Query 027873
Match_columns 217
No_of_seqs 120 out of 258
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05241 EBP: Emopamil binding 100.0 2.9E-64 6.2E-69 428.5 16.3 188 26-213 2-194 (194)
2 KOG4826 C-8,7 sterol isomerase 100.0 2.2E-61 4.7E-66 410.8 12.3 208 2-211 5-216 (229)
3 PF10914 DUF2781: Protein of u 96.7 0.0013 2.8E-08 53.8 2.9 145 55-203 1-149 (150)
4 PF04238 DUF420: Protein of un 50.7 1.1E+02 0.0024 24.7 7.8 98 23-143 5-108 (133)
5 PF14770 TMEM18: Transmembrane 36.6 2.2E+02 0.0048 22.8 7.4 90 16-133 8-97 (123)
6 PF14102 Caps_synth_CapC: Caps 29.8 37 0.00079 27.0 1.8 53 5-59 16-68 (121)
7 PF01102 Glycophorin_A: Glycop 25.9 82 0.0018 25.3 3.2 22 25-46 70-91 (122)
8 PF12273 RCR: Chitin synthesis 25.4 55 0.0012 25.8 2.1 22 26-47 5-26 (130)
9 PRK11877 psaI photosystem I re 24.4 78 0.0017 20.5 2.3 25 181-205 5-29 (38)
10 PF07444 Ycf66_N: Ycf66 protei 23.1 1.7E+02 0.0038 22.0 4.3 51 19-74 4-55 (84)
11 TIGR01528 NMN_trans_PnuC nicot 22.1 85 0.0018 26.5 2.8 38 121-158 6-51 (189)
12 PF03790 KNOX1: KNOX1 domain ; 20.9 24 0.00052 23.7 -0.6 8 1-8 8-15 (45)
No 1
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=2.9e-64 Score=428.54 Aligned_cols=188 Identities=39% Similarity=0.744 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHHHHHhHhhheEeceeeeecccccCCCCchhHHHHHhhhcCCccc
Q 027873 26 HAWNGIATFLVMLVIWLVSGRSSRKLSKTDRWLMIWWAVSGLIHIIHEGYWVFSPEFYKDESGNYFAEVWKEYSKGDSRY 105 (217)
Q Consensus 26 l~~~~~~~~~v~~~~~~~s~~~~~~l~~~dr~~~~Wf~~~g~iH~~~EG~Fv~~~~~~~~~~~~~~a~LWkeYa~~DsRY 105 (217)
++.+++++++++++++.+++|.+|++++.||++++||++||+||+++||+|++++.++++.++++++|+||||||+|+||
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~W~~~~~~iH~~~eG~f~~~~~~~~~~~~~~~~~lWkeYa~~D~RY 81 (194)
T PF05241_consen 2 LAIFLAGCAAVLLIAYLLSRRLPPSLSKGDRFVFLWFALDGLIHFFLEGYFVYFRPFSPGTSQSLLAQLWKEYAKADSRY 81 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhHHheEeeehheechhccccccchHHHHHHHHccCCccc
Confidence 56777889999999999999998999999999999999999999999999999999998844449999999999999999
Q ss_pred ccCCCcEEEeehhhhhhhhhHHHHHHHHHHhCCCchhHHHHHHHHHHhhcceeeeehhhhcC----CCCC-CCchhhhhh
Q 027873 106 ASRHAAVLGIEGIAVLFVGPASLLAVYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEG----DKFA-STRYFYYSY 180 (217)
Q Consensus 106 ~~~D~~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qlYG~~lyf~te~~~G----~~~~-~~~~yfW~y 180 (217)
+++|++++|+|++|+++|||+|+++++++.++|++||++|+++|++|+|||+|||+||+++| .+++ +|++|||+|
T Consensus 82 ~~~D~~vv~~e~~t~l~~Gpl~l~~~~~i~~~~~~r~~l~i~vs~~qlygtvlyf~~e~~~g~~~~~~~~~~~~ly~W~y 161 (194)
T PF05241_consen 82 LTSDPFVVCMESITVLLEGPLCLLAAYLIAKRSPYRHFLQIVVSVMQLYGTVLYFATEWLEGFVHSPNFSTPEPLYFWFY 161 (194)
T ss_pred ccCCCcEEeehhHHHHHHhHHHHHHHHHHHhCchHHHHHHHHHHHHhhheeeEEEEEHhhccCcCCccCCCCChhhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999 4566 899999999
