.+.+.|.+|+++||+.
T Consensus         1 pYqC~~--CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          1 MYQCLR--CGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CCccch--hhHHHhhHHHHHHHHHHhcCC
Confidence            789988  999999999999999986655

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.93  E-value=8.2e-06  Score=40.93  Aligned_cols=22  Identities=41%  Similarity=0.987  Sum_probs=20.9

Q ss_pred             eecCcccccccccChHHHHHHHHh
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      |.|+.  |++.|.++..|.+|+++
T Consensus         1 y~C~~--C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPI--CGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETT--TTEEESSHHHHHHHHHH
T ss_pred             CCCCC--CCCccCCHHHHHHHHhH
Confidence            78998  99999999999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.79  E-value=2.3e-05  Score=39.38  Aligned_cols=24  Identities=29%  Similarity=0.890  Sum_probs=20.6

Q ss_pred             eecCcccccccccChHHHHHHHHhhC
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      |.|++  |++.|.....|..|++++|
T Consensus         1 ~~C~~--C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPI--CGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SS--TS-EESSHHHHHHHHHHHS
T ss_pred             CCCcC--CCCcCCcHHHHHHHHHhhC
Confidence            78999  9999999999999999876

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.68  E-value=2.8e-05  Score=40.56  Aligned_cols=26  Identities=23%  Similarity=0.553  Sum_probs=23.6

Q ss_pred             CeecCcccccccccChHHHHHHHHhhCC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      ||.|..  |++.|.....|..|++.|+.
T Consensus         1 ~~~C~~--C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDE--CGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETT--TTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCc--cCCccCChhHHHHHhHHhcC
Confidence            689998  99999999999999988654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.40  E-value=0.00016  Score=36.12  Aligned_cols=23  Identities=35%  Similarity=0.898  Sum_probs=19.3

Q ss_pred             eecCCCCCCccccChhhHHHHHHhh
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      |.|  +.|++.|.+...|+.|+++|
T Consensus         1 ~~C--~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQC--PICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE---SSTS-EESSHHHHHHHHHHH
T ss_pred             CCC--cCCCCcCCcHHHHHHHHHhh
Confidence            789  57999999999999999987

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.33  E-value=0.00013  Score=37.95  Aligned_cols=25  Identities=32%  Similarity=0.632  Sum_probs=23.0

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhc
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      ||.|  ..|++.|.....|..|++.|.
T Consensus         1 ~~~C--~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFEC--DECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEE--TTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCC--CccCCccCChhHHHHHhHHhc
Confidence            6999  589999999999999999884

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.27  E-value=0.00022  Score=49.08  Aligned_cols=73  Identities=18%  Similarity=0.440  Sum_probs=21.8

Q ss_pred             ecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChHHH
Q 027872           11 ICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKL   90 (217)
Q Consensus        11 ~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L   90 (217)
                      .|.  .|+..|.....|..|+...++...-.         ...+.....+..+.+. .-...+.|.+  |++.|.....|
T Consensus         1 ~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~---------~~~l~~~~~~~~~~~~-~~~~~~~C~~--C~~~f~s~~~l   66 (100)
T PF12756_consen    1 QCL--FCDESFSSVDDLLQHMKKKHGFDIPD---------QKYLVDPNRLLNYLRK-KVKESFRCPY--CNKTFRSREAL   66 (100)
T ss_dssp             ------------------------------------------------------------SSEEBSS--SS-EESSHHHH
T ss_pred             Ccc--cccccccccccccccccccccccccc---------cccccccccccccccc-ccCCCCCCCc--cCCCCcCHHHH
Confidence            484  69999999999999987555421110         0011111111112111 1123799999  99999999999


Q ss_pred             HHHHHhh
Q 027872           91 KLHLKRE   97 (217)
Q Consensus        91 ~~H~~~~   97 (217)
                      ..||+.+
T Consensus        67 ~~Hm~~~   73 (100)
T PF12756_consen   67 QEHMRSK   73 (100)
T ss_dssp             HHHHHHT
T ss_pred             HHHHcCc
Confidence            9999864

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.22  E-value=0.00042  Score=41.27  Aligned_cols=33  Identities=27%  Similarity=0.519  Sum_probs=23.3

Q ss_pred             CCCCceecCCCCCCccccChhhHHHHHHhhcCCCC
Q 027872            5 SQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNA   39 (217)
Q Consensus         5 tgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp   39 (217)
                      ..+.|..|  |+|+..+.+..+|++|+..+++.||
T Consensus        20 ~S~~PatC--P~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATC--PICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE---TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCC--CcchhhccchhhHHHHHHHHhcccC
Confidence            34679999  6999999999999999988876665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=97.14  E-value=0.00091  Score=53.45  Aligned_cols=26  Identities=19%  Similarity=0.483  Sum_probs=16.4

Q ss_pred             CCCCeecCcccccccccChHHHHHHHHh
Q 027872           69 SERPYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      ..+|+.|+.  ||.-......|..-.|+
T Consensus       206 k~k~~PCPK--Cg~et~eTkdLSmStR~  231 (314)
T PF06524_consen  206 KGKPIPCPK--CGYETQETKDLSMSTRS  231 (314)
T ss_pred             cCCCCCCCC--CCCcccccccceeeeec
Confidence            346777877  87766666666554444

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.91  E-value=0.0012  Score=39.31  Aligned_cols=31  Identities=32%  Similarity=0.585  Sum_probs=22.7

Q ss_pred             CCCCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           68 SSERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        68 ~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      ..++|-.|++  |+..+.+..+|++|+.++|..
T Consensus        20 ~S~~PatCP~--C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   20 QSEQPATCPI--CGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             TTS--EE-TT--T--EESSHHHHHHHHHHHTTT
T ss_pred             ccCCCCCCCc--chhhccchhhHHHHHHHHhcc
Confidence            3578999999  999999999999999987754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.78  E-value=0.0014  Score=33.10  Aligned_cols=22  Identities=36%  Similarity=0.833  Sum_probs=20.2

Q ss_pred             eecCcccccccccChHHHHHHHHh
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      |.|..  |+++|.....|..|++.
T Consensus         1 ~~C~~--C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPE--CGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCC--CcchhCCHHHHHHHHHH
Confidence            57988  99999999999999985

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.76  E-value=0.0012  Score=33.26  Aligned_cols=24  Identities=50%  Similarity=0.948  Sum_probs=19.5

Q ss_pred             eecCcccccccccChHHHHHHHHhhCC
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      |+|+.  |..... ...|.+|++++|+
T Consensus         1 y~C~~--C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPH--CSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SS--SS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCC--CCCcCC-HHHHHHHHHhhCc
Confidence            78988  999888 8899999999874

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.75  E-value=0.00078  Score=58.04  Aligned_cols=95  Identities=31%  Similarity=0.391  Sum_probs=69.3

Q ss_pred             ccCCC--CceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCC--------------------------------C
Q 027872            3 THSQE--NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYA--------------------------------T   48 (217)
Q Consensus         3 ~Htge--kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~--------------------------------~   48 (217)
                      .|+++  +|+.|+|..|++.|.+...|..|..+|++.+++.+....+                                .
T Consensus       313 ~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (467)
T COG5048         313 NHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSN  392 (467)
T ss_pred             ccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCccchhhccCccCCcccccccc
Confidence            68898  9999954469999999999999999999888775421111                                2


Q ss_pred             CCCCcccCCCCcccccccCCCCCCeecCcccccccccChHHHHHHHHhh
Q 027872           49 PPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        49 ~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      .|...+.....+..|...|...+++.|...+|.+.|.+...|..|++.+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (467)
T COG5048         393 SCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIH  441 (467)
T ss_pred             chhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccc
Confidence            2334455566666677777777766665556888999888888888763

>smart00355 ZnF_C2H2 zinc finger

Probab=96.75  E-value=0.0012  Score=33.34  Aligned_cols=24  Identities=38%  Similarity=0.869  Sum_probs=21.3

Q ss_pred             eecCCCCCCccccChhhHHHHHHhhc
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |.|  +.|++.|.....|..|++.|.
T Consensus         1 ~~C--~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRC--PECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCC--CCCcchhCCHHHHHHHHHHhc
Confidence            578  579999999999999999874

>PHA00732 hypothetical protein

Probab=96.71  E-value=0.0011  Score=44.05  Aligned_cols=45  Identities=20%  Similarity=0.141  Sum_probs=36.7

Q ss_pred             CcccCCcCCCCCCCcccCCCCccccccc-CCCCCCeecCcccccccccChHHHHHHHHh
Q 027872           39 AAVEVPRYATPPERITKTPKPPAGVYGS-ASSERPYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        39 p~~c~~~~~~~~~~~~~~~~~l~~H~~~-H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      ||.|     ..|++.|.+...|..|++. |.   ++.|+.  |+++|.   .|..|+++
T Consensus         1 py~C-----~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~--CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKC-----PICGFTTVTLFALKQHARRNHT---LTKCPV--CNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccC-----CCCCCccCCHHHHHHHhhcccC---CCccCC--CCCEeC---Chhhhhcc
Confidence            4566     8899999999999999884 64   589988  999998   58888754

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=96.63  E-value=0.0015  Score=55.78  Aligned_cols=92  Identities=17%  Similarity=0.421  Sum_probs=65.0

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCC---C---C--cc----cC-----------------------------CcC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEK---N---A--AV----EV-----------------------------PRY   46 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~---k---p--~~----c~-----------------------------~~~   46 (217)
                      -.|.|.  +|+|.|.+...|+.|+.+|...   +   +  +.    -.                             ...
T Consensus       355 gi~~C~--~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~  432 (500)
T KOG3993|consen  355 GIFSCH--TCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELEL  432 (500)
T ss_pred             ceeecH--HhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccC
Confidence            379994  7999999999999999988642   1   1  10    00                             111


Q ss_pred             CCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           47 ATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        47 ~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      +.+++-.+.++...-.+.+.-..+.-|.|.+  |--+|..+.+|.+|+...|..+..
T Consensus       433 pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky--~~atfyss~~ltrhin~~Hpse~r  487 (500)
T KOG3993|consen  433 PPYDGSPPSSSGSSGGYGRLGIAEQGFTCKY--CPATFYSSPGLTRHINKCHPSELR  487 (500)
T ss_pred             CCCCCCCcccCCCCCccccccchhhcccccc--chHhhhcCcchHhHhhhcChHHhh
Confidence            2334444455555555665556677799999  999999999999999888876553

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.20  E-value=0.0038  Score=31.59  Aligned_cols=22  Identities=32%  Similarity=0.798  Sum_probs=20.3

Q ss_pred             eecCcccccccccChHHHHHHHHh
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      |.|.+  |++.|.....|..|++.
T Consensus         1 ~~C~~--C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDI--CNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETT--TTEEESSHHHHHHHHTT
T ss_pred             CCCCC--CCCCcCCHHHHHHHHCc
Confidence            67998  99999999999999975

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.86  E-value=0.0057  Score=52.66  Aligned_cols=75  Identities=8%  Similarity=-0.016  Sum_probs=50.2

Q ss_pred             CceecCCCCCCccccChhhHHHHHH--hhcCC--CCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccccc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIA--SHHEK--NAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKA   83 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~--~H~~~--kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~   83 (217)
                      .++.|  ..|...|.....|.+|.+  .|+++  +|+.|.+.   .|.+.|.+...+.+|..+|++.+++.|....|.+.
T Consensus       288 ~~~~~--~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (467)
T COG5048         288 LPIKS--KQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYS---LCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSK  362 (467)
T ss_pred             cCCCC--ccccCCccccccccccccccccccccCCceeeecc---CCCccccccccccCCcccccCCCccccccccCccc
Confidence            35666  357777777777777777  67777  77777333   67777777777777777777777777665445555


Q ss_pred             ccCh
Q 027872           84 YIHE   87 (217)
Q Consensus        84 F~~~   87 (217)
                      +...
T Consensus       363 ~~~~  366 (467)
T COG5048         363 FSPL  366 (467)
T ss_pred             cccc
Confidence            5443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.72  E-value=0.008  Score=30.34  Aligned_cols=23  Identities=30%  Similarity=0.693  Sum_probs=20.8

Q ss_pred             eecCCCCCCccccChhhHHHHHHhh
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      |.|  .+|.+.|.....|+.|++.+
T Consensus         1 ~~C--~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYC--DICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEE--TTTTEEESSHHHHHHHHTTH
T ss_pred             CCC--CCCCCCcCCHHHHHHHHCcC
Confidence            679  58999999999999999876

>PRK04860 hypothetical protein; Provisional

Probab=95.36  E-value=0.0042  Score=46.95  Aligned_cols=33  Identities=12%  Similarity=0.223  Sum_probs=24.8

Q ss_pred             CCCcccCCCCcccccccCCCCCCeecCcccccccccCh
Q 027872           50 PERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHE   87 (217)
Q Consensus        50 ~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~   87 (217)
                      |+.   ....+.+|.++|+++++|.|..  |++.|...
T Consensus       124 C~~---~~~~~rrH~ri~~g~~~YrC~~--C~~~l~~~  156 (160)
T PRK04860        124 CQE---HQLTVRRHNRVVRGEAVYRCRR--CGETLVFK  156 (160)
T ss_pred             CCC---eeCHHHHHHHHhcCCccEECCC--CCceeEEe
Confidence            555   4455677888888889999987  98887643

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.33  E-value=0.02  Score=28.63  Aligned_cols=23  Identities=35%  Similarity=0.751  Sum_probs=18.2

Q ss_pred             eecCCCCCCccccChhhHHHHHHhhc
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |+|  +.|..... ...|..|++.|.
T Consensus         1 y~C--~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKC--PHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE---SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCC--CCCCCcCC-HHHHHHHHHhhC
Confidence            789  47999998 999999999874

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=94.90  E-value=0.081  Score=42.60  Aligned_cols=17  Identities=18%  Similarity=0.452  Sum_probs=9.1

Q ss_pred             CCeecCcccccccccChHHH
Q 027872           71 RPYACPYEGCEKAYIHEYKL   90 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L   90 (217)
                      -.|+|..  |++ +.+.+-|
T Consensus       170 E~~KC~S--CNr-lGq~sCL  186 (314)
T PF06524_consen  170 ETFKCQS--CNR-LGQYSCL  186 (314)
T ss_pred             ccccccc--ccc-ccchhhh
Confidence            4567765  665 3444444

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.58  E-value=0.0091  Score=30.90  Aligned_cols=22  Identities=36%  Similarity=0.771  Sum_probs=19.8

Q ss_pred             eecCcccccccccChHHHHHHHHh
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      |.|..  |++.|.....|..|+++
T Consensus         2 ~~C~~--C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDA--CDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred             CCccc--CCCCcCCHHHHHHHHcc
Confidence            67988  99999999999999874

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=94.53  E-value=0.032  Score=46.15  Aligned_cols=27  Identities=44%  Similarity=0.997  Sum_probs=25.2

Q ss_pred             CCCCeecCcccccccccChHHHHHHHH
Q 027872           69 SERPYACPYEGCEKAYIHEYKLKLHLK   95 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~~~~L~~H~~   95 (217)
                      ++|||+|++.||.|+|...-.|+-|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~l  372 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHML  372 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhh
Confidence            469999999999999999999999985

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=0.0058  Score=47.33  Aligned_cols=87  Identities=17%  Similarity=0.216  Sum_probs=66.7

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccc----------cCCCCCCeecCc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYG----------SASSERPYACPY   77 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~----------~H~~ekp~~C~~   77 (217)
                      +.+.|+...|...|........|-.+-++        ..|+.|.+.|.+...|..|..          +-.|.-.|.|-+
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~--------~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~Clv  149 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHG--------NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLV  149 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhccc--------chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence            34778877888999988877777654433        345888999998888887754          224566899999


Q ss_pred             ccccccccChHHHHHHHHhhCCCCC
Q 027872           78 EGCEKAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        78 ~~C~k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      +||+..|.+....+.|+-..|....
T Consensus       150 EgCt~KFkT~r~RkdH~I~~Hk~Pa  174 (253)
T KOG4173|consen  150 EGCTEKFKTSRDRKDHMIRMHKYPA  174 (253)
T ss_pred             HhhhhhhhhhhhhhhHHHHhccCCc
Confidence            9999999999999999977676543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.13  E-value=0.018  Score=29.77  Aligned_cols=23  Identities=35%  Similarity=0.742  Sum_probs=19.8

Q ss_pred             eecCCCCCCccccChhhHHHHHHhh
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      |.|  ..|++.|.....|..|+++.
T Consensus         2 ~~C--~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYC--DACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBB--TTTTBBBSSHHHHHCCTTSH
T ss_pred             CCc--ccCCCCcCCHHHHHHHHccC
Confidence            679  57999999999999998754

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.62  E-value=0.066  Score=27.20  Aligned_cols=21  Identities=29%  Similarity=0.689  Sum_probs=17.4

Q ss_pred             eecCcccccccccChHHHHHHHHh
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      ..|++  ||+.| ....|.+|+++
T Consensus         3 ~~C~~--CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPI--CGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCC--CCCEE-CHHHHHHHHHh
Confidence            46988  99999 57889999864

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.60  E-value=0.061  Score=52.30  Aligned_cols=81  Identities=25%  Similarity=0.348  Sum_probs=52.3

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCC-cccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNA-AVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp-~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      .|+-.|-|+|  +.|+..|.....|-.|+|.-+.+.. -.|. .....+..        .+-..--.+.+||.|..  |.
T Consensus       459 L~S~~kt~~c--pkc~~~yk~a~~L~vhmRskhp~~~~~~c~-~gq~~~~~--------arg~~~~~~~~p~~C~~--C~  525 (1406)
T KOG1146|consen  459 LHSFFKTLKC--PKCNWHYKLAQTLGVHMRSKHPESQSAYCK-AGQNHPRL--------ARGEVYRCPGKPYPCRA--CN  525 (1406)
T ss_pred             eecccccccC--CccchhhhhHHHhhhcccccccccchhHhH-hccccccc--------cccccccCCCCccccee--ee
Confidence            3555688999  6899999999999999997332111 1110 00011110        00000113568999998  99


Q ss_pred             ccccChHHHHHHHHh
Q 027872           82 KAYIHEYKLKLHLKR   96 (217)
Q Consensus        82 k~F~~~~~L~~H~~~   96 (217)
                      ..|+...+|.+||+.
T Consensus       526 ~stttng~LsihlqS  540 (1406)
T KOG1146|consen  526 YSTTTNGNLSIHLQS  540 (1406)
T ss_pred             eeeecchHHHHHHHH
Confidence            999999999999974

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=93.21  E-value=0.16  Score=35.83  Aligned_cols=17  Identities=29%  Similarity=0.815  Sum_probs=13.4

Q ss_pred             CCCCeecCcccccccccCh
Q 027872           69 SERPYACPYEGCEKAYIHE   87 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~~   87 (217)
                      +..|-.|+.  ||..|...
T Consensus        23 nk~PivCP~--CG~~~~~~   39 (108)
T PF09538_consen   23 NKDPIVCPK--CGTEFPPE   39 (108)
T ss_pred             CCCCccCCC--CCCccCcc
Confidence            457888988  99888755

The function of members of this family is unknown.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.96  E-value=0.086  Score=28.73  Aligned_cols=23  Identities=26%  Similarity=0.658  Sum_probs=20.7

Q ss_pred             CeecCcccccccccChHHHHHHHHh
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      +|-|.+  |++.|.....+..|++.
T Consensus         3 ~~~C~~--C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKL--CNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccc--cCCccCCHHHHHHHHCh
Confidence            688999  99999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.50  E-value=0.12  Score=26.25  Aligned_cols=21  Identities=29%  Similarity=0.746  Sum_probs=16.8

Q ss_pred             eecCCCCCCccccChhhHHHHHHh
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIAS   33 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~   33 (217)
                      ..|  +.||+.| ....|..|+++
T Consensus         3 ~~C--~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPC--PICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcC--CCCCCEE-CHHHHHHHHHh
Confidence            468  5799999 46779999875

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.47  E-value=0.083  Score=49.65  Aligned_cols=9  Identities=11%  Similarity=0.313  Sum_probs=3.9

Q ss_pred             ccccccChH
Q 027872           80 CEKAYIHEY   88 (217)
Q Consensus        80 C~k~F~~~~   88 (217)
                      |.-+|+...
T Consensus      1305 c~VtFNstG 1313 (1516)
T KOG1832|consen 1305 CAVTFNSTG 1313 (1516)
T ss_pred             eEEEeccCc
Confidence            444444433

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=91.36  E-value=0.24  Score=42.17  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=44.1

Q ss_pred             eecCCCCCCccccChhhHHHHHHh--hc---CCCCcccCCcCCCCCCCcccCCCCcccc---cccCCCCCCeecCccccc
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIAS--HH---EKNAAVEVPRYATPPERITKTPKPPAGV---YGSASSERPYACPYEGCE   81 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~--H~---~~kp~~c~~~~~~~~~~~~~~~~~l~~H---~~~H~~ekp~~C~~~~C~   81 (217)
                      |.|  ..|...|......+.|.++  |.   ..+...-.    .+.--.|........-   ...-.+.-++.|.+  |.
T Consensus         4 ftC--~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lP----PItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~--c~   75 (390)
T KOG2785|consen    4 FTC--NTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLP----PITAEEFNEKVLSDDSEKEENLEEAESVVYCEA--CN   75 (390)
T ss_pred             cee--eceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCC----CcCHHHHhHHHhhhhhhhhhhhhhcccceehHH--hh
Confidence            789  5899999998888888773  32   11111000    0000001000000000   00013456899999  99


Q ss_pred             ccccChHHHHHHHHh
Q 027872           82 KAYIHEYKLKLHLKR   96 (217)
Q Consensus        82 k~F~~~~~L~~H~~~   96 (217)
                      |.|........|++.
T Consensus        76 k~~~s~~a~~~hl~S   90 (390)
T KOG2785|consen   76 KSFASPKAHENHLKS   90 (390)
T ss_pred             ccccChhhHHHHHHH
Confidence            999999999999875

>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]

Probab=91.29  E-value=0.048  Score=45.68  Aligned_cols=72  Identities=32%  Similarity=0.562  Sum_probs=46.6

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIH   86 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~   86 (217)
                      .+||+|.+|.|.+.+.....|+.|..+-+              |...-.......-|.-.....|||.|++  |.+++.-
T Consensus       347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h--------------~s~i~~~s~~~~ph~~~~~~nk~~r~~i--~~~~~k~  410 (442)
T KOG4124|consen  347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGH--------------CSPITTPTPAPIPHQGFVVENKPYRCEV--CSKRYKN  410 (442)
T ss_pred             cCCCCCCCCcchhhcccCcceeeccccCc--------------CCCCCCCCCCCCCcceeeeccCcccChh--hhhhhcc
Confidence            58999999999999999888888754221              1111111112222333334579999999  9998877


Q ss_pred             hHHHHHHH
Q 027872           87 EYKLKLHL   94 (217)
Q Consensus        87 ~~~L~~H~   94 (217)
                      -..|+-|.
T Consensus       411 ~~~l~~~~  418 (442)
T KOG4124|consen  411 LNGLKYHR  418 (442)
T ss_pred             CCCCCcee
Confidence            66665553

>smart00451 ZnF_U1 U1-like zinc finger

Probab=90.56  E-value=0.23  Score=26.94  Aligned_cols=24  Identities=17%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhh
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      +|.|  ..|++.|.....|..|++..
T Consensus         3 ~~~C--~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYC--KLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEc--cccCCccCCHHHHHHHHChH
Confidence            6889  57999999999999997754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=90.32  E-value=0.36  Score=29.32  Aligned_cols=28  Identities=36%  Similarity=0.750  Sum_probs=22.7

Q ss_pred             CeecCcccccccccChHHHHHHHHhhCCCCC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      .|.|++  |++. .....|..|....|....
T Consensus         2 ~f~CP~--C~~~-~~~~~L~~H~~~~H~~~~   29 (54)
T PF05605_consen    2 SFTCPY--CGKG-FSESSLVEHCEDEHRSES   29 (54)
T ss_pred             CcCCCC--CCCc-cCHHHHHHHHHhHCcCCC
Confidence            489999  9995 456789999998887754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.35  E-value=0.38  Score=27.86  Aligned_cols=28  Identities=36%  Similarity=0.664  Sum_probs=19.2

Q ss_pred             CCCCeecCcccccccccC----hHHHHHHHHhhC
Q 027872           69 SERPYACPYEGCEKAYIH----EYKLKLHLKREH   98 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~----~~~L~~H~~~~h   98 (217)
                      +..-..|.+  |++.|..    .++|.+|++..|
T Consensus        13 ~~~~a~C~~--C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   13 DKKKAKCKY--CGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             CSS-EEETT--TTEE-----SSTHHHHHHHHHTT
T ss_pred             CcCeEEeCC--CCeEEeeCCCcHHHHHHhhhhhC
Confidence            456679999  9999876    488999996655

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG4377 consensus Zn-finger protein [General function prediction only]

Probab=88.35  E-value=0.67  Score=39.86  Aligned_cols=83  Identities=18%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCC-------cccCCcCCCCCCCcccCCCCcccccccCCCCC----------
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNA-------AVEVPRYATPPERITKTPKPPAGVYGSASSER----------   71 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp-------~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ek----------   71 (217)
                      .|.|.|.+|.|   .-+++..|-..|+...-       |.|....   |...|.-..+-..|.+-+.++.          
T Consensus       313 syhC~~~~C~k---sTsdV~~h~nFht~~~n~GfrrthfhC~r~g---CTdtfK~~khk~yh~kdda~~~dGfkkf~k~e  386 (480)
T KOG4377|consen  313 SYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTHFHCQRIG---CTDTFKDSKHKPYHYKDDAGEIDGFKKFFKDE  386 (480)
T ss_pred             cchhhhcccCc---ccccccccCccccccccCceecceeEEeccC---CccccccccccccccCcchhhhhhhhhhhccc
Confidence            37788888988   44566677777753221       2343222   3344444444444554443321          


Q ss_pred             --------------CeecCcccccccccChHHHHHHHHhh
Q 027872           72 --------------PYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        72 --------------p~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                                    -|-|.+.||+.+|...+.+..|.|.|
T Consensus       387 ~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm~shkrkh  426 (480)
T KOG4377|consen  387 NCAYTGCKYSGICNHFHCDRLGCEATLYSVSQMASHKRKH  426 (480)
T ss_pred             cCCccCcccccceeeeeecccCCceEEEehhhhhhhhhhh
Confidence                          13466689999999999999998874

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.58  E-value=1.3  Score=37.31  Aligned_cols=84  Identities=17%  Similarity=0.257  Sum_probs=52.7

Q ss_pred             ecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccc--c--ccccC
Q 027872           11 ICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGC--E--KAYIH   86 (217)
Q Consensus        11 ~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C--~--k~F~~   86 (217)
                      .|.  .|.+.|.....|..|+|.-+ ++.|.|...- ......|..-..|.+|.+    .--|.|.+..|  |  ..|..
T Consensus       222 ~C~--FC~~~FYdDDEL~~HcR~~H-E~ChICD~v~-p~~~QYFK~Y~~Le~HF~----~~hy~ct~qtc~~~k~~vf~~  293 (493)
T COG5236         222 LCI--FCKIYFYDDDELRRHCRLRH-EACHICDMVG-PIRYQYFKSYEDLEAHFR----NAHYCCTFQTCRVGKCYVFPY  293 (493)
T ss_pred             hhh--hccceecChHHHHHHHHhhh-hhhhhhhccC-ccchhhhhCHHHHHHHhh----cCceEEEEEEEecCcEEEecc
Confidence            485  49999999999999988543 4444442222 222234555455555543    23477766445  3  35788


Q ss_pred             hHHHHHHHHhhCCCCC
Q 027872           87 EYKLKLHLKREHPGHM  102 (217)
Q Consensus        87 ~~~L~~H~~~~h~~~~  102 (217)
                      ...|..|+...|+...
T Consensus       294 ~~el~~h~~~~h~~~~  309 (493)
T COG5236         294 HTELLEHLTRFHKVNA  309 (493)
T ss_pred             HHHHHHHHHHHhhccc
Confidence            8889999987776544

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=86.72  E-value=0.62  Score=31.48  Aligned_cols=24  Identities=29%  Similarity=0.632  Sum_probs=20.9

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhh
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      .+.|.  .|++.|.....|..|++.+
T Consensus        50 ~~~C~--~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCP--YCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBS--SSS-EESSHHHHHHHHHHT
T ss_pred             CCCCC--ccCCCCcCHHHHHHHHcCc
Confidence            69995  6999999999999999976

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=86.48  E-value=0.46  Score=46.54  Aligned_cols=73  Identities=14%  Similarity=0.156  Sum_probs=54.3

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIH   86 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~   86 (217)
                      ..+|.|.  .|.-.|.....|..|.+.-                -+.++....+.-|+..|..-++| |.+  |...|..
T Consensus      1282 ~~~~~~~--~~~~~~~~~~~l~~~~~k~----------------~~~~~~~~~~~~~~l~~~d~~~~-c~~--c~~~~~~ 1340 (1406)
T KOG1146|consen 1282 THRYLCR--QCKMAFDGEAPLTAHQRKF----------------CFAGRGSGGSMPPPLRVPDCTYH-CLA--CEVLLSG 1340 (1406)
T ss_pred             chhHHHH--HHHhhhcchhHHHHHHHHH----------------HhccCccccCCCCcccCcccccc-chH--HHhhcch
Confidence            3567774  6888888888777776221                23345555666777888888899 999  9999999


Q ss_pred             hHHHHHHHHhhCCC
Q 027872           87 EYKLKLHLKREHPG  100 (217)
Q Consensus        87 ~~~L~~H~~~~h~~  100 (217)
                      ...|..||+..+..
T Consensus      1341 ~~alqihm~~~~~~ 1354 (1406)
T KOG1146|consen 1341 REALQIHMRSSAHR 1354 (1406)
T ss_pred             hHHHHHHHHHhhhc
Confidence            99999999974433

>KOG1834 consensus Calsyntenin [Extracellular structures]

Probab=85.42  E-value=0.54  Score=42.90  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=12.2

Q ss_pred             CCcccccccCCCCCcccccccccccchhcc
Q 027872          163 PATLNVVRKQQWTPKEEVYEEEDSEETEED  192 (217)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~eed~ee~eed  192 (217)
                      ...|.+.|-..+...+..+++.++|++||.
T Consensus       876 altItVNPme~~e~~gs~ee~~e~EeeeE~  905 (952)
T KOG1834|consen  876 ALTITVNPMEDYEKGGSIEEESEEEEEEET  905 (952)
T ss_pred             cceEEecchHhcccCCcccccccccccccc
Confidence            344455543333333333333333333333

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=84.37  E-value=0.25  Score=39.42  Aligned_cols=24  Identities=25%  Similarity=0.569  Sum_probs=17.3

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHh
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIAS   33 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~   33 (217)
                      .||| |-|  |++.|....-|..|++.
T Consensus         9 ~kpw-cwy--cnrefddekiliqhqka   32 (341)
T KOG2893|consen    9 DKPW-CWY--CNREFDDEKILIQHQKA   32 (341)
T ss_pred             CCce-eee--cccccchhhhhhhhhhh
Confidence            3555 444  99999988888887663

>smart00614 ZnF_BED BED zinc finger

Probab=83.31  E-value=1  Score=26.78  Aligned_cols=25  Identities=40%  Similarity=0.856  Sum_probs=19.5

Q ss_pred             eecCcccccccccCh-----HHHHHHHHhhCC
Q 027872           73 YACPYEGCEKAYIHE-----YKLKLHLKREHP   99 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~-----~~L~~H~~~~h~   99 (217)
                      -.|.+  |++.+...     ++|.+|++..|+
T Consensus        19 a~C~~--C~~~l~~~~~~gTs~L~rHl~~~h~   48 (50)
T smart00614       19 AKCKY--CGKKLSRSSKGGTSNLRRHLRRKHP   48 (50)
T ss_pred             EEecC--CCCEeeeCCCCCcHHHHHHHHhHCc
Confidence            47988  99988765     699999985454

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PRK04860 hypothetical protein; Provisional

Probab=83.16  E-value=0.87  Score=34.44  Aligned_cols=29  Identities=7%  Similarity=-0.050  Sum_probs=24.6

Q ss_pred             ChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccC
Q 027872           23 HEYKLKNHIASHHEKNAAVEVPRYATPPERITKT   56 (217)
Q Consensus        23 ~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~   56 (217)
                      ....+++|.++|++.++|.|     ..|+..|..
T Consensus       127 ~~~~~rrH~ri~~g~~~YrC-----~~C~~~l~~  155 (160)
T PRK04860        127 HQLTVRRHNRVVRGEAVYRC-----RRCGETLVF  155 (160)
T ss_pred             eeCHHHHHHHHhcCCccEEC-----CCCCceeEE
Confidence            67789999999999999999     777776643

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=82.87  E-value=0.79  Score=27.93  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=28.1

Q ss_pred             CCCCCeecCcccccccccChHHHHHHHHhhCCCCC
Q 027872           68 SSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        68 ~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      .|+--+.|+-  |+..|..+....+|....|..-.
T Consensus        13 DGE~~lrCPR--C~~~FR~~K~Y~RHVNKaH~~~~   45 (65)
T COG4049          13 DGEEFLRCPR--CGMVFRRRKDYIRHVNKAHGWLF   45 (65)
T ss_pred             CCceeeeCCc--hhHHHHHhHHHHHHhhHHhhhhh
Confidence            5788899988  99999999999999987776533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		4e-04
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		5e-04

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 37/98 (37%)
Query: 6   QENYHICPYPDC---GKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAG 62
           ++N H+C + +C   GK +  +YKL NHI  H                            
Sbjct: 54  EQNNHVCYWEECPREGKSFKAKYKLVNHIRVH---------------------------- 85
Query: 63  VYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
                + E+P+ CP+ GC K +     LK+H KR H G
Sbjct: 86  -----TGEKPFPCPFPGCGKIFARSENLKIH-KRTHTG 117

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 33/92 (35%)
Query: 3   THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAG 62
            H+ E    C +  CGKR++ ++ L+ H+  H                            
Sbjct: 56  VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH---------------------------- 87
Query: 63  VYGSASSERPYACPYEGCEKAYIHEYKLKLHL 94
                + +RPY CP++GC K +     LK H+
Sbjct: 88  -----TGDRPYVCPFDGCNKKFAQSTNLKSHI 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2epa_A	72	Krueppel-like factor 10; transforming growth facto	5e-08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	7e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	7e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-04
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	5e-04

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 47.8 bits (114), Expect = 5e-08
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 34/97 (35%)

Query: 2  KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPA 61
             S+   HIC +P CGK Y     LK H  +H                           
Sbjct: 10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH--------------------------- 42

Query: 62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREH 98
                + E+P++C ++GCE+ +    +L  H +R H
Sbjct: 43 ------TGEKPFSCSWKGCERRFARSDELSRH-RRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 68  SSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
           S  R + C + GC K Y     LK H  R H G
Sbjct: 13  SRIRSHICSHPGCGKTYFKSSHLKAHT-RTHTG 44

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 33/100 (33%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           M+ H+ E  H C +  C K Y+    LK H+ SH                          
Sbjct: 59  MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH-------------------------- 92

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
                  + E+PY C +EGC KA+ +      H  R H  
Sbjct: 93  -------TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 32/95 (33%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           +++H+ E  ++C +  C K +++      H    H                         
Sbjct: 89  LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH------------------------- 123

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 95
                  S+E+PY C   GC K Y     L+ H+K
Sbjct: 124 -------SNEKPYVCKLPGCTKRYTDPSSLRKHVK 151

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 30/105 (28%)

Query: 13  PY--PDCGKRYAHEYKLKNHIASHH----EKNAAVEVPRYATPPERITKTPKPPAGVYGS 66
                 C + +  + +L +HI S H     K        +       ++  +P       
Sbjct: 3   DCRWDGCSQEFDSQEQLVHHINSEHIHGERKE-------FVCHWGGCSRELRP-----FK 50

Query: 67  ASS-----------ERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
           A             E+P+ C +EGC K+Y     LK H  R H G
Sbjct: 51  AQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH-LRSHTG 94

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 34/92 (36%)

Query: 10  HICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASS 69
           ++C + +CGK +    +LK H  SH                                 + 
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSH---------------------------------TQ 28

Query: 70  ERPYACPYEGCEKAYIHEYKLKLHLKREHPGH 101
           + PY CP+EGC+K +    +LK H ++ H G+
Sbjct: 29  QLPYECPHEGCDKRFSLPSRLKRH-EKVHAGY 59

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 34/100 (34%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
           ++ H+ E    CP+P CGK +A    LK H  +H                          
Sbjct: 82  IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH-------------------------- 115

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
                  + E+P+ C +EGC++ + +    K H    H  
Sbjct: 116 -------TGEKPFKCEFEGCDRRFANSSDRKKH-MHVHTS 147

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 23/110 (20%)

Query: 3   THSQENYHICPYPDCGKRYAHEYKLKNHIASHH-EKNAAVEVPRYATPPERITKTPKPPA 61
               +         C + ++  ++L  H+   H           Y     R  K+     
Sbjct: 19  IDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKS----- 71

Query: 62  GVYGSASS-----------ERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
                A             E+P+ CP+ GC K +     LK+H KR H G
Sbjct: 72  ---FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTG 117

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 34/97 (35%)

Query: 4   HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGV 63
             +   H C YP C K Y     LK H+ +H                             
Sbjct: 10  LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTH----------------------------- 40

Query: 64  YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
               + E+PY C +EGC+  +    +L  H  R+H G
Sbjct: 41  ----TGEKPYKCTWEGCDWRFARSDELTRH-YRKHTG 72

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 35/96 (36%)

Query: 1  MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
          ++TH+ E  + C +  C  R+A   +L  H   H                          
Sbjct: 37 LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH-------------------------- 70

Query: 61 AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKR 96
                 +  +P+ C    C +++     L LH+KR
Sbjct: 71 -------TGAKPFQCGV--CNRSFSRSDHLALHMKR 97

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 34/92 (36%)

Query: 10  HICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASS 69
           H C Y  CGK Y     LK H+ +H                                 + 
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAHLRTH---------------------------------TG 32

Query: 70  ERPYACPYEGCEKAYIHEYKLKLHLKREHPGH 101
           E+PY C ++GC   +    +L  H  R+H GH
Sbjct: 33  EKPYHCDWDGCGWKFARSDELTRH-YRKHTGH 63

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 33/97 (34%)

Query: 4   HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGV 63
            S  +   C +P CG+ +++   L +H                     +           
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHK--------------------KYQHI------- 34

Query: 64  YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
                 ++ ++CP   C K++  +  LK H  + H  
Sbjct: 35  -----HQKSFSCPEPACGKSFNFKKHLKEH-MKLHSD 65

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 34/100 (34%)

Query: 1   MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPP 60
                    +IC + DCG  Y   +KL+ H+  H                          
Sbjct: 4   KALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH-------------------------- 37

Query: 61  AGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
                  + E+P+ C  EGCEK +   + L  H    H G
Sbjct: 38  -------TGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTG 69

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} Length = 37

 Score = 35.4 bits (82), Expect = 5e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 67  ASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
              ++ + C  +GC K Y     L+ HL R H G
Sbjct: 3   PGKKKQHICHIQGCGKVYGKTSHLRAHL-RWHTG 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.86
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.84
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.84
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.83
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.83
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.82
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.82
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.82
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.82
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.8
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.8
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.79
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.79
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.78
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.78
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.77
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.77
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.76
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.75
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.74
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.74
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.73
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.72
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.72
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.71
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.71
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.7
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.68
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.68
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.68
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.68
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.67
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.66
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.66
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.65
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.64
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.63
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.63
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.6
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.6
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.59
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.59
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.54
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.53
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.53
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.5
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.5
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.49
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.48
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.47
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.46
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.46
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.41
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.41
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.4
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.37
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.37
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.35
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.34
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.34
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.33
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.33
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.33
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.33
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.33
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.33
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.32
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.32
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.31
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.31
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.31
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.3
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.3
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.29
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.29
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.28
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.28
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.28
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.27
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.25
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.25
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.24
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.24
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.21
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.2
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.19
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.19
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.18
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.17
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.16
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.16
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.15
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.13
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.13
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.11
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.1
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.09
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.09
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.08
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.06
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.05
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	99.05
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.05
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.04
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.03
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.03
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.02
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.01
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.01
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.0
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.0
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.0
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.0
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.0
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.0
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	99.0
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.0
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.0
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.98
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.97
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.97
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.97
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.96
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.96
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.95
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.95
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.88
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.85
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.84
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.84
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.83
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.83
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.79
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.77
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.77
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.75
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.75
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.75
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.71
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.69
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.69
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.66
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.65
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.65
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.64
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.61
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.59
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.58
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.54
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.53
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.52
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.52
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.52
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.51
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.5
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.48
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.46
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.46
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.45
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.45
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.44
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.42
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.42
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.42
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.41
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.4
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.39
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.38
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.74
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.38
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.38
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.37
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.37
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.37
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.7
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.34
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.32
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.32
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.31
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.31
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.28
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.27
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.27
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.26
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.25
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.57
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.24
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.24
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.55
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.22
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.2
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.19
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.16
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.45
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.15
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.15
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.42
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.66
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.29
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.12
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.01
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.54
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.53
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.2
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.36
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	90.64
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	90.33
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	85.66
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	84.1
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	83.62
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	80.84

