Query 027873
Match_columns 217
No_of_seqs 120 out of 258
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:37:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_G FXYD10, phospholemman-l 32.5 42 0.0014 23.8 3.4 32 21-52 17-48 (74)
2 3w1s_C Ubiquitin-like protein 21.8 58 0.002 23.6 2.6 26 73-99 49-75 (91)
3 2klu_A T-cell surface glycopro 21.7 1.5E+02 0.0051 20.7 4.5 22 17-38 2-23 (70)
4 2jp3_A FXYD domain-containing 19.3 48 0.0016 23.1 1.6 27 22-48 16-42 (67)
5 4gdk_A Ubiquitin-like protein 18.1 76 0.0026 22.9 2.6 28 73-102 49-77 (91)
6 1jb0_I Photosystem 1 reaction 17.1 35 0.0012 21.2 0.4 18 182-199 6-23 (38)
7 4dkl_A MU-type opioid receptor 16.8 1.1E+02 0.0039 25.9 3.8 37 176-212 177-213 (464)
8 2jo1_A Phospholemman; FXYD1, N 15.4 68 0.0023 22.6 1.6 28 21-48 14-41 (72)
9 3vw7_A Proteinase-activated re 15.1 2E+02 0.007 24.5 5.1 37 176-212 184-220 (484)
10 1eo6_A GATE-16, golgi-associat 14.7 1E+02 0.0035 23.1 2.6 28 74-102 75-102 (117)
No 1
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=32.54 E-value=42 Score=23.78 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 027873 21 STSEVHAWNGIATFLVMLVIWLVSGRSSRKLS 52 (217)
Q Consensus 21 s~~~il~~~~~~~~~v~~~~~~~s~~~~~~l~ 52 (217)
....|-++.+++++.++.+..++|+|.+-+.+
T Consensus 17 ~tLRigGLifA~vLfi~GI~iilS~kcrCk~~ 48 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIILLAGKCRCKFN 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC------
T ss_pred HHheeccchhHHHHHHHHHHHHHcCccccCCC
Confidence 34567888888888888999999999876543
No 2
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=21.79 E-value=58 Score=23.60 Aligned_cols=26 Identities=12% Similarity=0.456 Sum_probs=20.1
Q ss_pred eceeeeec-ccccCCCCchhHHHHHhhh
Q 027873 73 EGYWVFSP-EFYKDESGNYFAEVWKEYS 99 (217)
Q Consensus 73 EG~Fv~~~-~~~~~~~~~~~a~LWkeYa 99 (217)
|..|+|-. .+.++.+. .+++||++|.
T Consensus 49 ~alFlyVNn~f~Ps~d~-~~~~Ly~~fk 75 (91)
T 3w1s_C 49 DHVYCYINNSFAPSPQQ-NIGELWMQFK 75 (91)
T ss_dssp SCCEEEETTTBCCCTTS-BHHHHHHHHC
T ss_pred ceEEEEECCccCCCccc-HHHHHHHHhC
Confidence 89999854 45565555 8999999997
No 3
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=21.66 E-value=1.5e+02 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHH
Q 027873 17 PNLRSTSEVHAWNGIATFLVML 38 (217)
Q Consensus 17 ~n~~s~~~il~~~~~~~~~v~~ 38 (217)
|-..+.+.++..++++.++++.