Q ss_pred hheeCcchhhhhHHHHHHHHHHHHHHhcCCccc
Q 027873 181 FIAQGGTWLLFPALIIIRCWKRICAACTLPDHK 213 (217)
Q Consensus 181 fv~~N~~WivvP~~~l~~s~~~i~~a~~~~~~k 213 (217)
||++|++||++|++++++|++++++|++.+++|
T Consensus 162 ~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~~~ 194 (194)
T PF05241_consen 162 FVFPNGIWIVVPLLLLYQSWKEIARAFRAAQKK 194 (194)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999998877
No 2
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-61 Score=410.84 Aligned_cols=208 Identities=41% Similarity=0.791 Sum_probs=196.1
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHHHHHhHhhheEeceeeeecc
Q 027873 2 SHPYSPSDLILPDFTPNLRSTSEVHAWNGIATFLVMLVIWLVSGRSSRKLSKTDRWLMIWWAVSGLIHIIHEGYWVFSPE 81 (217)
Q Consensus 2 ~hpy~P~~~~ip~y~~n~~s~~~il~~~~~~~~~v~~~~~~~s~~~~~~l~~~dr~~~~Wf~~~g~iH~~~EG~Fv~~~~ 81 (217)
.|||+|+|++||+|+|++++...++++++.++.+++..+|++++|. +-...||+.+||+++||+||++.||||++.+.
T Consensus 5 ~hpy~p~~l~l~~~v~i~~~~~~~~sil~~~~~l~v~~~~lls~~~--~~~~L~~w~l~Wl~vsGlih~v~egyfv~~p~ 82 (229)
T KOG4826|consen 5 LHPYWPQHLRLDNFVPIDRPTWHILSILLSVTLLLVVTTWLLSGRA--AVVVLDKWVLCWLAVSGLIHLVLEGYFVFRPE 82 (229)
T ss_pred cccccHHHcCccccCcccchHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCcchhhHHHHhhCeeeeEEEeeEEeeec
Confidence 4999999999999999999999999999999999999999999985 34678999999999999999999999999998
Q ss_pred cccCC-CCchhHHHHHhhhcCCcccccCCCcEEEeehhhhhhhhhHHHHHHHHHHhCCCchhHHHHHHHHHHhhcceeee
Q 027873 82 FYKDE-SGNYFAEVWKEYSKGDSRYASRHAAVLGIEGIAVLFVGPASLLAVYAIAKGKSYSYILQFALSLVQFYGSSLYF 160 (217)
Q Consensus 82 ~~~~~-~~~~~a~LWkeYa~~DsRY~~~D~~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qlYG~~lyf 160 (217)
+-.++ .+++++|+||||||+|+||...|++++|+|++|+++|||++++++++++++|++|+.+|+.+|++|+||+++||
T Consensus 83 ~~~~~~~s~~L~~~WKeYsk~D~RYv~~d~~vvc~eg~t~~l~g~Lsl~aIya~~k~~~~~~lLq~t~sV~~lyg~~lyF 162 (229)
T KOG4826|consen 83 TNLPANSSALLAQLWKEYSKGDSRYVLTDDVVVCVEGITALLEGPLSLLAIYAILKEKRYRLLLQLTVSVCQLYGCVLYF 162 (229)
T ss_pred ccCCccHHHHHHHHHHHhcccceeEeccCCcEEeeeeehhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 76655 45599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhcCCCC--C-CCchhhhhhhheeCcchhhhhHHHHHHHHHHHHHHhcCCc
Q 027873 161 ITAFLEGDKF--A-STRYFYYSYFIAQGGTWLLFPALIIIRCWKRICAACTLPD 211 (217)
Q Consensus 161 ~te~~~G~~~--~-~~~~yfW~yfv~~N~~WivvP~~~l~~s~~~i~~a~~~~~ 211 (217)
.||+.+|+++ . +|++|+|+|++|+|++|+++|.++++++|++++.+.+.++
T Consensus 163 l~~~~~~~~~~~~~~N~~Y~~~yliF~NgvWVliP~Lll~~~W~kL~~~~~~~e 216 (229)
T KOG4826|consen 163 LTEILDGFGHGLFTGNPLYFWFYLIFPNGVWVLIPGLLLFDLWKKLALAQSTLE 216 (229)
T ss_pred HHHhcCCCCCCcCCCCceeeeEeEeecCceeeehhHHHHHHHHHHHhhHHHHhh
Confidence 9999999987 3 9999999999999999999999999999999998875443
No 3
>PF10914 DUF2781: Protein of unknown function (DUF2781); InterPro: IPR016964 This group represents a predicted transmembrane protein 97.