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=3.6e-25  Score=162.21  Aligned_cols=91  Identities=21%  Similarity=0.277  Sum_probs=87.2

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      ++|+|++||+|  ++|++.|.+...|..|+++|++++||.|     ..|++.|.+...|..|+++|++++||.|.+  |+
T Consensus        15 ~~h~Gek~y~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C-----~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~   85 (133)
T 2lt7_A           15 LIVDGRVYYIC--IVCKRSYVCLTSLRRHFNIHSWEKKYPC-----RYCEKVFPLAEYRTKHEIHHTGERRYQCLA--CG   85 (133)
T ss_dssp             EEETTEEEEEE--TTTCCEESCHHHHHHHHHHHHCCSCEEC-----SSSSCEESSHHHHHHHHHHHHTCCCEEESS--SC
T ss_pred             eecCCCcCeEC--CCCCCCcCCHHHHHHHHHHcCCCCCeeC-----CccCeecccccchhhhccccCCCccccCCC--CC
Confidence            57999999999  5899999999999999999999999999     999999999999999999999999999999  99


Q ss_pred             ccccChHHHHHHHHhhCCCC
Q 027872           82 KAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~h~~~  101 (217)
                      ++|.+.+.|..|+++||+..
T Consensus        86 k~F~~~~~L~~H~~~hh~~~  105 (133)
T 2lt7_A           86 KSFINYQFMSSHIKSVHSQD  105 (133)
T ss_dssp             CEESSHHHHHHHHHHHTCCC
T ss_pred             CCcCCHHHHHHHhHHhcCCC
Confidence            99999999999999988754

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=138.88  Aligned_cols=93  Identities=14%  Similarity=0.290  Sum_probs=84.8

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHh--hcCCCCcc-cCCcCCCCCCCcc--cCCCCcccccccCCCCCCeec
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIAS--HHEKNAAV-EVPRYATPPERIT--KTPKPPAGVYGSASSERPYAC   75 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~--H~~~kp~~-c~~~~~~~~~~~~--~~~~~l~~H~~~H~~ekp~~C   75 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++  |.+.+++. |     ..|++.|  .....|..|+++|++++||.|
T Consensus        11 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C-----~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C   83 (115)
T 2dmi_A           11 GSIFTGASKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETD-----NNNPKRWSKPRKRSLLEMEGKEDAQKVLKC   83 (115)
T ss_dssp             CCCCCCCCSEEB--SSSSCEESSHHHHHHHHHHTCCCBCSCCCCC-----CCCCSCCSSCCCCCCCCCCCSCCCCSSCBC
T ss_pred             eeeeCCCCCEEC--CccCchhcCHHHHHHHHHHhCccccCCCccC-----CCCCcccccccHHHHHHHhhccCCCcceEC
Confidence            578999999999  5899999999999999999  77777764 6     8999999  999999999999999999999


Q ss_pred             CcccccccccChHHHHHHHHhhCCCCC
Q 027872           76 PYEGCEKAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        76 ~~~~C~k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      .+  |++.|.+...|.+|+++||....
T Consensus        84 ~~--C~k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           84 MY--CGHSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             SS--SCCBCSSHHHHHHHHHHTTTTTC
T ss_pred             CC--CCCccCCHHHHHHHHHHhCCccc
Confidence            99  99999999999999999776533

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.84  E-value=5.4e-22  Score=134.75  Aligned_cols=86  Identities=21%  Similarity=0.345  Sum_probs=80.0

Q ss_pred             CCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccccccc
Q 027872            6 QENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYI   85 (217)
Q Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~   85 (217)
                      |++||.|.++.|++.|.+...|..|+++|++.+||.|     ..|++.|.+...|..|+++|++++||.|.+  |++.|.
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC-----RICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFA   73 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEEC-----TTTCCEESCHHHHHHHHHHHHCCCCEECTT--TCCEES
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccC-----CCCCcccCCHHHHHHHHHHcCCCCCccCCC--CCchhC
Confidence            5799999644799999999999999999999999999     899999999999999999999999999999  999999


Q ss_pred             ChHHHHHHHHhhC
Q 027872           86 HEYKLKLHLKREH   98 (217)
Q Consensus        86 ~~~~L~~H~~~~h   98 (217)
                      +.+.|.+|+++|+
T Consensus        74 ~~~~l~~H~~~H~   86 (90)
T 1a1h_A           74 RSDERKRHTKIHL   86 (90)
T ss_dssp             SHHHHHHHHGGGG
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999999854

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=1.1e-21  Score=134.90  Aligned_cols=89  Identities=22%  Similarity=0.375  Sum_probs=84.1

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEK   82 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k   82 (217)
                      .+++++||+|  +.|++.|.+...|..|+++|++.+||.|     ..|++.|.+...|..|+++|++++||.|.+  |++
T Consensus         2 s~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~   72 (96)
T 2dmd_A            2 SSGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKC-----KTCDYAAADSSSLNKHLRIHSDERPFKCQI--CPY   72 (96)
T ss_dssp             CCCCCCCCCB--TTTTBCCCCHHHHHHHGGGCCCCCSEEC-----SSSCCEESSHHHHHHHHHHSCCCCCEECSS--SSC
T ss_pred             CCCCCcCeEC--CCCCCccCCHHHHHHHHHhcCCCCCEeC-----CCCCCccCCHHHHHHHHHHhCCCCCccCCC--CCC
Confidence            5788999999  5799999999999999999999999999     899999999999999999999999999999  999


Q ss_pred             cccChHHHHHHHHhhCCC
Q 027872           83 AYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        83 ~F~~~~~L~~H~~~~h~~  100 (217)
                      .|.....|..|+++|++.
T Consensus        73 ~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           73 ASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             EESSHHHHHHHHTTCCSC
T ss_pred             ccCCHHHHHHHHHHhcCC
Confidence            999999999999985544

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.7e-21  Score=136.94  Aligned_cols=93  Identities=13%  Similarity=0.128  Sum_probs=85.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGC   80 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C   80 (217)
                      +++|++++||+|  +.|++.|.....|..|+++|.  +||.|     .+|++.|.....|..|++ |++++||+|.+  |
T Consensus         8 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~H~--~~~~C-----~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~--C   75 (107)
T 1wjp_A            8 ASPVENKEVYQC--RLCNAKLSSLLEQGSHERLCR--NAAVC-----PYCSLRFFSPELKQEHES-KCEYKKLTCLE--C   75 (107)
T ss_dssp             CCCCCCCCCCBC--TTTCCBCSSHHHHHHHHHHHH--HSBCC-----TTTCCCBSSHHHHHHHHH-HCSTGGGEEGG--G
T ss_pred             CcccCCCcCeEC--CCCCCccCCHHHHHHHHHHCC--CCccC-----CCCCCccCCHHHHHHHHH-cCCCCCccCcc--c
Confidence            578999999999  579999999999999999994  78999     899999999999999996 99999999999  9


Q ss_pred             cccccChHHHHHHHHhhCCCCCCcc
Q 027872           81 EKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        81 ~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      ++.|.+...|.+|++.+|.+..+..
T Consensus        76 ~~~f~~~~~L~~H~~~~H~~~~~~~  100 (107)
T 1wjp_A           76 MRTFKSSFSIWRHQVEVHNQNNMAP  100 (107)
T ss_dssp             TEECSSHHHHHHHHHHTSCCCCCCC
T ss_pred             cchhCCHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999986688876554

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=4.1e-21  Score=143.22  Aligned_cols=93  Identities=29%  Similarity=0.530  Sum_probs=66.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCC--CCCcccCCCCccccc-ccCCCCCCeecCc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATP--PERITKTPKPPAGVY-GSASSERPYACPY   77 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~--~~~~~~~~~~l~~H~-~~H~~ekp~~C~~   77 (217)
                      +++|++++||.|.++.|++.|.+...|..|+++|++.+||.|     .+  |++.|.+...|.+|+ ++|++++||.|.+
T Consensus        59 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  133 (155)
T 2gli_A           59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC-----EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL  133 (155)
T ss_dssp             THHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEEC-----CSTTCCCEESSSSTTHHHHHHTTCSCCCEECCS
T ss_pred             HHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeC-----CCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCC
Confidence            345667777777433477777777777777777777777777     65  777777777777776 6777777777754


Q ss_pred             ccccccccChHHHHHHHHhhC
Q 027872           78 EGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        78 ~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      ++|++.|.+.+.|..|+++||
T Consensus       134 ~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          134 PGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             TTTCCEESSHHHHHHHHHHSC
T ss_pred             CCCccccCCHHHHHHHHHhhc
Confidence            457777777777777777755

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.82  E-value=6.1e-21  Score=134.53  Aligned_cols=89  Identities=18%  Similarity=0.317  Sum_probs=84.7

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      ..|++++||.| .  |++.|.+...|..|+++|++.+||.|     ..|++.|.+...|.+|+++|++++||.|.+  |+
T Consensus         3 ~~h~~~k~~~C-~--C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~   72 (110)
T 2csh_A            3 SGSSGDKLYPC-Q--CGKSFTHKSQRDRHMSMHLGLRPYGC-----GVCGKKFKMKHHLVGHMKIHTGIKPYECNI--CA   72 (110)
T ss_dssp             CCCCCCCCEEC-T--TSCEESSHHHHHHHHHHHSCCCSEEC-----TTTSCEESSSHHHHHHHTTTCCCCCEECSS--SC
T ss_pred             CCCCCCCCEec-c--CCCccCCHHHHHHHHHHcCCCcCccC-----CCCCcccCCHHHHHHHHHHcCCCCCeeCCC--Cc
Confidence            47999999999 3  99999999999999999999999999     899999999999999999999999999999  99


Q ss_pred             ccccChHHHHHHHHhhCCC
Q 027872           82 KAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~h~~  100 (217)
                      +.|.+...|.+|+++||..
T Consensus        73 ~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           73 KRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             CEESCHHHHHHHHHHHHHH
T ss_pred             chhcCHHHHHHHHHHcccc
Confidence            9999999999999987654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.82  E-value=8.1e-22  Score=140.61  Aligned_cols=89  Identities=21%  Similarity=0.394  Sum_probs=74.4

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCC--CCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYAT--PPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~--~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      +++++||.|.++.|++.|.+...|..|+++|++.+||.|     .  .|++.|.+...|..|+++|++++||.|.+  |+
T Consensus         1 a~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~   73 (119)
T 2jp9_A            1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQC-----DFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT--CQ   73 (119)
T ss_dssp             CCSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEEC-----CSTTCCCEESSHHHHHHHHHHHHCCCCEECTT--TC
T ss_pred             CCCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccC-----CCCCCcCccCCHHHHHHHHHHcCCCCCccCCc--cC
Confidence            467888888544588889888888889888888888888     5  68888888888888888888888888888  88


Q ss_pred             ccccChHHHHHHHHhhCC
Q 027872           82 KAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~h~   99 (217)
                      +.|.+...|..|+++|++
T Consensus        74 ~~f~~~~~l~~H~~~h~~   91 (119)
T 2jp9_A           74 RKFSRSDHLKTHTRTHTG   91 (119)
T ss_dssp             CEESCHHHHHHHHHHHHT
T ss_pred             chhCCHHHHHHHHHHhcC
Confidence            888888888888887443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.82  E-value=1.4e-20  Score=131.66  Aligned_cols=91  Identities=20%  Similarity=0.350  Sum_probs=83.6

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEK   82 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k   82 (217)
                      ...++++|.|  +.|++.|.....|..|+++|++.+||.|     .+|++.|.+...|..|+++|++++||.|.+  |++
T Consensus        11 ~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~   81 (106)
T 2ee8_A           11 PSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTC-----DICHKAFRRQDHLRDHRYIHSKEKPFKCQE--CGK   81 (106)
T ss_dssp             CCCCCCCCBC--SSSCCBCSSHHHHHHHHHHHCCSCCCBC-----SSSCCBCSCHHHHHHHGGGSCCCCTTSCSS--SCC
T ss_pred             CcCCCcCeEC--CCCCCccCCHHHHHHHHHHcCCCCCcCC-----CCccchhCCHHHHHHHHHHhCCCCCeECCC--cCC
Confidence            3566889999  5799999999999999999999999999     899999999999999999999999999999  999


Q ss_pred             cccChHHHHHHHHhhCCCCCC
Q 027872           83 AYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        83 ~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      .|.+...|..|+++ |.+..+
T Consensus        82 ~f~~~~~L~~H~~~-H~~~~~  101 (106)
T 2ee8_A           82 GFCQSRTLAVHKTL-HMQTSS  101 (106)
T ss_dssp             CCSSHHHHHHHHHH-TTSCCC
T ss_pred             cccCHHHHHHHHHH-hCCCCC
Confidence            99999999999998 545443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=6.1e-21  Score=130.86  Aligned_cols=90  Identities=24%  Similarity=0.340  Sum_probs=84.2

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCC--CCeecCccccc
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSE--RPYACPYEGCE   81 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~e--kp~~C~~~~C~   81 (217)
                      .+++++|.|  +.|++.|.+...|..|+++|++.+||.|     ..|++.|.+...|..|+++|+++  +||.|.+  |+
T Consensus         2 s~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~   72 (95)
T 2yt9_A            2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSC-----PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CG   72 (95)
T ss_dssp             CCCCSCEEC--SSSCCEESSSHHHHHHHHHSCSSCSEEC-----SSSCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SC
T ss_pred             CCCCCCeEC--CCCCCccCChHHHHHHHHhcCCCCCCcC-----CCCCCccCCHHHHHHHHHHhcCCCCCceECCC--cc
Confidence            468999999  5799999999999999999999999999     89999999999999999999997  9999999  99


Q ss_pred             ccccChHHHHHHHHhhCCCCC
Q 027872           82 KAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      +.|.+...|..|++..|++..
T Consensus        73 ~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           73 KGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             CCBSSHHHHHHHHHHTSCCCS
T ss_pred             chhCCHHHHHHHHHHhcCCCC
Confidence            999999999999986687654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.80  E-value=2.2e-20  Score=129.21  Aligned_cols=89  Identities=22%  Similarity=0.478  Sum_probs=80.9

Q ss_pred             CCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccc
Q 027872            5 SQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAY   84 (217)
Q Consensus         5 tgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F   84 (217)
                      ...++|.|.|+.|++.|.....|..|+++|++.++|.|.+   ..|++.|.+...|.+|+++|++++||.|.+  |++.|
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~---~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f   85 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTW---EGCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSF   85 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCS---SSCCCEESSHHHHHHHHHHHTSCCSCBCSS--SCCBC
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCC---CCCCCccCCHHHHHHHHHHhCCCCCeECCC--CcCcc
Confidence            3468999976679999999999999999999999999921   259999999999999999999999999999  99999


Q ss_pred             cChHHHHHHHHhhC
Q 027872           85 IHEYKLKLHLKREH   98 (217)
Q Consensus        85 ~~~~~L~~H~~~~h   98 (217)
                      .+...|..|+++|+
T Consensus        86 ~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           86 SRSDHLALHMKRHQ   99 (100)
T ss_dssp             SSHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999999854

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1e-20  Score=135.67  Aligned_cols=90  Identities=23%  Similarity=0.418  Sum_probs=51.0

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHh---hcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIAS---HHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEG   79 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~---H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~   79 (217)
                      +|++++||.|  +.|++.|.+...|..|++.   |.+.++|.|     .+|++.|.+...|..|+++|++++||.|.+  
T Consensus        29 ~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--   99 (124)
T 2dlq_A           29 KHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRSEQVFTC-----SVCQETFRRRMELRLHMVSHTGEMPYKCSS--   99 (124)
T ss_dssp             HHSSCCSCBC--TTTCCBCSSHHHHHHHHHHCCCCSCCCCEEC-----SSSCCEESSHHHHHHHHHHHSSSCSEECSS--
T ss_pred             hCCCCCCeEC--CCCCchhcCHHHHHHHHhhhhcCCCCCCeEC-----CCCCCccCCHHHHHHHHHHcCCCCCccCCC--
Confidence            3444444444  2355555444444444442   234444444     566666666666666666666666666666  


Q ss_pred             ccccccChHHHHHHHHhhCCCC
Q 027872           80 CEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        80 C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      |++.|.+...|.+|++++|++.
T Consensus       100 C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A          100 CSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SCCEESSHHHHHHHHHHTSSCS
T ss_pred             ccchhCCHHHHHHHHHHHCCCC
Confidence            6666666666666666555553

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.79  E-value=1.6e-20  Score=125.06  Aligned_cols=81  Identities=19%  Similarity=0.277  Sum_probs=77.8

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChH
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEY   88 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~   88 (217)
                      ||.|  +.|++.|.....|..|+++|++.+||.|     ..|++.|.+...|..|+++|++++||.|.+  |++.|.+..
T Consensus         1 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~   71 (82)
T 2kmk_A            1 SFDC--KICGKSFKRSSTLSTHLLIHSDTRPYPC-----QYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSS   71 (82)
T ss_dssp             CEEC--SSSCCEESSHHHHHHHHHHHHTCCCEEC-----SSSCCEESSHHHHHHHHHHHHTCCCEECTT--TSCEESSHH
T ss_pred             CccC--CCCcccccCchhHHHHHHHcCCCCCeeC-----CcCChhhCCHHHHHHHHHHhcCCCCCcCCC--cchhhCChH
Confidence            7999  5899999999999999999999999999     899999999999999999999999999999  999999999


Q ss_pred             HHHHHHHhhC
Q 027872           89 KLKLHLKREH   98 (217)
Q Consensus        89 ~L~~H~~~~h   98 (217)
                      .|.+|+++|+
T Consensus        72 ~l~~H~~~H~   81 (82)
T 2kmk_A           72 NLITHSRKHT   81 (82)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999999864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.79  E-value=2.8e-20  Score=132.58  Aligned_cols=89  Identities=21%  Similarity=0.420  Sum_probs=84.0

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeec--Cccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYAC--PYEG   79 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C--~~~~   79 (217)
                      ++|++++||.|.|+.|++.|.+...|..|+++|++.+||.|     ..|++.|.+...|..|+++|++++||.|  +.  
T Consensus        29 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--  101 (119)
T 2jp9_A           29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC-----KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS--  101 (119)
T ss_dssp             HHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEEC-----TTTCCEESCHHHHHHHHHHHHTCCCEECCSTT--
T ss_pred             HhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccC-----CccCchhCCHHHHHHHHHHhcCCCCeeCCCCC--
Confidence            57899999999655799999999999999999999999999     9999999999999999999999999999  67  


Q ss_pred             ccccccChHHHHHHHHhh
Q 027872           80 CEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        80 C~k~F~~~~~L~~H~~~~   97 (217)
                      |++.|.+...|.+|+++|
T Consensus       102 C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A          102 CQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCCEESSHHHHHHHHHTC
T ss_pred             CccccCCHHHHHHHHhcC
Confidence            999999999999999873

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.78  E-value=1.7e-20  Score=134.90  Aligned_cols=86  Identities=19%  Similarity=0.435  Sum_probs=55.1

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIH   86 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~   86 (217)
                      +++|.|+++.|++.|.+...|..|+++| +.++|.|     ..|++.|.+...|..|+++|++++||.|.+..|++.|.+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   76 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC-----AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL   76 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEEC-----TTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESC
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeEC-----CCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCC
Confidence            4566664335777777666777776666 6666666     666666666666666766666666676653336677766


Q ss_pred             hHHHHHHHHhhC
Q 027872           87 EYKLKLHLKREH   98 (217)
Q Consensus        87 ~~~L~~H~~~~h   98 (217)
                      ...|..|+++|+
T Consensus        77 ~~~l~~H~~~h~   88 (124)
T 1ubd_C           77 DFNLRTHVRIHT   88 (124)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            666767766533

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.78  E-value=1.9e-20  Score=144.39  Aligned_cols=85  Identities=24%  Similarity=0.469  Sum_probs=44.0

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEK   82 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k   82 (217)
                      +|++++||.|  +.|++.|.+...|..|+++|++++||.|     ..|++.|.+...|..|+++|++++||.|.+  |++
T Consensus        99 ~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~~  169 (190)
T 2i13_A           99 THTGEKPYAC--PECGKSFSQLAHLRAHQRTHTGEKPYKC-----PECGKSFSREDNLHTHQRTHTGEKPYKCPE--CGK  169 (190)
T ss_dssp             HHHTCCCEEC--TTTCCEESSHHHHHHHHHHHHCCCCEEC-----TTTCCEESCHHHHHHHHHHHHCCCCEECTT--TCC
T ss_pred             hcCCCCCCcC--CCCCCccCCHHHHHHHHHHhCCCCCeEC-----CCCCcccCCHHHHHHHHHhcCCCCCeECCC--CCC
Confidence            3444444555  2455555555555555555555555544     455555555555555555555555555555  555


Q ss_pred             cccChHHHHHHHHh
Q 027872           83 AYIHEYKLKLHLKR   96 (217)
Q Consensus        83 ~F~~~~~L~~H~~~   96 (217)
                      .|.+...|..|+++
T Consensus       170 ~f~~~~~L~~H~~~  183 (190)
T 2i13_A          170 SFSRRDALNVHQRT  183 (190)
T ss_dssp             EESSHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHh
Confidence            55555555555544

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.77  E-value=6.6e-20  Score=124.05  Aligned_cols=85  Identities=26%  Similarity=0.525  Sum_probs=78.7

Q ss_pred             CCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCC--CCCCcccCCCCcccccccCCCCCCeecCccccccc
Q 027872            6 QENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYAT--PPERITKTPKPPAGVYGSASSERPYACPYEGCEKA   83 (217)
Q Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~--~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~   83 (217)
                      ..++|.|.++.|++.|.....|..|+++|++.+||.|     .  .|++.|.+...|.+|+++|++++||.|.+  |++.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC-----DWDGCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRA   74 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEEC-----CSTTTCCEESSHHHHHHHHHHHHCCCCEECSS--SSCE
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCC-----CCCCCCCccCCHHHHHHHHHHcCCCCCccCCC--CCcc
Confidence            3578999655599999999999999999999999999     5  59999999999999999999999999998  9999


Q ss_pred             ccChHHHHHHHHhh
Q 027872           84 YIHEYKLKLHLKRE   97 (217)
Q Consensus        84 F~~~~~L~~H~~~~   97 (217)
                      |.....|..|+++|
T Consensus        75 f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999874

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.77  E-value=3.4e-19  Score=112.20  Aligned_cols=58  Identities=33%  Similarity=0.625  Sum_probs=52.5

Q ss_pred             CCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccccccc
Q 027872            6 QENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYI   85 (217)
Q Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~   85 (217)
                      .||||+|  .+|||+|.+.+.|..|+++|                                 +|+|||.|.+  ||++|.
T Consensus         1 SEKpy~C--~~C~k~F~~~~~L~~H~~~H---------------------------------t~ekp~~C~~--C~k~F~   43 (60)
T 4gzn_C            1 SERPFFC--NFCGKTYRDASGLSRHRRAH---------------------------------LGYRPRSCPE--CGKCFR   43 (60)
T ss_dssp             CCCCEEC--TTTCCEESSHHHHHHHHHHH---------------------------------HTCCCEECTT--TCCEES
T ss_pred             CCCCccC--CCCCCEeCCHHHHHHHHHHh---------------------------------CCCcCeECCC--CCCCcC
Confidence            3799999  58999999999999999999                                 4778999998  999999


Q ss_pred             ChHHHHHHHHhhCCCC
Q 027872           86 HEYKLKLHLKREHPGH  101 (217)
Q Consensus        86 ~~~~L~~H~~~~h~~~  101 (217)
                      +.++|.+|+++ |+++
T Consensus        44 ~~~~L~~H~~~-Htge   58 (60)
T 4gzn_C           44 DQSEVNRHLKV-HQNK   58 (60)
T ss_dssp             SHHHHHHHGGG-GSCC
T ss_pred             CHHHHHHHhCc-cCCC
Confidence            99999999987 6654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.76  E-value=1.7e-19  Score=134.59  Aligned_cols=80  Identities=25%  Similarity=0.471  Sum_probs=51.2

Q ss_pred             eecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCC--CCCcccCCCCcccccccCCCCCCeecCcccccccccCh
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATP--PERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHE   87 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~--~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~   87 (217)
                      |.|  +.|++.|.+...|..|+++|++.+||.|     .+  |++.|.+...|.+|+++|++++||.|.+..|++.|.+.
T Consensus        63 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~  135 (155)
T 2rpc_A           63 EEC--PREGKSFKAKYKLVNHIRVHTGEKPFPC-----PFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANS  135 (155)
T ss_dssp             TTC--TTSSCCCSSHHHHHHHTHHHHCCCSEEC-----SCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSH
T ss_pred             cCC--CCcccccCCHHHHHHHHHhcCCCCcccC-----CcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCH
Confidence            556  3566666666666666666666666666     54  66666666666666666666666666533366666666


Q ss_pred             HHHHHHHHh
Q 027872           88 YKLKLHLKR   96 (217)
Q Consensus        88 ~~L~~H~~~   96 (217)
                      ..|.+|+++
T Consensus       136 ~~L~~H~~~  144 (155)
T 2rpc_A          136 SDRKKHMHV  144 (155)
T ss_dssp             HHHHHSSTT
T ss_pred             HHHHHHHHH
Confidence            666666665

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.7e-19  Score=119.47  Aligned_cols=75  Identities=17%  Similarity=0.264  Sum_probs=70.6

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHH-hhcCCCCcccCCcCCCC--CCCcccCCCCcccccccCCCCCCeecCcccc
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIA-SHHEKNAAVEVPRYATP--PERITKTPKPPAGVYGSASSERPYACPYEGC   80 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~-~H~~~kp~~c~~~~~~~--~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C   80 (217)
                      .+++++|.|.++.|++.|.+...|..|++ +|++.+||.|     ..  |++.|.+...|.+|+++|++++||.|.+  |
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C-----~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C   74 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSC-----PEPACGKSFNFKKHLKEHMKLHSDTRDYICEF--S   74 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEEC-----SCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS--S
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeEC-----CCCCCcCccCCHHHHHHHHHHhCCCCCeeCCC--C
Confidence            47899999987779999999999999999 7999999999     77  9999999999999999999999999999  9


Q ss_pred             ccccc
Q 027872           81 EKAYI   85 (217)
Q Consensus        81 ~k~F~   85 (217)
                      +++|.
T Consensus        75 ~k~F~   79 (79)
T 2dlk_A           75 GPSSG   79 (79)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            99994

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.74  E-value=1.1e-18  Score=125.37  Aligned_cols=90  Identities=27%  Similarity=0.493  Sum_probs=82.1

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCC--CCCcccCCCCcccccccCCCCCCeecCccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATP--PERITKTPKPPAGVYGSASSERPYACPYEG   79 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~--~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~   79 (217)
                      ++| +.++|.|  +.|++.|.+...|..|+++|++.+||.|     .+  |++.|.+...|.+|+++|++++||.|++..
T Consensus        28 ~~h-~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~   99 (124)
T 1ubd_C           28 HTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQC-----TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG   99 (124)
T ss_dssp             GGG-SCCCEEC--TTTCCEESSHHHHHHHGGGTSCCCCEEC-----CSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTT
T ss_pred             HHc-CCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCeeC-----CCCCCcCccCCHHHHHHHHHHhCCCCceECCCCC
Confidence            578 8899999  5799999999999999999999999999     65  999999999999999999999999995334


Q ss_pred             ccccccChHHHHHHHHhhCC
Q 027872           80 CEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        80 C~k~F~~~~~L~~H~~~~h~   99 (217)
                      |++.|.+...|.+|+++|+.
T Consensus       100 C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C          100 CNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             CCCCCSSTTTTHHHHHHHC-
T ss_pred             CCCccCCHHHHHHHHHHHcc
Confidence            99999999999999998543

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.74  E-value=4.5e-19  Score=118.70  Aligned_cols=82  Identities=18%  Similarity=0.266  Sum_probs=76.1

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCC--CCCcccCCCCcccccccCCCCCCeecCccc-cccccc
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATP--PERITKTPKPPAGVYGSASSERPYACPYEG-CEKAYI   85 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~--~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~-C~k~F~   85 (217)
                      ||+|+|+.|++.|.....|..|+++|++++||.|     ..  |++.|.+...|.+|+++|++   |.|...+ |++.|.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~   72 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC-----PHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGK   72 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEEC-----CSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEES
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeC-----CCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccC
Confidence            7999666899999999999999999999999999     78  99999999999999999998   9996544 999999


Q ss_pred             ChHHHHHHHHhhC
Q 027872           86 HEYKLKLHLKREH   98 (217)
Q Consensus        86 ~~~~L~~H~~~~h   98 (217)
                      ....|.+|+++||
T Consensus        73 ~~~~l~~H~~~hh   85 (85)
T 2j7j_A           73 TWTLYLKHVAECH   85 (85)
T ss_dssp             SHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999865

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.73  E-value=3.7e-19  Score=137.14  Aligned_cols=85  Identities=24%  Similarity=0.477  Sum_probs=50.0

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccccc
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKA   83 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~   83 (217)
                      |++++||.|  +.|++.|.+...|..|+++|++.+||.|     ..|++.|.+...|..|+++|++++||.|.+  |++.
T Consensus        72 h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~  142 (190)
T 2i13_A           72 HTGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYAC-----PECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKS  142 (190)
T ss_dssp             HHCCCCEEC--TTTCCEESCHHHHHHHHHHHHTCCCEEC-----TTTCCEESSHHHHHHHHHHHHCCCCEECTT--TCCE
T ss_pred             cCCCCCccC--cccCCccCCHHHHHHHHHhcCCCCCCcC-----CCCCCccCCHHHHHHHHHHhCCCCCeECCC--CCcc
Confidence            344444444  2344444444444444444444444444     666666766666777777777777777766  7777


Q ss_pred             ccChHHHHHHHHhh
Q 027872           84 YIHEYKLKLHLKRE   97 (217)
Q Consensus        84 F~~~~~L~~H~~~~   97 (217)
                      |.....|..|+++|
T Consensus       143 f~~~~~L~~H~~~H  156 (190)
T 2i13_A          143 FSREDNLHTHQRTH  156 (190)
T ss_dssp             ESCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhc
Confidence            77777777777663

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=3.3e-18  Score=122.52  Aligned_cols=91  Identities=21%  Similarity=0.354  Sum_probs=82.6

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccc---cCCCCCCeecCcccc
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYG---SASSERPYACPYEGC   80 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~---~H~~ekp~~C~~~~C   80 (217)
                      .+|+++|.|  +.|++.|.....|..|+++|++.+||.|     ..|++.|.+...|..|++   .|.+++||.|.+  |
T Consensus         2 s~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C   72 (124)
T 2dlq_A            2 SSGSSGVEC--PTCHKKFLSKYYLKVHNRKHTGEKPFEC-----PKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV--C   72 (124)
T ss_dssp             CCCCSSCCC--TTTCCCCSSHHHHHHHHHHHSSCCSCBC-----TTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS--S
T ss_pred             CCCCCCCCC--CCCCCcCCCHHHHHHHHHhCCCCCCeEC-----CCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC--C
Confidence            478999999  5899999999999999999999999999     899999999999999988   468999999999  9


Q ss_pred             cccccChHHHHHHHHhhCCCCCCc
Q 027872           81 EKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        81 ~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      ++.|.....|..|+++|+ +..+.
T Consensus        73 ~~~f~~~~~l~~H~~~h~-~~~~~   95 (124)
T 2dlq_A           73 QETFRRRMELRLHMVSHT-GEMPY   95 (124)
T ss_dssp             CCEESSHHHHHHHHHHHS-SSCSE
T ss_pred             CCccCCHHHHHHHHHHcC-CCCCc
Confidence            999999999999999854 44443

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.72  E-value=1.6e-18  Score=133.61  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=43.2

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCC--CCCCcccCCCCccccc-ccC-CCCCCeec--C
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYAT--PPERITKTPKPPAGVY-GSA-SSERPYAC--P   76 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~--~~~~~~~~~~~l~~H~-~~H-~~ekp~~C--~   76 (217)
                      +|++++||.|+++.|++.|.+...|..|+++|++.+||.|     .  .|++.|.+...|..|+ +.| .+.+||.|  .
T Consensus        36 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~  110 (190)
T 1tf6_A           36 KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC-----DSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFE  110 (190)
T ss_dssp             HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEEC-----CSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSS
T ss_pred             hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeC-----CCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCC
Confidence            4555555555222455555555555555555555555555     3  4444444444444444 444 24444554  4


Q ss_pred             cccccccccChHHHHHHHHh
Q 027872           77 YEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        77 ~~~C~k~F~~~~~L~~H~~~   96 (217)
                      +  |++.|.....|..|+++
T Consensus       111 ~--C~k~f~~~~~L~~H~~~  128 (190)
T 1tf6_A          111 N--CGKAFKKHNQLKVHQFS  128 (190)
T ss_dssp             S--SCEECSSHHHHHHHHGG
T ss_pred             C--CccccCCHHHHHHHHHH
Confidence            4  55555555555555444

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=3.1e-18  Score=127.48  Aligned_cols=97  Identities=22%  Similarity=0.382  Sum_probs=74.1

Q ss_pred             ccCCCCceecCCCCC---CccccChhhHHHHHHhhcCCCCcccCCcCCCC--CCCcccCCCCcccccccCCCCCCeecCc
Q 027872            3 THSQENYHICPYPDC---GKRYAHEYKLKNHIASHHEKNAAVEVPRYATP--PERITKTPKPPAGVYGSASSERPYACPY   77 (217)
Q Consensus         3 ~Htgekp~~C~~~~C---~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~--~~~~~~~~~~l~~H~~~H~~ekp~~C~~   77 (217)
                      +|++++||.|.+..|   ++.|.+...|..|+++|++.+||.|     .+  |++.|.+...|..|+++|++++||.|.+
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C-----~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  102 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKC-----TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH  102 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCC-----CSTTCCCCCSSHHHHHHHHHHTTTCCCEECCS
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccC-----CCCCCCCcccCHHHHHHHHHHcCCCCCeeCCC
Confidence            677888888853223   4888888888888888888888887     54  8888888888888888888888888875


Q ss_pred             ccccccccChHHHHHHHHhhCCCCCCc
Q 027872           78 EGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        78 ~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .+|++.|.+...|.+|++..|.+..+.
T Consensus       103 ~~C~~~f~~~~~L~~H~~~~H~~~~~~  129 (155)
T 2gli_A          103 EGCSKAFSNASDRAKHQNRTHSNEKPY  129 (155)
T ss_dssp             TTCCCEESSSSTTHHHHHHTTCSCCCE
T ss_pred             CCCCCccCCHHHHHHHHHHhcCCCCCe
Confidence            458888888888888884446665543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.71  E-value=1.7e-19  Score=122.15  Aligned_cols=83  Identities=14%  Similarity=0.134  Sum_probs=78.2

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIH   86 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~   86 (217)
                      ++||.|  +.|++.|.+...|..|+++|++++||.|     ..|++.|.....|.+|+++|.+ +||.|..  |++.|..
T Consensus         1 ek~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C-----~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~--C~~~f~~   70 (88)
T 1llm_C            1 MKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFAC-----DICGRKFARSDERKRHRDIQHI-LPILEDK--VEELLSK   70 (88)
T ss_dssp             CCCEEC--TTTCCEESCHHHHHHHHHHHHCCCCEEC-----TTTCCEESSHHHHHHHHHHHTH-HHHHHHH--HHHHHHH
T ss_pred             CCCCcC--CCCCCccCCHHHHHHHHHHcCCCCCccC-----CCCCCccCCHHHHHHHHHHhCC-CcchHHH--HHHHHHH
Confidence            589999  5799999999999999999999999999     8999999999999999999985 8999998  9999999


Q ss_pred             hHHHHHHHHhhCC
Q 027872           87 EYKLKLHLKREHP   99 (217)
Q Consensus        87 ~~~L~~H~~~~h~   99 (217)
                      ...|..|++.+|.
T Consensus        71 ~~~L~~H~~~~h~   83 (88)
T 1llm_C           71 NYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHH
Confidence            9999999998663

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.70  E-value=3.8e-18  Score=131.47  Aligned_cols=96  Identities=25%  Similarity=0.330  Sum_probs=83.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHH-Hhh-cCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHI-ASH-HEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYE   78 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~-~~H-~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~   78 (217)
                      +++|++++||.|.++.|++.|.+...|..|+ +.| .+.++|.|.   +..|++.|.+...|..|+++|++++||.|++.
T Consensus        64 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~---~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~  140 (190)
T 1tf6_A           64 SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCH---FENCGKAFKKHNQLKVHQFSHTQQLPYECPHE  140 (190)
T ss_dssp             HTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEEC---SSSSCEECSSHHHHHHHHGGGSSSCSSBCCSS
T ss_pred             HHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCC---CCCCccccCCHHHHHHHHHHhCCCCCccCCCC
Confidence            4689999999995337999999999999999 677 478889872   25699999999999999999999999999644


Q ss_pred             cccccccChHHHHHHHHhhCC
Q 027872           79 GCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        79 ~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      +|++.|.+.+.|.+|+++|++
T Consensus       141 ~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          141 GCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SCCCBCSSHHHHHHHHTSSCS
T ss_pred             CCCchhcCHHHHHHHHHHhCC
Confidence            599999999999999998444

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.68  E-value=2.3e-18  Score=125.87  Aligned_cols=78  Identities=17%  Similarity=0.112  Sum_probs=72.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCC------Cee
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSER------PYA   74 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ek------p~~   74 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|     ..|++.|.+...|..|+++|.+++      +|+
T Consensus        42 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C-----~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~  114 (133)
T 2lt7_A           42 FNIHSWEKKYPC--RYCEKVFPLAEYRTKHEIHHTGERRYQC-----LACGKSFINYQFMSSHIKSVHSQDPSGDSKLYR  114 (133)
T ss_dssp             HHHHHCCSCEEC--SSSSCEESSHHHHHHHHHHHHTCCCEEE-----SSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEE
T ss_pred             HHHcCCCCCeeC--CccCeecccccchhhhccccCCCccccC-----CCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCee
Confidence            468999999999  5799999999999999999999999999     999999999999999999998764      589


Q ss_pred             cCcccccccccCh
Q 027872           75 CPYEGCEKAYIHE   87 (217)
Q Consensus        75 C~~~~C~k~F~~~   87 (217)
                      |.+  |++.|.+.
T Consensus       115 C~~--C~k~~~~~  125 (133)
T 2lt7_A          115 LHP--CRSLQIRQ  125 (133)
T ss_dssp             ECC--CCSSCCCC
T ss_pred             cCC--CCchhhhc
Confidence            988  99999865

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=7.1e-17  Score=105.04  Aligned_cols=63  Identities=32%  Similarity=0.558  Sum_probs=57.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGC   80 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C   80 (217)
                      .++|++++||.|  +.|++.|.+...|..|+++|                                 ++++||+|.+  |
T Consensus         6 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~h---------------------------------~~~~~~~C~~--C   48 (72)
T 1x6e_A            6 SGIHSGEKPYGC--VECGKAFSRSSILVQHQRVH---------------------------------TGEKPYKCLE--C   48 (72)
T ss_dssp             CCTTTTCCCEEC--SSSCCEESSHHHHHHHHHGG---------------------------------GCSCCEECSS--S
T ss_pred             CcccCCCCCccC--CCCCCccCCHHHHHHHHHhc---------------------------------CCCCCeECCC--C
Confidence            478999999999  57999999999999999999                                 4678999998  9


Q ss_pred             cccccChHHHHHHHHhhCCC
Q 027872           81 EKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        81 ~k~F~~~~~L~~H~~~~h~~  100 (217)
                      ++.|.+...|.+|+++|+.+
T Consensus        49 ~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           49 GKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCEESSHHHHHHHHHHHHSS
T ss_pred             CcccCCHHHHHHHHHhcCCC
Confidence            99999999999999986554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.68  E-value=8.3e-17  Score=108.37  Aligned_cols=64  Identities=22%  Similarity=0.578  Sum_probs=57.4

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      .++.+.++|.|  ++|++.|.+...|..|+++|                                 ++++||.|.+  |+
T Consensus        21 ~~~~~~~~h~C--~~Cgk~F~~~~~L~~H~~~H---------------------------------~~~k~~~C~~--C~   63 (85)
T 2lv2_A           21 GLSASAECHLC--PVCGESFASKGAQERHLRLL---------------------------------HAAQVFPCKY--CP   63 (85)
T ss_dssp             SSCCCCTTEEC--TTSCCEESSHHHHHHHHHTT---------------------------------SCSSSEECTT--SS
T ss_pred             CCCCCCCCEEC--CCCCCCcCcHHHHhhhhhhc---------------------------------cCCCccCCCC--CC
Confidence            46778899999  58999999999999999999                                 5789999998  99


Q ss_pred             ccccChHHHHHHHHhhCCCCC
Q 027872           82 KAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      ++|.+...|.+|+++.|+++.
T Consensus        64 k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           64 ATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CEESSHHHHHHHHHTTCTTCC
T ss_pred             CEeCCHHHHHHhCcccCcCCC
Confidence            999999999999987787653