T Consensus 2 ~l~~~~p~~LivlGg~~~lll~ 23 (70)
T 2klu_A 2 PLVPRGSMALIVLGGVAGLLLF 23 (70)
T ss_dssp CSSCCCSSHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHH
Confidence 3445566676666666666663
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=19.26 E-value=48 Score=23.09 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccC
Q 027873 22 TSEVHAWNGIATFLVMLVIWLVSGRSS 48 (217)
Q Consensus 22 ~~~il~~~~~~~~~v~~~~~~~s~~~~ 48 (217)
...+-++.+++++.++.++.++|+|.+
T Consensus 16 tLRigGLifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 16 SLQLGGLIFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HheecchhhHHHHHHHHHHHHHcCccc
Confidence 456778888888888899999999764
No 5
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=18.12 E-value=76 Score=22.88 Aligned_cols=28 Identities=11% Similarity=0.363 Sum_probs=19.7
Q ss_pred eceeeeecc-cccCCCCchhHHHHHhhhcCC
Q 027873 73 EGYWVFSPE-FYKDESGNYFAEVWKEYSKGD 102 (217)
Q Consensus 73 EG~Fv~~~~-~~~~~~~~~~a~LWkeYa~~D 102 (217)
|..|+|-.. +.++.+. .+++||++|. .|
T Consensus 49 ~alFlyVnn~~~P~~d~-~~~~Ly~~~k-~D 77 (91)
T 4gdk_A 49 EQLFIYVNQSFAPSPDQ-EVGTLYECFG-SD 77 (91)
T ss_dssp SCCEEEETTTBCCCTTC-BHHHHHHHHC-BT
T ss_pred CeEEEEECCccCCChhh-HHHHHHHHhC-CC
Confidence 567887544 4555444 8999999997 44
No 6
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=17.11 E-value=35 Score=21.25 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=13.2
Q ss_pred heeCcchhhhhHHHHHHH
Q 027873 182 IAQGGTWLLFPALIIIRC 199 (217)
Q Consensus 182 v~~N~~WivvP~~~l~~s 199 (217)
...|.+||+||+.-+.--
T Consensus 6 aa~~LPsI~VPlVglvfP 23 (38)
T 1jb0_I 6 AASFLPWIFIPVVCWLMP 23 (38)
T ss_dssp TTTTHHHHHHHHHHTHHH
T ss_pred hhhhCChhhHhHHHHHHH
Confidence 446889999998766543
No 7
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=16.80 E-value=1.1e+02 Score=25.86 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=27.7
Q ss_pred hhhhhhheeCcchhhhhHHHHHHHHHHHHHHhcCCcc
Q 027873 176 FYYSYFIAQGGTWLLFPALIIIRCWKRICAACTLPDH 212 (217)
Q Consensus 176 yfW~yfv~~N~~WivvP~~~l~~s~~~i~~a~~~~~~ 212 (217)
+...|.++...+..++|+.++.-++..|...+...++
T Consensus 177 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~ 213 (464)
T 4dkl_A 177 WENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRN 213 (464)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556666677899999999999999888765443
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=15.43 E-value=68 Score=22.56 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccC
Q 027873 21 STSEVHAWNGIATFLVMLVIWLVSGRSS 48 (217)
Q Consensus 21 s~~~il~~~~~~~~~v~~~~~~~s~~~~ 48 (217)
....+-++.+++++.++.++.++|++.+
T Consensus 14 ~tLRiGGLifA~vLfi~GI~iilS~Kck 41 (72)
T 2jo1_A 14 QSLQIGGLVIAGILFILGILIVLSRRCR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHcCccc
Confidence 3456778888888888899999999764
No 9
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=15.10 E-value=2e+02 Score=24.51 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=29.2
Q ss_pred hhhhhhheeCcchhhhhHHHHHHHHHHHHHHhcCCcc
Q 027873 176 FYYSYFIAQGGTWLLFPALIIIRCWKRICAACTLPDH 212 (217)
Q Consensus 176 yfW~yfv~~N~~WivvP~~~l~~s~~~i~~a~~~~~~ 212 (217)
++-.|+++...+-.++|+.++.-+|..|...+...++
T Consensus 184 ~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~ 220 (484)
T 3vw7_A 184 YYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSAN 220 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhH
Confidence 4444666667788999999999999999998866553
No 10
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=14.72 E-value=1e+02 Score=23.09 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=20.1
Q ss_pred ceeeeecccccCCCCchhHHHHHhhhcCC
Q 027873 74 GYWVFSPEFYKDESGNYFAEVWKEYSKGD 102 (217)
Q Consensus 74 G~Fv~~~~~~~~~~~~~~a~LWkeYa~~D 102 (217)
..|+|....++..+. .+++|+++|.-.|
T Consensus 75 alfl~vn~~~p~~~~-~m~~LY~~~kd~D 102 (117)
T 1eo6_A 75 AIFLFVDKTVPQSSL-TMGQLYEKEKDED 102 (117)
T ss_dssp CCEEEBTTBCCCTTS-BHHHHHHHHCCTT
T ss_pred cEEEEECCEecCccc-hHHHHHHHhCCCC
Confidence 357776666776655 8999999995434
Done!