Probab=96.68 E-value=0.0013 Score=53.80 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhHhhheEeceeeeecccccCCCCchhHHHHHhhhc-CCccccc-CCCcEEEeehhhhhhhhhHHHHHHH
Q 027873 55 DRWLMIWWAVSGLIHIIHEGYWVFSPEFYKDESGNYFAEVWKEYSK-GDSRYAS-RHAAVLGIEGIAVLFVGPASLLAVY 132 (217)
Q Consensus 55 dr~~~~Wf~~~g~iH~~~EG~Fv~~~~~~~~~~~~~~a~LWkeYa~-~DsRY~~-~D~~vv~~E~it~~~~GPl~l~~~~ 132 (217)
|.+.+.||+....+=+++|..-++-....++ ...++=+-|.. .+-.... .-.+..++-.++.++--|++++.++
T Consensus 1 D~~~~~~f~~hi~itl~iD~~~~~P~~~~p~----~~~~l~~~yi~~~~D~l~~~~p~wf~~f~~~El~~qlP~~~~~~~ 76 (150)
T PF10914_consen 1 DLFYLIYFLIHIPITLLIDSQPVLPPSLFPS----PLQDLRDWYIATYNDPLMADPPPWFKSFVWIELFFQLPFFFYAIY 76 (150)
T ss_pred CeeHHHHHHHHHHHHHHHhCcccCchhhccH----HHHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777767777755543221111 34444444522 2222222 3457777888999999999999999
Q ss_pred HHHhC-CCchhHHHHHHHHHHhhcceeeeehhhhcCCCCC-CCchhhhhhhheeCcchhhhhHHHHHHHHHHH
Q 027873 133 AIAKG-KSYSYILQFALSLVQFYGSSLYFITAFLEGDKFA-STRYFYYSYFIAQGGTWLLFPALIIIRCWKRI 203 (217)
Q Consensus 133 ~i~~~-~~~r~~lqivvs~~qlYG~~lyf~te~~~G~~~~-~~~~yfW~yfv~~N~~WivvP~~~l~~s~~~i 203 (217)
+..++ ++.-..+.++-+..-..+++.-.+.-+..|.... +..=-.+-.+...|++++++|.++.+++++++
T Consensus 77 ~l~~~~~~~~~~~~lvYg~~~~~Tt~~cl~~~~~~~~~~~~~~~~~~~~~l~~~Y~Py~liP~~~~~~m~~r~ 149 (150)
T PF10914_consen 77 ALLKGGSPWIRLLLLVYGVHVATTTLPCLGEVLHGGTWPDLSSPQKARWLLLAIYLPYLLIPLLMALDMFRRL 149 (150)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999 6655555554333333333333333333333333 34444666788999999999999999998764
No 4
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=50.74 E-value=1.1e+02 Score=24.68 Aligned_cols=98 Identities=13% Similarity=0.225 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHHHHHhHhhheEeceeeeecccccCCCCchhHHHHHhhhcCC
Q 027873 23 SEVHAWNGIATFLVMLVIWLVSGRSSRKLSKTDRWLMIWWAVSGLIHIIHEGYWVFSPEFYKDESGNYFAEVWKEYSKGD 102 (217)
Q Consensus 23 ~~il~~~~~~~~~v~~~~~~~s~~~~~~l~~~dr~~~~Wf~~~g~iH~~~EG~Fv~~~~~~~~~~~~~~a~LWkeYa~~D 102 (217)
+.+-+..-+.+..++...|...||.+. ..-.|....=+.++++- +...+.+.+..++
T Consensus 5 p~l~a~~~~~s~~ll~~g~~~Ir~~~~--~~Hr~~Ml~a~~ls~lF---------------------lv~Yl~~~~~~g~ 61 (133)
T PF04238_consen 5 PDLNAVLNAISAVLLLIGWYFIRRGRI--KLHRKLMLTAFVLSALF---------------------LVSYLYYHFLGGS 61 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHhcCC
Confidence 344445555666677778888776432 22233322222222221 1122233333344
Q ss_pred cccccCCC------cEEEeehhhhhhhhhHHHHHHHHHHhCCCchhH
Q 027873 103 SRYASRHA------AVLGIEGIAVLFVGPASLLAVYAIAKGKSYSYI 143 (217)
Q Consensus 103 sRY~~~D~------~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~ 143 (217)
.+|..+|. ++...-.+-+.+..|+.+.+.+.-.+++..||.