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=1.3e-16  Score=105.12  Aligned_cols=67  Identities=27%  Similarity=0.502  Sum_probs=59.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHH-hhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCC-CCCeecCcc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIA-SHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASS-ERPYACPYE   78 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~-~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~-ekp~~C~~~   78 (217)
                      |++|++++||.|  +.|++.|.+...|..|++ .|                                 ++ .+||.|.+ 
T Consensus         7 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~~h---------------------------------~~~~~~~~C~~-   50 (77)
T 2ct1_A            7 GRTHSGEKPYEC--YICHARFTQSGTMKMHILQKH---------------------------------TENVAKFHCPH-   50 (77)
T ss_dssp             CCCCSCCCSEEC--TTTCCEESCHHHHHHHHHHHS---------------------------------SSSCSSEECSS-
T ss_pred             ccccCCCCCeEC--CCcCchhCCHHHHHHHHHHhc---------------------------------CCCCCccCCCC-
Confidence            689999999999  579999999999999998 45                                 34 48999998 


Q ss_pred             cccccccChHHHHHHHHhhCCCCCCc
Q 027872           79 GCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        79 ~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                       |++.|.+...|.+|++++|+...|.
T Consensus        51 -C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A           51 -CDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             -SSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             -CCCccCCHHHHHHHHHHhCCCCCCC
Confidence             9999999999999999999876653

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=7.7e-17  Score=102.92  Aligned_cols=63  Identities=25%  Similarity=0.528  Sum_probs=56.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHh-hcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIAS-HHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEG   79 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~-H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~   79 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++ |.                                ++++||.|.+  
T Consensus         2 ~~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~~H~--------------------------------~~~~~~~C~~--   45 (66)
T 2drp_A            2 EFTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHK--------------------------------RNVKVYPCPF--   45 (66)
T ss_dssp             -CEEEETTEEEC--TTTCCEESSHHHHHHHHHHHSS--------------------------------SSCCCEECTT--
T ss_pred             ccccCCCcceEC--CCCcchhCCHHHHHHHHHHHcC--------------------------------CCCcCeECCC--
Confidence            579999999999  5799999999999999998 41                                4779999998  


Q ss_pred             ccccccChHHHHHHHHhhCC
Q 027872           80 CEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        80 C~k~F~~~~~L~~H~~~~h~   99 (217)
                      |++.|.+.+.|.+|++++|.
T Consensus        46 C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           46 CFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TCCEESCHHHHHHHHHHHTC
T ss_pred             CCCccCCHHHHHHHHHHHcC
Confidence            99999999999999999875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=1.6e-16  Score=104.94  Aligned_cols=69  Identities=20%  Similarity=0.381  Sum_probs=60.7

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEK   82 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k   82 (217)
                      +|++++||+|  ++|++.|.+...|..|+++|++.                              .+++||.|.+  |++
T Consensus         1 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~------------------------------~~~~~~~C~~--C~k   46 (78)
T 2d9h_A            1 GSSGSSGLQC--EICGFTCRQKASLNWHQRKHAET------------------------------VAALRFPCEF--CGK   46 (78)
T ss_dssp             CCCSCCCEEC--SSSCCEESSHHHHHHHHHHHHHH------------------------------TTTCCEECTT--TCC
T ss_pred             CCCCCcCeEC--CCCCCeeCCHHHHHHHHHHhhcc------------------------------CCCcccCCCC--CCc
Confidence            5999999999  57999999999999999999631                              1478999998  999


Q ss_pred             cccChHHHHHHHHhhCCCCCCcc
Q 027872           83 AYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        83 ~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      .|.+...|.+|++.+|.+..+..
T Consensus        47 ~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A           47 RFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             EESSHHHHHHHHHHTSTTTSSCC
T ss_pred             hhCCHHHHHHHHHHhCCCCCCCc
Confidence            99999999999988898877554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.5e-17  Score=108.58  Aligned_cols=63  Identities=32%  Similarity=0.642  Sum_probs=47.7

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      +.+.+++||.|  +.|++.|.+...|..|+++|+                                 +++||.|.+  |+
T Consensus        11 ~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~---------------------------------~~~~~~C~~--C~   53 (77)
T 2cot_A           11 WQQRERRRYKC--DECGKSFSHSSDLSKHRRTHT---------------------------------GEKPYKCDE--CG   53 (77)
T ss_dssp             SCCCCSCSSBC--SSSCCBCSCHHHHHHHHTTTC---------------------------------CSCSEECSS--SC
T ss_pred             CcCCCCCCEEC--CCCCcccCCHHHHHHHHHHcC---------------------------------CCcCeeCCC--CC
Confidence            45788999999  579999999999999999995                                 456666666  66


Q ss_pred             ccccChHHHHHHHHhhCCCCC
Q 027872           82 KAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      +.|.+...|.+|+++ |.+..
T Consensus        54 ~~f~~~~~L~~H~~~-H~~~~   73 (77)
T 2cot_A           54 KAFIQRSHLIGHHRV-HTGSG   73 (77)
T ss_dssp             CEESSHHHHHHHGGG-SCCCC
T ss_pred             CccCCHHHHHHHHHH-hCCCC
Confidence            666666666666665 44443

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.8e-17  Score=109.57  Aligned_cols=67  Identities=21%  Similarity=0.413  Sum_probs=53.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGC   80 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C   80 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|+...                             ..++||.|.+  |
T Consensus         7 ~~~H~~~k~~~C--~~C~~~f~~~~~l~~H~~~~~~~~-----------------------------~~~~~~~C~~--C   53 (86)
T 1x6h_A            7 GRTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDPN-----------------------------FVPAAFVCSK--C   53 (86)
T ss_dssp             STTCCCCCCEEC--SSSSCEESSHHHHHHHHHHTTCSS-----------------------------CCCCCEECSS--S
T ss_pred             cceecCCCCCcC--CCCCCccCCHHHHHHHHHHhcCCc-----------------------------CCCcceECCC--C
Confidence            689999999999  579999999999999999885320                             1236788877  8


Q ss_pred             cccccChHHHHHHHHhhCCC
Q 027872           81 EKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        81 ~k~F~~~~~L~~H~~~~h~~  100 (217)
                      ++.|.+...|..|+++|+..
T Consensus        54 ~~~f~~~~~L~~H~~~h~~~   73 (86)
T 1x6h_A           54 GKTFTRRNTMARHADNCAGP   73 (86)
T ss_dssp             CCEESCHHHHHHHHHHCCCC
T ss_pred             CChhCCHHHHHHHHHHccCC
Confidence            88888888888888774433

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.64  E-value=9.7e-17  Score=119.50  Aligned_cols=99  Identities=18%  Similarity=0.319  Sum_probs=83.3

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHh-hcCCCC---cccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIAS-HHEKNA---AVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYE   78 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~-H~~~kp---~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~   78 (217)
                      ++...++|.|  ..|++.|.+...|..|+++ |.+.++   +.|.+..|..|++.|.+...|..|+++|++++||.|.+.
T Consensus        19 ~~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~   96 (155)
T 2rpc_A           19 IDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFP   96 (155)
T ss_dssp             CCTTCCSSSC--CCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCT
T ss_pred             echhhccccc--ccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcC
Confidence            3556788999  5899999999999999998 777655   334444559999999999999999999999999999755


Q ss_pred             cccccccChHHHHHHHHhhCCCCCCc
Q 027872           79 GCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        79 ~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|++.|.+...|.+|+++ |.+..+.
T Consensus        97 ~C~~~f~~~~~L~~H~~~-h~~~~~~  121 (155)
T 2rpc_A           97 GCGKIFARSENLKIHKRT-HTGEKPF  121 (155)
T ss_dssp             TTCCEESCHHHHHHHHTT-TCSSCSB
T ss_pred             CCCCccCCHHHHHHHHHh-hCCCCCc
Confidence            699999999999999987 5555543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=8.1e-17  Score=112.15  Aligned_cols=68  Identities=13%  Similarity=0.072  Sum_probs=48.8

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHH-hh---cCCCCcccCCcCCCCCCCcccCCCCcccc-cccCCCCCCeecCc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIA-SH---HEKNAAVEVPRYATPPERITKTPKPPAGV-YGSASSERPYACPY   77 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~-~H---~~~kp~~c~~~~~~~~~~~~~~~~~l~~H-~~~H~~ekp~~C~~   77 (217)
                      .-+|++||.|  +.|++.|.+++.|..|++ +|   ++++||.|     ..|++.|.....|.+| +++|++++||.|.+
T Consensus        12 ~~~gekpy~C--~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C-----~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~   84 (102)
T 2ghf_A           12 NKKVEGGYEC--KYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVC-----VECNFLTKRYDALSEHNLKYHPGEENFKLTM   84 (102)
T ss_dssp             CCCCCSSEEC--SSCSCEESCHHHHHHHHHHHCSSCCCSCCEEE-----TTTTEEESSTHHHHTHHHHTSTTCCCEEEEE
T ss_pred             cCCCCcCcCC--CCCCCccCCHHHHHHHHHhhCCCCCCCCCcCC-----CCCCcccCCHHHHHHHHHHhcCCCCCeeCCc
Confidence            3578999999  579999999999999998 58   44556655     5556666555556666 55566666665554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=6.5e-16  Score=99.83  Aligned_cols=61  Identities=25%  Similarity=0.508  Sum_probs=55.9

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEK   82 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k   82 (217)
                      +|++++||.|  +.|++.|.+...|..|+++|                                 ++++||.|.+  |++
T Consensus         3 s~~~~~~~~C--~~C~k~f~~~~~L~~H~~~H---------------------------------~~~~~~~C~~--C~~   45 (70)
T 1x5w_A            3 SGSSGHPEKC--SECSYSCSSKAALRIHERIH---------------------------------CTDRPFKCNY--CSF   45 (70)
T ss_dssp             SCCCCCSEEC--SSSSCEESSHHHHHHHHGGG---------------------------------CCSCSEECSS--SSC
T ss_pred             CCCCCCCeEC--CCCCcccCCHHHHHHHHHHc---------------------------------CCCCCEeCCC--CCC
Confidence            6899999999  57999999999999999998                                 5678999998  999


Q ss_pred             cccChHHHHHHHHhhCCC
Q 027872           83 AYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        83 ~F~~~~~L~~H~~~~h~~  100 (217)
                      .|.+...|.+|+++||..
T Consensus        46 ~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A           46 DTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             EESSHHHHHHHHHHHHSS
T ss_pred             ccCCHHHHHHHHHHHhCC
Confidence            999999999999997654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.60  E-value=9.6e-16  Score=94.78  Aligned_cols=57  Identities=35%  Similarity=0.765  Sum_probs=48.6

Q ss_pred             CCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccccccc
Q 027872            6 QENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYI   85 (217)
Q Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~   85 (217)
                      |++||.|  +.|++.|.+...|..|+++|+                                 +++||.|.+  |++.|.
T Consensus         1 g~~~~~C--~~C~~~f~~~~~l~~H~~~h~---------------------------------~~~~~~C~~--C~~~f~   43 (57)
T 3uk3_C            1 GSSSREC--SYCGKFFRSNYYLNIHLRTHT---------------------------------GEKPYKCEF--CEYAAA   43 (57)
T ss_dssp             ----CBC--TTTCCBCSCHHHHHHHHHHHH---------------------------------CCCCEECSS--SSCEES
T ss_pred             CCCCccC--CCCcchhCChHHHHHHHHHcC---------------------------------CCCCcCCCC--CcchhC
Confidence            5799999  579999999999999999994                                 678899998  999999


Q ss_pred             ChHHHHHHHHhhCC
Q 027872           86 HEYKLKLHLKREHP   99 (217)
Q Consensus        86 ~~~~L~~H~~~~h~   99 (217)
                      +...|.+|+++||.
T Consensus        44 ~~~~l~~H~~~hh~   57 (57)
T 3uk3_C           44 QKTSLRYHLERHHK   57 (57)
T ss_dssp             SHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHhcC
Confidence            99999999999873

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=7.1e-17  Score=111.56  Aligned_cols=71  Identities=18%  Similarity=0.199  Sum_probs=45.1

Q ss_pred             ChhhHHHHHHhhcCCCCcccCCcCCCCCCCccc-CCCCcccccccCCC-CCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           23 HEYKLKNHIASHHEKNAAVEVPRYATPPERITK-TPKPPAGVYGSASS-ERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        23 ~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~-~~~~l~~H~~~H~~-ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      ....+..|+++|++++||.|     .+|++.|. +...|.+|+++|++ ++||.|.+  |++.|.+...|.+|+++||..
T Consensus         8 ~~~~~~~h~~~h~~~~~~~C-----~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A            8 PGGPEEQWQRAIHERGEAVC-----PTCNVVTRKTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             CCCSCSHHHHTTTTTSCCCC-----TTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSS--SCCCCSCHHHHHHHHHHHSCS
T ss_pred             CCCcHHHHHHHhccCCCcCC-----CCCCCChhhhHHHHHHHHHHHcCCCCCEECCC--CCCccCCHHHHHHHHHHHcCC
Confidence            33334444444444444444     34444444 44444444444456 78999999  999999999999999987654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.59  E-value=2.3e-15  Score=98.30  Aligned_cols=62  Identities=23%  Similarity=0.491  Sum_probs=54.8

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEK   82 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k   82 (217)
                      .++++++|+|  +.|++.|.+...|..|+++|                                 ++++||+|.+  |++
T Consensus        11 ~~~~~~~~~C--~~C~k~f~~~~~l~~H~~~H---------------------------------~~~~~~~C~~--C~k   53 (74)
T 2lce_A           11 MTHSDKPYKC--DRCQASFRYKGNLASHKTVH---------------------------------TGEKPYRCNI--CGA   53 (74)
T ss_dssp             CCCCCCSBCC--TTSSCCBSCHHHHHHHHHHH---------------------------------CCCCSEECTT--TCC
T ss_pred             ccCCCCCeEC--CCCCceeCCHHHHHHHHHHc---------------------------------CCCCCEECCC--CCc
Confidence            5789999999  57999999999999999999                                 4678899988  999


Q ss_pred             cccChHHHHHHHHhhCCCCC
Q 027872           83 AYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        83 ~F~~~~~L~~H~~~~h~~~~  102 (217)
                      .|.+...|.+|+++| .+..
T Consensus        54 ~f~~~~~L~~H~~~H-~~~k   72 (74)
T 2lce_A           54 QFNRPANLKTHTRIH-SGEK   72 (74)
T ss_dssp             EESCHHHHHHHHHHH-CCSC
T ss_pred             hhCCHHHHHHHHHhc-CCCC
Confidence            999999999999884 4443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.8e-15  Score=98.45  Aligned_cols=61  Identities=21%  Similarity=0.578  Sum_probs=54.9

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      .+|++++||.|.|..|++.|.+...|..|+++|+                                 +++||.|.+  |+
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~---------------------------------~~~~~~C~~--C~   56 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT---------------------------------GQKPFQCRI--CM   56 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHH---------------------------------CCCCEECTT--TC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhC---------------------------------CCCCeECCC--CC
Confidence            4789999999964479999999999999999994                                 678899998  99


Q ss_pred             ccccChHHHHHHHHhh
Q 027872           82 KAYIHEYKLKLHLKRE   97 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~   97 (217)
                      +.|.+...|.+|+++|
T Consensus        57 ~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           57 RNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CEESCHHHHHHHHTTC
T ss_pred             chhCCHHHHHHHHHhc
Confidence            9999999999999873

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=1.8e-15  Score=104.27  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=67.9

Q ss_pred             CccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcc-cCCCCcccccccCCCCCCeecCcccccccccChHHHHHH-HH
Q 027872           18 GKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERIT-KTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLH-LK   95 (217)
Q Consensus        18 ~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~-~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H-~~   95 (217)
                      ...|.....|..|++.|++++||.|     ..|++.| .+...|..|+++| +++||.|.+  |++.|.+.+.|+.| ++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C-----~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~--Cgk~F~~~~~L~~H~~~   84 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSC-----PTCQAVGRKTIEGLKKHMENC-KQEMFTCHH--CGKQLRSLAGMKYHVMA   84 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEEC-----TTTCSCEESSHHHHHHHHHHH-CCCCCCCSS--SCCCCSSHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCC-----CCCCCCcccCHHHHHHHHHHH-CCCCeECCC--CCCeeCCHHHHHHHhHH
Confidence            4678888999999999999999999     8999999 8999999999999 999999999  99999999999999 66


Q ss_pred             hhCCCC
Q 027872           96 REHPGH  101 (217)
Q Consensus        96 ~~h~~~  101 (217)
                      + |++.
T Consensus        85 ~-H~~~   89 (96)
T 2ctd_A           85 N-HNSL   89 (96)
T ss_dssp             H-TCCC
T ss_pred             h-cCCC
Confidence            5 6654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2.8e-16  Score=108.54  Aligned_cols=69  Identities=14%  Similarity=0.158  Sum_probs=64.4

Q ss_pred             CcccCCCCceecCCCCCCcccc-ChhhHHHHHHhhcC-CCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecC
Q 027872            1 MKTHSQENYHICPYPDCGKRYA-HEYKLKNHIASHHE-KNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACP   76 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~-~~~~L~~H~~~H~~-~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~   76 (217)
                      +++|++++||.|  ++|++.|. +...|+.|+++|++ ++||.|     .+|++.|.+...|.+|+++|++++|+...
T Consensus        16 ~~~h~~~~~~~C--~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C-----~~C~k~F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           16 QRAIHERGEAVC--PTCNVVTRKTLVGLKKHMEVCQKLQDALKC-----QHCRKQFKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             HHTTTTTSCCCC--TTTCCCCSSCSHHHHHHHHHHHHHHHHHSC-----SSSCCCCSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             HHHhccCCCcCC--CCCCCChhhhHHHHHHHHHHHcCCCCCEEC-----CCCCCccCCHHHHHHHHHHHcCCCCCCCC
Confidence            468999999999  57999999 99999999999999 999999     89999999999999999999999997653

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=1.5e-14  Score=90.30  Aligned_cols=58  Identities=31%  Similarity=0.721  Sum_probs=51.4

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccCh
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHE   87 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~   87 (217)
                      |||.|  +.|++.|.+...|..|+++|                                 ++++||.|.+  |++.|.+.
T Consensus         1 k~~~C--~~C~~~f~~~~~l~~H~~~h---------------------------------~~~~~~~C~~--C~~~f~~~   43 (60)
T 2adr_A            1 RSFVC--EVCTRAFARQEHLKRHYRSH---------------------------------TNEKPYPCGL--CNRAFTRR   43 (60)
T ss_dssp             CCBCC--TTTCCCBSCHHHHHHHHHTT---------------------------------TSSCSEECTT--TCCEESSH
T ss_pred             CcCcC--CCCccccCCHHHHHHHHHHh---------------------------------CCCCCccCCC--CCCccCCH
Confidence            68999  57999999999999999998                                 5678999998  99999999


Q ss_pred             HHHHHHHHhhCCCCC
Q 027872           88 YKLKLHLKREHPGHM  102 (217)
Q Consensus        88 ~~L~~H~~~~h~~~~  102 (217)
                      ..|.+|++..|++..
T Consensus        44 ~~l~~H~~~~H~~~~   58 (60)
T 2adr_A           44 DLLIRHAQKIHSGNL   58 (60)
T ss_dssp             HHHHHHHTTTSCCSS
T ss_pred             HHHHHHHHHHcCCcC
Confidence            999999866677643

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.50  E-value=2.7e-14  Score=88.09  Aligned_cols=55  Identities=35%  Similarity=0.719  Sum_probs=49.5

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChH
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEY   88 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~   88 (217)
                      ||.|  +.|++.|.+...|..|+++|                                 ++++||.|.+  |++.|.+..
T Consensus         1 p~~C--~~C~~~f~~~~~l~~H~~~h---------------------------------~~~~~~~C~~--C~~~f~~~~   43 (57)
T 1bbo_A            1 KYIC--EECGIRXKKPSMLKKHIRTH---------------------------------TDVRPYHCTY--CNFSFKTKG   43 (57)
T ss_dssp             CCBC--TTTCCBCSSHHHHHHHHHHT---------------------------------SSCCCEECSS--SSCEESSHH
T ss_pred             CCcC--CCCcCcCCCHHHHHHHHHhc---------------------------------CCCCCccCCC--CCchhcCHH
Confidence            7999  57999999999999999998                                 5678999998  999999999


Q ss_pred             HHHHHHHhhCCC
Q 027872           89 KLKLHLKREHPG  100 (217)
Q Consensus        89 ~L~~H~~~~h~~  100 (217)
                      .|.+|+++|+.+
T Consensus        44 ~l~~H~~~h~~~   55 (57)
T 1bbo_A           44 NLTKHMKSKAHS   55 (57)
T ss_dssp             HHHHHHHSSSSC
T ss_pred             HHHHHHHHhccc
Confidence            999999985543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.50  E-value=6.1e-16  Score=111.80  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=62.0

Q ss_pred             cChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           22 AHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        22 ~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      .....|..|+ .|++++||.|     ..|++.|.+...|.+|+++|  ++||.|.+  |++.|.+.+.|.+|+++||+.
T Consensus        58 ~~~~~l~~h~-~h~~~~~~~C-----~~C~k~f~~~~~l~~H~~~H--~~~~~C~~--C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           58 DESSYLYRLL-ASKAISQFVC-----PLCLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTHHHHHHHH-HHHHHCSEEC-----TTTCCEESSHHHHHHHHHHT--CCCCBCTT--TCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHH-HhCCCCCeEC-----CCCCcccCCHhHHHHHHHHC--CCCCCCCC--CCcccCCHHHHHHHHHHHCCc
Confidence            4566676676 6999999999     99999999999999999999  89999999  999999999999999996654

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.49  E-value=4e-14  Score=91.72  Aligned_cols=62  Identities=34%  Similarity=0.777  Sum_probs=52.6

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCccccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCE   81 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~   81 (217)
                      ..++..++|.|.++.|++.|.....|..|+++|                                 ++++||.|.+..|+
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H---------------------------------~~~~~~~C~~~~C~   56 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH---------------------------------TGEKPFSCSWKGCE   56 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSHHHHHHHHHHH---------------------------------SSSCSEECCCTTCC
T ss_pred             CCccccCceeCCCCCCccccCCHHHHHHHHHhc---------------------------------CCCCCccCCCCCCC
Confidence            356778999996444999999999999999999                                 46788888533499


Q ss_pred             ccccChHHHHHHHHh
Q 027872           82 KAYIHEYKLKLHLKR   96 (217)
Q Consensus        82 k~F~~~~~L~~H~~~   96 (217)
                      +.|.+...|.+|+++
T Consensus        57 k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           57 RRFARSDELSRHRRT   71 (72)
T ss_dssp             CEESSHHHHHHHTTT
T ss_pred             cccCCHHHHHhHhhc
Confidence            999999999999876

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=3.6e-15  Score=96.59  Aligned_cols=64  Identities=13%  Similarity=0.169  Sum_probs=59.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGC   80 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C   80 (217)
                      |++|++++||.|  +.|++.|.+...|..       .+||.|     ..|++.|.+...|..|+++|++++||.|.+  |
T Consensus        10 ~~~h~~~~~~~C--~~C~k~f~~~~~l~~-------~~~~~C-----~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~--C   73 (73)
T 2ctu_A           10 QKIHLGDRSQKC--SKCGIIFIRRSTLSR-------RKTPMC-----EKCRKDSCQEAALNKDEGNESGKKTSGPSS--G   73 (73)
T ss_dssp             CCCCCCCSEEEC--SSSCCEEECCCCCCC-------SSSCCC-----HHHHHTCSCCCSSCCCSSCCCCCCCSSCCC--C
T ss_pred             HHHhCCCCCeeC--CcccchhCCHHHhCc-------CCCCCC-----CCCChhhcCHHHHHHHHHhhcCCCCCCCCC--C
Confidence            578999999999  579999999998876       789999     889999999999999999999999999987  7

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.47  E-value=4.6e-15  Score=103.35  Aligned_cols=68  Identities=15%  Similarity=0.111  Sum_probs=64.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeec
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYAC   75 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C   75 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|     ..|++.|.+...|.+|+++|++++||.+
T Consensus        37 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           37 ERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKC-----QECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHCCSCCCBC--SSSCCBCSCHHHHHHHGGGSCCCCTTSC-----SSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHcCCCCCcCC--CCccchhCCHHHHHHHHHHhCCCCCeEC-----CCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            357999999999  5799999999999999999999999999     8999999999999999999999999976

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=4.9e-15  Score=102.04  Aligned_cols=66  Identities=11%  Similarity=0.018  Sum_probs=59.6

Q ss_pred             cccCCCCceecCCCCCCccc-cChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccc-cccCCCCCCeec
Q 027872            2 KTHSQENYHICPYPDCGKRY-AHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGV-YGSASSERPYAC   75 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F-~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H-~~~H~~ekp~~C   75 (217)
                      ++|++++||.|  +.|++.| .+...|+.|+++| +++||.|     ..|++.|.....|..| +++|+++..|.+
T Consensus        27 ~~~~~~~~~~C--~~C~k~F~~~~~~L~~H~~~h-~~k~~~C-----~~Cgk~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           27 LEIVDKGSVSC--PTCQAVGRKTIEGLKKHMENC-KQEMFTC-----HHCGKQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             HHHHHTSCEEC--TTTCSCEESSHHHHHHHHHHH-CCCCCCC-----SSSCCCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             HHhcCCCCcCC--CCCCCCcccCHHHHHHHHHHH-CCCCeEC-----CCCCCeeCCHHHHHHHhHHhcCCCCCCCC
Confidence            46788999999  5799999 9999999999999 9999999     9999999999999999 999987655544

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=5.9e-15  Score=98.72  Aligned_cols=41  Identities=29%  Similarity=0.625  Sum_probs=37.5

Q ss_pred             CcccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           59 PPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        59 ~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      .|.+|+++|++++||.|.+  |++.|.+...|.+|++++|...
T Consensus         2 s~~~H~~~H~~~k~~~C~~--C~~~f~~~~~l~~H~~~~~~~~   42 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPN   42 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSS--SSCEESSHHHHHHHHHHTTCSS
T ss_pred             CcccccceecCCCCCcCCC--CCCccCCHHHHHHHHHHhcCCc
Confidence            5788999999999999999  9999999999999999877764

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.41  E-value=1.3e-14  Score=97.84  Aligned_cols=65  Identities=12%  Similarity=0.175  Sum_probs=58.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERP   72 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp   72 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++.+||.|     ..|++.|.+...|..|+++|+++++
T Consensus        26 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           26 IRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFAC-----DICGRKFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             HHHHHCCCCEEC--TTTCCEESCHHHHHHHHHHHHCCCCEEC-----TTTCCEESSHHHHHHHHGGGGC---
T ss_pred             HHHhCCCCCccC--CCCCcccCCHHHHHHHHHHcCCCCCccC-----CCCCchhCCHHHHHHHHHHhcccCC
Confidence            357899999999  5799999999999999999999999999     8999999999999999999999864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.41  E-value=5.1e-14  Score=96.13  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=62.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCee
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYA   74 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~   74 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|     .+|++.|.+...|..|+++|+++++..
T Consensus        28 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           28 MRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKC-----QICPYASRNSSQLTVHLRSHTGDSGPS   94 (96)
T ss_dssp             GGGCCCCCSEEC--SSSCCEESSHHHHHHHHHHSCCCCCEEC-----SSSSCEESSHHHHHHHHTTCCSCCCCC
T ss_pred             HHhcCCCCCEeC--CCCCCccCCHHHHHHHHHHhCCCCCccC-----CCCCCccCCHHHHHHHHHHhcCCCCCC
Confidence            478999999999  5799999999999999999999999999     899999999999999999999988654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=7.8e-14  Score=91.58  Aligned_cols=41  Identities=24%  Similarity=0.431  Sum_probs=33.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      ++...+.+++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         8 ~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~-h~~~~~~~   48 (77)
T 2cot_A            8 RSEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRT-HTGEKPYK   48 (77)
T ss_dssp             CCCSCCCCSCSSBCSS--SCCBCSCHHHHHHHHTT-TCCSCSEE
T ss_pred             CCcCcCCCCCCEECCC--CCcccCCHHHHHHHHHH-cCCCcCee
Confidence            3445668899999999  99999999999999987 65555543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.37  E-value=1.1e-13  Score=93.06  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=58.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSAS   68 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~   68 (217)
                      +++|++++||.|.|+.|++.|.+...|..|+++|++++||.|     ..|++.|.....|..|+++|+
T Consensus        27 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           27 LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC-----QKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             HTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEEC-----SSSSCEESSHHHHHHHGGGGC
T ss_pred             HHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccC-----CCCCcccCCHHHHHHHHHhhC
Confidence            468999999999654799999999999999999999999999     899999999999999999984

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.37  E-value=6.2e-14  Score=96.35  Aligned_cols=64  Identities=19%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASS   69 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~   69 (217)
                      +++|++++||.|.|+.|++.|.+...|..|+++|++++||.|     ..|++.|.+...|..|+++|++
T Consensus        37 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           37 LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC-----GVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             HHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBC-----SSSCCBCSSHHHHHHHHHHHCC
T ss_pred             HHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeEC-----CCCcCccCCHHHHHHHHHHhCC
Confidence            357999999999655799999999999999999999999999     8999999999999999999974

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.35  E-value=7.7e-13  Score=77.98  Aligned_cols=40  Identities=20%  Similarity=0.354  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ely_A            4 GSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCSBCC--SSSCCCBSSTTHHHHHHHHHSCCSSCSC
T ss_pred             CCCCCCCCCccc--CccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999966555554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=8.7e-13  Score=77.64  Aligned_cols=40  Identities=23%  Similarity=0.411  Sum_probs=35.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+.+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emm_A            4 GSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CSCSSCCCSEEC--SSSCCEESSHHHHHHHHHHHSCCCTTSS
T ss_pred             cCCcCCCCCeeC--CCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999976655555

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=7.4e-13  Score=78.05  Aligned_cols=40  Identities=18%  Similarity=0.345  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emf_A            4 GSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGP   43 (46)
T ss_dssp             CSSSSSSCCEEC--SSSCCEESCHHHHHHHGGGTSCSSCSCC
T ss_pred             ccccCCCCCeEC--CCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999966555555

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=76.26  Aligned_cols=40  Identities=23%  Similarity=0.285  Sum_probs=35.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+.+.|..|+++|++++||.|
T Consensus         2 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (44)
T 2emx_A            2 SSGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGP   41 (44)
T ss_dssp             CCCCSSCCCEEC--SSSSCEESSHHHHHHHHHHHTSSCSCSC
T ss_pred             CCCcCCCcCccC--CCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999976665555

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.34  E-value=9.9e-13  Score=75.86  Aligned_cols=40  Identities=25%  Similarity=0.442  Sum_probs=36.4

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         2 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            2 SSGSSGENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CSSSSSCCSEEC--SSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCccC--CCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=9.8e-13  Score=77.47  Aligned_cols=40  Identities=25%  Similarity=0.403  Sum_probs=35.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+.+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytk_A            4 GSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSSCSEEC--SSSCCEESSHHHHHHHHHHHSSSSCSSC
T ss_pred             cccCCCCCCEeC--CcCCCccCCHHHHHHHHHHHCCCCCCCC
Confidence            689999999999  5799999999999999999976555555

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=8.8e-13  Score=77.69  Aligned_cols=40  Identities=18%  Similarity=0.348  Sum_probs=34.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytn_A            4 GSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSCCSSCBC--TTTCCBCSSHHHHHHHGGGTSCCCCCSC
T ss_pred             CcCCCCCcCeEC--CCCCCeeCCHHHHHHHhhhcCCCCCCCC
Confidence            689999999999  5799999999999999999965555554

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1e-12  Score=77.36  Aligned_cols=40  Identities=25%  Similarity=0.372  Sum_probs=35.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eml_A            4 GSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGP   43 (46)
T ss_dssp             CCCCSSCCSEEC--SSSCCEESSHHHHHHHHGGGSSCCCSCS
T ss_pred             cCCcCCCCCeeC--CCcCCccCCHHHHHHHHHHhcCCCCCCC
Confidence            689999999999  5799999999999999999976555555

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.34  E-value=1.1e-12  Score=77.25  Aligned_cols=40  Identities=18%  Similarity=0.285  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2el6_A            4 GSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMHTREKPSGP   43 (46)
T ss_dssp             CCSSCCCCSEEC--SSSSCEESSHHHHHHHHGGGCCSSCCSC
T ss_pred             CCCCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999966555554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1e-12  Score=77.34  Aligned_cols=40  Identities=25%  Similarity=0.497  Sum_probs=35.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emy_A            4 GSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGP   43 (46)
T ss_dssp             CCCCCSSCCEEC--SSSCCEESSHHHHHHHHHHHTTSCCSCS
T ss_pred             CCCCCCCcCcCC--CCCCcccCcHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999976555555

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.34  E-value=9.8e-13  Score=77.52  Aligned_cols=40  Identities=20%  Similarity=0.364  Sum_probs=35.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emk_A            4 GSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSSCSCBC--SSSCCBCSCHHHHHHHHHHHSSCCCSSC
T ss_pred             CCccCCCCceEC--CCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999976655555

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9e-13  Score=77.64  Aligned_cols=40  Identities=23%  Similarity=0.375  Sum_probs=34.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+.+.|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ene_A            4 GSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGP   43 (46)
T ss_dssp             CSSCCCSSSEEC--SSSCCEESSHHHHHHHHTTTCCCCCCSC
T ss_pred             ccCCCCCCCeEC--CCCCchhCChHHHHHHHhhcCCCCCCCC
Confidence            689999999999  5799999999999999999965555544

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1e-12  Score=77.42  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em7_A            4 GSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGP   43 (46)
T ss_dssp             CCSSSCCCSEEC--SSSCCEESCHHHHHHHGGGGTTCCCSST
T ss_pred             CCCCCCCcCccC--CCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5899999999999999999966555555

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9.2e-13  Score=77.54  Aligned_cols=40  Identities=20%  Similarity=0.336  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eq4_A            4 GSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP   43 (46)
T ss_dssp             CCCSSCCCCCCB--TTTTBCCSCHHHHHHHHHHCCSSSCCCC
T ss_pred             cccCCCCCCeEC--CCCCCccCchHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5799999999999999999966555554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=77.02  Aligned_cols=40  Identities=23%  Similarity=0.350  Sum_probs=35.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytd_A            4 GSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGP   43 (46)
T ss_dssp             CCCSCCCCSEEC--SSSCCEESSHHHHHHHHHHHTCCCSSCS
T ss_pred             ccccCCCcCeEC--CCCCCeeCChHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999976555555

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.33  E-value=9.6e-13  Score=80.47  Aligned_cols=48  Identities=31%  Similarity=0.524  Sum_probs=41.5

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHH-hhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIA-SHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGC   80 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~-~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C   80 (217)
                      ..|++++||.|  +.|++.|.+...|..|++ +|                                 ++++||.|.+  |
T Consensus         5 ~~~~~~k~~~C--~~C~k~f~~~~~L~~H~~~~H---------------------------------~~~k~~~C~~--C   47 (54)
T 2eps_A            5 SSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVH---------------------------------TSERPHKCQV--W   47 (54)
T ss_dssp             CCCCSSCCEEC--SSSCCEESSHHHHHHHHHHTS---------------------------------CCCCCCCSSS--S
T ss_pred             CCCCCCCCeEC--CCCCcccCCHHHHHHHHHHhc---------------------------------CCCCCccCCC--C
Confidence            46899999999  579999999999999997 78                                 5677888887  8


Q ss_pred             cccccC
Q 027872           81 EKAYIH   86 (217)
Q Consensus        81 ~k~F~~   86 (217)
                      ++.|.+
T Consensus        48 ~k~F~~   53 (54)
T 2eps_A           48 VSGPSS   53 (54)
T ss_dssp             CCSSCC
T ss_pred             CCCCCC
Confidence            888875

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.33  E-value=6.4e-14  Score=92.67  Aligned_cols=61  Identities=16%  Similarity=0.188  Sum_probs=57.2

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCC
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASS   69 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~   69 (217)
                      ++|++++||.|  +.|++.|.+...|..|+++|++++||.|     ..|++.|.+...|.+|+++|+|
T Consensus        22 ~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           22 LIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKC-----QVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHTCCCEEC--SSSCCEESSHHHHHHHHHHHHTCCCEEC-----TTTSCEESSHHHHHHHHHHHC-
T ss_pred             HHcCCCCCeeC--CcCChhhCCHHHHHHHHHHhcCCCCCcC-----CCcchhhCChHHHHHHHHhhCC
Confidence            57889999999  5799999999999999999999999999     8999999999999999999975

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.33  E-value=9.9e-13  Score=77.46  Aligned_cols=40  Identities=15%  Similarity=0.253  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+.+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em0_A            4 GSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGP   43 (46)
T ss_dssp             CCCSCCCCCCCC--SSSCCCCSSHHHHHHHGGGGSSSSCSCS
T ss_pred             cCccCCCcCeEC--CCCCcccCCHHHHHHHHHHcCCCCCcCC
Confidence            689999999999  5899999999999999999976555555

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9.9e-13  Score=77.46  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=34.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+.+.|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq0_A            4 GSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGP   43 (46)
T ss_dssp             CCCTTCCCCEEC--TTTCCEESSHHHHHHHHTTTCCCCCSCC
T ss_pred             CcCCCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            589999999999  5799999999999999999965555544

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1e-12  Score=77.44  Aligned_cols=40  Identities=23%  Similarity=0.379  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2epz_A            4 GSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CSSCCCCCSBCC--TTTCCCBSSHHHHHHHHTTTTTCCCCSS
T ss_pred             CCCcCCCCCeEC--CCCCceeCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999966555554

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.33  E-value=1e-12  Score=77.38  Aligned_cols=40  Identities=18%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+.+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2el4_A            4 GSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGP   43 (46)
T ss_dssp             CCCSCCCCSEEC--SSSSCEESSHHHHHHHGGGSSSCCCSCC
T ss_pred             ccCCCCCCceEC--CCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999966555555

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.1e-12  Score=77.17  Aligned_cols=40  Identities=23%  Similarity=0.415  Sum_probs=35.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytj_A            4 GSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGP   43 (46)
T ss_dssp             SCTTSSCCSEEC--SSSCCEESSHHHHHHHHHHTSCCCCSSC
T ss_pred             ccCCCCCcCeEC--CCCChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            589999999999  5799999999999999999976555555

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9.7e-13  Score=77.54  Aligned_cols=40  Identities=20%  Similarity=0.360  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytq_A            4 GSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGP   43 (46)
T ss_dssp             SSCSSCCCSCBC--SSSCCBCSCHHHHHHHHTTTCCSCSSCC
T ss_pred             CcCcCCCCCcCC--CccChhhCChHHHHHHHHHhCCCCCCCC
Confidence            589999999999  5799999999999999999966555555

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.2e-12  Score=77.11  Aligned_cols=40  Identities=23%  Similarity=0.349  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2enc_A            4 GSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGP   43 (46)
T ss_dssp             SSCCCCCCSEEC--SSSCCEESSHHHHHHHHHHSCCSSCCSS
T ss_pred             CCCCCCCCCcCC--CCCCCcCCChHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5899999999999999999965555554

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.4e-12  Score=76.79  Aligned_cols=40  Identities=28%  Similarity=0.404  Sum_probs=35.4

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2elz_A            4 GSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGP   43 (46)
T ss_dssp             CSCCCCCSSCBC--SSSCCBCSSHHHHHHHGGGGGSCCCCCS
T ss_pred             CCCCCCCCCeeC--cccCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5899999999999999999976655555

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.6e-12  Score=76.62  Aligned_cols=40  Identities=23%  Similarity=0.417  Sum_probs=35.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+.+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoo_A            4 GSSGSGERPYGC--NECGKNFGRHSHLIEHLKRHFREKSSGP   43 (46)
T ss_dssp             CCCCSCCCCEEC--SSSCCEESSHHHHHHHHHHHHSTTSSCC
T ss_pred             CCCCCCCCCEEc--cccCcccCCHHHHHHHHHHHcCCCCCCC
Confidence            689999999999  5799999999999999999976666655

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.33  E-value=7e-13  Score=89.66  Aligned_cols=58  Identities=16%  Similarity=0.178  Sum_probs=50.8

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASS   69 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~   69 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||+|     .    .+.....|..|.++|.+
T Consensus        17 ~~~H~~~kpy~C--~~C~k~F~~~~~L~~H~~~Ht~ekp~~C-----~----~~~~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQC--KHCDSKLQSTAELTSHLNIHNEEFQKRA-----K----RQERRKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEEC--SSSCCEESSHHHHHHHHHHHHHHHHHHC-----C----CCSCCCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcC--CCCCCEeCCHHHHHHHHHHhCCCCCccc-----c----hhhhHHHHHhhhccccc
Confidence            367999999999  5799999999999999999999999998     2    34567788888999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.33  E-value=1.3e-12  Score=76.93  Aligned_cols=40  Identities=20%  Similarity=0.310  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em9_A            4 GSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGP   43 (46)
T ss_dssp             CCSCCCCCSEEC--SSSCCEESSHHHHHHHGGGGTSCCCCST
T ss_pred             CCCCCCCcCeEC--CccccccCChHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999976555555