T Consensus 62 ~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~~~~~Hr 108 (133)
T PF04238_consen 62 TPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRGRFTRHR 108 (133)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 44444332 333444556667899999999999999887773
No 5
>PF14770 TMEM18: Transmembrane protein 18
Probab=36.58 E-value=2.2e+02 Score=22.77 Aligned_cols=90 Identities=20% Similarity=0.369 Sum_probs=50.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHHHHHhHhhheEeceeeeecccccCCCCchhHHHH
Q 027873 16 TPNLRSTSEVHAWNGIATFLVMLVIWLVSGRSSRKLSKTDRWLMIWWAVSGLIHIIHEGYWVFSPEFYKDESGNYFAEVW 95 (217)
Q Consensus 16 ~~n~~s~~~il~~~~~~~~~v~~~~~~~s~~~~~~l~~~dr~~~~Wf~~~g~iH~~~EG~Fv~~~~~~~~~~~~~~a~LW 95 (217)
.+-+.+-|-+.++.+.= ++..++.+.+||. . ++-++-|+..+.. +|..+.+++ +.++=|
T Consensus 8 ~aVdW~EPwl~~L~~fH--~~~~~~~~~tr~~-~------~~q~~lf~~ll~~--------v~~aE~iN~----~~a~nW 66 (123)
T PF14770_consen 8 HAVDWTEPWLIGLIAFH--VLLLLLAILTRRR-Y------NFQMILFLILLLL--------VYCAEYINE----YAARNW 66 (123)
T ss_pred HhCCCchHHHHHHHHHH--HHHHHHHHHHhcc-c------cHHHHHHHHHHHH--------HHHHHHHHH----HHHHHH
Confidence 34466667777765533 4445555555553 2 2244445554443 444443333 778889
Q ss_pred HhhhcCCcccccCCCcEEEeehhhhhhhhhHHHHHHHH
Q 027873 96 KEYSKGDSRYASRHAAVLGIEGIAVLFVGPASLLAVYA 133 (217)
Q Consensus 96 keYa~~DsRY~~~D~~vv~~E~it~~~~GPl~l~~~~~ 133 (217)
|.+++- -|=+++-. .++++.-||+-+.+...
T Consensus 67 ~~Fs~q--nYFDs~G~-----Fisvv~s~PlLl~~~ii 97 (123)
T PF14770_consen 67 RSFSKQ--NYFDSSGV-----FISVVFSAPLLLNCLII 97 (123)
T ss_pred HHHhhc--cCcCCCCe-----eehHHHHHhHHHHHHHH
Confidence 999876 56543333 44678889995544443
No 6
>PF14102 Caps_synth_CapC: Capsule biosynthesis CapC
Probab=29.85 E-value=37 Score=27.00 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcccCCCCChhhHHHH
Q 027873 5 YSPSDLILPDFTPNLRSTSEVHAWNGIATFLVMLVIWLVSGRSSRKLSKTDRWLM 59 (217)
Q Consensus 5 y~P~~~~ip~y~~n~~s~~~il~~~~~~~~~v~~~~~~~s~~~~~~l~~~dr~~~ 59 (217)
+.|-++..|+|.+-.+..+.-+......+.+.......++++.. +--++|+++
T Consensus 16 ~~~gGlivPgylAl~~~~P~~l~~~~~~s~lt~~i~~~l~~~~i--lyGRrrf~~ 68 (121)
T PF14102_consen 16 WSPGGLIVPGYLALYLDQPVRLLVTLLISLLTYLIVRLLSRRTI--LYGRRRFAA 68 (121)
T ss_pred CCCCCEeeHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhhh--cccHHHHHH
Confidence 46788899999998876666666666666666666688888752 445666654
No 7
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.89 E-value=82 Score=25.30 Aligned_cols=22 Identities=5% Similarity=0.082 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 027873 25 VHAWNGIATFLVMLVIWLVSGR 46 (217)
Q Consensus 25 il~~~~~~~~~v~~~~~~~s~~ 46 (217)
|++..+++++.++++.|.+.|+
T Consensus 70 i~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555655444
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.44 E-value=55 Score=25.81 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 027873 26 HAWNGIATFLVMLVIWLVSGRS 47 (217)
Q Consensus 26 l~~~~~~~~~v~~~~~~~s~~~ 47 (217)
+.++.+..++++++....+||.