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=75.47  Aligned_cols=40  Identities=20%  Similarity=0.366  Sum_probs=36.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         2 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            2 SSGSSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CSSSCSCCSCBC--TTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCcCCCCCeEC--CCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.5e-12  Score=76.70  Aligned_cols=40  Identities=23%  Similarity=0.381  Sum_probs=35.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yso_A            4 GSSGSREKSHQC--RECGEIFFQYVSLIEHQVLHMGQKNSGP   43 (46)
T ss_dssp             SCCSSCCCCEEC--TTTCCEESSHHHHHHHHHHHSCCSCCCT
T ss_pred             ccccCCCCCEEc--cccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999976555555

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.5e-12  Score=76.65  Aligned_cols=40  Identities=23%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eov_A            4 GSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGP   43 (46)
T ss_dssp             CCCCSSCCSCBC--SSSCCBCSSHHHHHHHHHHHSCCSSCCS
T ss_pred             CCCCCCCCCccC--CccChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5799999999999999999965555544

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1e-12  Score=77.38  Aligned_cols=40  Identities=23%  Similarity=0.368  Sum_probs=34.8

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoe_A            4 GSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGP   43 (46)
T ss_dssp             SSCCCCCCSSEE--TTTTEECSSHHHHHHHHGGGSCCCSCSS
T ss_pred             CCCCCCCCCeEC--CCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999965555554

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.3e-12  Score=76.91  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep2_A            4 GSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGP   43 (46)
T ss_dssp             SSCSSCCCSEEC--SSSCCEESSHHHHHHHHHTTSSCCSCCS
T ss_pred             CCCCCCCcCcCC--CCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999  5799999999999999999966555554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.1e-12  Score=75.67  Aligned_cols=40  Identities=20%  Similarity=0.409  Sum_probs=36.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         3 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEEC--TTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeC--CCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            589999999999  5799999999999999999988888766

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-12  Score=76.50  Aligned_cols=40  Identities=18%  Similarity=0.322  Sum_probs=35.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+.+.|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emp_A            4 GSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGP   43 (46)
T ss_dssp             CSCSSCCCSEEC--SSSCCEESCHHHHHHHHHHHHCCSCCSC
T ss_pred             ccccCCCcCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999976666655

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.3e-12  Score=76.99  Aligned_cols=40  Identities=20%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoq_A            4 GSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGP   43 (46)
T ss_dssp             CCCSSSSCSCCC--SSSCCCCSSHHHHHHHHHHTTCCCSSSC
T ss_pred             CCCCCCCCCcCC--CcCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            579999999999  5799999999999999999976555555

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.7e-12  Score=76.42  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=35.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emh_A            4 GSSGTGERPYIC--TVCGKAFTDRSNLIKHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCSCSCCCSEEC--TTTCCEESSHHHHHHHHHHHHCSSCSSS
T ss_pred             CCCCCCCCCcCC--CCCCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5799999999999999999976666655

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=76.92  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=36.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em4_A            4 GSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSSSEEC--SSSCCEESSHHHHHHHHHHHSSSSCCCC
T ss_pred             ccccCCCcCcCC--CCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5799999999999999999987777666

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.3e-12  Score=76.97  Aligned_cols=40  Identities=20%  Similarity=0.352  Sum_probs=35.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ep3_A            4 GSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGP   43 (46)
T ss_dssp             CSSSSCCCSEEC--SSSCCEESSHHHHHHHHTTTTTSCCCCT
T ss_pred             CCCCCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999976666655

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.8e-12  Score=76.39  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=35.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em8_A            4 GSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGP   43 (46)
T ss_dssp             CCCCCSCCSEEC--SSSCCEESSHHHHHHHHHHHHCCCCCCS
T ss_pred             CCCCCCCCCeEC--cccCchhCCHHHHHHHHHHHcCCCCCCC
Confidence            689999999999  5899999999999999999976666655

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.7e-12  Score=76.40  Aligned_cols=40  Identities=23%  Similarity=0.339  Sum_probs=34.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eme_A            4 GSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCTTCCCCSEEC--SSSCCEESSHHHHHHHHGGGCCCSCCSS
T ss_pred             CCCCCCCCCeEC--CCCChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5799999999999999999965555544

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.4e-12  Score=77.37  Aligned_cols=42  Identities=24%  Similarity=0.453  Sum_probs=35.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      .++|++++||+|.|+.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C   45 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP   45 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSS
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            478999999999644899999999999999999966555554

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.32  E-value=1.7e-12  Score=76.41  Aligned_cols=40  Identities=20%  Similarity=0.390  Sum_probs=35.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ema_A            4 GSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGP   43 (46)
T ss_dssp             CSSCTTSCCEEC--SSSCCEESSHHHHHHHHTGGGCCCCCSS
T ss_pred             ccCCCCCcCcCC--CCCcchhCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5799999999999999999976655555

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.2e-12  Score=77.04  Aligned_cols=40  Identities=25%  Similarity=0.432  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eop_A            4 GSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCSCCCCCSCBC--TTTCCBCSSHHHHHHHHTTTTTSCCSCC
T ss_pred             ccccCCCCCeeC--CCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999976555555

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.2e-13  Score=92.77  Aligned_cols=64  Identities=22%  Similarity=0.335  Sum_probs=44.3

Q ss_pred             eecCCCCCCccccChhhHHHHHHh-hcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChH
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIAS-HHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEY   88 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~-H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~   88 (217)
                      |.|  +.|++.|.+...|..|+++ |++.++..+                         ..-++|.|.+  |++.|.+..
T Consensus        26 ~~C--~~C~k~f~~~~~L~~H~~~~H~~~~~~~~-------------------------~~c~~~~C~~--C~k~f~~~~   76 (95)
T 2ej4_A           26 RPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNN-------------------------HVCYWEECPR--EGKSFKAKY   76 (95)
T ss_dssp             SSC--CCCCCCCSSHHHHHHHHHHTTTCCTTCSC-------------------------CCCCCTTCSS--TTCCCSSHH
T ss_pred             Ccc--cccccccCCHHHHHHHHHHhccCCCCCCc-------------------------cceeccCCCC--CCcccCCHH
Confidence            456  4799999999999999998 877665322                         0013367766  777777777


Q ss_pred             HHHHHHHhhCCCCCC
Q 027872           89 KLKLHLKREHPGHMS  103 (217)
Q Consensus        89 ~L~~H~~~~h~~~~~  103 (217)
                      .|.+|+++ |++..+
T Consensus        77 ~L~~H~~~-H~~~k~   90 (95)
T 2ej4_A           77 KLVNHIRV-HTGEKS   90 (95)
T ss_dssp             HHHHHHHH-HHTCCC
T ss_pred             HHHHHHHh-cCCCCC
Confidence            77777766 444443

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.32  E-value=1.7e-12  Score=76.49  Aligned_cols=40  Identities=20%  Similarity=0.380  Sum_probs=36.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emj_A            4 GSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCSEEC--SSSSCEESSHHHHHHHHHHHTTSCSSSS
T ss_pred             CCCCCCCCCEEC--CCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.6e-12  Score=76.58  Aligned_cols=40  Identities=18%  Similarity=0.308  Sum_probs=35.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytm_A            4 GSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGP   43 (46)
T ss_dssp             CCCCSSCCSSSB--TTTTBCCSSHHHHHHHHHHHHSCCCCCC
T ss_pred             CcCCCCCCCcCC--CCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999976666655

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.5e-12  Score=76.56  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2epw_A            4 GSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGP   43 (46)
T ss_dssp             CCCCCCCCSEEC--SSSCCEESSSHHHHHHHHHCCSCCCSCC
T ss_pred             cccCCCCCCeeC--CCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            579999999999  5799999999999999999976555555

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.3e-12  Score=76.93  Aligned_cols=40  Identities=20%  Similarity=0.420  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em5_A            4 GSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSCSEEC--SSSCCEESSHHHHHHHHTTTSCSCCSSC
T ss_pred             cCCCCCCCCeEC--CcCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999976555555

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.31  E-value=1.6e-12  Score=74.86  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=36.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         3 ~~~H~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLC--GQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEEC--SSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCCCCeEC--CCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            589999999999  5799999999999999999987777765

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.7e-12  Score=76.44  Aligned_cols=40  Identities=20%  Similarity=0.346  Sum_probs=35.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2yu8_A            4 GSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGP   43 (46)
T ss_dssp             CCCCCCCSSEEC--SSSCCEESSSHHHHHHTHHHHSCCCSCS
T ss_pred             CcCCCCCCCeEC--CcCCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            589999999999  5799999999999999999976666655

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.2e-12  Score=77.05  Aligned_cols=40  Identities=23%  Similarity=0.392  Sum_probs=34.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytr_A            4 GSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGP   43 (46)
T ss_dssp             SCCCSSCCTTCC--TTTCCCCSSHHHHHHHHTTTTTCSCCCS
T ss_pred             CcCCCCCcCcCC--CCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5799999999999999999965555544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.4e-12  Score=76.70  Aligned_cols=40  Identities=25%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||+|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en8_A            4 GSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGP   43 (46)
T ss_dssp             CCCCCCCSSEEC--TTTCCEESSHHHHHHHHTTTCCSCSSCC
T ss_pred             cccCCCCCCeEC--CCcCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999966555555

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.1e-12  Score=77.21  Aligned_cols=40  Identities=23%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ysp_A            4 GSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGP   43 (46)
T ss_dssp             CCCCSSCCSEEE--TTTTEEESCHHHHHHHHTTSCSCCSSCC
T ss_pred             CcCCCCCCCeEC--CCCCCccCCHHHHHHHHHhhCCCCCCCC
Confidence            689999999999  5899999999999999999966555554

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.7e-12  Score=76.53  Aligned_cols=40  Identities=23%  Similarity=0.368  Sum_probs=36.4

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||+|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            4 GSSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCSSCCC--SSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCCCCCcCC--CCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5899999999999999999987777766

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=7.5e-13  Score=84.31  Aligned_cols=56  Identities=25%  Similarity=0.421  Sum_probs=48.7

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecC-ccccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACP-YEGCE   81 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~-~~~C~   81 (217)
                      .+.+++||.|  +.|++.|. ...|..|+++ +                                 +++||+|. .  |+
T Consensus         4 ~~C~~~~~~C--~~C~k~f~-~~~L~~H~~~-~---------------------------------~~~p~~C~~~--C~   44 (66)
T 2eod_A            4 GSSGKRTQPC--TYCTKEFV-FDTIQSHQYQ-C---------------------------------PRLPVACPNQ--CG   44 (66)
T ss_dssp             SCCCCCEEEC--SSSCCEEE-HHHHHHHHHH-C---------------------------------SSSEEECTTC--CS
T ss_pred             ccCCCCCeec--cccCCccC-HHHHHHHHHH-c---------------------------------CCcCccCCcc--cC
Confidence            3578999999  57999999 9999999987 5                                 56888888 7  99


Q ss_pred             ccccChHHHHHHHHhh
Q 027872           82 KAYIHEYKLKLHLKRE   97 (217)
Q Consensus        82 k~F~~~~~L~~H~~~~   97 (217)
                      +.|.+++.|..|+++|
T Consensus        45 k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A           45 VGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCEEETTTHHHHHHTT
T ss_pred             cccccHHHHHHHHHhh
Confidence            9999999999999874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.9e-12  Score=76.14  Aligned_cols=40  Identities=23%  Similarity=0.367  Sum_probs=36.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            4 GSSGTGEKPYKC--NECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCCSCCCCCEEC--TTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             cCCCCCCCCeec--cccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            589999999999  5799999999999999999977766666

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.3e-12  Score=75.90  Aligned_cols=40  Identities=23%  Similarity=0.444  Sum_probs=35.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em2_A            4 GSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGP   43 (46)
T ss_dssp             CCSCCCCCSEEC--SSSCCEESSHHHHHHHHHHHCCCCSSCS
T ss_pred             CCCCCCCCCEEC--CcCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999976666655

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.6e-12  Score=76.60  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=36.4

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoh_A            4 GSSGSGKKPYEC--KECRKTFIQIGHLNQHKRVHTGERSSGP   43 (46)
T ss_dssp             CCSCCCSCSCCC--SSSCCCCSSHHHHHHHHHHCSSCCSCST
T ss_pred             CCCcCCCCCcCC--CCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2e-12  Score=76.15  Aligned_cols=40  Identities=20%  Similarity=0.361  Sum_probs=36.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emi_A            4 GSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGP   43 (46)
T ss_dssp             CCSCSSCCCEEC--SSSCCEESSHHHHHHHHGGGCSCCCCSC
T ss_pred             CcccCCCCCCCC--CCCCcccCCHHHHHHHHhHhCCCCCCCC
Confidence            689999999999  5799999999999999999977766666

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.3e-12  Score=77.05  Aligned_cols=40  Identities=20%  Similarity=0.299  Sum_probs=36.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eon_A            4 GSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGP   43 (46)
T ss_dssp             SSSCSSCCSCBC--SSSCCBCSSHHHHHHHTTTTTSCCSCTT
T ss_pred             CCCCCCCcccCC--CCCCcccCcHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5899999999999999999977766666

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.6e-12  Score=76.54  Aligned_cols=40  Identities=23%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytp_A            4 GSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSCCCCCEEC--SSSCCEESSHHHHHHHHTTTSCCCCCSS
T ss_pred             ccCcCCCCCeEC--CcCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999977666666

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=77.09  Aligned_cols=40  Identities=23%  Similarity=0.421  Sum_probs=34.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytg_A            4 GSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCSEEC--TTTCCEESSSHHHHTTGGGGSSCCSSCS
T ss_pred             CCCCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            579999999999  5799999999999999999966555555

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2e-12  Score=76.12  Aligned_cols=40  Identities=23%  Similarity=0.375  Sum_probs=35.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en6_A            4 GSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGP   43 (46)
T ss_dssp             SCCCCSSCCEEE--TTTTEEESSHHHHHHHHHHHSSCCCSSS
T ss_pred             CCccCCCcCeEC--CCCCcccCchHHHHHHHHHcCCCCCCCC
Confidence            589999999999  5799999999999999999976655555

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2e-12  Score=76.14  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=36.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            4 GSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCSCCCEEC--SSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             ccccCCCCCEEC--cccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            689999999999  5899999999999999999987777776

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.4e-12  Score=75.25  Aligned_cols=40  Identities=25%  Similarity=0.421  Sum_probs=36.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+.+.|..|+++|++++||+|
T Consensus         3 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCC--SSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CcccCCCCCEEC--CCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            589999999999  5899999999999999999987777765

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.7e-12  Score=76.46  Aligned_cols=40  Identities=25%  Similarity=0.473  Sum_probs=34.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en1_A            4 GSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             TTCCCCCCSEEE--TTTTEEESSHHHHHHHGGGGSCCCCSCC
T ss_pred             ccCCCCCCCeeC--CCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            579999999999  5799999999999999999976555555

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.1e-12  Score=76.04  Aligned_cols=40  Identities=15%  Similarity=0.307  Sum_probs=36.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en9_A            4 GSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CSSCCSSCCCBC--TTTCCBCSSHHHHHHHHHHHTSSCCCSC
T ss_pred             CCCCCCCCCEEC--CccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=75.47  Aligned_cols=40  Identities=23%  Similarity=0.377  Sum_probs=35.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         3 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCC--TTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccccCCCCCeeC--CCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999987777765

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.4e-12  Score=75.79  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=35.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            4 GSSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCSEEC--SSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCCcCeEC--CCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999977666666

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.8e-12  Score=76.28  Aligned_cols=40  Identities=20%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enf_A            4 GSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCSCBC--SSSCCBCSSHHHHHHHHTTTTTSSCCCC
T ss_pred             CcCCCCCcCeEC--CCCCcccCCHHHHHHHHHhhCCCCCCCC
Confidence            689999999999  5799999999999999999977666666

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.6e-12  Score=76.60  Aligned_cols=40  Identities=23%  Similarity=0.498  Sum_probs=35.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytt_A            4 GSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGP   43 (46)
T ss_dssp             SSSCSCCCTTCC--SSSCCCCSSHHHHHHHHTHHHHCCCCSC
T ss_pred             CCCCCCCCCeeC--CCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999976666655

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.3e-12  Score=74.98  Aligned_cols=40  Identities=18%  Similarity=0.310  Sum_probs=36.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            4 GSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             SSCCSCCCSEEC--TTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             ccCCCCCCCeEC--CCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            579999999999  5799999999999999999987777766

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.7e-12  Score=76.46  Aligned_cols=40  Identities=20%  Similarity=0.310  Sum_probs=36.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enh_A            4 GSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGP   43 (46)
T ss_dssp             CCCCCCSSSCBC--TTTCCBCSSSHHHHHHGGGSCCSCCCCC
T ss_pred             CCCcCCCCCcCC--CCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999977777666

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.1e-12  Score=75.99  Aligned_cols=40  Identities=23%  Similarity=0.425  Sum_probs=36.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~p~~C   43 (46)
T 2yts_A            4 GSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGP   43 (46)
T ss_dssp             SCCCCSCCSEEC--SSSCCEESSHHHHHHHGGGTSSCCSSCC
T ss_pred             CCCCCCCcCEEC--CCCChhhCChHHHHHHHHhcCCCCCcCC
Confidence            689999999999  5799999999999999999977777666

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.2e-12  Score=75.19  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=36.4

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            4 GSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             SCCCSCCCSEEC--SSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             ccccCCCCCeEC--CCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            579999999999  5799999999999999999987777766

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.5e-12  Score=75.89  Aligned_cols=40  Identities=23%  Similarity=0.414  Sum_probs=36.3

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            4 GSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CCSSSSCCSCEE--TTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             ccccCCCcCeeC--CCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2e-12  Score=76.10  Aligned_cols=40  Identities=20%  Similarity=0.364  Sum_probs=35.8

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            4 GSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCSSSSSCSSSC--CSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             ccccCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            589999999999  5799999999999999999977666666

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.6e-12  Score=75.56  Aligned_cols=40  Identities=23%  Similarity=0.443  Sum_probs=36.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A            4 GSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             SSSSSCCCSEEC--TTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             CcCcCCCcCccC--CCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.8e-12  Score=75.45  Aligned_cols=40  Identities=18%  Similarity=0.193  Sum_probs=35.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep0_A            4 GSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSTTCCSEEC--SSSCCEESSHHHHHHHHTTTSSSCCCSC
T ss_pred             CCCCCCCCCeeC--cccCcccCChHHHHHHHHHhCCCCCCCC
Confidence            589999999999  5799999999999999999976555555

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.4e-12  Score=75.74  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=36.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytf_A            4 GSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGP   43 (46)
T ss_dssp             CCSSCCCCSEEC--SSSCCEESSHHHHHHHHHTSCSSSSSCC
T ss_pred             CCCCCCCCCcCC--CCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999  5799999999999999999977766666

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.4e-12  Score=75.80  Aligned_cols=40  Identities=25%  Similarity=0.467  Sum_probs=36.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yth_A            4 GSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CSCCCCSSSBCC--SSSCCCBSSHHHHHHHGGGGTTCCCSSC
T ss_pred             ccCCCCCcCCCC--CCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            579999999999  5799999999999999999987777766

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=4e-13  Score=93.34  Aligned_cols=68  Identities=16%  Similarity=0.031  Sum_probs=59.4

Q ss_pred             hhcCCCCcccCCcCCCCCCCcccCCCCcccccc-cC---CCCCCeecCcccccccccChHHHHHH-HHhhCCCCCCcccc
Q 027872           33 SHHEKNAAVEVPRYATPPERITKTPKPPAGVYG-SA---SSERPYACPYEGCEKAYIHEYKLKLH-LKREHPGHMSDENA  107 (217)
Q Consensus        33 ~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~-~H---~~ekp~~C~~~~C~k~F~~~~~L~~H-~~~~h~~~~~~~~~  107 (217)
                      .-+|++||.|     ..|++.|.+...|.+|++ +|   ++++||.|.+  |+++|.+.+.|.+| +++ |++..+..+.
T Consensus        12 ~~~gekpy~C-----~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~--Cgk~F~~~~~L~~H~~r~-Htgekpy~C~   83 (102)
T 2ghf_A           12 NKKVEGGYEC-----KYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVE--CNFLTKRYDALSEHNLKY-HPGEENFKLT   83 (102)
T ss_dssp             CCCCCSSEEC-----SSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETT--TTEEESSTHHHHTHHHHT-STTCCCEEEE
T ss_pred             cCCCCcCcCC-----CCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCC--CCcccCCHHHHHHHHHHh-cCCCCCeeCC
Confidence            3468999999     999999999999999997 59   6789999999  99999999999999 665 8888876554


Q ss_pred             c
Q 027872          108 E  108 (217)
Q Consensus       108 ~  108 (217)
                      .
T Consensus        84 ~   84 (102)
T 2ghf_A           84 M   84 (102)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.3e-12  Score=75.90  Aligned_cols=40  Identities=20%  Similarity=0.357  Sum_probs=36.4

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A            4 GSSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             CCCCSSCCSEEE--TTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             cccCCCCCCeEC--cccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.5e-12  Score=75.62  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=36.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep1_A            4 GSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCCCSSCCSSCC--SSSCCCCSSHHHHHHHHGGGSSSCCCSS
T ss_pred             ccCCCCCCCcCC--CCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999977776666

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.5e-12  Score=75.77  Aligned_cols=40  Identities=20%  Similarity=0.358  Sum_probs=36.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em6_A            4 GSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGP   43 (46)
T ss_dssp             CSCCCCCCCCBC--SSSCCBCSSHHHHHHHHTTTSSSCCCCT
T ss_pred             ccccCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999977776666

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.28  E-value=2.3e-12  Score=81.93  Aligned_cols=40  Identities=20%  Similarity=0.164  Sum_probs=35.8

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHH-HhhcCCCCccc
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHI-ASHHEKNAAVE   42 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~-~~H~~~kp~~c   42 (217)
                      .++|+|||+|.++.|+|+|.++++|.+|+ ++|+++|||.|
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            47899999997667999999999999997 68998888877

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.6e-12  Score=75.56  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=35.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yrj_A            4 GSSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCEEC--SSSCCEESSHHHHHHHHTTTSSCCSSCS
T ss_pred             ccCCCCCCCeEC--CCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999  5799999999999999999977766666

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.3e-12  Score=75.83  Aligned_cols=40  Identities=28%  Similarity=0.468  Sum_probs=35.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2emg_A            4 GSSGTGENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSGP   43 (46)
T ss_dssp             CCCCCSCCSCBC--TTTCCBCSSHHHHHHHHTTTSCCCCSCS
T ss_pred             CCCCCCCCCEEC--CccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999977766666

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=2.4e-12  Score=73.83  Aligned_cols=39  Identities=21%  Similarity=0.353  Sum_probs=35.4

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      ++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEEC--SSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeEC--CCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            68999999999  5799999999999999999987777765

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.1e-12  Score=76.01  Aligned_cols=40  Identities=20%  Similarity=0.368  Sum_probs=36.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A            4 GSSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSCCCTTCC--SSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             CcCCCCCcCeEC--CCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            589999999999  5799999999999999999977777666

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.3e-12  Score=75.87  Aligned_cols=40  Identities=20%  Similarity=0.357  Sum_probs=36.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq1_A            4 GSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSCCCCC--TTTTCCCSSHHHHHHHHTTTCCSCCSSC
T ss_pred             ccccCCCCCeEC--CcCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999977777666

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.2e-12  Score=75.12  Aligned_cols=40  Identities=18%  Similarity=0.349  Sum_probs=36.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            4 GSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CCCSSSSSSSCC--TTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CcCCCCCcCeEC--CCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.3e-12  Score=75.90  Aligned_cols=40  Identities=23%  Similarity=0.435  Sum_probs=36.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||+|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emz_A            4 GSSGSGERPFKC--NECGKGFGRRSHLAGHLRLHSREKSSGP   43 (46)
T ss_dssp             CSCSSCCCSCCC--SSSCCCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred             CcCCCCCCCeEC--CCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999987777776

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.6e-12  Score=75.26  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=35.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHH-hhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIA-SHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~-~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|++ +|++++||+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~~H~~~k~~~C   44 (47)
T 2epx_A            4 GSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGP   44 (47)
T ss_dssp             CCCCCCCCSBCC--SSSCCCBSSHHHHHHHHTTTTTTSCSSSC
T ss_pred             ccccCCCCCEEC--CccCchhCChHHHHHHhHhhcCCCCCCCC
Confidence            689999999999  579999999999999999 9976655555

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=3.1e-12  Score=74.56  Aligned_cols=40  Identities=15%  Similarity=0.270  Sum_probs=36.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            4 GSSGHTRKRYEC--SKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CSCCCCCSSEEC--TTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             ccccCCCCCeEC--CCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            689999999999  5799999999999999999987777776

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2e-12  Score=75.32  Aligned_cols=40  Identities=20%  Similarity=0.443  Sum_probs=36.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            4 GSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCEEE--TTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CcCCCCCCCeEC--cccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999  5799999999999999999987777766

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.9e-12  Score=75.40  Aligned_cols=40  Identities=20%  Similarity=0.425  Sum_probs=36.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            4 GSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCSCCCCSEEC--SSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             ccccCCCCCeeC--cccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999  5799999999999999999988888777

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.7e-12  Score=74.23  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=36.4

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            4 GSSGAAKTTSEC--QECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSCSSSCCCCC--TTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCcCeEC--CCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            579999999999  5899999999999999999987777766

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.27  E-value=1.7e-13  Score=95.64  Aligned_cols=66  Identities=14%  Similarity=0.049  Sum_probs=60.1

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccc-cCCCCCCeecCc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYG-SASSERPYACPY   77 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~-~H~~ekp~~C~~   77 (217)
                      ++|  .+||.|  +.|++.|.....|..|++ |++++||.|     ..|++.|.+...|.+|++ +|++++||.|..
T Consensus        37 ~~H--~~~~~C--~~C~~~f~~~~~l~~H~~-H~~~~~~~C-----~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           37 RLC--RNAAVC--PYCSLRFFSPELKQEHES-KCEYKKLTC-----LECMRTFKSSFSIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             HHH--HHSBCC--TTTCCCBSSHHHHHHHHH-HCSTGGGEE-----GGGTEECSSHHHHHHHHHHTSCCCCCCCCCC
T ss_pred             HHC--CCCccC--CCCCCccCCHHHHHHHHH-cCCCCCccC-----ccccchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            345  479999  579999999999999996 999999999     899999999999999997 999999999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.4e-12  Score=73.98  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=36.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            4 GSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCSEEC--SSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CcccCCCcCeEC--CCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            689999999999  5899999999999999999988877765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3.6e-12  Score=75.05  Aligned_cols=40  Identities=18%  Similarity=0.307  Sum_probs=36.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcC-CCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHE-KNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~-~kp~~c   42 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++ ++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A            4 GSSGQKEKCFKC--NKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             CCCCCCSCCEEC--SSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             ccccCCCCCEEC--cCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            689999999999  5799999999999999999977 777766

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=5.3e-12  Score=73.27  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=35.5

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      ++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            3 SGSSGNGAFFC--NECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             SCCSSSCCBCC--SSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             cCcCCCCCEEC--CCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            78999999999  5799999999999999999987777766

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.25  E-value=4.4e-12  Score=74.29  Aligned_cols=39  Identities=26%  Similarity=0.468  Sum_probs=33.0

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      .+|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C   41 (45)
T 2epq_A            3 SGSSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKSG   41 (45)
T ss_dssp             CCCSSCCSSEE--TTTTEECSCHHHHHHHHHHHSCCCCCCC
T ss_pred             CCcCCCCCCcC--CCCCcccCCHHHHHHHHHHccCCCCCCC
Confidence            58999999999  5799999999999999999964444433

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.1e-12  Score=75.22  Aligned_cols=40  Identities=25%  Similarity=0.371  Sum_probs=35.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A            4 GSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             CCSSCCCCSSEE--TTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             ccCCCCCCCeEC--CCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999  5799999999999999999977766666

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.24  E-value=1.2e-12  Score=89.01  Aligned_cols=64  Identities=22%  Similarity=0.326  Sum_probs=58.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCC--CCcccCCcCCCCCCCcccCCCCcccccc-cCCCCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK--NAAVEVPRYATPPERITKTPKPPAGVYG-SASSER   71 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~--kp~~c~~~~~~~~~~~~~~~~~l~~H~~-~H~~ek   71 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++.  +||.|     ..|++.|.+...|..|++ +|+++.
T Consensus        27 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C-----~~C~~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           27 KLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYIC-----QSCGKGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             HHHSCSSCSEEC--SSSCCEESCHHHHHHHHHHHCCCCCSSBCC-----SSSCCCBSSHHHHHHHHHHTSCCCS
T ss_pred             HHhcCCCCCCcC--CCCCCccCCHHHHHHHHHHhcCCCCCceEC-----CCccchhCCHHHHHHHHHHhcCCCC
Confidence            357999999999  57999999999999999999997  99999     899999999999999985 898753

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.5e-12  Score=74.26  Aligned_cols=40  Identities=18%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A            4 GSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             CCCCCSCCSEEE--TTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             CCCCCCCcCccC--CCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            478999999999  5799999999999999999987777766

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.21  E-value=2.1e-12  Score=81.32  Aligned_cols=50  Identities=10%  Similarity=0.325  Sum_probs=40.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGC   80 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C   80 (217)
                      +++|++++||.|  +.|++.|.+...|.   ++|                                 ++++||+|.+  |
T Consensus         6 ~~~H~~~k~~~C--~~C~k~F~~~~~l~---~~H---------------------------------~~~k~~~C~~--C   45 (62)
T 1vd4_A            6 ERDSTNRASFKC--PVCSSTFTDLEANQ---LFD---------------------------------PMTGTFRCTF--C   45 (62)
T ss_dssp             SSSCCSSSEEEC--SSSCCEEEHHHHHH---HEE---------------------------------TTTTEEBCSS--S
T ss_pred             HHHcCCCCCccC--CCCCchhccHHHhH---hhc---------------------------------CCCCCEECCC--C
Confidence            578999999999  58999999988876   667                                 5677888877  8


Q ss_pred             cccccChHHH
Q 027872           81 EKAYIHEYKL   90 (217)
Q Consensus        81 ~k~F~~~~~L   90 (217)
                      ++.|....++
T Consensus        46 ~k~f~~~~~~   55 (62)
T 1vd4_A           46 HTEVEEDESA   55 (62)
T ss_dssp             CCBCEECTTC
T ss_pred             CCccccCccc
Confidence            8888766554

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.20  E-value=1e-11  Score=73.82  Aligned_cols=33  Identities=27%  Similarity=0.509  Sum_probs=29.4

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      .|++++||.|  ++|++.|.+...|..|+++|+++
T Consensus         6 ~~~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (48)
T 2epr_A            6 SGRTRKQVAC--EICGKIFRDVYHLNRHKLSHSGE   38 (48)
T ss_dssp             CCCCCCSEEE--TTTTEEESSHHHHHHHGGGSCSC
T ss_pred             CCCCCcCeeC--CCCCcccCCHHHHHHHHHhcCCC
Confidence            5889999999  57999999999999999999543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.19  E-value=1.7e-12  Score=87.29  Aligned_cols=56  Identities=16%  Similarity=0.206  Sum_probs=52.9

Q ss_pred             CCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChHHHHHHHHhhCC
Q 027872           37 KNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        37 ~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      ++||.|     ..|++.|.+...|..|+++|++++||.|.+  |++.|.....|.+|+++||.
T Consensus         1 ek~~~C-----~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQC-----RICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEEC-----TTTCCEESCHHHHHHHHHHHHCCCCEECTT--TCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcC-----CCCCCccCCHHHHHHHHHHcCCCCCccCCC--CCCccCCHHHHHHHHHHhCC
Confidence            478888     999999999999999999999999999999  99999999999999999873

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.4e-11  Score=68.79  Aligned_cols=37  Identities=24%  Similarity=0.476  Sum_probs=34.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNA   39 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp   39 (217)
                      |++|++++||.|  +.|++.|.+...|..|+++|++++|
T Consensus         1 ~~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSC--PVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEE--TTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCC--CCCCCccCCHHHHHHHHHHHcCCCC
Confidence            689999999999  5799999999999999999987765

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.18  E-value=1.8e-12  Score=93.36  Aligned_cols=59  Identities=14%  Similarity=0.180  Sum_probs=55.6

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSE   70 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~e   70 (217)
                      +|++++||.|  +.|++.|.+...|..|+++|  .+||.|     ..|++.|.+...|.+|+++|++.
T Consensus        68 ~h~~~~~~~C--~~C~k~f~~~~~l~~H~~~H--~~~~~C-----~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           68 ASKAISQFVC--PLCLMPFSSSVSLKQHIRYT--EHTKVC-----PVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHCSEEC--TTTCCEESSHHHHHHHHHHT--CCCCBC-----TTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HhCCCCCeEC--CCCCcccCCHhHHHHHHHHC--CCCCCC-----CCCCcccCCHHHHHHHHHHHCCc
Confidence            4888999999  57999999999999999999  899999     99999999999999999999875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=3.4e-12  Score=83.77  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=54.9

Q ss_pred             cCCCCcccCCcCCCCCCCcccCCCCcccccc-cCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           35 HEKNAAVEVPRYATPPERITKTPKPPAGVYG-SASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        35 ~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~-~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      ++.++|.|   .+..|++.|.+...|.+|++ +|++++||.|.+++|++.|.+...|.+|+++| .+..+
T Consensus         3 ~~~~~~~C---~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H-~~~~~   68 (79)
T 2dlk_A            3 SGSSGMPC---DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH-SDTRD   68 (79)
T ss_dssp             SCCSSEEC---SSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHH-HTSCC
T ss_pred             CCCCCccC---CCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHh-CCCCC
Confidence            56788888   12349999999999999999 89999999997666999999999999999985 44443

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.16  E-value=1.6e-11  Score=74.82  Aligned_cols=49  Identities=22%  Similarity=0.336  Sum_probs=42.7

Q ss_pred             CCcccCCCCcccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCC
Q 027872           51 ERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        51 ~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      ++.|.+...|..|+++|++++||.|.+  |++.|.+.+.|..|+++ |.+..
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k   51 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPI--CYAVIRQSRNLRRHLEL-RHFAK   51 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTT--TCCEESSHHHHHHHHHH-HTTTS
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCC--CCcccCCHHHHHHHHHH-hccCC
Confidence            466788888888999999999999998  99999999999999988 55544

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=2.8e-11  Score=67.98  Aligned_cols=37  Identities=27%  Similarity=0.523  Sum_probs=33.6

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCc
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAA   40 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~   40 (217)
                      |++++||.|.++.|++.|.+.+.|..|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            7899999995446999999999999999999988887

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.15  E-value=2.1e-12  Score=90.35  Aligned_cols=61  Identities=16%  Similarity=0.093  Sum_probs=56.8

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSAS   68 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~   68 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++.+||.|     ..|++.|.+...|.+|+++|.
T Consensus        29 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C-----~~C~~~f~~~~~l~~H~~~~~   89 (110)
T 2csh_A           29 MSMHLGLRPYGC--GVCGKKFKMKHHLVGHMKIHTGIKPYEC-----NICAKRFMWRDSFHRHVTSCT   89 (110)
T ss_dssp             HHHHSCCCSEEC--TTTSCEESSSHHHHHHHTTTCCCCCEEC-----SSSCCEESCHHHHHHHHHHHH
T ss_pred             HHHcCCCcCccC--CCCCcccCCHHHHHHHHHHcCCCCCeeC-----CCCcchhcCHHHHHHHHHHcc
Confidence            357899999999  5799999999999999999999999999     899999999999999998875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=4.6e-11  Score=67.57  Aligned_cols=35  Identities=26%  Similarity=0.458  Sum_probs=31.2

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      .|+++|||+|.++.|+|+|.+++.|+.|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            58999999996445999999999999999999864

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=3.9e-13  Score=86.81  Aligned_cols=67  Identities=12%  Similarity=0.063  Sum_probs=59.0

Q ss_pred             ChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCC
Q 027872           23 HEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        23 ~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      +...|..|+++|++++||.|     ..|++.|.+...|..       ++||.|.+  |++.|.+.+.|.+|+++ |.+..
T Consensus         2 ~~~~l~~H~~~h~~~~~~~C-----~~C~k~f~~~~~l~~-------~~~~~C~~--C~~~f~~~~~l~~H~~~-H~~~~   66 (73)
T 2ctu_A            2 SSGSSGKRQKIHLGDRSQKC-----SKCGIIFIRRSTLSR-------RKTPMCEK--CRKDSCQEAALNKDEGN-ESGKK   66 (73)
T ss_dssp             CCCSCCCCCCCCCCCSEEEC-----SSSCCEEECCCCCCC-------SSSCCCHH--HHHTCSCCCSSCCCSSC-CCCCC
T ss_pred             cchhHHHHHHHhCCCCCeeC-----CcccchhCCHHHhCc-------CCCCCCCC--CChhhcCHHHHHHHHHh-hcCCC
Confidence            35678899999999999999     899999999999886       79999998  99999999999999987 55555


Q ss_pred             Cc
Q 027872          103 SD  104 (217)
Q Consensus       103 ~~  104 (217)
                      +.
T Consensus        67 ~~   68 (73)
T 2ctu_A           67 TS   68 (73)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=4.8e-12  Score=80.49  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=28.0

Q ss_pred             CCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           68 SSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        68 ~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      .+++||+|.+  |++.|. .+.|..|+++  .+..+..
T Consensus         6 C~~~~~~C~~--C~k~f~-~~~L~~H~~~--~~~~p~~   38 (66)
T 2eod_A            6 SGKRTQPCTY--CTKEFV-FDTIQSHQYQ--CPRLPVA   38 (66)
T ss_dssp             CCCCEEECSS--SCCEEE-HHHHHHHHHH--CSSSEEE
T ss_pred             CCCCCeeccc--cCCccC-HHHHHHHHHH--cCCcCcc
Confidence            5789999999  999999 9999999987  5555543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.5e-13  Score=95.14  Aligned_cols=75  Identities=5%  Similarity=-0.235  Sum_probs=62.9

Q ss_pred             hhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCccccccc--CCCCCCee-cCcccccccc--cChHHHHHHHHhhC
Q 027872           24 EYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGS--ASSERPYA-CPYEGCEKAY--IHEYKLKLHLKREH   98 (217)
Q Consensus        24 ~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~--H~~ekp~~-C~~~~C~k~F--~~~~~L~~H~~~~h   98 (217)
                      .+.|..|+++|++++||.|     ..|++.|.+...|..|+++  |.+.++|. |.+  |++.|  .....|..|+++ |
T Consensus         4 ~~~l~~H~~~H~~~~~~~C-----~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~--C~~~f~f~~~~~l~~H~~~-H   75 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRC-----KDCSAAYDTLVELTVHMNETGHYRDDNHETDNN--NPKRWSKPRKRSLLEMEGK-E   75 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEB-----SSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCC--CCSCCSSCCCCCCCCCCCS-C
T ss_pred             chhhhhheeeeCCCCCEEC-----CccCchhcCHHHHHHHHHHhCccccCCCccCCC--CCcccccccHHHHHHHhhc-c
Confidence            4567889999999999999     8999999999999999998  88888765 988  99998  889999999887 6


Q ss_pred             CCCCCccc
Q 027872           99 PGHMSDEN  106 (217)
Q Consensus        99 ~~~~~~~~  106 (217)
                      .+..+..+
T Consensus        76 ~~~~~~~C   83 (115)
T 2dmi_A           76 DAQKVLKC   83 (115)
T ss_dssp             CCCSSCBC
T ss_pred             CCCcceEC
Confidence            66655433

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.09  E-value=6.8e-11  Score=66.86  Aligned_cols=37  Identities=16%  Similarity=0.327  Sum_probs=32.9

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |++++||.|  +.|++.|.+.+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTC--SFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEEC--TTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceEC--CCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            789999999  5799999999999999999988887754

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.8e-12  Score=74.50  Aligned_cols=40  Identities=33%  Similarity=0.617  Sum_probs=32.0

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~h~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2elz_A            2 SSGSSGSVEKPYKCED--CGKGYNRRLNLDMHQRV-HMGEKTS   41 (46)
T ss_dssp             CCCSCCCCCSSCBCSS--SCCBCSSHHHHHHHGGG-GGSCCCC
T ss_pred             CCCCCCCCCCCeeCcc--cCchhCCHHHHHHHHHh-cCCCCCC
Confidence            4778888899999988  99999999999999887 5555543

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.08  E-value=2.2e-11  Score=76.21  Aligned_cols=36  Identities=25%  Similarity=0.605  Sum_probs=32.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      |++|+|+|||.|  ++||++|.+.++|..|+++|++++
T Consensus        24 ~~~Ht~ekp~~C--~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           24 RRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             HHHHHTCCCEEC--TTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             HHHhCCCcCeEC--CCCCCCcCCHHHHHHHhCccCCCC
Confidence            478999999999  589999999999999999998763

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.06  E-value=3.2e-12  Score=78.02  Aligned_cols=37  Identities=19%  Similarity=0.335  Sum_probs=22.6

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAA   40 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~   40 (217)
                      ++|++++||.|  +.|++.|.+.+.|..|+++|++++||
T Consensus        17 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A           17 SRSQSEQPATC--PICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             HHHTSSCCEEC--TTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             HhcCCCCCccC--CCCCcccCCHHHHHHHHHHhccCCCC
Confidence            45666666666  35666666666666666666555554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.8e-10  Score=65.99  Aligned_cols=39  Identities=26%  Similarity=0.513  Sum_probs=34.0

Q ss_pred             ccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           63 VYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        63 H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      |+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         1 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   39 (42)
T 2yte_A            1 GSSGSSGEKPYSCAE--CKETFSDNNRLVQHQKM-HTVKSGP   39 (42)
T ss_dssp             CCSSSCSCCSCBCTT--TCCBCSSHHHHHHHHHH-TSCCSSC
T ss_pred             CCcCcCCCCCeECCC--CCCccCCHHHHHHHHHH-hCCCCCC
Confidence            678899999999998  99999999999999987 6665543

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.9e-10  Score=66.77  Aligned_cols=40  Identities=20%  Similarity=0.469  Sum_probs=35.2

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSK--CDRVFTQRNYLVQHERT-HARKSGP   41 (44)
T ss_dssp             CCSCCCSCCCSEECSS--SSCEESSSHHHHHHHHH-CCCCCSS
T ss_pred             CCccccCCCCCeECCC--CCchhCCHHHHHHHhHh-cCCCCCC
Confidence            5889999999999998  99999999999999987 6665543

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.8e-12  Score=74.86  Aligned_cols=40  Identities=28%  Similarity=0.547  Sum_probs=33.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLARHRRV-HTGGKPS   41 (46)
T ss_dssp             CCCCCCCCCSSEECSS--SCCEESSSHHHHHHTHH-HHSCCCS
T ss_pred             CcCcCCCCCCCeECCc--CCchhCCHHHHHHHHHh-cCCCCCC
Confidence            5788899999999988  99999999999999987 4554443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=99.05  E-value=8e-11  Score=69.62  Aligned_cols=38  Identities=24%  Similarity=0.629  Sum_probs=33.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      +.+|++++||.|.|+.|++.|.+.++|..|+++|++++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            35799999999965589999999999999999998753

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.05  E-value=1.5e-10  Score=63.56  Aligned_cols=35  Identities=23%  Similarity=0.433  Sum_probs=32.1

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNA   39 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp   39 (217)
                      +|++++||.|  +.|++.|.+...|..|+++|++++|
T Consensus         1 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVC--ALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEEC--SSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeEC--CCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6999999999  5899999999999999999987664

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.05  E-value=1.8e-10  Score=66.08  Aligned_cols=39  Identities=31%  Similarity=0.558  Sum_probs=33.8

Q ss_pred             ccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           63 VYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        63 H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      |+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         1 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   39 (42)
T 2el5_A            1 GSSGSSGENPYECSE--CGKAFNRKDQLISHQRT-HAGESGP   39 (42)
T ss_dssp             CCSSSSSCCSEECSS--SCCEESSHHHHHHHHGG-GCCCCSC
T ss_pred             CCCCCCCCCCccCCC--cChhhCCHHHHHHHHHh-cCCCCCC
Confidence            678899999999998  99999999999999987 5555543

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.4e-10  Score=66.98  Aligned_cols=40  Identities=30%  Similarity=0.492  Sum_probs=35.0

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAE--CGKAFTIRSNLIKHQKI-HTKQKPS   41 (46)
T ss_dssp             CSSCTTSSCCSEECSS--SCCEESSHHHHHHHHHH-TSCCCCS
T ss_pred             CcccCCCCCcCeECCC--CChhhCCHHHHHHHHHH-cCCCCCC
Confidence            6889999999999998  99999999999999987 6665554

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2e-10  Score=67.32  Aligned_cols=41  Identities=29%  Similarity=0.541  Sum_probs=35.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||+|.+  |++.|.+.+.|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2ytp_A            2 SSGSSGTGERHYECSE--CGKAFARKSTLIMHQRI-HTGEKPSG   42 (46)
T ss_dssp             CCCCSSCCCCCEECSS--SCCEESSHHHHHHHHTT-TSCCCCCS
T ss_pred             CcccCcCCCCCeECCc--CCcccCCHHHHHHHHHH-hCCCCCCC
Confidence            5889999999999998  99999999999999987 66665543

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.04  E-value=2.1e-10  Score=72.88  Aligned_cols=42  Identities=33%  Similarity=0.546  Sum_probs=36.0

Q ss_pred             CCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCccccc
Q 027872           67 ASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAE  108 (217)
Q Consensus        67 H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~~~~  108 (217)
                      ++|+|||+|.+++|+|+|++.++|.+|+++.|++.+|..+..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            489999999766699999999999999865699988876544

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.6e-10  Score=66.01  Aligned_cols=40  Identities=30%  Similarity=0.614  Sum_probs=35.2

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2eof_A            2 SSGSSGTGEKPYECNE--CQKAFNTKSNLMVHQRT-HTGESGP   41 (44)
T ss_dssp             CCSSCCSCCCSEECTT--TCCEESCHHHHHHHHHH-TTTSSCS
T ss_pred             CCccCCCCCCCeECCC--CCcccCCHhHHHHHHHH-hCCCCCC
Confidence            5889999999999999  99999999999999987 6665543

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.04  E-value=1.9e-10  Score=63.18  Aligned_cols=35  Identities=14%  Similarity=0.309  Sum_probs=32.0

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNA   39 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp   39 (217)
                      +|++++||.|  ..|++.|.+...|..|+++|++++|
T Consensus         1 ~H~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVC--RICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEEC--SSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeC--CCCCcccCCHHHHHHHHHHcCCCCC
Confidence            6999999999  5799999999999999999987664

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.1e-11  Score=73.07  Aligned_cols=42  Identities=29%  Similarity=0.529  Sum_probs=34.2

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|++..|.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~~~k~~~   43 (47)
T 2epx_A            2 SSGSSGTGKKPYECIE--CGKAFIQNTSLIRHWRYYHTGEKPSG   43 (47)
T ss_dssp             CCCCCCCCCCSBCCSS--SCCCBSSHHHHHHHHTTTTTTSCSSS
T ss_pred             ccccccCCCCCEECCc--cCchhCChHHHHHHhHhhcCCCCCCC
Confidence            5788899999999988  99999999999999982366666543

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.1e-10  Score=67.18  Aligned_cols=41  Identities=32%  Similarity=0.549  Sum_probs=35.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~~   42 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAE--CGKAFTDRSNLFTHQKI-HTGEKPSG   42 (46)
T ss_dssp             CCCSSSSCCCSEECSS--SCCEESSHHHHHHHHTT-TTTSCCCC
T ss_pred             CCCCCCCCCCCeECCC--CCchhCCHHHHHHHHHH-cCCCCCCC
Confidence            6889999999999998  99999999999999987 66655543

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.3e-10  Score=66.42  Aligned_cols=39  Identities=36%  Similarity=0.614  Sum_probs=34.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|..|+++ |.+..+
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~   40 (44)
T 2epv_A            2 SSGSSGSGEKPYECNE--CGKAFIWKSLLIVHERT-HAGVSG   40 (44)
T ss_dssp             CCCCCCCCCCSEECSS--SCCEESSHHHHHHHHGG-GSSCSC
T ss_pred             CCCcccCCCcCeECCC--CCcccCchHHHHHHHhH-hcCCCC
Confidence            5889999999999999  99999999999999987 555544

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5.1e-12  Score=74.41  Aligned_cols=40  Identities=28%  Similarity=0.497  Sum_probs=33.2

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~h~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCME--CGKAFGDNSSCTQHQRL-HTGQRPS   41 (46)
T ss_dssp             CSCCCCSSCCSSSBTT--TTBCCSSHHHHHHHHHH-HHSCCCC
T ss_pred             CCCcCCCCCCCcCCCC--CCchhCCHHHHHHHHHH-cCCCCCC
Confidence            4788899999999988  99999999999999987 4554443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.03  E-value=1.5e-11  Score=81.50  Aligned_cols=60  Identities=22%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCC---CCCcccCCCCcccccccCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATP---PERITKTPKPPAGVYGSAS   68 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~---~~~~~~~~~~l~~H~~~H~   68 (217)
                      +++|++++||.|.++.|++.|.+...|..|+++|++   |.|     ..   |++.|.+...|.+|+++|+
T Consensus        23 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C-----~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           23 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC-----KKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             HHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EEC-----CSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             HHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCC-----CCCCCCCCccCCHHHHHHHHHhcC
Confidence            367899999999422399999999999999999998   877     77   9999999999999998874

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.2e-10  Score=67.15  Aligned_cols=41  Identities=29%  Similarity=0.605  Sum_probs=35.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||+|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSD--CGKAFTRKSGLHIHQQS-HTGERHSG   42 (46)
T ss_dssp             CCCCCCCSCCCEECSS--SCCEESSHHHHHHHHHH-HTCCCBTT
T ss_pred             CcccccCCCCCEECcc--cCCccCCHhHHHHHHHH-cCCCCCCC
Confidence            6889999999999999  99999999999999988 55555443

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.2e-10  Score=67.08  Aligned_cols=41  Identities=27%  Similarity=0.498  Sum_probs=35.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLVRHRGI-HTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCCSCBCSS--SCCBCSSHHHHHHHHTT-TTTSSCCC
T ss_pred             CCCcCCCCCcCeECCC--CCcccCCHHHHHHHHHh-hCCCCCCC
Confidence            5888999999999998  99999999999999987 66655543

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.6e-10  Score=66.82  Aligned_cols=41  Identities=32%  Similarity=0.566  Sum_probs=35.5

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      .|+++|++++||+|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKE--CRKTFIQIGHLNQHKRV-HTGERSSG   42 (46)
T ss_dssp             CCCCSCCCSCSCCCSS--SCCCCSSHHHHHHHHHH-CSSCCSCS
T ss_pred             CCCCCcCCCCCcCCCC--cCchhCCHHHHHHHHHH-hCCCCCCC
Confidence            4788999999999998  99999999999999987 66666544

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.6e-10  Score=66.72  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=34.3

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKE--CGKSFSRAPCLLKHERL-HSGEKPS   41 (46)
T ss_dssp             CCCCCSSCCCCCCBTT--TTBCCSCHHHHHHHHHH-CCSSSCC
T ss_pred             CCcccCCCCCCeECCC--CCCccCchHHHHHHHHh-cCCCCCC
Confidence            5888999999999998  99999999999999987 6665543

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.8e-10  Score=67.51  Aligned_cols=40  Identities=30%  Similarity=0.593  Sum_probs=35.0

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRV-HTQETLS   41 (46)
T ss_dssp             CSCCCCSSCCSEEETT--TTEEESSHHHHHHHHHH-HSSCCSS
T ss_pred             CccccCCCCCCeECcc--cChhhCCHHHHHHHHHH-hCCCCCC
Confidence            6889999999999999  99999999999999988 5555543

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.02  E-value=2.4e-10  Score=67.02  Aligned_cols=40  Identities=25%  Similarity=0.534  Sum_probs=35.0

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emj_A            2 SSGSSGTGEKPFECAE--CGKSFSISSQLATHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCCSEECSS--SSCEESSHHHHHHHHHH-HTTSCSS
T ss_pred             CCCCCCCCCCCEECCC--CCcccCCHHHHHHHHHH-hCCCCCC
Confidence            5889999999999998  99999999999999988 5555544

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=3.1e-10  Score=66.38  Aligned_cols=41  Identities=27%  Similarity=0.585  Sum_probs=35.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+...|..|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSE--CQKAFNTKSNLIVHQRT-HTGEKPSG   42 (46)
T ss_dssp             CCCCSSCCCCSEECSS--SCCEESSHHHHHHHHHT-SCSSSSSC
T ss_pred             CCCCCCCCCCCcCCCC--CCcccCCHHHHHHHHHH-hCCCCCCC
Confidence            5889999999999998  99999999999999987 66665543

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.02  E-value=2.3e-10  Score=67.11  Aligned_cols=40  Identities=30%  Similarity=0.565  Sum_probs=34.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emk_A            2 SSGSSGTGEKPYECKE--CGKAFSQTTHLIQHQRV-HTGEKPS   41 (46)
T ss_dssp             CCCCCCSSSCSCBCSS--SCCBCSCHHHHHHHHHH-HSSCCCS
T ss_pred             CCCCccCCCCceECCC--CCchhCCHHHHHHHHHH-cCCCCCC
Confidence            6889999999999998  99999999999999988 5555543

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.8e-10  Score=66.67  Aligned_cols=40  Identities=33%  Similarity=0.675  Sum_probs=34.3

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eml_A            2 SSGSSGTGEKPYECSV--CGKAFSHRQSLSVHQRI-HSGKKPS   41 (46)
T ss_dssp             CCCCCCSSCCSEECSS--SCCEESSHHHHHHHHGG-GSSCCCS
T ss_pred             CccCCcCCCCCeeCCC--cCCccCCHHHHHHHHHH-hcCCCCC
Confidence            6888999999999998  99999999999999987 5555543

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.7e-10  Score=66.72  Aligned_cols=40  Identities=33%  Similarity=0.638  Sum_probs=35.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2em3_A            2 SSGSSGTGEKPYECKV--CSKAFTQKAHLAQHQKT-HTGEKPS   41 (46)
T ss_dssp             CCCCCCSSCCSEECSS--SCCEESSHHHHHHHHHH-HCCCCCC
T ss_pred             CCCCCCCCCcCeECCC--CCcccCCHHHHHHHHHH-hCCCCCC
Confidence            6889999999999999  99999999999999988 5555544

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.5e-10  Score=66.22  Aligned_cols=40  Identities=28%  Similarity=0.639  Sum_probs=34.7

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSI--CGKSFTKKSQLHVHQQI-HTGEKPS   41 (46)
T ss_dssp             CSSSCSSCCCSEECSS--SCCEESSHHHHHHHHHT-TSSCCSC
T ss_pred             CCCCCCCCCcCcCCCC--CCcccCCHHHHHHHHHH-hCCCCCC
Confidence            5888999999999998  99999999999999987 6665554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.7e-10  Score=66.70  Aligned_cols=41  Identities=29%  Similarity=0.559  Sum_probs=35.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNE--CGKAFRARSSLAIHQAT-HSGEKPSG   42 (46)
T ss_dssp             CCCCCSCCCCCEECTT--SCCEESSHHHHHHHHHH-HCCCSCSC
T ss_pred             CccCCCCCCCCeeccc--cCChhcCHHHHHHHHHH-cCCCCCCC
Confidence            5889999999999998  99999999999999987 55555443

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.7e-10  Score=66.64  Aligned_cols=41  Identities=29%  Similarity=0.593  Sum_probs=35.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~p~~   42 (46)
T 2yts_A            2 SSGSSGTGEKPYICNE--CGKSFIQKSHLNRHRRI-HTGEKPSG   42 (46)
T ss_dssp             CCSCCCCSCCSEECSS--SCCEESSHHHHHHHGGG-TSSCCSSC
T ss_pred             CCCCCCCCCcCEECCC--CChhhCChHHHHHHHHh-cCCCCCcC
Confidence            5888999999999998  99999999999999987 66665543

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.6e-10  Score=66.31  Aligned_cols=39  Identities=36%  Similarity=0.729  Sum_probs=33.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+
T Consensus         1 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~   39 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQ--CGKAFSQKGSLIVHIRV-HTGSGP   39 (42)
T ss_dssp             CCCCCCCSCCSBCCTT--TTCCBSSHHHHHTTGGG-TSCCSC
T ss_pred             CCccccCCCCCeeCCC--ccchhCCHHHHHHHHHH-hCCCCC
Confidence            4788899999999998  99999999999999987 655544

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.8e-10  Score=66.68  Aligned_cols=41  Identities=27%  Similarity=0.539  Sum_probs=35.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEE--CGKRFTQNSHLHSHQRV-HTGEKPSG   42 (46)
T ss_dssp             CCCSCCCCSSSBCCSS--SCCCBSSHHHHHHHGGG-GTTCCCSS
T ss_pred             CcccCCCCCcCCCCCC--CCcccCCHHHHHHHHHh-cCCCCCCC
Confidence            6888999999999998  99999999999999987 56655543

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.01  E-value=3.1e-10  Score=66.39  Aligned_cols=40  Identities=25%  Similarity=0.547  Sum_probs=33.9

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQ--CAKTFSLKSQLIVHQRS-HTGVKPS   41 (46)
T ss_dssp             CCCCCSCCCCSEECSS--SSCEESSHHHHHHHGGG-SSSCCCS
T ss_pred             ccccCCCCCCceECCC--CCchhCCHHHHHHHHHH-hCCCCCC
Confidence            5888899999999988  99999999999999987 6665544

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3e-10  Score=66.49  Aligned_cols=40  Identities=25%  Similarity=0.492  Sum_probs=33.8

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eop_A            2 SSGSSGTGEKPHECRE--CGKSFSFNSQLIVHQRI-HTGENPS   41 (46)
T ss_dssp             CCCCSCCCCCSCBCTT--TCCBCSSHHHHHHHHTT-TTTSCCS
T ss_pred             CCccccCCCCCeeCCC--CCchhCCHHHHHHHHHH-cCCCCCC
Confidence            5888899999999988  99999999999999987 6665543

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2e-10  Score=67.33  Aligned_cols=40  Identities=40%  Similarity=0.559  Sum_probs=34.7

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|..|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKR-HFREKSS   41 (46)
T ss_dssp             CCCCCCSCCCCEECSS--SCCEESSHHHHHHHHHH-HHSTTSS
T ss_pred             CCCCCCCCCCCEEccc--cCcccCCHHHHHHHHHH-HcCCCCC
Confidence            6889999999999998  99999999999999988 5554443

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.9e-10  Score=66.56  Aligned_cols=40  Identities=30%  Similarity=0.527  Sum_probs=34.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emm_A            2 SSGSSGTGERPHKCNE--CGKSFIQSAHLIQHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCSCSSCCCSEECSS--SCCEESSHHHHHHHHHH-HSCCCTT
T ss_pred             CCcCCcCCCCCeeCCC--CChhhCCHHHHHHHHHH-hCCCCCC
Confidence            5889999999999998  99999999999999988 5555543

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.2e-10  Score=66.40  Aligned_cols=40  Identities=33%  Similarity=0.615  Sum_probs=34.9

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emi_A            2 SSGSSGTGERHYECSE--CGKAFIQKSTLSMHQRI-HRGEKPS   41 (46)
T ss_dssp             CCCCSCSSCCCEECSS--SCCEESSHHHHHHHHGG-GCSCCCC
T ss_pred             CCCcccCCCCCCCCCC--CCcccCCHHHHHHHHhH-hCCCCCC
Confidence            5889999999999998  99999999999999987 5565544

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2.9e-10  Score=66.66  Aligned_cols=41  Identities=29%  Similarity=0.532  Sum_probs=35.3

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2em4_A            2 SSGSSGTGQRPYECIE--CGKAFKTKSSLICHRRS-HTGEKPSG   42 (46)
T ss_dssp             CSCCCCCCSSSEECSS--SCCEESSHHHHHHHHHH-HSSSSCCC
T ss_pred             CCccccCCCcCcCCCC--CCCccCCHHHHHHHHHh-cCCCCCCC
Confidence            5889999999999998  99999999999999988 55555443

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.3e-10  Score=66.31  Aligned_cols=41  Identities=29%  Similarity=0.564  Sum_probs=35.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGE--CGKAFAQKANLTQHQRI-HTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCCCEECSS--SCCEESSHHHHHHHHTT-TSSCCSSC
T ss_pred             CCccCCCCCCCeECCC--CCCccCCHHHHHHHHHH-cCCCCCCC
Confidence            5889999999999998  99999999999999987 66655543

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.00  E-value=2.7e-10  Score=66.75  Aligned_cols=40  Identities=28%  Similarity=0.499  Sum_probs=34.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNE--CGKVFSRNSQLSQHQKI-HTGEKPS   41 (46)
T ss_dssp             CSCSSCTTSCCEECSS--SCCEESSHHHHHHHHTG-GGCCCCC
T ss_pred             CCccCCCCCcCcCCCC--CcchhCCHHHHHHHHHh-cCCCCCC
Confidence            5888999999999998  99999999999999987 5555543

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.8e-10  Score=65.91  Aligned_cols=40  Identities=28%  Similarity=0.532  Sum_probs=34.7

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNE--CGKAFRSKSYLIIHTRT-HTGESGP   41 (44)
T ss_dssp             CSCCCSSSSSSSCCTT--TCCCCSSHHHHHHHHTT-TCCSSSS
T ss_pred             CCCcCCCCCcCeECCC--CCCccCCHHHHHHHhhh-cCCCCCC
Confidence            5888999999999998  99999999999999987 6665543

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.00  E-value=4.1e-10  Score=64.48  Aligned_cols=38  Identities=26%  Similarity=0.509  Sum_probs=33.9

Q ss_pred             ccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           63 VYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        63 H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      |+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+
T Consensus         2 H~~~H~~~~~~~C~~--C~k~f~~~~~l~~H~~~-H~~~k~   39 (42)
T 2epc_A            2 SSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRS-CSQSGP   39 (42)
T ss_dssp             CCSCCCSSCCEECSS--SCCEESSHHHHHHHHHH-TTCCCC
T ss_pred             CCccCCCCCCeECCC--CCcccCCHHHHHHHhhh-cCCCCC
Confidence            788999999999999  99999999999999987 666554

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3e-10  Score=66.55  Aligned_cols=41  Identities=29%  Similarity=0.505  Sum_probs=35.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNE--CGKAFRAHSNLTTHQVI-HTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCSCCCCCTT--TTCCCSSHHHHHHHHTT-TCCSCCSS
T ss_pred             CcccccCCCCCeECCc--CChhhCCHHHHHHHHHH-hCCCCCCC
Confidence            5888999999999998  99999999999999987 66655543

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.7e-10  Score=66.02  Aligned_cols=39  Identities=31%  Similarity=0.548  Sum_probs=34.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~   40 (44)
T 2eoj_A            2 SSGSSGTGENPYECCE--CGKVFSRKDQLVSHQKT-HSGQSG   40 (44)
T ss_dssp             CSCCSSSSCCSCEETT--TTEECSSHHHHHHHHTT-SSSSCS
T ss_pred             CCccccCCCcCeeCCC--CCCccCCHHHHHHHHHH-cCCCCC
Confidence            5889999999999998  99999999999999987 665544

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.00  E-value=3.1e-10  Score=63.13  Aligned_cols=34  Identities=29%  Similarity=0.730  Sum_probs=31.5

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhh
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      .|+++|++++||.|..  |++.|.+...|.+|+++|
T Consensus         1 ~H~~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CCSSTTCCSSSBCCTT--TCCCBSSHHHHHHHHGGG
T ss_pred             CCCCcCCCCCCccCCC--CCcccCcHHHHHHHHHHh
Confidence            3788999999999998  999999999999999884

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.2e-10  Score=65.83  Aligned_cols=40  Identities=25%  Similarity=0.483  Sum_probs=34.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTE--CGKAFCWKSQLIMHQRT-HVDDKHS   41 (46)
T ss_dssp             CCCCCCCCCCSEECSS--SCCEESSSHHHHHHHHH-CCSCCCS
T ss_pred             cCcccCCCCCCeeCCC--CCCccCCHHHHHHHHHH-hCCCCCC
Confidence            5888999999999998  99999999999999987 6665543

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.2e-10  Score=66.42  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=32.7

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNE--CGKVFTQNSHLARHRGI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCSCCSSCBCTT--TCCBCSSHHHHHHHGGG-TSCCCCC
T ss_pred             CCCcCCCCCcCeECCC--CCCeeCCHHHHHHHhhh-cCCCCCC
Confidence            5788889999999988  99999999999999877 5555543

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.1e-10  Score=66.53  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=33.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emf_A            2 SSGSSGTGGKHFECTE--CGKAFTRKSTLSMHQKI-HTGEKPS   41 (46)
T ss_dssp             CCCSSSSSSCCEECSS--SCCEESCHHHHHHHGGG-TSCSSCS
T ss_pred             ccccccCCCCCeECCC--CCchhCCHHHHHHHHHH-hCCCCCC
Confidence            4788899999999988  99999999999999987 5555543

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.7e-10  Score=66.70  Aligned_cols=41  Identities=27%  Similarity=0.508  Sum_probs=34.9

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLARHRGI-HTGEKPSG   42 (46)
T ss_dssp             CCCCCCSCCCTTCCSS--SCCCCSSHHHHHHHHTT-TSCSCCSS
T ss_pred             CCCcCCCCCcCeECCC--CCcccCChhHHHHHhHh-cCCCCCCC
Confidence            5888999999999998  99999999999999987 66655543

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.1e-10  Score=66.48  Aligned_cols=40  Identities=33%  Similarity=0.647  Sum_probs=34.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emy_A            2 SSGSSGTGENPYECHE--CGKAFSRKYQLISHQRT-HAGEKPS   41 (46)
T ss_dssp             CCCCCCCSSCCEECSS--SCCEESSHHHHHHHHHH-HTTSCCS
T ss_pred             CCCCCCCCCcCcCCCC--CCcccCcHHHHHHHHHH-cCCCCCC
Confidence            5889999999999998  99999999999999988 5555443

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.7e-10  Score=66.10  Aligned_cols=40  Identities=30%  Similarity=0.571  Sum_probs=34.0

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNE--CGKVFRHNSYLSRHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCSSCCCSSSEECSS--SCCEESSHHHHHHHHTT-TCCCCCC
T ss_pred             CcccCCCCCCCeECCC--CCchhCChHHHHHHHhh-cCCCCCC
Confidence            5888999999999998  99999999999999987 6665543

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.3e-10  Score=66.36  Aligned_cols=41  Identities=24%  Similarity=0.458  Sum_probs=35.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDV--CGKEFSQSSHLQTHQRV-HTGEKPSG   42 (46)
T ss_dssp             CCCSCCCCCCCCBCSS--SCCBCSSHHHHHHHHTT-TSSSCCCC
T ss_pred             CCccccCCCCCeECCC--CCcccCCHHHHHHHHHH-cCCCCCCC
Confidence            5888999999999998  99999999999999987 66665543

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.2e-10  Score=65.86  Aligned_cols=40  Identities=23%  Similarity=0.480  Sum_probs=34.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||+|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMV-HTAEKPS   41 (46)
T ss_dssp             CCCCCSSSSCSCCCSS--SCCCCSSHHHHHHHHHH-TTCCCSS
T ss_pred             CCCCCCCCCCCcCCCc--CCchhCCHHHHHHHHHH-cCCCCCC
Confidence            5888999999999998  99999999999999987 6665544

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.5e-10  Score=66.85  Aligned_cols=41  Identities=29%  Similarity=0.535  Sum_probs=34.5

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNE--CGKAFSQTSKLARHQRV-HTGEKPSG   42 (46)
T ss_dssp             CCCCSSSSSCSSSCCS--SCCCCSSHHHHHHHGGG-GCCCCCCC
T ss_pred             CcccccCCCCCeECCC--CCcccCCHHHHHHHHHH-cCCCCCCC
Confidence            5888999999999988  99999999999999987 56655443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=2.7e-10  Score=63.61  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHH-HHhhcC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNH-IASHHE   36 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H-~~~H~~   36 (217)
                      |++|++++||+|  +.|++.|.+...|..| +++|++
T Consensus         1 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            1 GSSGSSGHLYYC--SQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CCSSSSSCEEEC--SSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CCccCCCcCeEC--CCCCcccCCHHHHHHHHHHHccC
Confidence            689999999999  5899999999999999 999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3e-10  Score=66.45  Aligned_cols=41  Identities=29%  Similarity=0.641  Sum_probs=35.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSD--CGKSFIKKSQLHVHQRI-HTGENPSG   42 (46)
T ss_dssp             CCCCCCSSCCSSCCSS--SCCCCSSHHHHHHHHGG-GSSSCCCS
T ss_pred             ccccCCCCCCCcCCCC--CCchhCCHHHHHHHHHH-hCCCCCCC
Confidence            6889999999999998  99999999999999987 66655543

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=99.00  E-value=3.5e-10  Score=63.17  Aligned_cols=36  Identities=28%  Similarity=0.604  Sum_probs=31.8

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      .|++++||.|.++.|++.|.+.+.|..|+++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            589999999954469999999999999999998753

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.00  E-value=2.7e-10  Score=66.75  Aligned_cols=40  Identities=23%  Similarity=0.468  Sum_probs=32.9

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||+|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRE--CDMCFSQASSLRLHQNV-HVGEKPS   41 (46)
T ss_dssp             CCCCCSCCCCCCCCSS--SCCCCSSHHHHHHHGGG-GSSSSCS
T ss_pred             CCcCccCCCcCeECCC--CCcccCCHHHHHHHHHH-cCCCCCc
Confidence            5788889999999988  99999999999999887 5555543

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.7e-10  Score=66.10  Aligned_cols=40  Identities=28%  Similarity=0.502  Sum_probs=33.8

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHE--CGKVFRRNSHLARHQLI-HTGEKPS   41 (46)
T ss_dssp             CCCCCTTCCCCEECTT--TCCEESSHHHHHHHHTT-TCCCCCS
T ss_pred             CCCcCCCCCCCeECCC--CCchhCCHHHHHHHHHH-cCCCCCC
Confidence            5788899999999988  99999999999999887 6665544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=3.8e-10  Score=66.00  Aligned_cols=40  Identities=25%  Similarity=0.410  Sum_probs=34.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDE--CGKNFCYISALRIHQRV-HMGEKCS   41 (46)
T ss_dssp             CCCCCCCCCSSEECTT--TCCEESSHHHHHHHHTT-TCCSCSS
T ss_pred             CccccCCCCCCeECCC--cCcccCCHHHHHHHHHH-hCCCCCC
Confidence            5888999999999988  99999999999999987 6665543

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=3.6e-10  Score=65.49  Aligned_cols=40  Identities=20%  Similarity=0.382  Sum_probs=35.0

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|..|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (44)
T 2emb_A            2 SSGSSGHTRKRYECSK--CQATFNLRKHLIQHQKT-HAAKSGP   41 (44)
T ss_dssp             CCCSCCCCCSSEECTT--TCCEESCHHHHHHHGGG-GCCCCCT
T ss_pred             CcccccCCCCCeECCC--CCCccCCHHHHHHHHHH-cCCCCCc
Confidence            6889999999999998  99999999999999987 5665543

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.3e-10  Score=66.27  Aligned_cols=40  Identities=28%  Similarity=0.537  Sum_probs=33.8

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLANHQRI-HTGVKPS   41 (46)
T ss_dssp             CCSSCCCCCCSSEETT--TTEECSSHHHHHHHHGG-GSCCCSC
T ss_pred             CCCCCCCCCCCeECCC--cChhhCCHHHHHHHHHH-cCCCCCC
Confidence            5888899999999988  99999999999999987 5555543

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.8e-10  Score=66.06  Aligned_cols=41  Identities=29%  Similarity=0.581  Sum_probs=34.9

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~~   42 (46)
T 2emg_A            2 SSGSSGTGENPFICSE--CGKVFTHKTNLIIHQKI-HTGERPSG   42 (46)
T ss_dssp             CCCCCCCSCCSCBCTT--TCCBCSSHHHHHHHHTT-TSCCCCSC
T ss_pred             CCCCCCCCCCCEECCc--cCcccCCHHHHHHHHHH-hCCCCCCC
Confidence            5888999999999998  99999999999999987 66655543

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=4e-10  Score=65.97  Aligned_cols=40  Identities=33%  Similarity=0.553  Sum_probs=34.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSE--CGKAFHRHTHLNEHRRI-HTGYRPS   41 (46)
T ss_dssp             CCCCCSCCCCSEECSS--SCCEESSHHHHHHHHHH-HTCCCSS
T ss_pred             CCccccCCCcCeECCC--CCCeeCChHHHHHHHHH-cCCCCCC
Confidence            5889999999999998  99999999999999987 5555543

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=4.7e-10  Score=65.59  Aligned_cols=40  Identities=35%  Similarity=0.610  Sum_probs=33.9

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDY--CGKAFGLSAELVRHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCCTTCCCCSEECSS--SCCEESSHHHHHHHHGG-GCCCSCC
T ss_pred             CCCCCCCCCCCeECCC--CChhhCCHHHHHHHHHh-cCCCCCC
Confidence            6888999999999998  99999999999999987 5555443

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=3.5e-10  Score=65.54  Aligned_cols=39  Identities=28%  Similarity=0.565  Sum_probs=33.4

Q ss_pred             ccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           63 VYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        63 H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      |+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         1 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   39 (44)
T 2emx_A            1 GSSGSSGEKPFGCSC--CEKAFSSKSYLLVHQQT-HAEEKPS   39 (44)
T ss_dssp             CCCCCSSCCCEECSS--SSCEESSHHHHHHHHHH-HTSSCSC
T ss_pred             CCCCcCCCcCccCCC--CCcccCCHHHHHHHHHH-hCCCCCC
Confidence            678899999999998  99999999999999988 5555443

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=4.4e-10  Score=65.83  Aligned_cols=40  Identities=23%  Similarity=0.402  Sum_probs=34.3

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCSCSEECSS--SCCEESSHHHHHHHHTT-TSCSCCS
T ss_pred             CCcCCCCCCCCeECCc--CCCccCCHHHHHHHHHH-hCCCCCC
Confidence            6888999999999998  99999999999999987 6665543

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.7e-10  Score=66.14  Aligned_cols=40  Identities=30%  Similarity=0.575  Sum_probs=34.5

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNE--CGKVFTQNSHLTNHWRI-HTGEKPS   41 (46)
T ss_dssp             CCCCCSSSSCSEECSS--SCCEESSHHHHHHHHHH-HSSSSCS
T ss_pred             CCcccCCCCCCEeCCc--CCCccCCHHHHHHHHHH-HCCCCCC
Confidence            6889999999999998  99999999999999987 5555543

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.7e-10  Score=66.07  Aligned_cols=39  Identities=31%  Similarity=0.664  Sum_probs=33.7

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSD--CGKSFTWKSRLRIHQKC-HTGERH   40 (46)
T ss_dssp             CCCCCCSSCCSCBCSS--SCCBCSSHHHHHHHHHH-HSCCSS
T ss_pred             CCCCCCCCCCCccCCc--cChhhCCHHHHHHHHHh-cCCCCC
Confidence            6889999999999998  99999999999999987 445444

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.8e-10  Score=66.02  Aligned_cols=41  Identities=29%  Similarity=0.518  Sum_probs=35.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+..
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQ--CGKAFSVRSSLTTHQAI-HTGKKPSG   42 (46)
T ss_dssp             CCCCSSCCCCSSEETT--TTEECSSHHHHHHHHTT-SCCCCCCC
T ss_pred             CcccCCCCCCCeECCC--CChhhCCHHHHHHHHHH-hCCCCCCC
Confidence            5889999999999998  99999999999999987 66665543

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.98  E-value=3.6e-10  Score=62.88  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=31.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++
T Consensus         3 ~~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            3 TRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCSSSBCC--TTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCcCCCCCCccC--CCCCcccCcHHHHHHHHHHhcc
Confidence            589999999999  5799999999999999999975

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.7e-10  Score=66.73  Aligned_cols=40  Identities=35%  Similarity=0.600  Sum_probs=34.4

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emh_A            2 SSGSSGTGERPYICTV--CGKAFTDRSNLIKHQKI-HTGEKPS   41 (46)
T ss_dssp             CCCCSCSCCCSEECTT--TCCEESSHHHHHHHHHH-HHCSSCS
T ss_pred             CCCCCCCCCCCcCCCC--CCchhCCHHHHHHHHHh-cCCCCCC
Confidence            6889999999999998  99999999999999987 4554443

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.9e-10  Score=66.55  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=34.5

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNE--CGKAFSVYSSLTTHQVI-HTGEKPS   41 (46)
T ss_dssp             CCCSCSSCCCSEECSS--SCCEESCHHHHHHHHHH-HHCCSCC
T ss_pred             CcccccCCCcCeECCC--CCchhCCHHHHHHHHHH-cCCCCCC
Confidence            6889999999999998  99999999999999988 4554443

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.9e-10  Score=66.07  Aligned_cols=40  Identities=20%  Similarity=0.484  Sum_probs=34.7

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~h~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNE--CKKTFTQSSSLTVHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCSSCCSSCCCBCTT--TCCBCSSHHHHHHHHHH-HTSSCCC
T ss_pred             CCCCCCCCCCCEECCc--cCcccCCHHHHHHHHHH-cCCCCCC
Confidence            5889999999999998  99999999999999988 5555544

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.6e-10  Score=66.14  Aligned_cols=40  Identities=33%  Similarity=0.586  Sum_probs=32.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNE--CGKAFSQTSKLARHQRI-HTGEKPS   41 (46)
T ss_dssp             CSSCCCSSCCTTCCTT--TCCCCSSHHHHHHHHTT-TTTCSCC
T ss_pred             CCCcCCCCCcCcCCCC--CCCccCCHHHHHHHHHh-cCCCCCC
Confidence            5788889999999988  99999999999999887 5555443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=4.7e-10  Score=62.45  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=32.5

Q ss_pred             CcccCCCCceecCCCCCCccccCh-hhHHHHHHhhcCCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHE-YKLKNHIASHHEKN   38 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~-~~L~~H~~~H~~~k   38 (217)
                      .++|++++||+|  +.|++.|.+. ..|..|+++|++++
T Consensus         1 ~~~h~~~k~~~C--~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            1 GSSGSSGRAMKC--PYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCSCCCCCCEEC--SSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCeEC--CCCChhhccCHHHHHHHHHhcCCCC
Confidence            378999999999  5799999999 99999999998753

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3.4e-10  Score=64.95  Aligned_cols=39  Identities=38%  Similarity=0.735  Sum_probs=33.8

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+
T Consensus         1 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~   39 (42)
T 2eos_A            1 GSSGSSGGEKPYPCEI--CGTRFRHLQTLKSHLRI-HTGSGP   39 (42)
T ss_dssp             CCCSCCSSSCCBCCSS--SCCCBSSHHHHHHHTTT-TSCCSS
T ss_pred             CCCcccCCCCCEECCC--CCCccCCHHHHHHHHHh-cCCCCC
Confidence            3788999999999998  99999999999999987 555544

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.5e-10  Score=65.49  Aligned_cols=39  Identities=31%  Similarity=0.672  Sum_probs=33.8

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+
T Consensus         1 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~   39 (42)
T 2en2_A            1 GSSGSSGGEKPYKCET--CGARFVQVAHLRAHVLI-HTGSGP   39 (42)
T ss_dssp             CCCCCCCSSCSEECTT--TCCEESSHHHHHHHTHH-HHSCCS
T ss_pred             CCCcccCCCCCEeCCC--cChhhCCHHHHHHHHHH-cCCCCC
Confidence            3788999999999998  99999999999999987 555443

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.97  E-value=4.7e-10  Score=65.60  Aligned_cols=40  Identities=28%  Similarity=0.501  Sum_probs=33.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKE--CGKSFRWASCLLKHQRV-HSGEKPS   41 (46)
T ss_dssp             CSCCSCCCCCSEECSS--SCCEESSHHHHHHHGGG-GTSCCCC
T ss_pred             CCCCCCCCCcCeECCc--cccccCChHHHHHHHHH-hCCCCCC
Confidence            5888999999999988  99999999999999887 5555543

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.4e-10  Score=66.92  Aligned_cols=40  Identities=23%  Similarity=0.434  Sum_probs=34.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKE--CGMNFSWSCSLFKHLRS-HERTDPS   41 (46)
T ss_dssp             CCCCCSCCCCSEECSS--SCCEESSSHHHHHHHHH-HHHSCCS
T ss_pred             ccccccCCCCCeeCcc--cChhhCCHHHHHHHHHH-hCCCCCC
Confidence            5889999999999999  99999999999999988 4444443

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=5.1e-10  Score=65.50  Aligned_cols=40  Identities=28%  Similarity=0.532  Sum_probs=32.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2epz_A            2 SSGSSGTGEKPFDCID--CGKAFSDHIGLNQHRRI-HTGEKPS   41 (46)
T ss_dssp             CCCSSCCCCCSBCCTT--TCCCBSSHHHHHHHHTT-TTTCCCC
T ss_pred             CCCCCcCCCCCeECCC--CCceeCCHHHHHHHHHH-hCCCCCC
Confidence            4788889999999988  99999999999999887 5555543

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.8e-10  Score=65.30  Aligned_cols=40  Identities=30%  Similarity=0.641  Sum_probs=33.0

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSE--CGKAFSSKSYLIIHMRT-HSGEKPS   41 (46)
T ss_dssp             CCSSCSSCCCSCBCSS--SCCBCSCHHHHHHHHTT-TCCSCSS
T ss_pred             CCCcCcCCCCCcCCCc--cChhhCChHHHHHHHHH-hCCCCCC
Confidence            4788889999999988  99999999999999887 6665543

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.6e-10  Score=65.70  Aligned_cols=40  Identities=28%  Similarity=0.565  Sum_probs=33.5