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRR 26 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333344444444444443
No 9
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=24.38 E-value=78 Score=20.53 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=16.9
Q ss_pred hheeCcchhhhhHHHHHHHHHHHHH
Q 027873 181 FIAQGGTWLLFPALIIIRCWKRICA 205 (217)
Q Consensus 181 fv~~N~~WivvP~~~l~~s~~~i~~ 205 (217)
|...|.+||+||+.-+.--...++-
T Consensus 5 ~aas~LPsI~VPlVGlvfPai~Mal 29 (38)
T PRK11877 5 FAASWLPWIFVPLVGWVFPAVFMVL 29 (38)
T ss_pred HhHHhCchHHHHHHHHHHHHHHHHH
Confidence 4557899999999766644444433
No 10
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=23.05 E-value=1.7e+02 Score=21.98 Aligned_cols=51 Identities=16% Similarity=-0.017 Sum_probs=31.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-hhhHHHHHHHHHHhHhhheEec
Q 027873 19 LRSTSEVHAWNGIATFLVMLVIWLVSGRSSRKLS-KTDRWLMIWWAVSGLIHIIHEG 74 (217)
Q Consensus 19 ~~s~~~il~~~~~~~~~v~~~~~~~s~~~~~~l~-~~dr~~~~Wf~~~g~iH~~~EG 74 (217)
+.+...++++..+.. ..+....|..+|+++ +.|-+...=-+++|+| +.+.|
T Consensus 4 ~~~~~~iLgi~l~~~----~~~Ly~lr~~~Pev~Rd~D~~fs~vgLl~g~I-L~~~g 55 (84)
T PF07444_consen 4 GFGPSYILGIILILG----GLALYFLRFFRPEVSRDYDIFFSSVGLLYGLI-LWFQG 55 (84)
T ss_pred ccCHHHHHHHHHHHH----HHHHHHHHHHCcchhhhhhHHHHHHHHHHHHH-HHHHh
Confidence 456666776654433 333334577788764 6777666667788877 44444
No 11
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=22.14 E-value=85 Score=26.47 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHhCCCchhHHHHHHHHH--------Hhhccee
Q 027873 121 LFVGPASLLAVYAIAKGKSYSYILQFALSLV--------QFYGSSL 158 (217)
Q Consensus 121 ~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~--------qlYG~~l 158 (217)
++.+-++++++++..|+|....++.++-|+. ++||+.+
T Consensus 6 ~~a~i~g~~~v~l~~k~~~~~w~~Giis~~ly~~i~~~~~lYgd~~ 51 (189)
T TIGR01528 6 LIAGLMGILCVVLASEGKVSNYIFGLISAVIYLYIAYQTGLYAEVL 51 (189)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888889999988887776653 7888754
No 12
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=20.89 E-value=24 Score=23.68 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=5.1
Q ss_pred CCCCCCCC
Q 027873 1 MSHPYSPS 8 (217)
Q Consensus 1 ~~hpy~P~ 8 (217)
|+||.||+
T Consensus 8 ~~HP~Y~~ 15 (45)
T PF03790_consen 8 ASHPLYPR 15 (45)
T ss_pred HcCCCcHH
Confidence 45777764
Done!