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEE--CGKRFTQNSQLHSHQRV-HTGEKPS   41 (46)
T ss_dssp             CSTTCCCCCCSEEETT--TTEEESSHHHHHHHGGG-GSCCCCS
T ss_pred             CcccCCCCCCCeeCCC--CCcccCCHHHHHHHHHH-cCCCCCC
Confidence            5888899999999988  99999999999999987 5555543

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.96  E-value=6.4e-10  Score=65.12  Aligned_cols=40  Identities=25%  Similarity=0.525  Sum_probs=33.9

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~h~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRM-HTREKPS   41 (46)
T ss_dssp             CSCCSSCCCCSEECSS--SSCEESSHHHHHHHHGG-GCCSSCC
T ss_pred             CCCCCCCCCCCeECCC--CCcccCCHHHHHHHHHH-cCCCCCC
Confidence            5788999999999998  99999999999999987 5555543

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.7e-10  Score=66.04  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=34.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      +|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~   40 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNE--CGKAFTRIFHLTRHQKI-HTRKSG   40 (44)
T ss_dssp             CCCCCCCCCCCEEETT--TTEEESSSHHHHTTHHH-HCCCCC
T ss_pred             CCCcCCCCCCCeECcc--cCcccCCHHHHHHHHHH-hCCCCC
Confidence            5889999999999998  99999999999999988 555444

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=7.9e-10  Score=64.66  Aligned_cols=40  Identities=25%  Similarity=0.510  Sum_probs=34.5

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEE--CGKGFYTNSQCYSHQRS-HSGEKPS   41 (46)
T ss_dssp             CCSSCCCCCCSEECSS--SCCEESSHHHHHHHHHH-SCCSSCC
T ss_pred             CCCCCCCCCCCcCCCC--CCCcCCChHHHHHHHHH-hCCCCCC
Confidence            4788999999999998  99999999999999987 6665543

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4e-10  Score=65.94  Aligned_cols=40  Identities=35%  Similarity=0.698  Sum_probs=34.7

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~kp~   41 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEE--CGKAFIHDSQLQEHQRI-HTGEKPS   41 (46)
T ss_dssp             CSSSSSSCCCSEECTT--TCCEESSHHHHHHHHHH-HHSCCCS
T ss_pred             CCCcCcCCCcCccCCC--CCCCcCCHHHHHHHHHh-cCCCCCC
Confidence            5889999999999998  99999999999999988 5555543

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.6e-10  Score=65.70  Aligned_cols=40  Identities=30%  Similarity=0.582  Sum_probs=34.5

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~h~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNE--CGKTFSQKSILSAHQRT-HTGEKPS   41 (46)
T ss_dssp             CCSCCCCSSCCEEETT--TTEEESSHHHHHHHHHH-HSSCCCS
T ss_pred             CCCCccCCCcCeECCC--CCcccCchHHHHHHHHH-cCCCCCC
Confidence            5889999999999998  99999999999999998 5555543

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=6.3e-10  Score=65.14  Aligned_cols=40  Identities=33%  Similarity=0.611  Sum_probs=34.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKE--CGKAFRQNIHLASHLRI-HTGEKPS   41 (46)
T ss_dssp             CCCCSCCCCCSEECSS--SCCEESSHHHHHHHHHH-HCCCCSS
T ss_pred             CCCCCCCCCCCEECCc--CCchhCCHHHHHHHHHH-hCCCCCC
Confidence            4888999999999998  99999999999999988 5555543

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=5.6e-10  Score=65.38  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=34.2

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCC-CCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG-HMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~-~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+ ..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~~   42 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNK--CEKTFSCSKYLTQHERI-HTRGVKSG   42 (46)
T ss_dssp             CCCCCCCCSCCEECSS--SCCEESSSHHHHHHHTT-CCSCCTTS
T ss_pred             CCccccCCCCCEECcC--CCCcCCCHHHHHHHHHH-cCCCCCCC
Confidence            4788999999999998  99999999999999987 555 5543

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.5e-10  Score=65.84  Aligned_cols=41  Identities=29%  Similarity=0.509  Sum_probs=33.8

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQV--CGKAFRVSSHLVQHHSV-HSGERPSG   42 (46)
T ss_dssp             CCSSSCSSCCSCBCSS--SCCBCSSHHHHHHHTTT-TTSCCSCT
T ss_pred             CCCCCCCCCcccCCCC--CCcccCcHHHHHHHHHh-cCCCCCCC
Confidence            3788899999999988  99999999999999887 66655543

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.96  E-value=4.5e-10  Score=65.80  Aligned_cols=39  Identities=28%  Similarity=0.566  Sum_probs=31.0

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVE--CGKGFSRRSALNVHHKL-HTGEKP   40 (46)
T ss_dssp             CCCCCCCCCCSBCCSS--SCCCBSSTTHHHHHHHH-HSCCSS
T ss_pred             CCCCCCCCCCCcccCc--cCcccCCHHHHHHHHHH-cCCCCC
Confidence            4778888888888888  88888888888888887 445444

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=1.3e-10  Score=78.80  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=26.1

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      ..|.|.+  |++.|.....|.+|++++|.+..+
T Consensus        24 ~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~~   54 (95)
T 2ej4_A           24 LSRPKKS--CDRTFSTMHELVTHVTMEHVGGPE   54 (95)
T ss_dssp             SSSSCCC--CCCCCSSHHHHHHHHHHTTTCCTT
T ss_pred             CCCcccc--cccccCCHHHHHHHHHHhccCCCC
Confidence            4578988  999999999999999986777654

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=6.2e-10  Score=65.12  Aligned_cols=40  Identities=33%  Similarity=0.684  Sum_probs=33.9

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~~   41 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEK--CGKGYNSKFNLDMHQKV-HTGERPS   41 (46)
T ss_dssp             CCCCCCSSCCSEEETT--TTEEESCHHHHHHHHTT-SCSCCSS
T ss_pred             CCCcCCCCCCCeECCC--CCCccCCHHHHHHHHHh-hCCCCCC
Confidence            4788899999999988  99999999999999987 6665543

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=6.2e-10  Score=65.12  Aligned_cols=40  Identities=30%  Similarity=0.544  Sum_probs=33.2

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEE--CGKGFICRRDLYTHHMV-HTGEKPS   41 (46)
T ss_dssp             CCCCSSSCCCSEECSS--SCCEESCHHHHHHHGGG-GTTCCCS
T ss_pred             CCCCCCCCCcCccCCC--ccchhCCHHHHHHHHHH-hCCCCCC
Confidence            4788899999999988  99999999999999887 5555543

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.2e-10  Score=74.08  Aligned_cols=60  Identities=22%  Similarity=0.341  Sum_probs=49.5

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGC   80 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C   80 (217)
                      +++|++.|||.|.  .|++.|. ...|..|+ .|                                 .+++||.|..  |
T Consensus         9 ~~~~c~~r~~~C~--~C~~~~~-~~~L~~H~-~~---------------------------------c~~~~~~C~~--C   49 (75)
T 2d9k_A            9 EETECPLRLAVCQ--HCDLELS-ILKLKEHE-DY---------------------------------CGARTELCGN--C   49 (75)
T ss_dssp             CCCCCCCCCEECS--SSCCEEC-HHHHHHHH-HH---------------------------------HHHCEEECSS--S
T ss_pred             CcccCCCcccCCc--ccChHhh-HHHHHHHH-hH---------------------------------cCCCceEccc--C
Confidence            3578999999995  5999995 89999998 78                                 4678888988  9


Q ss_pred             cccccChHHHHHHHHhhCCCC
Q 027872           81 EKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        81 ~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      ++.|.+ ..|..|+++ |++.
T Consensus        50 ~~~~~~-~~l~~H~~~-c~~~   68 (75)
T 2d9k_A           50 GRNVLV-KDLKTHPEV-CGRE   68 (75)
T ss_dssp             CCEEET-TGGGTHHHH-BTTB
T ss_pred             CCcCcH-HHHHHHHHH-ccCC
Confidence            998884 899999987 5553

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.6e-10  Score=65.07  Aligned_cols=41  Identities=32%  Similarity=0.623  Sum_probs=33.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+..
T Consensus         2 ~h~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~~   42 (46)
T 2enh_A            2 SSGSSGTGEKPYECDV--CRKAFSHHASLTQHQRV-HSGEKPSG   42 (46)
T ss_dssp             CCCCCCCCSSSCBCTT--TCCBCSSSHHHHHHGGG-SCCSCCCC
T ss_pred             CCCCCcCCCCCcCCCC--cCchhCCHHHHHHHHHH-hCCCCCCC
Confidence            4778889999999988  99999999999999887 66655543

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.1e-10  Score=66.48  Aligned_cols=40  Identities=33%  Similarity=0.510  Sum_probs=34.5

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +|+++|++++||.|.+  |++.|.+...|..|+++ |.+..+.
T Consensus         2 ~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2emz_A            2 SSGSSGSGERPFKCNE--CGKGFGRRSHLAGHLRL-HSREKSS   41 (46)
T ss_dssp             CCCSCSSCCCSCCCSS--SCCCCSSHHHHHHHHHH-HHHTTCC
T ss_pred             CCCcCCCCCCCeECCC--CCcccCCHHHHHHHHHH-hCCCCCC
Confidence            5889999999999998  99999999999999988 4454443

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=8e-10  Score=64.63  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=34.2

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+.
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2yso_A            2 SSGSSGSREKSHQCRE--CGEIFFQYVSLIEHQVL-HMGQKNS   41 (46)
T ss_dssp             CCSCCSSCCCCEECTT--TCCEESSHHHHHHHHHH-HSCCSCC
T ss_pred             CcccccCCCCCEEccc--cChhhCCHHHHHHHHHH-hCCCCCC
Confidence            5788999999999998  99999999999999988 5555543

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4e-10  Score=65.98  Aligned_cols=39  Identities=28%  Similarity=0.573  Sum_probs=26.8

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      +|+++|++++||.|.+  |++.|.+.+.|.+|+++ |.+..+
T Consensus         2 ~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGE--CGKSYNQRVHLTQHQRV-HTGEKP   40 (46)
T ss_dssp             CCCCCCSSCCSEECTT--TCCEESSSHHHHTTGGG-GSSCCS
T ss_pred             CCCCCCCCCCCeECCC--CCcccCCHHHHHHHHHH-cCCCCC
Confidence            4667777777777776  77777777777777765 444443

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4e-11  Score=70.36  Aligned_cols=39  Identities=28%  Similarity=0.584  Sum_probs=31.8

Q ss_pred             ccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           63 VYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        63 H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      ++++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         3 ~~~~h~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDV--CHKSFRYGSSLTVHQRI-HTGEKPS   41 (46)
T ss_dssp             CCCSSTTCCSEECSS--SCCEESSHHHHHHHHTT-TSSSCCC
T ss_pred             CCCCCCCCCCeeCcc--cCcccCChHHHHHHHHH-hCCCCCC
Confidence            467788999999988  99999999999999887 5565544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=7.8e-10  Score=61.10  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.4

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      +.|++++||+|  +.|++.|.+...|..|+++|+++
T Consensus         2 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDC--HICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCSCCCCCEEC--SSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCeEC--CCCCCccCCHHHHHHHHHHhcCC
Confidence            68999999999  57999999999999999999765

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=9.1e-10  Score=60.82  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      ++|++++||+|  +.|++.|.+...|..|+++|+++
T Consensus         2 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKC--SLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEEC--SSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccC--CCCCchhCCHHHHHHHHHHhccC
Confidence            57999999999  57999999999999999999765

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=7.4e-10  Score=61.55  Aligned_cols=33  Identities=42%  Similarity=0.800  Sum_probs=30.0

Q ss_pred             cccCCCCCCeecCcccccccccChHHHHHHHHhhC
Q 027872           64 YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        64 ~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      +++|++++||.|.+  |++.|.+.+.|..|+++|+
T Consensus         1 ~~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            1 GSSGSSGRSYSCPV--CEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCCEETT--TTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCCcCCCC--CCCccCCHHHHHHHHHHHc
Confidence            46789999999999  9999999999999999854

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.4e-09  Score=61.35  Aligned_cols=32  Identities=41%  Similarity=0.676  Sum_probs=28.2

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhh
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      .|+++|||+|.+.+|+++|.+.+.|++|+++|
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~H   34 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVH   34 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            35899999997545999999999999999984

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.4e-09  Score=59.98  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      .+|++++||.|  +.|++.|.+...|..|+++|+++
T Consensus         2 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            2 SSGSSGKPYKC--PQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCSCCCCSEEC--SSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCC--CCCCcccCCHHHHHHHHHHccCC
Confidence            57999999999  57999999999999999999865

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1e-09  Score=64.26  Aligned_cols=39  Identities=33%  Similarity=0.617  Sum_probs=33.6

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+
T Consensus         2 ~h~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~~~   40 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVE--CGKGYKRRLDLDFHQRV-HTGEKL   40 (46)
T ss_dssp             CCCCCCCSCCSEECSS--SCCEESSHHHHHHHHHH-HHCCCC
T ss_pred             CCCCCCCCCCCeECcc--cCchhCCHHHHHHHHHH-HcCCCC
Confidence            4788999999999998  99999999999999988 555444

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.2e-09  Score=63.25  Aligned_cols=39  Identities=23%  Similarity=0.341  Sum_probs=33.7

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      .|+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+
T Consensus         2 ~h~~~h~~~~~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~   40 (44)
T 2eou_A            2 SSGSSGAAKTTSECQE--CGKIFRHSSLLIEHQAL-HAGESG   40 (44)
T ss_dssp             CCSCSCSSSCCCCCTT--TCCCCSSHHHHHHHHHH-HTTSCC
T ss_pred             CCCCCCCCCcCeECCC--CCcccCCHHHHHHHHHH-HCCCCC
Confidence            3788899999999998  99999999999999988 555544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.88  E-value=1.4e-09  Score=59.04  Aligned_cols=32  Identities=28%  Similarity=0.537  Sum_probs=29.2

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCCCcc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAV   41 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~   41 (217)
                      |||.|  +.|++.|.+.+.|..|+++|++++||.
T Consensus         1 kp~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFAC--PECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCC--SSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccC--CCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            68999  589999999999999999998888774

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.6e-09  Score=60.34  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=29.9

Q ss_pred             cccCCCCCCeecCcccccccccChHHHHHH-HHhhCCC
Q 027872           64 YGSASSERPYACPYEGCEKAYIHEYKLKLH-LKREHPG  100 (217)
Q Consensus        64 ~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H-~~~~h~~  100 (217)
                      +++|++++||+|..  |++.|.+.+.|.+| +++ |++
T Consensus         1 ~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~~-H~~   35 (37)
T 2elm_A            1 GSSGSSGHLYYCSQ--CHYSSITKNCLKRHVIQK-HSN   35 (37)
T ss_dssp             CCSSSSSCEEECSS--SSCEEECHHHHHHHHHHH-TCC
T ss_pred             CCccCCCcCeECCC--CCcccCCHHHHHHHHHHH-ccC
Confidence            46789999999998  99999999999999 766 654

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.4e-11  Score=69.84  Aligned_cols=38  Identities=29%  Similarity=0.588  Sum_probs=30.4

Q ss_pred             ccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           63 VYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        63 H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      .+++|++++||.|.+  |++.|.+...|.+|+++ |.+..+
T Consensus         3 ~~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~   40 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSE--CGKSFSGSYRLTQHWIT-HTREKP   40 (46)
T ss_dssp             CSSSCSCCCTTCCSS--SCCCCSSHHHHHHHHTH-HHHCCC
T ss_pred             CCCCCCCCCCeeCCC--CCcccCCHHHHHHHHHH-cCCCCC
Confidence            356788999999988  99999999999999887 444444

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.85  E-value=1.2e-09  Score=64.73  Aligned_cols=34  Identities=32%  Similarity=0.543  Sum_probs=29.4

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHH-hhcCCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIA-SHHEKN   38 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~-~H~~~k   38 (217)
                      +|+++|||.|  ..|+|.|.+...|..|++ +|+++.
T Consensus         1 ~Ht~~kp~~C--~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYAC--DICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEEC--TTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEEC--CCcCcccCCHHHHHHHhhhhcCCCC
Confidence            6999999999  579999999999999999 998653

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2.2e-09  Score=59.12  Aligned_cols=35  Identities=29%  Similarity=0.557  Sum_probs=31.6

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      .+|++++||.|  +.|++.|.+...|..|+++|++++
T Consensus         2 ~~h~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            2 SSGSSGKTHLC--DMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCCSSCBC--TTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCCeec--CcCCCCcCchHHHHHHHHHhcCCC
Confidence            47999999999  589999999999999999998653

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.5e-09  Score=62.23  Aligned_cols=39  Identities=26%  Similarity=0.523  Sum_probs=33.4

Q ss_pred             ccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           63 VYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        63 H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +.++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         3 ~~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (45)
T 2epu_A            3 SGSSGTGQKPFECTH--CGKSFRAKGNLVTHQRI-HTGEKSG   41 (45)
T ss_dssp             CCCCCCSCCSEEETT--TTEEESSHHHHHHHHTT-TSSCCCC
T ss_pred             CCCCCCCCcCccCCC--CCCccCChHHHHHHHHH-hCCCCCC
Confidence            567889999999999  99999999999999987 6665544

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.84  E-value=3.3e-09  Score=57.95  Aligned_cols=33  Identities=24%  Similarity=0.638  Sum_probs=29.0

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      +|++++||.|.+  |++.|.+.+.|.+|+++ |.+.
T Consensus         1 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-h~~~   33 (35)
T 2elx_A            1 GSSGSSGYVCAL--CLKKFVSSIRLRSHIRE-VHGA   33 (35)
T ss_dssp             CCCCCCSEECSS--SCCEESSHHHHHHHHHH-TSCT
T ss_pred             CCCCCCCeECCC--CcchhCCHHHHHHHHHH-HcCC
Confidence            478999999999  99999999999999998 4443

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.84  E-value=2.9e-09  Score=58.31  Aligned_cols=34  Identities=29%  Similarity=0.625  Sum_probs=29.6

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhhCCCCC
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      +|++++||.|.+  |++.|.+.+.|.+|+++ |.+..
T Consensus         1 ~H~~~k~~~C~~--C~k~f~~~~~l~~H~~~-H~~~~   34 (35)
T 1srk_A            1 GSSGKRPFVCRI--CLSAFTTKANCARHLKV-HTDTL   34 (35)
T ss_dssp             CCSCCSCEECSS--SCCEESSHHHHHHHHGG-GTSCC
T ss_pred             CCCCCcCeeCCC--CCcccCCHHHHHHHHHH-cCCCC
Confidence            478999999999  99999999999999988 55443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.83  E-value=3.8e-09  Score=68.78  Aligned_cols=41  Identities=22%  Similarity=0.537  Sum_probs=37.3

Q ss_pred             CcccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           59 PPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        59 ~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      .|.+|+++|++++||.|.+  |++.|.+...|.+|++++|.+.
T Consensus         2 s~~~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~~h~~~   42 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTEN   42 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTT--TCCEESCHHHHHHHHHHHSSSS
T ss_pred             CCCccccccCCCCCeECCC--cCchhCCHHHHHHHHHHhcCCC
Confidence            5788999999999999999  9999999999999998667764

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.83  E-value=1.2e-09  Score=70.57  Aligned_cols=38  Identities=24%  Similarity=0.415  Sum_probs=34.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAA   40 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~   40 (217)
                      +++|++++||+|  +.|++.|.+...|..|+++|++++||
T Consensus        37 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           37 KTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             HHHHCCCCSEEC--TTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             HHHcCCCCCEEC--CCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            367999999999  57999999999999999999888776

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.9e-09  Score=62.26  Aligned_cols=39  Identities=23%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             ccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           63 VYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        63 H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      ++++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         3 ~~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~   41 (46)
T 2eom_A            3 SGSSGHGERGHRCSD--CGKFFLQASNFIQHRRI-HTGEKPS   41 (46)
T ss_dssp             CCCCCCCCSSCCCSS--SCCCCSSHHHHHHHHHH-HSSCCCS
T ss_pred             CCCCCCCCCCcCCCC--CCCeeCChHHHHHHHHH-hCCCCCC
Confidence            467889999999998  99999999999999988 5555544

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=4e-09  Score=58.12  Aligned_cols=33  Identities=21%  Similarity=0.460  Sum_probs=30.5

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      .|++++||.|  +.|++.|.....|..|+++|+++
T Consensus         3 ~~~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTC--EYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEEC--TTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEEC--CCCCceeCCHHHHHHHHHHhCCC
Confidence            6899999999  57999999999999999999865

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=5.2e-09  Score=59.50  Aligned_cols=36  Identities=31%  Similarity=0.581  Sum_probs=31.3

Q ss_pred             ccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           65 GSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      ++|++++||.|.+  |++.|.+...|..|+++ |.+..+
T Consensus         3 ~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~   38 (41)
T 2ept_A            3 SGSSGQRVYECQE--CGKSFRQKGSLTLHERI-HTGSGP   38 (41)
T ss_dssp             SSCCCCCCEECSS--SCCEESSHHHHHHHGGG-CCCCSC
T ss_pred             CccCCCCCeECCC--CCCCcCCHHHHHHHHHH-hCCCCC
Confidence            5689999999998  99999999999999987 666554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.77  E-value=4.8e-09  Score=62.11  Aligned_cols=36  Identities=28%  Similarity=0.590  Sum_probs=28.8

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      +|+++|||.|.+  |++.|.+..+|.+|++..|.+...
T Consensus         1 ~Ht~~kp~~C~~--C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDI--CGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTT--TCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCC--cCcccCCHHHHHHHhhhhcCCCCC
Confidence            478999999999  999999999999999933666543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.77  E-value=4.1e-09  Score=56.04  Aligned_cols=31  Identities=26%  Similarity=0.659  Sum_probs=27.2

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      +||.|.|+.||+.|.+.+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            6899965589999999999999999998653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.75  E-value=7.1e-09  Score=55.46  Aligned_cols=32  Identities=31%  Similarity=0.553  Sum_probs=27.7

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      ++||.|.++.|++.|.+...|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            58999954479999999999999999998653

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=9.4e-09  Score=60.40  Aligned_cols=40  Identities=25%  Similarity=0.478  Sum_probs=32.5

Q ss_pred             cccccCCCCCCeecC--cccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACP--YEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~--~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .|.++|++++||.|.  .  |++.|.+...|.+|+++ |.+..+.
T Consensus         2 ~~~~~H~~~k~~~C~~~~--C~k~f~~~~~L~~H~~~-H~~~k~~   43 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPG--CGWRFSRSDELSRHRRS-HSGVKPS   43 (48)
T ss_dssp             CCCCSSCCCCCEECCSSS--CCCEESSHHHHHHHHTT-SCCCCSC
T ss_pred             CCCCCcCCCCCeECCCCC--CCCccCCHHHHHHHHHH-hCCCCCC
Confidence            366788999999997  6  99999999999999987 6665544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.75  E-value=2.1e-08  Score=63.27  Aligned_cols=62  Identities=19%  Similarity=0.470  Sum_probs=50.9

Q ss_pred             eecCCCCCCccccChhhHHHHH-HhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChH
Q 027872           10 HICPYPDCGKRYAHEYKLKNHI-ASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEY   88 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~-~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~   88 (217)
                      +.|.|..|++.|.+...|..|+ +.|.+.++-                           ....+|.|.+.+|++.+....
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~---------------------------~~~~~~~C~W~~C~~~~~~~~   54 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFK---------------------------HPMEPLACNWEDCDFLGDDTA   54 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCC---------------------------CSSCCEECCCSSCCCEESSHH
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccC---------------------------CCCCCCEeeCCCCcCCCCChH
Confidence            6799999999999999999998 578643210                           122489999889999999999


Q ss_pred             HHHHHHHhhC
Q 027872           89 KLKLHLKREH   98 (217)
Q Consensus        89 ~L~~H~~~~h   98 (217)
                      .|..|+++.|
T Consensus        55 ~L~~Hir~~H   64 (64)
T 1zw8_A           55 SIVNHINAQH   64 (64)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHhhccccC
Confidence            9999999865

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.4e-08  Score=55.84  Aligned_cols=33  Identities=39%  Similarity=0.709  Sum_probs=29.3

Q ss_pred             ccCCCCCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           65 GSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      ++|++++||+|.+  |++.|.+.+.|..|+++ |.+
T Consensus         2 ~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~-H~~   34 (36)
T 2elq_A            2 SSGSSGKPFKCSL--CEYATRSKSNLKAHMNR-HST   34 (36)
T ss_dssp             CSSCCCCSEECSS--SSCEESCHHHHHHHHHH-SST
T ss_pred             CCCCCCCCccCCC--CCchhCCHHHHHHHHHH-hcc
Confidence            3578999999999  99999999999999987 544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.1e-08  Score=56.31  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=29.3

Q ss_pred             ccCCCCCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           65 GSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      +.|++++||+|.+  |++.|.+.+.|.+|+++ |++
T Consensus         2 ~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~-H~~   34 (36)
T 2elv_A            2 SSGSSGLLYDCHI--CERKFKNELDRDRHMLV-HGD   34 (36)
T ss_dssp             CCSCCCCCEECSS--SCCEESSHHHHHHHHTT-TST
T ss_pred             CCCCCCCCeECCC--CCCccCCHHHHHHHHHH-hcC
Confidence            3578999999999  99999999999999987 544

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=1e-08  Score=58.99  Aligned_cols=37  Identities=22%  Similarity=0.369  Sum_probs=31.0

Q ss_pred             ccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           65 GSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      ++|++++||.|..  |++.|.+...|.+|+++ |.+..+.
T Consensus         3 ~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   39 (43)
T 2yrm_A            3 SGSSGNGAFFCNE--CDCRFSEEASLKRHTLQ-THSDKSG   39 (43)
T ss_dssp             SCCSSSCCBCCSS--SCCCBSSHHHHHHHHHH-HTCTTCS
T ss_pred             cCcCCCCCEECCC--CCCeeCChHHHHHHHHh-hCCCCCc
Confidence            4678999999998  99999999999999988 5555443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.7e-08  Score=55.41  Aligned_cols=31  Identities=39%  Similarity=0.757  Sum_probs=28.5

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhhC
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      +|++++||.|.+  |++.|.+...|.+|+++|.
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQ--CSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSS--SSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCC--CCcccCCHHHHHHHHHHcc
Confidence            578999999999  9999999999999999853

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.1e-08  Score=56.71  Aligned_cols=32  Identities=31%  Similarity=0.659  Sum_probs=29.0

Q ss_pred             ccCCCCCCeecCcccccccccCh-HHHHHHHHhhC
Q 027872           65 GSASSERPYACPYEGCEKAYIHE-YKLKLHLKREH   98 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~-~~L~~H~~~~h   98 (217)
                      ++|++++||+|.+  |++.|.+. +.|.+|+++|.
T Consensus         2 ~~h~~~k~~~C~~--C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPY--CDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSS--SSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCC--CChhhccCHHHHHHHHHhcC
Confidence            5689999999998  99999999 99999998843

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.69  E-value=1.6e-08  Score=56.77  Aligned_cols=35  Identities=20%  Similarity=0.496  Sum_probs=29.6

Q ss_pred             CCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           67 ASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        67 H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      |++++||.|.+  |++.|.+.+.|..|+++ |.+..+.
T Consensus         1 h~~~k~~~C~~--C~k~f~~~~~L~~H~~~-H~~~k~~   35 (39)
T 1njq_A            1 XWPPRSYTCSF--CKREFRSAQALGGHMNV-HRRDRAR   35 (39)
T ss_dssp             -CCSSSEECTT--TCCEESSHHHHHHHHHT-TCCSCTT
T ss_pred             CCCCCceECCC--CCcccCCHHHHHHHHHH-cCCCccc
Confidence            57899999999  99999999999999987 6665543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.69  E-value=5.7e-09  Score=61.42  Aligned_cols=40  Identities=18%  Similarity=0.590  Sum_probs=32.4

Q ss_pred             CcccccccCCCCCCeecCcccccccccChHHHHHHHHhhC
Q 027872           59 PPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        59 ~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      .+..|+.+|++++||.|.+..|++.|.+.+.|.+|+++|.
T Consensus         5 ~~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            3445667799999999962239999999999999999843

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.66  E-value=7.2e-09  Score=57.61  Aligned_cols=27  Identities=19%  Similarity=0.438  Sum_probs=25.0

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHH
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHI   31 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~   31 (217)
                      .++|+|||+|  +.|||+|.++++|++|+
T Consensus         2 ~~~gekp~~C--~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            2 SLLKPARFMC--LPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CSSSCCCCEE--TTTTEECSCHHHHHHHH
T ss_pred             CCCCccCeEC--CCCCCccCCHhHccCcC
Confidence            3689999999  58999999999999998

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.65  E-value=1.8e-08  Score=58.41  Aligned_cols=37  Identities=27%  Similarity=0.769  Sum_probs=29.3

Q ss_pred             ccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           65 GSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .+|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         3 ~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~-H~~~~~~   39 (45)
T 2epq_A            3 SGSSGEKPYSCPV--CGLRFKRKDRMSYHVRS-HDGSVGK   39 (45)
T ss_dssp             CCCSSCCSSEETT--TTEECSCHHHHHHHHHH-HSCCCCC
T ss_pred             CCcCCCCCCcCCC--CCcccCCHHHHHHHHHH-ccCCCCC
Confidence            3578889999988  99999999999999987 4444443

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.65  E-value=1.3e-09  Score=58.77  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=26.6

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCCCc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAA   40 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~   40 (217)
                      +||.|  +.|++.|.+.+.|..|+++|++++||
T Consensus         1 kp~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFAC--PACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSS--SSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCC--CCCCcccCCHHHHHHHHHHHccCCCC
Confidence            58999  57999999999999999999877776

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=7.1e-08  Score=61.14  Aligned_cols=35  Identities=14%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             ccCCCCCCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           65 GSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      ..|.++|||+|..  |+|+|.+.+.|.+|+++|....
T Consensus         6 ~~~~~ekpy~C~~--CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            6 SGLREAGILPCGL--CGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CSCCCCCCCCCTT--TCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCccCcCCCC--CCCccCCHHHHHhhhhhhCCCc
Confidence            3468899999999  9999999999999999965543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=3.6e-08  Score=54.05  Aligned_cols=31  Identities=29%  Similarity=0.374  Sum_probs=28.3

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhhC
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      +|++++||.|.+  |++.|.+...|.+|+++|.
T Consensus         3 ~h~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDM--CGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTT--TCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCc--CCCCcCchHHHHHHHHHhc
Confidence            578999999999  9999999999999999853

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.61  E-value=2.1e-08  Score=63.90  Aligned_cols=39  Identities=15%  Similarity=0.289  Sum_probs=35.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCCCcc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAV   41 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~   41 (217)
                      +++|++++||+|  +.|++.|.+...|..|+++|++++|..
T Consensus        29 ~~~H~~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A           29 ERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             HGGGCCSCSEEC--SSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             HHHcCCCCCEeC--CCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            468999999999  579999999999999999999887763

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=3.8e-08  Score=62.44  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      ..|+++|||+|  ..|+|.|.+...|+.|+++|++.+
T Consensus         6 ~~~~~ekpy~C--~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            6 SGLREAGILPC--GLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CSCCCCCCCCC--TTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCccCcCC--CCCCCccCCHHHHHhhhhhhCCCc
Confidence            35889999999  589999999999999999998753

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=4.9e-08  Score=53.57  Aligned_cols=31  Identities=32%  Similarity=0.681  Sum_probs=28.0

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhhC
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      .|++++||.|.+  |++.|.+...|..|+++|.
T Consensus         3 ~~~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEY--CNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTT--TCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCC--CCceeCCHHHHHHHHHHhC
Confidence            467899999999  9999999999999999854

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=2.8e-08  Score=55.29  Aligned_cols=35  Identities=26%  Similarity=0.669  Sum_probs=28.7

Q ss_pred             CCCCCCeecCcccccccccChHHHHHHHHhhCCCCC
Q 027872           67 ASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        67 H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      |++++||.|.+..|++.|.+.+.|.+|+++ |.+..
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k   35 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHK-HEMTL   35 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHH-HHTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHH-hCCCC
Confidence            578999999833499999999999999988 44433

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.54  E-value=4.3e-08  Score=54.42  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=25.1

Q ss_pred             CCCCCCeecCcccccccccChHHHHHHHH
Q 027872           67 ASSERPYACPYEGCEKAYIHEYKLKLHLK   95 (217)
Q Consensus        67 H~~ekp~~C~~~~C~k~F~~~~~L~~H~~   95 (217)
                      ++++|||+|..  |+|+|++.++|.+|+.
T Consensus         3 ~~gekp~~C~~--CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLP--CGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETT--TTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCC--CCCccCCHhHccCcCC
Confidence            47999999998  9999999999999984

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.53  E-value=6.1e-08  Score=50.23  Aligned_cols=29  Identities=34%  Similarity=0.659  Sum_probs=26.1

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      +||.|  +.|++.|.....|..|+++|++++
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFAC--PECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEEC--SSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccC--CCCCchhCCHHHHHHHHHHhcCCC
Confidence            68999  589999999999999999998653

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.52  E-value=4.9e-08  Score=54.09  Aligned_cols=32  Identities=25%  Similarity=0.558  Sum_probs=27.8

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhh
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      .|++++||.|.+..|++.|.+.+.|.+|+++|
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            36899999997334999999999999999984

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.52  E-value=3.2e-08  Score=60.22  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|++++
T Consensus        21 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A           21 IRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             HHHTSSCCCEEC--SSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             HHhcCCCCCccC--CCCCchhcCHHHHHHHHHHhcccC
Confidence            367999999999  579999999999999999997654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.52  E-value=6.5e-08  Score=50.37  Aligned_cols=29  Identities=17%  Similarity=0.442  Sum_probs=26.3

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      ++||.|  ..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C--~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQC--DYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEEC--TTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccC--CCCCcccCCHHHHHHHHHHhccC
Confidence            589999  57999999999999999999765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.51  E-value=3.5e-08  Score=65.86  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=30.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHH-HhhcCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHI-ASHHEK   37 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~-~~H~~~   37 (217)
                      +++|++++||.|  +.|+++|.+...|.+|+ ++|+++
T Consensus        48 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           48 LRLLHAAQVFPC--KYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             HHTTSCSSSEEC--TTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             hhhccCCCccCC--CCCCCEeCCHHHHHHhCcccCcCC
Confidence            478999999999  57999999999999997 567654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.50  E-value=6.1e-08  Score=50.18  Aligned_cols=29  Identities=24%  Similarity=0.622  Sum_probs=25.6

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      +||.|.|+.|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            58999655899999999999999999963

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.48  E-value=9.8e-08  Score=49.36  Aligned_cols=28  Identities=29%  Similarity=0.618  Sum_probs=25.5

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      +||.|  +.|++.|.+...|..|+++|+++
T Consensus         1 k~~~C--~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVC--EVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBC--TTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeEC--CCCCcccCCHHHHHHHHHHhcCC
Confidence            68999  57999999999999999999765

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.46  E-value=1.1e-07  Score=49.02  Aligned_cols=29  Identities=28%  Similarity=0.606  Sum_probs=26.1

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      +||.|  +.|++.|.....|..|+++|++++
T Consensus         1 ~~~~C--~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKC--RECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEEC--TTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccC--CCCCCccCChhHHHHHHHHhcCCC
Confidence            68999  579999999999999999998753

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.46  E-value=1.2e-07  Score=49.32  Aligned_cols=30  Identities=33%  Similarity=0.497  Sum_probs=26.6

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKNA   39 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp   39 (217)
                      +||.|  +.|++.|...+.|..|+++|++++|
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQC--QYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCC--SSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccC--CCCCCccCCHHHHHHHHHHHccCCC
Confidence            58999  5799999999999999999987653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.1e-07  Score=49.04  Aligned_cols=29  Identities=31%  Similarity=0.668  Sum_probs=26.0

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      +||.|  +.|++.|.+...|..|+++|++++
T Consensus         1 k~~~C--~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKC--PHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCC--SSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcC--CCCCcccCCHHHHHHHHHHhccCC
Confidence            68999  579999999999999999998753

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.45  E-value=1.1e-07  Score=48.59  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=24.7

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      ++||.|  +.||+.|.+...|..|+++|+
T Consensus         1 ek~~~C--~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSC--SLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEEC--SSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccC--CCcChhhCCHHHHHHHHHHcc
Confidence            589999  589999999999999999984

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.44  E-value=1.1e-07  Score=48.96  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=25.3

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      ++||.|  +.|++.|.+...|..|+++|++
T Consensus         1 ~k~~~C--~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSC--SVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEEC--SSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccC--CCCCcccCCHHHHHHHHHhcCC
Confidence            589999  5899999999999999999863

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.42  E-value=8.1e-08  Score=49.20  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=24.6

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      ++||.|  +.|++.|.+.+.|..|+++|+
T Consensus         1 ~k~~~C--~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRC--PLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEE--TTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCC--CCCCcccCCHHHHHHHHHhcC
Confidence            589999  589999999999999999884

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.42  E-value=1e-07  Score=48.79  Aligned_cols=26  Identities=23%  Similarity=0.655  Sum_probs=23.8

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhh
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      ++||.|..  |++.|.+.+.|.+|+++|
T Consensus         1 ~k~~~C~~--C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPL--CRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETT--TTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCC--CCcccCCHHHHHHHHHhc
Confidence            47999998  999999999999999873

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.42  E-value=1.6e-07  Score=47.93  Aligned_cols=26  Identities=23%  Similarity=0.609  Sum_probs=23.9

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhh
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      ++||.|..  |++.|.+.+.|..|+++|
T Consensus         1 ek~~~C~~--C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSL--CPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSS--SSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCC--cChhhCCHHHHHHHHHHc
Confidence            47999998  999999999999999873

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.41  E-value=1e-07  Score=59.84  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=34.1

Q ss_pred             cccCCCCCCeecCcccccccccChHHHHHHHHhhC-CCCCCccc
Q 027872           64 YGSASSERPYACPYEGCEKAYIHEYKLKLHLKREH-PGHMSDEN  106 (217)
Q Consensus        64 ~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h-~~~~~~~~  106 (217)
                      +++|++++||.|.+  |++.|.+...|..|++++| .+..+..+
T Consensus         2 ~~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~~H~~~~~~~~C   43 (66)
T 2drp_A            2 EFTKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPC   43 (66)
T ss_dssp             -CEEEETTEEECTT--TCCEESSHHHHHHHHHHHSSSSCCCEEC
T ss_pred             ccccCCCcceECCC--CcchhCCHHHHHHHHHHHcCCCCcCeEC
Confidence            35788999999998  9999999999999999867 56665443

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.40  E-value=1.7e-07  Score=50.47  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=25.7

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCCCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPGHMS  103 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~  103 (217)
                      |||.|.+  |++.|.+.+.|..|+++ |.+..+
T Consensus         1 kp~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~   30 (33)
T 1rim_A            1 YKFACPE--CPKRFMRSDHLSKHITL-HELLGE   30 (33)
T ss_dssp             CCCCCSS--SCCCCSSHHHHHHHHHH-HTTTCC
T ss_pred             CcccCCC--CCchhCCHHHHHHHHHH-hCCCCC
Confidence            6899998  99999999999999987 555543

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.39  E-value=1.8e-07  Score=47.99  Aligned_cols=26  Identities=27%  Similarity=0.705  Sum_probs=23.8

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhh
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      ++||.|..  |++.|.+.+.|..|+++|
T Consensus         1 ~k~~~C~~--C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            1 MRPYSCSV--CGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CCSEECSS--SCCEESCHHHHHHHHTTS
T ss_pred             CcCccCCC--CCcccCCHHHHHHHHHhc
Confidence            47999998  999999999999999873

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=4e-07  Score=54.87  Aligned_cols=40  Identities=28%  Similarity=0.527  Sum_probs=33.3

Q ss_pred             ccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCccc
Q 027872           65 GSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDEN  106 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~~  106 (217)
                      ..|++++||.|.+  |++.|.+...|.+|++..|.+..+..+
T Consensus         5 ~~~~~~k~~~C~~--C~k~f~~~~~L~~H~~~~H~~~k~~~C   44 (54)
T 2eps_A            5 SSGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKC   44 (54)
T ss_dssp             CCCCSSCCEECSS--SCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCCCCCCCeECCC--CCcccCCHHHHHHHHHHhcCCCCCccC
Confidence            3578999999999  999999999999999844777665543

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.74  E-value=4.1e-08  Score=51.02  Aligned_cols=28  Identities=25%  Similarity=0.517  Sum_probs=25.1

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      +||.|  +.|++.|...+.|..|+++|+++
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQC--VMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            68999  57999999999999999999764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.38  E-value=8.4e-08  Score=58.29  Aligned_cols=33  Identities=30%  Similarity=0.533  Sum_probs=30.2

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|+
T Consensus        24 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C           24 LRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             HHHHHCCCCEEC--SSSSCEESSHHHHHHHHHHHC
T ss_pred             HHHcCCCCCcCC--CCCcchhCCHHHHHHHHHHhc
Confidence            367999999999  579999999999999999986

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.38  E-value=2.6e-07  Score=59.09  Aligned_cols=40  Identities=35%  Similarity=0.592  Sum_probs=33.9

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      .+.++|++++||.|.+  |++.|.+...|.+|+++ |.+..+.
T Consensus         4 ~~~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-h~~~~~~   43 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVE--CGKAFSRSSILVQHQRV-HTGEKPY   43 (72)
T ss_dssp             CCCCTTTTCCCEECSS--SCCEESSHHHHHHHHHG-GGCSCCE
T ss_pred             CCCcccCCCCCccCCC--CCCccCCHHHHHHHHHh-cCCCCCe
Confidence            4567899999999999  99999999999999998 5554443

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.37  E-value=1.1e-07  Score=59.26  Aligned_cols=41  Identities=10%  Similarity=0.144  Sum_probs=34.2

Q ss_pred             cccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCccc
Q 027872           60 PAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDEN  106 (217)
Q Consensus        60 l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~~  106 (217)
                      |..|+++|++++||.|++  |++.|.+...|.   ++ |.+..+..+
T Consensus         2 L~~h~~~H~~~k~~~C~~--C~k~F~~~~~l~---~~-H~~~k~~~C   42 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPV--CSSTFTDLEANQ---LF-DPMTGTFRC   42 (62)
T ss_dssp             CCCCSSSCCSSSEEECSS--SCCEEEHHHHHH---HE-ETTTTEEBC
T ss_pred             hhhHHHHcCCCCCccCCC--CCchhccHHHhH---hh-cCCCCCEEC
Confidence            678999999999999999  999999988886   44 777665443

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.37  E-value=2.8e-07  Score=54.06  Aligned_cols=27  Identities=26%  Similarity=0.528  Sum_probs=14.2

Q ss_pred             CCCCCeecCcccccccccChHHHHHHHHh
Q 027872           68 SSERPYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        68 ~~ekp~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      ++++||.|.+  |++.|.+...|.+|+++
T Consensus         8 ~~~k~~~C~~--C~k~f~~~~~L~~H~~~   34 (48)
T 2epr_A            8 RTRKQVACEI--CGKIFRDVYHLNRHKLS   34 (48)
T ss_dssp             CCCCSEEETT--TTEEESSHHHHHHHGGG
T ss_pred             CCCcCeeCCC--CCcccCCHHHHHHHHHh
Confidence            4455555554  55555555555555544

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.37  E-value=4.5e-07  Score=60.78  Aligned_cols=42  Identities=19%  Similarity=0.297  Sum_probs=34.3

Q ss_pred             cccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           60 PAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        60 l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +..|.++|++++||.|.+  |++.|.+...|..|+++ |.+..+.
T Consensus        13 ~~~~~~~H~~~kpy~C~~--C~k~F~~~~~L~~H~~~-Ht~ekp~   54 (88)
T 1x6f_A           13 IILGNGPRLQNSTYQCKH--CDSKLQSTAELTSHLNI-HNEEFQK   54 (88)
T ss_dssp             CCCCCCSCCCCSCEECSS--SCCEESSHHHHHHHHHH-HHHHHHH
T ss_pred             eeccccccCCCCCCcCCC--CCCEeCCHHHHHHHHHH-hCCCCCc
Confidence            344567799999999998  99999999999999987 5554443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.70  E-value=5.2e-08  Score=50.89  Aligned_cols=29  Identities=21%  Similarity=0.486  Sum_probs=25.7

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      ++||.|  +.|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C--~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVC--IHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            479999  57999999999999999999764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.34  E-value=3.1e-07  Score=48.76  Aligned_cols=28  Identities=39%  Similarity=0.834  Sum_probs=24.5

Q ss_pred             CCCeecC--cccccccccChHHHHHHHHhhCCC
Q 027872           70 ERPYACP--YEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        70 ekp~~C~--~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      ++||.|.  .  |+++|.+.+.|..|+++ |++
T Consensus         1 ek~~~C~~~~--C~k~f~~~~~L~~H~~~-H~~   30 (32)
T 1zfd_A            1 DRPYSCDHPG--CDKAFVRNHDLIRHKKS-HQE   30 (32)
T ss_dssp             CCSBCCCCTT--CCCCBSSSHHHHHHHGG-GTC
T ss_pred             CCCCcCcCCC--CCCccCCHHHHHHHHHH-ccC
Confidence            4799998  6  99999999999999988 443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.32  E-value=5.2e-07  Score=46.74  Aligned_cols=28  Identities=29%  Similarity=0.713  Sum_probs=24.8

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      ++||.|..  |++.|.....|..|+++ |.+
T Consensus         1 ~k~~~C~~--C~~~f~~~~~l~~H~~~-h~~   28 (30)
T 2m0d_A            1 MKPYQCDY--CGRSFSDPTSKMRHLET-HDT   28 (30)
T ss_dssp             CCCEECTT--TCCEESCHHHHHHHHHT-TCC
T ss_pred             CcCccCCC--CCcccCCHHHHHHHHHH-hcc
Confidence            48999998  99999999999999987 443

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.32  E-value=1.2e-07  Score=60.61  Aligned_cols=34  Identities=29%  Similarity=0.644  Sum_probs=30.0

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhh
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      +++|++++||+|.|+.|++.|.+...|..|+++|
T Consensus        39 ~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           39 TRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             HHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             HHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3689999999996446999999999999999876

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.31  E-value=4.2e-07  Score=47.10  Aligned_cols=28  Identities=36%  Similarity=0.734  Sum_probs=24.9

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      +||.|.+  |++.|.+.+.|..|+++|++.
T Consensus         1 k~~~C~~--C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            1 KTYQCQY--CEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSS--SSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccCCC--CCCccCCHHHHHHHHHHHccC
Confidence            5899998  999999999999999986643

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.31  E-value=3.8e-07  Score=48.05  Aligned_cols=29  Identities=31%  Similarity=0.781  Sum_probs=23.7

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      +||.|.+..|++.|.+.+.|..|+++ |++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~-H~~   29 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHH-hcC
Confidence            58999722299999999999999988 544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.28  E-value=3.8e-07  Score=46.27  Aligned_cols=26  Identities=19%  Similarity=0.434  Sum_probs=23.1

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      ||.|  +.|++.|.+...|..|+++|++
T Consensus         1 ~~~C--~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKC--GLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBC--SSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccC--CCCCCcCCCHHHHHHHHHHcCC
Confidence            6899  5799999999999999999975

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.27  E-value=6.6e-07  Score=46.05  Aligned_cols=26  Identities=27%  Similarity=0.703  Sum_probs=23.7

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      +||.|.+  |++.|.+.+.|..|+++|.
T Consensus         1 k~~~C~~--C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEV--CTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTT--TCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCC--CCcccCCHHHHHHHHHHhc
Confidence            5899998  9999999999999999854

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.27  E-value=3.1e-07  Score=56.36  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHH-HhhcCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHI-ASHHEK   37 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~-~~H~~~   37 (217)
                      +++|++++||.|  +.|++.|.+...|..|+ ++|++.
T Consensus        22 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           22 YRSHTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             HHTTTSSCSEEC--TTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             HHHhCCCCCccC--CCCCCccCCHHHHHHHHHHHcCCc
Confidence            368999999999  57999999999999997 688653

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.26  E-value=3.5e-07  Score=47.60  Aligned_cols=28  Identities=18%  Similarity=0.325  Sum_probs=24.8

Q ss_pred             CceecCCCCCCccccChhhHHHH-HHhhcCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNH-IASHHEK   37 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H-~~~H~~~   37 (217)
                      +||.|  +.|++.|.+.+.|..| +++|+++
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYAC--GLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBC--TTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCC--cccCcccCChHHHHHHHHHHccCC
Confidence            58999  5799999999999999 7899764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.25  E-value=5.2e-07  Score=46.50  Aligned_cols=26  Identities=31%  Similarity=0.701  Sum_probs=23.6

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      +||.|..  |++.|.+.+.|..|+++|.
T Consensus         1 k~~~C~~--C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPE--CPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSS--SSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCC--CCchhCCHHHHHHHHHHhc
Confidence            6899998  9999999999999998843

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.57  E-value=1.2e-07  Score=47.87  Aligned_cols=26  Identities=38%  Similarity=0.827  Sum_probs=23.5

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |||.|  +.||+.|.+.+.|..|+++|+
T Consensus         1 kp~~C--~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVC--ERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            68999  579999999999999999884

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=5e-07  Score=58.55  Aligned_cols=32  Identities=16%  Similarity=0.324  Sum_probs=29.3

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhhCC
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      +|++++||.|.+  |++.|.+...|.+|+++|+.
T Consensus         1 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~   32 (78)
T 2d9h_A            1 GSSGSSGLQCEI--CGFTCRQKASLNWHQRKHAE   32 (78)
T ss_dssp             CCCSCCCEECSS--SCCEESSHHHHHHHHHHHHH
T ss_pred             CCCCCcCeECCC--CCCeeCCHHHHHHHHHHhhc
Confidence            478999999999  99999999999999998664

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.24  E-value=1.6e-07  Score=50.18  Aligned_cols=24  Identities=33%  Similarity=0.771  Sum_probs=13.4

Q ss_pred             CCeecCcccccccccChHHHHHHHHh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      +||.|..  |++.|.+.+.|.+|+++
T Consensus         1 kp~~C~~--C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            1 YAFACPA--CPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CCSSSSS--SCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCC--CCcccCCHHHHHHHHHH
Confidence            3555555  55555555555555554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.55  E-value=1.4e-07  Score=47.68  Aligned_cols=25  Identities=28%  Similarity=0.840  Sum_probs=22.9

Q ss_pred             CCeecCcccccccccChHHHHHHHHhh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      |||.|..  |++.|.+.+.|..|+++|
T Consensus         1 kp~~C~~--C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCER--CGKRFVQSSQLANHIRHH   25 (26)
Confidence            6899998  999999999999999874

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.22  E-value=2.1e-07  Score=59.53  Aligned_cols=33  Identities=21%  Similarity=0.529  Sum_probs=29.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      +++|++++||.|  +.|++.|.+...|..|+++|+
T Consensus        41 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           41 IRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             HHHHHCCCCEEC--TTTCCEESCHHHHHHHHTTCC
T ss_pred             HHhhCCCCCeEC--CCCCchhCCHHHHHHHHHhcC
Confidence            357999999999  579999999999999999984

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.20  E-value=5.9e-07  Score=46.12  Aligned_cols=26  Identities=35%  Similarity=0.602  Sum_probs=23.7

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      +||.|..  |++.|.+.+.|..|+++|+
T Consensus         1 k~~~C~~--C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPH--CDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSS--CCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCC--CCcccCCHHHHHHHHHHhc
Confidence            6899998  9999999999999999854

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.19  E-value=9.5e-07  Score=45.35  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=23.7

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      +||.|.+  |++.|.....|..|+++|.
T Consensus         1 ~~~~C~~--C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRE--CGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTT--TSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCC--CCCccCChhHHHHHHHHhc
Confidence            6899998  9999999999999999853

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.16  E-value=1.2e-06  Score=45.06  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.9

Q ss_pred             CCeecC--cccccccccChHHHHHHHHhh
Q 027872           71 RPYACP--YEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        71 kp~~C~--~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      +||.|.  .  |++.|.+.+.|..|+++|
T Consensus         1 k~~~C~~~~--C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            1 MVYVCHFEN--CGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CCEEECSTT--TCEEESSHHHHHHHHGGG
T ss_pred             CCCCCcCCc--CcCccCCHHHHHHHHHHh
Confidence            589998  7  999999999999999884

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.45  E-value=2.6e-07  Score=48.07  Aligned_cols=27  Identities=22%  Similarity=0.616  Sum_probs=23.9

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhhC
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      ++||.|..  |++.|.+.+.|..|+++|+
T Consensus         1 ~k~~~C~~--C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIH--CQRQFADPGALQRHVRIHT   27 (30)
Confidence            47899998  9999999999999998743

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.15  E-value=1.2e-06  Score=45.44  Aligned_cols=28  Identities=36%  Similarity=0.718  Sum_probs=23.6

Q ss_pred             CCeecCcccccccccChHHHHHH-HHhhCCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLH-LKREHPGH  101 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H-~~~~h~~~  101 (217)
                      +||.|..  |++.|.+.+.|..| +++ |.+.
T Consensus         1 k~~~C~~--C~k~f~~~~~l~~H~~~~-H~~~   29 (30)
T 1paa_A            1 KAYACGL--CNRAFTRRDLLIRHAQKI-HSGN   29 (30)
T ss_dssp             CCSBCTT--TCCBCSSSHHHHHHHTTT-SCCC
T ss_pred             CCcCCcc--cCcccCChHHHHHHHHHH-ccCC
Confidence            5899998  99999999999999 455 6553

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.15  E-value=9.7e-07  Score=44.66  Aligned_cols=24  Identities=25%  Similarity=0.725  Sum_probs=21.5

Q ss_pred             CeecCcccccccccChHHHHHHHHhh
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      ||+|..  |++.|.+.+.|.+|+++|
T Consensus         1 ~~~C~~--C~k~f~~~~~l~~H~~~h   24 (27)
T 1znf_A            1 XYKCGL--CERSFVEKSALSRHQRVH   24 (27)
T ss_dssp             -CBCSS--SCCBCSSHHHHHHHGGGT
T ss_pred             CccCCC--CCCcCCCHHHHHHHHHHc
Confidence            689998  999999999999999874

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.42  E-value=3e-07  Score=47.56  Aligned_cols=25  Identities=28%  Similarity=0.699  Sum_probs=22.7

Q ss_pred             CCeecCcccccccccChHHHHHHHHhh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      +||.|.+  |++.|.+.+.|..|+++|
T Consensus         1 k~~~C~~--C~k~f~~~~~l~~H~~~H   25 (29)
T 2lvt_A            1 KPCQCVM--CGKAFTQASSLIAHVRQH   25 (29)
Confidence            5899998  999999999999999874

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.66  E-value=5.3e-05  Score=48.83  Aligned_cols=43  Identities=21%  Similarity=0.244  Sum_probs=36.0

Q ss_pred             CCCcccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           57 PKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        57 ~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      +..|..|+++|.+++||.|.+  |++.|. ...|..|+ . |.+..+.
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~--C~~~~~-~~~L~~H~-~-~c~~~~~   44 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQH--CDLELS-ILKLKEHE-D-YCGARTE   44 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSS--SCCEEC-HHHHHHHH-H-HHHHCEE
T ss_pred             chHHHhhCcccCCCcccCCcc--cChHhh-HHHHHHHH-h-HcCCCce
Confidence            457889999999999999998  999994 99999998 5 4555543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.29  E-value=4.7e-05  Score=53.82  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=27.9

Q ss_pred             cccCCCCCCeecCcccccccccChHHHHHHHHh
Q 027872           64 YGSASSERPYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        64 ~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      -..|+|++||.|..  |+|.|.+.+.|..|+++
T Consensus        42 ded~tGekpfyC~~--C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           42 DPDLPGGGLHRCLA--CARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             CSSSGGGGCSEETT--TTEECSSHHHHHHHTTC
T ss_pred             cccCCCCcceEccc--CcchhCCHHHHHHHHhh
Confidence            35679999999998  99999999999999875

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.12  E-value=9.2e-05  Score=52.31  Aligned_cols=30  Identities=23%  Similarity=0.481  Sum_probs=27.1

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhh
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      .|+|++||.|  ..|+|.|.+...|..|+++.
T Consensus        44 d~tGekpfyC--~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRC--LACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEE--TTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEc--ccCcchhCCHHHHHHHHhhh
Confidence            5899999999  57999999999999998865

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.01  E-value=0.0005  Score=49.02  Aligned_cols=80  Identities=19%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             CceecCCCCCCccccChhhHHHHH--HhhcCC-CCcccCCc-CCCCCCCcccCCCCcccccccCCCCCCeecCccccccc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHI--ASHHEK-NAAVEVPR-YATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKA   83 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~--~~H~~~-kp~~c~~~-~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~   83 (217)
                      +++.|.  .|...|.+...+..|.  +.|... +.|.+... ....-.+.+..    ..+...+.+.+.|-|.+  |++.
T Consensus        31 ~~~~C~--~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~C~~--C~~~  102 (127)
T 1zu1_A           31 SDTQCK--VCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKA----APAEISDGEDRSKCCPV--CNMT  102 (127)
T ss_dssp             CSSEET--TTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSC----CSSCCSSCCCTTTEETT--TTEE
T ss_pred             CCCcCc--CCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCC----CccccccCCCCCeEcCC--CCCE
Confidence            678994  7999999999999998  677543 33332100 00111122221    12345567888999998  9999


Q ss_pred             ccChHHHHHHHH
Q 027872           84 YIHEYKLKLHLK   95 (217)
Q Consensus        84 F~~~~~L~~H~~   95 (217)
                      |.....|..|+.
T Consensus       103 f~s~~~~~~H~~  114 (127)
T 1zu1_A          103 FSSPVVAESHYI  114 (127)
T ss_dssp             CSSHHHHHHHHT
T ss_pred             eCCHHHHHHHHC
Confidence            999999999985

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.0018  Score=40.22  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=28.1

Q ss_pred             ccCCCC------ceecCCCCCCccccChhhHHHHHHhh
Q 027872            3 THSQEN------YHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         3 ~Htgek------p~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      .|.+.+      +|.|.|..|++.+.....|..|+++.
T Consensus        26 ~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A           26 DHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             HSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             hccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            466665      89999999999999999999999975

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.53  E-value=0.0081  Score=34.44  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             CCeecCcccccccccChHHHHHHHHh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      -+|.|+.  |+..|.....|+.||+.
T Consensus        11 ~~~~CPr--Cn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPR--CNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTT--TCCCCSSHHHHHHHHHH
T ss_pred             CceeCCc--ccccccchHHHHhhhhh
Confidence            6899998  99999999999999986

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.20  E-value=0.012  Score=33.78  Aligned_cols=25  Identities=24%  Similarity=0.630  Sum_probs=22.6

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhh
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      -+|.|  |.|++.|.....|+.||+.-
T Consensus        11 ~~~~C--PrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKIC--PRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCC--TTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeC--CcccccccchHHHHhhhhhc
Confidence            67999  69999999999999999954

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.36  E-value=0.084  Score=28.17  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=24.4

Q ss_pred             CeecCcccccccccChHHHHHHHHhhCCC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      .|.|++  |.+.|.....|..|....|..
T Consensus         5 GFiCP~--C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQ--CMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTT--TCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcH--HHHHcCCHHHHHHHHHhcccc
Confidence            499999  999999999999999887764

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.64  E-value=0.041  Score=35.22  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=25.4

Q ss_pred             CCeecCccccccccc-------ChHHHHHHHHhhCCCCCCcc
Q 027872           71 RPYACPYEGCEKAYI-------HEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        71 kp~~C~~~~C~k~F~-------~~~~L~~H~~~~h~~~~~~~  105 (217)
                      .--.|.+  |++.|.       -.++|.+|++..|..++...
T Consensus        27 ~~A~Ck~--C~k~ls~g~~s~~GTS~L~rHL~~~H~~e~~~~   66 (76)
T 2djr_A           27 QYATCRL--CGRQVSRGPGVNVGTTALWKHLKSMHREELEKS   66 (76)
T ss_dssp             SCEEESS--SCCBCCCCSSCCSSSCHHHHHHHHTTHHHHHHT
T ss_pred             CEEECCC--CCCccCCCCCCCCchHHHHHHHHHHCHHHHHhc
Confidence            3468998  999987       25789999999887765443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=90.33  E-value=0.16  Score=37.38  Aligned_cols=82  Identities=17%  Similarity=0.157  Sum_probs=50.6

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccChH
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEY   88 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~   88 (217)
                      ...|++..|+..+. ...|..|.. .-..++..|     ..|+..+ ....|..|+...-..++..|++  |+..|. ..
T Consensus        82 ~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C-----~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~--C~~~~~-~~  150 (170)
T 3hcs_A           82 MVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDC-----PQCQRPF-QKFHINIHILKDCPRRQVSCDN--CAASMA-FE  150 (170)
T ss_dssp             EEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEEC-----TTTCCEE-EGGGHHHHHHHTCTTCEEECTT--TCCEEE-GG
T ss_pred             ccCCCCCCCCceec-HhHHHHHHh-cCCceeeEC-----CCCChHH-HHHHHHHHhhhhCCCCCeECCC--CCCccC-HH
Confidence            34565446766655 345666653 223344455     4666655 4556777877677778888987  988775 45


Q ss_pred             HHHHHHHhhCCCCC
Q 027872           89 KLKLHLKREHPGHM  102 (217)
Q Consensus        89 ~L~~H~~~~h~~~~  102 (217)
                      .|..|+.+ +.|..
T Consensus       151 ~l~~H~~~-~~~~~  163 (170)
T 3hcs_A          151 DKEIHDQN-CPLAL  163 (170)
T ss_dssp             GHHHHHTT-CCC--
T ss_pred             HHHhHHHh-CcChh
Confidence            78888876 55543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=85.66  E-value=0.53  Score=25.01  Aligned_cols=24  Identities=33%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             ceecCCCCCCccccChhhHHHHHH-hh
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIA-SH   34 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~-~H   34 (217)
                      .|.|  |+|.+.|.+...|..|.. .|
T Consensus         5 GFiC--P~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFIC--PQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEEC--TTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCC--cHHHHHcCCHHHHHHHHHhcc
Confidence            4999  689999999999999955 44

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=84.10  E-value=0.51  Score=30.79  Aligned_cols=27  Identities=30%  Similarity=0.764  Sum_probs=22.1

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCCCc
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKNAA   40 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~   40 (217)
                      --.|  -+|||.|..   |++|+++|+|..|.
T Consensus        21 ~iiC--lecGK~fK~---LkRHL~~~hgltpe   47 (87)
T 2jsp_A           21 HIVC--LECGGSFKS---LKRHLTTHHSMTPE   47 (87)
T ss_dssp             CEEC--TBTCCEESB---HHHHHHHTTCSCHH
T ss_pred             ceEe--cccchhhHH---HHHHHHHccCCCHH
Confidence            3578  489999995   88999998787664

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=83.62  E-value=0.53  Score=30.71  Aligned_cols=25  Identities=28%  Similarity=0.570  Sum_probs=20.1

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhhCC
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      ..-..|-.  ||+.|.   .|++|++++|+
T Consensus        19 ~d~iiCle--cGK~fK---~LkRHL~~~hg   43 (87)
T 2jsp_A           19 DDHIVCLE--CGGSFK---SLKRHLTTHHS   43 (87)
T ss_dssp             SSCEECTB--TCCEES---BHHHHHHHTTC
T ss_pred             CCceEecc--cchhhH---HHHHHHHHccC
Confidence            34568998  999999   68899998553

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=80.84  E-value=0.58  Score=34.36  Aligned_cols=57  Identities=9%  Similarity=0.114  Sum_probs=40.9

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCe
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPY   73 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~   73 (217)
                      ++..|  +.|+..+. ...|..|+...-..++..|     ..|+..|. ...|..|..+++|..++
T Consensus       109 ~~v~C--~~C~~~~~-r~~l~~H~~~~C~~r~~~C-----~~C~~~~~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          109 ALMDC--PQCQRPFQ-KFHINIHILKDCPRRQVSC-----DNCAASMA-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             SEEEC--TTTCCEEE-GGGHHHHHHHTCTTCEEEC-----TTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             eeeEC--CCCChHHH-HHHHHHHhhhhCCCCCeEC-----CCCCCccC-HHHHHhHHHhCcChhhh
Confidence            56789  57999884 6779999987777777777     67777653 35678899888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	1e-04
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	3e-04
d2glia5	29	g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo	5e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.001
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	0.002
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.002

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 10 HICPYPDCGKRYAHEYKLKNHIASH 34
          ++CP+  C K++A    LK+HI +H
Sbjct: 3  YVCPFDGCNKKFAQSTNLKSHILTH 27

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 71 RPYACPYEGCEKAYIHEYKLKLHLK 95
          RPY CP++GC K +     LK H+ 
Sbjct: 1  RPYVCPFDGCNKKFAQSTNLKSHIL 25

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 5e-04
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 71 RPYACPYEGCEKAYIHEYKLKLHLKREH 98
          +PY C   GC K Y     L+ H+K  H
Sbjct: 1  KPYVCKLPGCTKRYTDPSSLRKHVKTVH 28

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 70 ERPYACPYEGCEKAYIHEYKLKLHLK 95
          +RPY+C + GC+KA++  + L  H K
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRHKK 26

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 2  KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKN 38
          +TH+ E  + C    C K +  +  L  H   +H+ N
Sbjct: 1  RTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPN 35

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 71  RPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
           RPYACP E C++ +     L  H  R H G
Sbjct: 1   RPYACPVESCDRRFSRSADLTRH-IRIHTG 29

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 68  SSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 100
           S  +PY C    C K +     L  H+K+ H  
Sbjct: 1   SVGKPYICQS--CGKGFSRPDHLNGHIKQVHTS 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.7
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.47
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.45
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.45
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.44
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.43
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.42
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.4
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.39
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.37
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.36
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.36
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.36
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.35
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.34
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.32
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.31
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.31
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.31
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.24
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.23
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.23
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.22
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.21
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.19
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.18
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.16
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.16
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.16
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.11
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.11
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.1
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.07
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.05
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.01
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.98
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.86
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.82
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.68
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.57
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.56
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.49
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.48
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.4
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.36
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.35
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.3
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.24
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	98.22
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.12
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.11
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.08
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.07
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.03
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.01
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.0
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.96
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.91
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.87
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.83
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.76
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.75
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.72
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.69
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.6
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.58
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.49
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.48
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.48
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.44
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.41
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.31
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.22
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.19
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.17
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.15
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.13
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	97.08
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.03
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.02
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.99
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.99
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.85
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.82
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.76
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.7
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.56
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	96.3
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.23
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.03
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.0
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.91
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.88
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.74
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.66
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.65
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.26
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	95.02
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.82
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.72
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.46
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.33
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.88
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	93.68
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.12
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.57
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.23
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.86
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	90.81
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.53
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	89.31
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	85.91
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	85.4
d1y0jb1	36	U-shaped transcription factor, different fingers {	85.02
d1y0jb1	36	U-shaped transcription factor, different fingers {	84.32
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	84.17
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	82.41
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	81.95

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6e-18  Score=102.32  Aligned_cols=53  Identities=30%  Similarity=0.654  Sum_probs=49.4

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCCCCcccCCcCCCCCCCcccCCCCcccccccCCCCCCeecCcccccccccC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIH   86 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c~~~~~~~~~~~~~~~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~   86 (217)
                      ||||+|  . ||++|.+...|..|+++|                                 +|++||.|.+  ||++|.+
T Consensus         1 EK~y~C--~-Cgk~F~~~~~l~~H~~~H---------------------------------t~ekpy~C~~--C~k~F~~   42 (53)
T d2csha1           1 DKLYPC--Q-CGKSFTHKSQRDRHMSMH---------------------------------LGLRPYGCGV--CGKKFKM   42 (53)
T ss_dssp             CCCEEC--T-TSCEESSHHHHHHHHHHH---------------------------------SCCCSEECTT--TSCEESS
T ss_pred             CcCCCC--C-CCCeECCHHHhHHHhhcc---------------------------------ccccCCcCCC--cCCEecC
Confidence            699999  4 999999999999999999                                 5789999999  9999999


Q ss_pred             hHHHHHHHHhh
Q 027872           87 EYKLKLHLKRE   97 (217)
Q Consensus        87 ~~~L~~H~~~~   97 (217)
                      .+.|.+||++|
T Consensus        43 ~~~L~~H~r~H   53 (53)
T d2csha1          43 KHHLVGHMKIH   53 (53)
T ss_dssp             SHHHHHHHTTT
T ss_pred             HHHHHHHHhcC
Confidence            99999999874

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.7e-14  Score=77.06  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      ||||+|||+|  ..|||+|.++++|..|+++|+|+
T Consensus         1 IHTgekpy~C--~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEEC--SSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeC--CCCCCEeCchHHhHhhccccCCC
Confidence            7999999999  58999999999999999999874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.4e-14  Score=77.73  Aligned_cols=35  Identities=26%  Similarity=0.660  Sum_probs=32.2

Q ss_pred             ccCCCCCCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           65 GSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      |+|+|+|||+|.+  |+++|+++++|++|++++|+..
T Consensus         1 R~HTgekP~~C~~--C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSCCCSEECTT--TCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCCCCCEeCCC--CcccccchHHHHHHcccccCCC
Confidence            5799999999999  9999999999999998888764

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-14  Score=79.40  Aligned_cols=37  Identities=27%  Similarity=0.501  Sum_probs=34.1

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      +|+++|+++|||+|..  |||+|.+.++|.+|+++ |+|+
T Consensus         2 rH~~~Ht~ekpy~C~~--CgK~F~~~s~L~~H~r~-HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRT-HTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSS--SCCBCSCHHHHHHHHTT-TCCS
T ss_pred             ccCcccCCCCCEecCC--CCceeeCHHHHHHhCcc-CCCC
Confidence            6899999999999998  99999999999999987 6663

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.5e-14  Score=77.79  Aligned_cols=34  Identities=26%  Similarity=0.536  Sum_probs=31.7

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      |+|||+|||+|  .+|||+|.++++|..|+++|+++
T Consensus         1 R~HTgekPy~C--~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEEC--SSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEEC--CCCCCCcCCHhHHHHhCcccCCC
Confidence            79999999999  58999999999999999999754

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-14  Score=79.27  Aligned_cols=35  Identities=23%  Similarity=0.505  Sum_probs=32.7

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      +++|+++|||+|  +.|||+|.+.++|..|+++|+|+
T Consensus         4 ~~~Ht~ekpy~C--~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           4 EWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCCCCSCSSBC--SSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CcccCCCCCEec--CCCCceeeCHHHHHHhCccCCCC
Confidence            689999999999  58999999999999999999874

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=4.2e-14  Score=78.00  Aligned_cols=34  Identities=29%  Similarity=0.730  Sum_probs=31.7

Q ss_pred             cccccCCCCCCeecCcccccccccChHHHHHHHHhh
Q 027872           62 GVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        62 ~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      .|.|+|+|+|||+|.+  |+++|+++++|.+|+++|
T Consensus         1 gh~R~HTgeKPy~C~~--C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           1 GSTRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CCSSTTCCSSSBCCTT--TCCCBSSHHHHHHHHGGG
T ss_pred             CCCCccCCccCeEeCC--CCCEecCHHHHHHHHhcC
Confidence            3789999999999999  999999999999999884

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.9e-14  Score=75.95  Aligned_cols=34  Identities=35%  Similarity=0.773  Sum_probs=31.0

Q ss_pred             ccCCCCCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           65 GSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        65 ~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      |+|+|+|||+|.+  ||++|++.++|.+|+++|+..
T Consensus         1 R~HTgekPy~C~~--C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSS--SSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCC--CCCCcCCHhHHHHhCcccCCC
Confidence            5799999999999  999999999999999996643

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-13  Score=75.32  Aligned_cols=33  Identities=30%  Similarity=0.686  Sum_probs=30.8

Q ss_pred             eecCCCCCCccccChhhHHHHHHhhcCCCCccc
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASHHEKNAAVE   42 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~~c   42 (217)
                      |.|.|+.|+|+|.++++|++|+++|+|+|||+|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeC
Confidence            889988999999999999999999988888877

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-13  Score=76.41  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=30.1

Q ss_pred             CCCCceecCCCCCCccccChhhHHHHHH-hhcCCCCccc
Q 027872            5 SQENYHICPYPDCGKRYAHEYKLKNHIA-SHHEKNAAVE   42 (217)
Q Consensus         5 tgekp~~C~~~~C~k~F~~~~~L~~H~~-~H~~~kp~~c   42 (217)
                      +-+|||+|  ..|||+|.+.++|++|++ +|+++|||+|
T Consensus         1 s~~Kpy~C--~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           1 SVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             CSSCCEEC--SSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCCCCccC--CCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            35899999  589999999999999986 6876666655

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.6e-13  Score=75.58  Aligned_cols=33  Identities=21%  Similarity=0.458  Sum_probs=31.1

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      +|+|||+|||+|  +.|+|+|.++++|..|+++|.
T Consensus         3 ~R~HTgeKPy~C--~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           3 TRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             SSTTCCSSSBCC--TTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCccCCccCeEe--CCCCCEecCHHHHHHHHhcCc
Confidence            589999999999  579999999999999999995

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=1.3e-13  Score=79.96  Aligned_cols=36  Identities=25%  Similarity=0.682  Sum_probs=33.5

Q ss_pred             ccCCCCceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            3 THSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         3 ~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      .|+|+|||+|.|+.|+|+|.++++|+.|+++|+|+|
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            599999999987789999999999999999998864

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-13  Score=72.19  Aligned_cols=31  Identities=26%  Similarity=0.659  Sum_probs=29.2

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      |||+|+|+.|+|+|.+.++|+.|+++|+|+|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            7999999999999999999999999998764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.6e-13  Score=74.12  Aligned_cols=32  Identities=34%  Similarity=0.526  Sum_probs=29.0

Q ss_pred             cccCCCCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            2 KTHSQENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         2 r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |+|||+|||+|  +.|+|+|.++++|+.|++.++
T Consensus         1 R~HTgekP~~C--~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYEC--YICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEEC--TTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeC--CCCcccccchHHHHHHccccc
Confidence            79999999999  579999999999999987654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.2e-13  Score=72.69  Aligned_cols=32  Identities=38%  Similarity=0.668  Sum_probs=29.6

Q ss_pred             cCCCCCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           66 SASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        66 ~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      +|+|+|||+|..  ||++|.+.++|.+|+++ |+|
T Consensus         1 IHTgekpy~C~~--Cgk~F~~~~~L~~H~r~-Htg   32 (33)
T d1x6ea1           1 IHSGEKPYGCVE--CGKAFSRSSILVQHQRV-HTG   32 (33)
T ss_dssp             TTTTCCCEECSS--SCCEESSHHHHHHHHHG-GGC
T ss_pred             CcCCCCCeeCCC--CCCEeCchHHhHhhccc-cCC
Confidence            589999999999  99999999999999998 655

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.9e-13  Score=73.13  Aligned_cols=32  Identities=16%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             cCCCCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            4 HSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         4 Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      |||+|||+|  ++|+|+|.++++|++|+++|+..
T Consensus         2 ~TGekPy~C--~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVC--RICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEEC--SSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccC--CCCCCcccChHHHHHHccccCCc
Confidence            899999999  57999999999999999999753

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.5e-13  Score=69.84  Aligned_cols=30  Identities=27%  Similarity=0.780  Sum_probs=28.4

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      |||+|.|+.|+|+|.++++|++|+|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            799999999999999999999999999874

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=2.1e-13  Score=79.09  Aligned_cols=43  Identities=16%  Similarity=0.510  Sum_probs=36.9

Q ss_pred             CCCcccccccCCCCCCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           57 PKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        57 ~~~l~~H~~~H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      ...|.+|+. |+++|||+|.+++|+|+|+++++|++|+++ |+|+
T Consensus         4 ~~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~-Htge   46 (47)
T d1ncsa_           4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQT-HLED   46 (47)
T ss_dssp             CSSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHH-HTTT
T ss_pred             cchhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccc-ccCC
Confidence            345677775 999999999888899999999999999998 6654

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=7.1e-13  Score=71.59  Aligned_cols=32  Identities=31%  Similarity=0.631  Sum_probs=29.1

Q ss_pred             CCCCCCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           67 ASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        67 H~~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      |+|+|||+|.+  |+|.|+++++|++|+++ |+..
T Consensus         2 ~TGekPy~C~~--C~k~F~~~~~L~~H~r~-Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRI--CLSAFTTKANCARHLKV-HTDT   33 (35)
T ss_dssp             CSCCSCEECSS--SCCEESSHHHHHHHHGG-GTSC
T ss_pred             CCCCccccCCC--CCCcccChHHHHHHccc-cCCc
Confidence            69999999999  99999999999999998 6553

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.4e-13  Score=69.41  Aligned_cols=30  Identities=33%  Similarity=0.671  Sum_probs=28.3

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      |||+|.|+.|+|+|.++++|++|+|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            799999889999999999999999999874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.8e-12  Score=66.84  Aligned_cols=29  Identities=28%  Similarity=0.614  Sum_probs=27.8

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      |||+|.|+.|+|+|.+.++|++|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            79999999999999999999999999985

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=2.3e-12  Score=65.88  Aligned_cols=28  Identities=21%  Similarity=0.482  Sum_probs=26.4

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      ||||+|  +.|+|+|.++++|..|+|+|||
T Consensus         1 EKPy~C--~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQC--RICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEEC--TTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccC--CCCcCEecccccccccCCCccC
Confidence            799999  5899999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.23  E-value=2.4e-12  Score=66.58  Aligned_cols=29  Identities=28%  Similarity=0.606  Sum_probs=26.9

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      |||+|  ++|+|+|.++++|++|+++|+|+|
T Consensus         1 kp~~C--~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCC--TTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCC--CCCCCCCCCchHcccccCcccCCC
Confidence            79999  579999999999999999998875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=3.7e-12  Score=67.18  Aligned_cols=30  Identities=30%  Similarity=0.557  Sum_probs=28.6

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      ||||.|.|+.|+|+|.+.++|++|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            699999999999999999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.2e-12  Score=65.69  Aligned_cols=28  Identities=36%  Similarity=0.844  Sum_probs=26.9

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |||+|.|+.|||+|.+.++|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            7999999999999999999999999995

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6e-12  Score=65.38  Aligned_cols=30  Identities=43%  Similarity=0.935  Sum_probs=27.4

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      |||+|.+++|+|+|+++++|++|+++ |+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS-HTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH-TTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc-CcCC
Confidence            79999999999999999999999998 7663

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.5e-12  Score=65.12  Aligned_cols=29  Identities=34%  Similarity=0.787  Sum_probs=26.8

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      |||.|  ++|||+|.++++|.+|+|+|+|+|
T Consensus         1 Kpy~C--~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFAC--PECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCC--TTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEEC--CcCCCeecchHHhhhhcCccCCcC
Confidence            79999  579999999999999999999864

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.8e-12  Score=65.86  Aligned_cols=29  Identities=34%  Similarity=1.052  Sum_probs=26.7

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      |||+|.+++|+|+|+++++|++|+|+ |+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI-HTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH-HHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccc-cCC
Confidence            79999999999999999999999998 555

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.3e-12  Score=65.48  Aligned_cols=30  Identities=30%  Similarity=0.760  Sum_probs=27.5

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      |||+|++++|+|+|++.++|++|+++ |+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~-Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc-cccc
Confidence            69999988999999999999999998 7765

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=4.7e-12  Score=64.71  Aligned_cols=26  Identities=19%  Similarity=0.707  Sum_probs=24.6

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhh
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      ||||+|.+  |+|+|+++++|.+|+++|
T Consensus         1 EKPy~C~~--C~k~F~~~~~L~~H~r~H   26 (28)
T d1a1ia2           1 QKPFQCRI--CMRNFSRSDHLTTHIRTH   26 (28)
T ss_dssp             CCCEECTT--TCCEESCHHHHHHHHHHH
T ss_pred             CcCccCCC--CcCEecccccccccCCCc
Confidence            69999999  999999999999999984

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8.9e-12  Score=63.43  Aligned_cols=27  Identities=41%  Similarity=1.054  Sum_probs=25.6

Q ss_pred             CCeecCcccccccccChHHHHHHHHhh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      |||+|.++||+|+|++.++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            799999999999999999999999984

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=2.3e-11  Score=64.09  Aligned_cols=28  Identities=39%  Similarity=0.873  Sum_probs=26.5

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhh
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      ||||.|.++||+|+|+++++|++|+++|
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~H   28 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhc
Confidence            6899999999999999999999999984

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=9.4e-12  Score=64.04  Aligned_cols=27  Identities=37%  Similarity=0.920  Sum_probs=25.5

Q ss_pred             CCeecCcccccccccChHHHHHHHHhh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      |||+|.+++|+|+|+++++|++|+++|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~H   27 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIH   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCcc
Confidence            799999999999999999999999984

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.07  E-value=3.8e-11  Score=61.96  Aligned_cols=28  Identities=29%  Similarity=0.733  Sum_probs=25.8

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      |||.|.+  |+|+|++.++|++|+++ |+|+
T Consensus         1 kp~~C~~--C~k~F~~~~~L~~H~r~-HTgE   28 (29)
T d2adra1           1 RSFVCEV--CTRAFARQEHLKRHYRS-HTNE   28 (29)
T ss_dssp             CCBCCTT--TCCCBSCHHHHHHHHHT-TTSS
T ss_pred             CcCCCCC--CCCCCCCchHcccccCc-ccCC
Confidence            7999999  99999999999999998 7765

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=8.4e-11  Score=64.90  Aligned_cols=36  Identities=25%  Similarity=0.537  Sum_probs=30.1

Q ss_pred             CCCCeecCcccccccccChHHHHHHHHhhCCCCCCccc
Q 027872           69 SERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDEN  106 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~~  106 (217)
                      .+|||+|..  |||+|+++++|++|++..|+++.|..+
T Consensus         2 ~~Kpy~C~~--Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           2 VGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             SSCCEECSS--SCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCCCccCCC--CCCCcCChHHhhccCcCccCCCcCcCC
Confidence            468999988  999999999999998766888887654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=5e-11  Score=59.35  Aligned_cols=26  Identities=31%  Similarity=0.570  Sum_probs=24.7

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |||+|  ..|||+|.++++|..|+|+||
T Consensus         1 KPy~C--~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKC--LECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEEC--SSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccC--CCCcCeeccCcccccCccCCC
Confidence            79999  689999999999999999995

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.9e-11  Score=60.87  Aligned_cols=28  Identities=32%  Similarity=0.790  Sum_probs=25.5

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      |||.|.+  |+|+|+++++|.+|+++ |+++
T Consensus         1 Kpy~C~~--C~k~F~~~s~L~~H~r~-Htge   28 (29)
T d1sp1a_           1 KKFACPE--CPKRFMRSDHLSKHIKT-HQNK   28 (29)
T ss_dssp             CCSCCTT--TTCCCSCSHHHHHHHHG-GGCC
T ss_pred             CCEECCc--CCCeecchHHhhhhcCc-cCCc
Confidence            7999999  99999999999999998 6664

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-10  Score=57.60  Aligned_cols=25  Identities=32%  Similarity=0.626  Sum_probs=23.7

Q ss_pred             CCeecCcccccccccChHHHHHHHHhh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      |||+|..  |||+|+++++|.+|+|+|
T Consensus         1 KPy~C~e--CgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLE--CGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSS--SCCEESSHHHHHHHHHHH
T ss_pred             CCccCCC--CcCeeccCcccccCccCC
Confidence            7999998  999999999999999984

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.3e-10  Score=68.13  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.9

Q ss_pred             CcccCCCCceecCCCCCCccccChhhHHHHHHhh
Q 027872            1 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         1 ~r~Htgekp~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      +++|+|++||.|  ++||++|.+.+.|..|+++|
T Consensus        22 ~~~Ht~ekpy~C--~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1          22 MSMHLGLRPYGC--GVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             HHHHSCCCSEEC--TTTSCEESSSHHHHHHHTTT
T ss_pred             hhccccccCCcC--CCcCCEecCHHHHHHHHhcC
Confidence            478999999999  58999999999999999987

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-09  Score=54.05  Aligned_cols=29  Identities=38%  Similarity=0.832  Sum_probs=27.1

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      |||.|++.||+|+++..++|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            79999999999999999999999998774

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.9e-09  Score=57.02  Aligned_cols=32  Identities=28%  Similarity=0.555  Sum_probs=24.7

Q ss_pred             eecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      |.|++++|+++|+++++|++|+++ |+++.|..
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~-Htgekpy~   33 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYI   33 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH-HHTSCCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCe-eCCCCCEe
Confidence            678777788888888888888877 77766654

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.2e-08  Score=48.19  Aligned_cols=26  Identities=38%  Similarity=0.731  Sum_probs=23.9

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      |++|  +.|+|.|+++.+|+.|+|.|+|
T Consensus         1 phkc--~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKC--EVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCB--TTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCcc--chhhhHhcchhHHHHHhhccCC
Confidence            7899  5799999999999999999975

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.56  E-value=2.6e-08  Score=48.42  Aligned_cols=27  Identities=44%  Similarity=0.846  Sum_probs=25.3

Q ss_pred             CCeecCcccccccccChHHHHHHHHhh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      .||+|+.+||++.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            699999999999999999999999874

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=2.3e-08  Score=48.82  Aligned_cols=26  Identities=31%  Similarity=0.676  Sum_probs=24.4

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhh
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      +|||.|.+  ||+.|+++...++|.++|
T Consensus         1 EkPf~C~~--CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDI--CGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTT--TCCEESSHHHHHHHHGGG
T ss_pred             CCCcccch--hhhhhhcchhhhhhhhhc
Confidence            68999999  999999999999999884

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.3e-08  Score=48.51  Aligned_cols=29  Identities=31%  Similarity=0.723  Sum_probs=26.7

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      |||.|+++.|+|+++..+.|+.|+++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            79999999999999999999999998753

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.6e-08  Score=46.57  Aligned_cols=26  Identities=38%  Similarity=0.804  Sum_probs=23.1

Q ss_pred             CeecCcccccccccChHHHHHHHHhhCCC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      |++|.+  |+|.|+++..|+.|||. |+|
T Consensus         1 phkc~~--c~kcfsrkdklk~hmr~-htg   26 (26)
T d2dmda2           1 PHKCEV--CGKCFSRKDKLKTHMRC-HTG   26 (26)
T ss_dssp             CCCBTT--TTBCCCCHHHHHHHGGG-CCC
T ss_pred             CCccch--hhhHhcchhHHHHHhhc-cCC
Confidence            679998  99999999999999987 553

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.4e-08  Score=49.65  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=28.1

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCCCCc
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAA   40 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~kp~   40 (217)
                      .|...|  .+|||.|...+.|.+|...|+++|||
T Consensus         3 rk~~~c--e~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           3 RKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CCSEEE--TTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             chhhhH--HHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            356789  68999999999999999999888776

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.40  E-value=1.2e-07  Score=46.21  Aligned_cols=30  Identities=20%  Similarity=0.355  Sum_probs=28.3

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      |||.|.|..|.|.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            799999999999999999999999999874

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=1.4e-07  Score=45.95  Aligned_cols=27  Identities=30%  Similarity=0.571  Sum_probs=25.0

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      +|||.|  .+||+.|.++...++|.++|.
T Consensus         1 EkPf~C--~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFAC--DICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEEC--TTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCccc--chhhhhhhcchhhhhhhhhcc
Confidence            699999  589999999999999999984

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.6e-07  Score=46.46  Aligned_cols=29  Identities=24%  Similarity=0.762  Sum_probs=26.1

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      +|||.|++  |+..|.++..+.-|.|.|.++
T Consensus         1 ekp~~cpi--c~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPV--CGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETT--TTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccch--HHHHhhccccceEeeecccCc
Confidence            58999999  999999999999999986544

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.7e-08  Score=47.65  Aligned_cols=29  Identities=17%  Similarity=0.424  Sum_probs=26.5

Q ss_pred             CceecCCCCCCccccChhhHHHHH-HhhcC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHI-ASHHE   36 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~-~~H~~   36 (217)
                      |||.|.|+.|.|+|+..+.-..|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            799999999999999999999997 88853

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.2e-07  Score=44.68  Aligned_cols=28  Identities=36%  Similarity=0.787  Sum_probs=24.8

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      |-+.|  ..|||+|.-++.|++|..+|+++
T Consensus         1 r~hvc--~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           1 RVHVC--AECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CCEEC--TTTCCEESSHHHHHHHGGGTSCC
T ss_pred             CcchH--HHHhHHHHHHHHHHHHhhcccCC
Confidence            35789  68999999999999999999864

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.24  E-value=4.1e-07  Score=44.08  Aligned_cols=27  Identities=33%  Similarity=0.556  Sum_probs=25.7

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhh
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      .||+|+...|+|.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589999999999999999999999998

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.3e-07  Score=47.51  Aligned_cols=29  Identities=24%  Similarity=0.742  Sum_probs=27.0

Q ss_pred             CCCCeecCcccccccccChHHHHHHHHhh
Q 027872           69 SERPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      .+|||.|..+||+.+|.....|..|.+.|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            58999999999999999999999999875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.9e-07  Score=44.67  Aligned_cols=28  Identities=32%  Similarity=0.695  Sum_probs=26.1

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      +|||.|  ++|+.+|.++..+.-|.|.|.|
T Consensus         1 ekp~~c--pic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSC--PVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEE--TTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCccc--chHHHHhhccccceEeeecccC
Confidence            689999  6899999999999999999965

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.3e-07  Score=44.92  Aligned_cols=26  Identities=35%  Similarity=0.756  Sum_probs=24.1

Q ss_pred             CCeecCcccccccccChHHHHHHH-Hh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHL-KR   96 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~-~~   96 (217)
                      |||.|.++||.|+|+.++...+|+ |+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT   27 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT   27 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc
Confidence            799999999999999999999998 55

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1e-06  Score=42.72  Aligned_cols=28  Identities=36%  Similarity=0.645  Sum_probs=24.7

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      .|.|+  .||......+-|+.|+|+|++++
T Consensus         1 kYvC~--~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICE--ECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCT--TTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             Ccccc--ccCcccCCHHHHHHHHHHhcCCC
Confidence            38995  59999999999999999998753

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.2e-06  Score=42.28  Aligned_cols=28  Identities=25%  Similarity=0.346  Sum_probs=25.9

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      +|||+|+  .|...-..++.|..|+|.|+|
T Consensus         1 erpfkcq--lcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQ--ICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECS--SSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceee--ecccccCCchheEEeeecccC
Confidence            6899996  799999999999999999986

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.5e-06  Score=41.97  Aligned_cols=28  Identities=39%  Similarity=0.836  Sum_probs=25.2

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      ++||+|++  |..+-..++.|..|+|+ |+|
T Consensus         1 erpfkcql--csy~srnssqltvhlr~-htg   28 (29)
T d2dmda3           1 ERPFKCQI--CPYASRNSSQLTVHLRS-HTG   28 (29)
T ss_dssp             CCCEECSS--SSCEESSHHHHHHHHTT-CCS
T ss_pred             CCcceeee--cccccCCchheEEeeec-ccC
Confidence            58999999  99999999999999987 655

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.1e-06  Score=41.83  Aligned_cols=29  Identities=34%  Similarity=0.714  Sum_probs=26.3

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      |||.|++  |....+.+++|+.|+++.|..+
T Consensus         1 kpy~cqy--c~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQY--CEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSS--SSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccc--cccccccchhhhhhhhcccccC
Confidence            6999999  9999999999999999988654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.01  E-value=2.4e-06  Score=42.51  Aligned_cols=29  Identities=31%  Similarity=0.766  Sum_probs=26.3

Q ss_pred             CeecCcccccccccChHHHHHHHHhhCCCCC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREHPGHM  102 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~  102 (217)
                      ||.|.+  |++.|+++..|.+|++..|.|..
T Consensus         1 Pf~C~~--C~R~FaRrDLlLRH~qKlH~g~c   29 (31)
T d2adra2           1 PYPCGL--CNRAFTRRDLLIRHAQKIHSGNL   29 (31)
T ss_dssp             SEECTT--TCCEESSHHHHHHHHTTTSCCSS
T ss_pred             Cccccc--ccchhhHHHHHHHHHHHHhcCcC
Confidence            899999  99999999999999998888754

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=2.5e-06  Score=40.34  Aligned_cols=26  Identities=35%  Similarity=0.738  Sum_probs=23.6

Q ss_pred             ecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872           11 ICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus        11 ~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      +|  +.|.|.|.+++.|+.|-|.|+|++
T Consensus         2 qc--p~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 EC--PTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CC--TTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cC--cchHHHHHHhHhhhhccccccCCC
Confidence            58  689999999999999999998764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.1e-06  Score=44.20  Aligned_cols=30  Identities=20%  Similarity=0.597  Sum_probs=26.0

Q ss_pred             CceecCCCCCC---ccccChhhHHHHHHhhcCC
Q 027872            8 NYHICPYPDCG---KRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         8 kp~~C~~~~C~---k~F~~~~~L~~H~~~H~~~   37 (217)
                      |-|.|.|..|.   +.|...+.|..|+|+|||+
T Consensus         1 k~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            45889999996   6699999999999999874

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.9e-06  Score=40.11  Aligned_cols=25  Identities=32%  Similarity=0.672  Sum_probs=23.6

Q ss_pred             CCeecCcccccccccChHHHHHHHHhh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      |||+|..  |..+-..+++|++|+|+|
T Consensus         2 kp~kck~--cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKT--CDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSS--SCCEESSHHHHHHHHHHS
T ss_pred             CCccccc--ccchhcchhhHhhhhhcc
Confidence            8999999  999999999999999984

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.87  E-value=2.7e-06  Score=41.36  Aligned_cols=29  Identities=38%  Similarity=0.793  Sum_probs=25.6

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      |||.|..+||.|.|..-..|.+|..+ |+|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~t-htg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLT-HTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHH-HHT
T ss_pred             CCcCcccccccccchhhhhhhhhhcc-ccC
Confidence            68999999999999999999999876 544

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=9.1e-06  Score=42.69  Aligned_cols=31  Identities=32%  Similarity=0.719  Sum_probs=28.5

Q ss_pred             CCCCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            5 SQENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         5 tgekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      +.+|||.|..+.|+.+|.+...|..|...|.
T Consensus         2 ~ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3589999999999999999999999999985

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=9.7e-06  Score=43.19  Aligned_cols=26  Identities=23%  Similarity=0.694  Sum_probs=23.6

Q ss_pred             CCCCCeecCcccccccccChHHHHHHHH
Q 027872           68 SSERPYACPYEGCEKAYIHEYKLKLHLK   95 (217)
Q Consensus        68 ~~ekp~~C~~~~C~k~F~~~~~L~~H~~   95 (217)
                      +|-|||.|.+  |+|.|.-+.++.+|..
T Consensus         1 TGiKPYeC~~--C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNI--CAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSS--SCCEESCHHHHHHHHH
T ss_pred             CCCCceeccc--hhhhhhhHHHHHHhhh
Confidence            4779999988  9999999999999964

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.1e-05  Score=39.24  Aligned_cols=26  Identities=38%  Similarity=0.659  Sum_probs=23.5

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |||.|+|  |..+....++|+.|+++-+
T Consensus         1 kpy~cqy--c~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQY--CEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSS--SSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccc--cccccccchhhhhhhhccc
Confidence            6999976  9999999999999999764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.1e-05  Score=42.95  Aligned_cols=27  Identities=22%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             CCCCceecCCCCCCccccChhhHHHHHHh
Q 027872            5 SQENYHICPYPDCGKRYAHEYKLKNHIAS   33 (217)
Q Consensus         5 tgekp~~C~~~~C~k~F~~~~~L~~H~~~   33 (217)
                      ||-|||.|  .+|+|.|.+...+.+|.-.
T Consensus         1 TGiKPYeC--~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYEC--NICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEEC--SSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceec--cchhhhhhhHHHHHHhhhh
Confidence            68899999  6899999999999999543

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.4e-05  Score=38.21  Aligned_cols=26  Identities=38%  Similarity=0.636  Sum_probs=22.1

Q ss_pred             CeecCcccccccccChHHHHHHHHhhCCC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      -+.|..  |||+|..++.|++|+.+ |++
T Consensus         2 ~hvc~e--cgkaf~essklkrh~lv-htg   27 (28)
T d1ubdc2           2 VHVCAE--CGKAFVESSKLKRHQLV-HTG   27 (28)
T ss_dssp             CEECTT--TCCEESSHHHHHHHGGG-TSC
T ss_pred             cchHHH--HhHHHHHHHHHHHHhhc-ccC
Confidence            367977  99999999999999866 665

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2e-05  Score=38.15  Aligned_cols=23  Identities=35%  Similarity=0.850  Sum_probs=21.8

Q ss_pred             CeecCcccccccccChHHHHHHHHh
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      ||.|..  |+.+|..+.+|..||+.
T Consensus         1 py~C~~--CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTY--CNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSS--SSCEESSHHHHHHHHHS
T ss_pred             Ccccce--eeeeEeeccchhHhhhh
Confidence            799999  99999999999999985

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.3e-05  Score=38.02  Aligned_cols=27  Identities=33%  Similarity=0.695  Sum_probs=24.5

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      +||+|.+  |..-..+.++|..|++..|.
T Consensus         1 rPFkC~~--CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNY--CSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSS--SSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccce--ecccccCcchHHHHHHHHcc
Confidence            6999999  99999999999999998764

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.49  E-value=3.7e-05  Score=37.84  Aligned_cols=30  Identities=33%  Similarity=0.861  Sum_probs=28.0

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      |.|.|.|+.|+..|...-.|..|+-.|||+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            679999999999999999999999999874

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.2e-05  Score=37.39  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhh
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      ||.|.  .|..+|.++.+|..||+.-
T Consensus         1 py~C~--~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCT--YCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECS--SSSCEESSHHHHHHHHHSS
T ss_pred             Ccccc--eeeeeEeeccchhHhhhhh
Confidence            79996  5999999999999999854

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.5e-05  Score=36.34  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=24.1

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhc
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |||+|.  .|..+-...+.|+.|+|+|.
T Consensus         2 kp~kck--~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCK--TCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECS--SSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccc--cccchhcchhhHhhhhhccc
Confidence            799996  69999999999999999995

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.44  E-value=3.2e-05  Score=35.87  Aligned_cols=23  Identities=26%  Similarity=0.740  Sum_probs=21.1

Q ss_pred             eecCcccccccccChHHHHHHHHhh
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      |+|..  |.++|..++.|.+|+++|
T Consensus         1 ykcgl--cersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGL--CERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSS--SCCBCSSHHHHHHHGGGT
T ss_pred             Ccccc--hHHHHHHHHHHHHHHHhh
Confidence            78988  999999999999999874

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.41  E-value=6.9e-05  Score=35.42  Aligned_cols=26  Identities=35%  Similarity=0.760  Sum_probs=24.6

Q ss_pred             eecCCCCCCccccChhhHHHHHHhhc
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |.|.|..|+|+|.....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            88999999999999999999999986

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.31  E-value=9.7e-05  Score=34.91  Aligned_cols=25  Identities=36%  Similarity=0.774  Sum_probs=22.5

Q ss_pred             eecCcccccccccChHHHHHHHHhh
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      |.|.+++|+|+|.....|+.|+-+|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            8899999999999999999998653

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00013  Score=36.58  Aligned_cols=31  Identities=29%  Similarity=0.549  Sum_probs=21.3

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCCCCCc
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSD  104 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~  104 (217)
                      |...|..  |||.|....+|.+|.. .|.+++|.
T Consensus         4 k~~~ce~--cgk~frdvyhlnrhkl-shs~ekpy   34 (35)
T d2epra1           4 KQVACEI--CGKIFRDVYHLNRHKL-SHSGEKPY   34 (35)
T ss_dssp             CSEEETT--TTEEESSHHHHHHHGG-GSCSCCCC
T ss_pred             hhhhHHH--HHHHHHHHHHHHhhhc-ccCCCCCC
Confidence            4566776  8888877777777754 47766653

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00018  Score=34.64  Aligned_cols=26  Identities=27%  Similarity=0.467  Sum_probs=23.2

Q ss_pred             eecCcccccccccChHHHHHHHHhhCCCC
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      |.|+.  ||......+.|++|+|+ |++.
T Consensus         2 YvC~~--Cg~~C~KPSvL~KHIRs-HT~~   27 (28)
T d1bboa1           2 YICEE--CGIRAKKPSMLKKHIRT-HTDV   27 (28)
T ss_dssp             CBCTT--TCCBCSSHHHHHHHHHH-TSSC
T ss_pred             ccccc--cCcccCCHHHHHHHHHH-hcCC
Confidence            88998  99999999999999998 6553

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=9.4e-06  Score=41.73  Aligned_cols=28  Identities=32%  Similarity=0.987  Sum_probs=18.6

Q ss_pred             CeecCccccc---ccccChHHHHHHHHhhCCC
Q 027872           72 PYACPYEGCE---KAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        72 p~~C~~~~C~---k~F~~~~~L~~H~~~~h~~  100 (217)
                      -|.|.+.+|.   +.|.....|..|||+ |+|
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~-HTg   32 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRR-HTG   32 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHH-HHC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhh-cCC
Confidence            4666666664   457777788888876 444

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00019  Score=33.17  Aligned_cols=23  Identities=26%  Similarity=0.857  Sum_probs=21.0

Q ss_pred             CeecCcccccccccChHHHHHHHHh
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      ||+|..  |...|.++..|+.||-.
T Consensus         2 pykcss--csqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSS--CSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSS--SCCEESSHHHHHHHHHH
T ss_pred             CCcccH--HHHHHHHHHHHHHHHHh
Confidence            899987  99999999999999854

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.13  E-value=0.00014  Score=33.60  Aligned_cols=24  Identities=21%  Similarity=0.456  Sum_probs=21.6

Q ss_pred             eecCCCCCCccccChhhHHHHHHhhc
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |+|  ..|.++|.-++.|.+|+|+|.
T Consensus         1 ykc--glcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKC--GLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBC--SSSCCBCSSHHHHHHHGGGTC
T ss_pred             Ccc--cchHHHHHHHHHHHHHHHhhc
Confidence            789  479999999999999999983

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00022  Score=34.32  Aligned_cols=25  Identities=28%  Similarity=0.692  Sum_probs=22.2

Q ss_pred             ecCcccccccccChHHHHHHHHhhC
Q 027872           74 ACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        74 ~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      .|.++||||.|+.+..|.-|.+..|
T Consensus         2 ~cdf~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGG
T ss_pred             CCCCCCchhhhccHHHHHhHHHHHH
Confidence            5888899999999999999998755

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.03  E-value=0.00029  Score=37.08  Aligned_cols=30  Identities=17%  Similarity=0.407  Sum_probs=26.0

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCCC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEKN   38 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~k   38 (217)
                      .+.|.|.  .|+|.|.+...|=-|++.|..++
T Consensus         3 ~r~~~C~--~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCS--FCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECT--TTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCC--CCCCccCCcccccchHhhhcchH
Confidence            4679995  69999999999999999996543

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00033  Score=33.82  Aligned_cols=27  Identities=22%  Similarity=0.460  Sum_probs=23.2

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      |||+|.|  |...-.+.++|..|++.-++
T Consensus         1 rPFkC~~--CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNY--CSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSS--SSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccce--ecccccCcchHHHHHHHHcc
Confidence            7999965  99999999999999886543

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.99  E-value=0.00036  Score=32.34  Aligned_cols=24  Identities=33%  Similarity=0.847  Sum_probs=22.3

Q ss_pred             eecCcccccccccChHHHHHHHHhhC
Q 027872           73 YACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        73 ~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      |.|++  |-|-|+++.++..|.++.|
T Consensus         2 ypcp~--cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPF--CFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTT--TCCEESCHHHHHHHHHHHT
T ss_pred             cCCch--hhHHhccccCceEEEEEec
Confidence            78999  9999999999999999866

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.99  E-value=0.00017  Score=35.68  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             ceecCCCCCCccccChhhHHHHHH-hhc
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIA-SHH   35 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~-~H~   35 (217)
                      ||.|  .+|++.|.++.-|.+|.+ .|.
T Consensus         1 Pf~C--~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPC--GLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEEC--TTTCCEESSHHHHHHHHTTTSC
T ss_pred             Cccc--ccccchhhHHHHHHHHHHHHhc
Confidence            8999  589999999999999965 443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00036  Score=32.72  Aligned_cols=25  Identities=40%  Similarity=1.026  Sum_probs=21.5

Q ss_pred             ecCcccccccccChHHHHHHHHhhCCCC
Q 027872           74 ACPYEGCEKAYIHEYKLKLHLKREHPGH  101 (217)
Q Consensus        74 ~C~~~~C~k~F~~~~~L~~H~~~~h~~~  101 (217)
                      .|+.  |.|+|..+..|+.|-|. |+|+
T Consensus         2 qcp~--c~k~f~skyylkvhnr~-htge   26 (27)
T d2dlqa4           2 ECPT--CHKKFLSKYYLKVHNRK-HTGE   26 (27)
T ss_dssp             CCTT--TCCCCSSHHHHHHHHHH-HSSC
T ss_pred             cCcc--hHHHHHHhHhhhhcccc-ccCC
Confidence            5888  99999999999999987 5554

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.82  E-value=0.00054  Score=36.00  Aligned_cols=25  Identities=24%  Similarity=0.704  Sum_probs=23.1

Q ss_pred             CCeecCcccccccccChHHHHHHHHhh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      +.|+|.+  |++.|.....|--||+.|
T Consensus         4 r~~~C~~--C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           4 RSYTCSF--CKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SSEECTT--TCCEESSHHHHHHHHHTT
T ss_pred             CccCCCC--CCCccCCcccccchHhhh
Confidence            6799999  999999999999999874

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00046  Score=32.94  Aligned_cols=24  Identities=33%  Similarity=0.790  Sum_probs=21.3

Q ss_pred             ecCcccccccccChHHHHHHHHhh
Q 027872           74 ACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        74 ~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      .|+..||+|.|...+.+++|+.+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            577789999999999999999773

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.0007  Score=32.50  Aligned_cols=28  Identities=29%  Similarity=0.831  Sum_probs=24.2

Q ss_pred             CCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           70 ERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        70 ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      +.-|.|..  |...|.++-.|+.||.. |+|
T Consensus         2 eqvftcs~--cqe~f~rrmelr~hmvs-htg   29 (30)
T d2dlqa3           2 EQVFTCSV--CQETFRRRMELRLHMVS-HTG   29 (30)
T ss_dssp             CCCEECSS--SCCEESSHHHHHHHHHH-HSS
T ss_pred             cceEEeHH--HHHHHHHHHhheeeeec-ccC
Confidence            46799998  99999999999999976 554

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.0014  Score=31.38  Aligned_cols=29  Identities=24%  Similarity=0.576  Sum_probs=25.5

Q ss_pred             CCceecCCCCCCccccChhhHHHHHHhhcCC
Q 027872            7 ENYHICPYPDCGKRYAHEYKLKNHIASHHEK   37 (217)
Q Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~~~H~~~   37 (217)
                      +.-|.|  ..|...|.+.-.|+.|+..|+|+
T Consensus         2 eqvftc--s~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTC--SVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEEC--SSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEe--HHHHHHHHHHHhheeeeecccCC
Confidence            456899  47999999999999999999864

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0014  Score=31.38  Aligned_cols=23  Identities=26%  Similarity=0.739  Sum_probs=20.5

Q ss_pred             ecCCCCCCccccChhhHHHHHHh
Q 027872           11 ICPYPDCGKRYAHEYKLKNHIAS   33 (217)
Q Consensus        11 ~C~~~~C~k~F~~~~~L~~H~~~   33 (217)
                      .|.|+.|||.|+....|.-|++-
T Consensus         2 ~cdf~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCCchhhhccHHHHHhHHHH
Confidence            58889999999999999998764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0024  Score=30.20  Aligned_cols=26  Identities=27%  Similarity=0.796  Sum_probs=23.3

Q ss_pred             CeecCcccccccccChHHHHHHHHhhCC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      .|.|+.  |+-...+++.|+.|++..|.
T Consensus         2 k~qcph--c~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           2 KFHCPH--CDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             SEECSS--SSCEESSHHHHHHHHHHTSC
T ss_pred             CccCCc--chhheeehhhhhHHhhhccc
Confidence            389999  99999999999999998664

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.002  Score=30.36  Aligned_cols=23  Identities=39%  Similarity=0.860  Sum_probs=20.6

Q ss_pred             CeecCcccccccccChHHHHHHHHh
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      ||+|..  |||.|-++.+|..|...
T Consensus         1 pf~c~k--cgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPK--CGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTT--TCCBCSSHHHHHHHHHH
T ss_pred             CCcccc--chhhhhhHhHHHHHHHH
Confidence            799988  99999999999999754

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.00  E-value=0.0043  Score=29.77  Aligned_cols=29  Identities=24%  Similarity=0.687  Sum_probs=24.9

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      |.|.|...+|..+|+.+.+++.|..+.|.
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhcc
Confidence            46889878899999999999999877663

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0034  Score=29.75  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhc
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      |-+|  +.|.++...+..|+.|.|+|-
T Consensus         2 pekc--~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKC--SECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEEC--SSSSCEESSHHHHHHHHGGGC
T ss_pred             CccC--cccccccCcHHHHHHhhcccc
Confidence            6689  699999999999999999994

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.88  E-value=0.0033  Score=28.96  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             eecCCCCCCccccChhhHHHHHHhh
Q 027872           10 HICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus        10 ~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      |.|  |.|-|.|.++.++..|.++-
T Consensus         2 ypc--p~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPC--PFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EEC--TTTCCEESCHHHHHHHHHHH
T ss_pred             cCC--chhhHHhccccCceEEEEEe
Confidence            889  56999999999999998754

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.0037  Score=28.68  Aligned_cols=22  Identities=18%  Similarity=0.594  Sum_probs=20.0

Q ss_pred             ceecCCCCCCccccChhhHHHHHH
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIA   32 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~   32 (217)
                      ||+|  ..|...|.++..|..|+.
T Consensus         2 pykc--sscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKC--SSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEEC--SSSCCEESSHHHHHHHHH
T ss_pred             CCcc--cHHHHHHHHHHHHHHHHH
Confidence            8999  579999999999999965

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0033  Score=31.64  Aligned_cols=23  Identities=17%  Similarity=0.577  Sum_probs=20.6

Q ss_pred             CeecCcccccccccChHHHHHHHHh
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      .|.|..  |+|+|+++..+.+|...
T Consensus         4 afvcsk--cgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSK--CGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSS--SCCEESCHHHHHHHHHH
T ss_pred             eeeecc--cccchhcchHHHHHhhh
Confidence            589988  99999999999999765

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0034  Score=29.54  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=20.4

Q ss_pred             ceecCCCCCCccccChhhHHHHHHh
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIAS   33 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~   33 (217)
                      ||.|  ..|||.|-++.+|..|...
T Consensus         1 pf~c--~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFEC--PKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBC--TTTCCBCSSHHHHHHHHHH
T ss_pred             CCcc--ccchhhhhhHhHHHHHHHH
Confidence            7999  6899999999999999654

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0079  Score=28.50  Aligned_cols=24  Identities=25%  Similarity=0.733  Sum_probs=21.3

Q ss_pred             ecCCCCCCccccChhhHHHHHHhh
Q 027872           11 ICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus        11 ~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      .|+...|+|.|...+.++.|+-+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            476678999999999999999888

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.015  Score=32.35  Aligned_cols=37  Identities=30%  Similarity=0.557  Sum_probs=32.1

Q ss_pred             CCCCeecCcccccccccChHHHHHHHHhhCCCCCCcc
Q 027872           69 SERPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDE  105 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~~~~~~  105 (217)
                      --+||.|-..||-.+|+-..+|..|.+..|....+..
T Consensus        17 pyrpyrcvhqgc~aaftiq~nlilhy~avh~s~lp~~   53 (61)
T d1x3ca1          17 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAF   53 (61)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCC
T ss_pred             CCCceeeeccchhhhhhhhhhHHHHHHHHhhhcCchh
Confidence            4589999888999999999999999998888776543

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.82  E-value=0.0085  Score=29.15  Aligned_cols=29  Identities=38%  Similarity=0.944  Sum_probs=25.2

Q ss_pred             CCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      |.|.|.++.|+-.|+..-.|..|+-. |+|
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLck-HTG   30 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSK-HTG   30 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHH-HHC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhh-hcC
Confidence            57899988999999999999999876 554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.013  Score=27.51  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=21.2

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhh
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      .|+|  |+|+-...+++.|+.|++.-
T Consensus         2 k~qc--phc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHC--PHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEEC--SSSSCEESSHHHHHHHHHHT
T ss_pred             CccC--CcchhheeehhhhhHHhhhc
Confidence            4899  68999999999999998854

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.012  Score=32.04  Aligned_cols=25  Identities=32%  Similarity=0.628  Sum_probs=22.3

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhh
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      -.|.|  ..|||.|.....|+.|...|
T Consensus         5 ~l~pC--G~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPC--GLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCC--TTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeec--cccccccCCHHHHhHhHHhc
Confidence            35789  58999999999999999988

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.014  Score=31.82  Aligned_cols=26  Identities=23%  Similarity=0.492  Sum_probs=22.2

Q ss_pred             CeecCcccccccccChHHHHHHHHhhCCC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      -|.|..  |+|.|.....|++|... |+.
T Consensus         6 l~pCG~--CgK~Ftd~~rLr~HEAQ-HG~   31 (53)
T d2eppa1           6 ILPCGL--CGKVFTDANRLRQHEAQ-HGV   31 (53)
T ss_dssp             CCCCTT--TCCCCSCHHHHHHHHHH-HTT
T ss_pred             eeeccc--cccccCCHHHHhHhHHh-cCc
Confidence            478999  99999999999999865 444

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.023  Score=28.48  Aligned_cols=26  Identities=19%  Similarity=0.581  Sum_probs=22.3

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhcC
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHHE   36 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~~   36 (217)
                      .|.|  ..|||.|.+...+.+|.-..+|
T Consensus         4 afvc--skcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVC--SKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEEC--SSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeee--cccccchhcchHHHHHhhhcCC
Confidence            4899  5899999999999999877654

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.68  E-value=0.035  Score=27.85  Aligned_cols=30  Identities=27%  Similarity=0.570  Sum_probs=25.9

Q ss_pred             CCCCeecCcccccccccChHHHHHHHHhhCCC
Q 027872           69 SERPYACPYEGCEKAYIHEYKLKLHLKREHPG  100 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~~  100 (217)
                      |+--|.|.+  |.+.++.-+++.+|..+.|..
T Consensus         5 g~~~yRC~~--C~r~YTHISNFCRHyvtSHk~   34 (37)
T d2drpa1           5 GEHTYRCKV--CSRVYTHISNFCRHYVTSHKR   34 (37)
T ss_dssp             ETTEEECTT--TCCEESSHHHHHHHHHHHSSS
T ss_pred             cCcEEEeeh--hhHHHHHHHHHHHHHHhhccc
Confidence            456799999  999999999999999886654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.12  E-value=0.046  Score=29.60  Aligned_cols=29  Identities=34%  Similarity=0.616  Sum_probs=25.7

Q ss_pred             CCCCeecCcccccccccChHHHHHHHHhhCC
Q 027872           69 SERPYACPYEGCEKAYIHEYKLKLHLKREHP   99 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~~~~L~~H~~~~h~   99 (217)
                      .+.|-.|++  |+....++.+|++|+..-|-
T Consensus        21 s~qpatcpi--c~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          21 SEQPATCPI--CYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TSCCEECTT--TCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCCCCch--HHHHHHHHHHHHHHHHHHhh
Confidence            578999999  99999999999999987553

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.057  Score=25.36  Aligned_cols=24  Identities=21%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             CeecCcccccccccChHHHHHHHHhh
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKRE   97 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~   97 (217)
                      |-+|+.  |..+...+..|+.|.|+|
T Consensus         2 pekc~e--csyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSE--CSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSS--SSCEESSHHHHHHHHGGG
T ss_pred             CccCcc--cccccCcHHHHHHhhccc
Confidence            678987  999999999999999884

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.23  E-value=0.089  Score=28.43  Aligned_cols=28  Identities=25%  Similarity=0.475  Sum_probs=24.0

Q ss_pred             CCCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            6 QENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      .+.|..|  |+|+....++.+|++|+-.-+
T Consensus        21 s~qpatc--pic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          21 SEQPATC--PICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TSCCEEC--TTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCCCC--chHHHHHHHHHHHHHHHHHHh
Confidence            3678999  689999999999999977554

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.86  E-value=0.19  Score=23.83  Aligned_cols=26  Identities=19%  Similarity=0.510  Sum_probs=22.5

Q ss_pred             CceecCCCCCCccccChhhHHHHHHh
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIAS   33 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~   33 (217)
                      |.|+|..+.|.-+|.++.+++.|...
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHH
T ss_pred             CCccccCCCcceEEeehHHHHHHHhh
Confidence            45889888999999999999999654

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.1  Score=28.89  Aligned_cols=29  Identities=14%  Similarity=0.115  Sum_probs=25.1

Q ss_pred             CCCceecCCCCCCccccChhhHHHHHHhh
Q 027872            6 QENYHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      .=|||.|-...|..+|+-..+|..|-+.-
T Consensus        17 pyrpyrcvhqgc~aaftiq~nlilhy~av   45 (61)
T d1x3ca1          17 PYRPYRCVHQGCFAAFTIQQNLILHYQAV   45 (61)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHH
T ss_pred             CCCceeeeccchhhhhhhhhhHHHHHHHH
Confidence            35899998889999999999999997743

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.16  Score=24.07  Aligned_cols=25  Identities=28%  Similarity=0.628  Sum_probs=21.0

Q ss_pred             ceecCCCCCCccccChhhHHHHHHhhc
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      -|.|  .+|||...+...++.|+...+
T Consensus         2 ~ftc--~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           2 MFTC--HHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCC--SSSCCCCSSHHHHHHHHHHHT
T ss_pred             ceec--hhHHHHHhhccCceEEEeecc
Confidence            3789  589999999999999977553

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.15  Score=25.08  Aligned_cols=24  Identities=25%  Similarity=0.625  Sum_probs=21.2

Q ss_pred             ecCCCCCCccccChhhHHHHHHhh
Q 027872           11 ICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus        11 ~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      .|.|..|++.|.+...|..|+..-
T Consensus         3 nChW~~C~~eFdtQd~LV~Hinnd   26 (32)
T d2glia1           3 DCRWDGCSQEFDSQEQLVHHINSE   26 (32)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHH
T ss_pred             cccccccccccCCHHHHHHHcccc
Confidence            488899999999999999998754

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.91  E-value=0.4  Score=23.46  Aligned_cols=25  Identities=28%  Similarity=0.772  Sum_probs=21.2

Q ss_pred             ecCcccccccccChHHHHHHHHhhC
Q 027872           74 ACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        74 ~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      .|.+.+|++-|.....|..|+..-|
T Consensus         3 nChW~~C~~eFdtQd~LV~HinndH   27 (32)
T d2glia1           3 DCRWDGCSQEFDSQEQLVHHINSEH   27 (32)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHT
T ss_pred             cccccccccccCCHHHHHHHccccc
Confidence            4777789999999999999997644

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.40  E-value=0.1  Score=30.92  Aligned_cols=26  Identities=23%  Similarity=0.482  Sum_probs=22.1

Q ss_pred             CCCCeecCcccccccccChHHHHHHHHh
Q 027872           69 SERPYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        69 ~ekp~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      |.-.|-|..  |+|.|.....|..|+++
T Consensus        12 G~gqfYCv~--C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLA--CARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETT--TTEECSSHHHHHHHTTC
T ss_pred             CCCEEeccc--ccCccCCHHHHHHHHcc
Confidence            334588998  99999999999999874

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.02  E-value=0.26  Score=24.21  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=19.1

Q ss_pred             ceecCCCCCCccccChhhHHHHHH
Q 027872            9 YHICPYPDCGKRYAHEYKLKNHIA   32 (217)
Q Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~~   32 (217)
                      .|.|  +-||-+|++.+.|..|+.
T Consensus         8 rf~c--~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMC--LPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBC--TTTCCBCSCHHHHHHHTT
T ss_pred             ceec--cccceeecChhHHHhhhh
Confidence            4889  589999999999999854

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.32  E-value=0.26  Score=24.19  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=20.6

Q ss_pred             CCeecCcccccccccChHHHHHHHHh
Q 027872           71 RPYACPYEGCEKAYIHEYKLKLHLKR   96 (217)
Q Consensus        71 kp~~C~~~~C~k~F~~~~~L~~H~~~   96 (217)
                      ..|.|.-  ||-+|+..+.|..|+..
T Consensus         7 arf~c~p--cgirfss~stleahqty   30 (36)
T d1y0jb1           7 ARFMCLP--CGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCCBCTT--TCCBCSCHHHHHHHTTT
T ss_pred             cceeccc--cceeecChhHHHhhhhe
Confidence            4588987  99999999999999753

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.17  E-value=0.55  Score=23.29  Aligned_cols=29  Identities=24%  Similarity=0.471  Sum_probs=24.3

Q ss_pred             CCCCceecCCCCCCccccChhhHHHHHHhhc
Q 027872            5 SQENYHICPYPDCGKRYAHEYKLKNHIASHH   35 (217)
Q Consensus         5 tgekp~~C~~~~C~k~F~~~~~L~~H~~~H~   35 (217)
                      .|+..|.|  ..|.+.+...+++-+|..+-+
T Consensus         4 Eg~~~yRC--~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           4 EGEHTYRC--KVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EETTEEEC--TTTCCEESSHHHHHHHHHHHS
T ss_pred             ccCcEEEe--ehhhHHHHHHHHHHHHHHhhc
Confidence            45678999  589999999999999977553

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.41  E-value=0.76  Score=21.63  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             CeecCcccccccccChHHHHHHHHhhC
Q 027872           72 PYACPYEGCEKAYIHEYKLKLHLKREH   98 (217)
Q Consensus        72 p~~C~~~~C~k~F~~~~~L~~H~~~~h   98 (217)
                      .|.|..  |||.......++-|+-.-|
T Consensus         2 ~ftc~h--cgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           2 MFTCHH--CGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCCSS--SCCCCSSHHHHHHHHHHHT
T ss_pred             ceechh--HHHHHhhccCceEEEeecc
Confidence            478998  9999999999999986544

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.95  E-value=0.21  Score=29.47  Aligned_cols=25  Identities=28%  Similarity=0.620  Sum_probs=21.0

Q ss_pred             CceecCCCCCCccccChhhHHHHHHhh
Q 027872            8 NYHICPYPDCGKRYAHEYKLKNHIASH   34 (217)
Q Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~~~H   34 (217)
                      -.|-|  ..|+|.|.+...|..|+++-
T Consensus        14 gqfYC--v~C~K~F~se~~l~~H~ksK   38 (67)
T d1zr9a1          14 GLHRC--LACARYFIDSTNLKTHFRSK   38 (67)
T ss_dssp             GCSEE--TTTTEECSSHHHHHHHTTCH
T ss_pred             CEEec--ccccCccCCHHHHHHHHccc
Confidence            35889  57999999999999997743