Query 027873
Match_columns 217
No_of_seqs 120 out of 258
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 03:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027873.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027873hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 9.0 40 0.0029 19.3 0.4 10 186-195 10-19 (38)
2 d2e9xc2 d.344.1.4 (C:1001-1087 8.6 1.3E+02 0.0095 20.0 3.1 27 1-27 1-27 (87)
3 d1wz3a1 d.15.1.7 (A:10-93) Aut 7.0 1.2E+02 0.0089 20.1 2.3 46 52-99 24-69 (84)
4 d1z3xa2 a.261.1.1 (A:88-235) G 6.8 85 0.0062 22.9 1.5 15 90-106 63-77 (148)
5 d1y6ia2 a.261.1.1 (A:83-233) M 6.6 87 0.0063 22.9 1.5 15 90-106 63-77 (151)
6 d5csma_ a.130.1.2 (A:) Alloste 6.5 1.3E+02 0.0094 23.9 2.6 14 3-16 83-96 (256)
7 d2p7ja1 d.110.6.2 (A:181-273) 5.6 1.8E+02 0.013 18.9 2.7 48 73-120 16-74 (93)
8 d1r44a_ d.65.1.4 (A:) D-Ala-D- 5.3 80 0.0058 24.0 0.5 13 100-112 16-28 (202)
9 d3d32a1 d.15.1.3 (A:1-118) GAB 5.3 1.9E+02 0.014 19.9 2.6 29 74-103 77-105 (118)
10 d2zjda1 d.15.1.3 (A:2-120) Mic 4.4 2.5E+02 0.018 19.1 2.8 29 73-102 76-105 (119)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=8.95 E-value=40 Score=19.31 Aligned_cols=10 Identities=20% Similarity=0.803 Sum_probs=7.9
Q ss_pred cchhhhhHHH
Q 027873 186 GTWLLFPALI 195 (217)
Q Consensus 186 ~~WivvP~~~ 195 (217)
.+||+||...
T Consensus 10 LPwI~iPvv~ 19 (38)
T d1jb0i_ 10 LPWIFIPVVC 19 (38)
T ss_dssp HHHHHHHHHH
T ss_pred cchhHHHHHH
Confidence 5899999753
No 2
>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.57 E-value=1.3e+02 Score=19.99 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHHH
Q 027873 1 MSHPYSPSDLILPDFTPNLRSTSEVHA 27 (217)
Q Consensus 1 ~~hpy~P~~~~ip~y~~n~~s~~~il~ 27 (217)
|++.|+|..--.=+=-.|=.|...||+
T Consensus 1 ~~~~y~~~~~g~~~m~~nYydIDDILa 27 (87)
T d2e9xc2 1 MSEAYFRVESGALGPEENFLSLDDILM 27 (87)
T ss_dssp GGTTCCCCCCCTTSSSCCTTCHHHHHH
T ss_pred CCccccccCCccccccccccCHHHHhh
Confidence 677888865443344456667766654
No 3
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.04 E-value=1.2e+02 Score=20.08 Aligned_cols=46 Identities=9% Similarity=0.312 Sum_probs=27.8
Q ss_pred ChhhHHHHHHHHHHhHhhheEeceeeeecccccCCCCchhHHHHHhhh
Q 027873 52 SKTDRWLMIWWAVSGLIHIIHEGYWVFSPEFYKDESGNYFAEVWKEYS 99 (217)
Q Consensus 52 ~~~dr~~~~Wf~~~g~iH~~~EG~Fv~~~~~~~~~~~~~~a~LWkeYa 99 (217)
+..+++..+=-.+.--++ .|..|+|-....+.+.|.-.+.||+-|+
T Consensus 24 ~~~~~f~~vi~FLrk~Lk--~dsvf~Yin~sFaPspDe~vg~Ly~~f~ 69 (84)
T d1wz3a1 24 SGSDKFANVIDFLRRQLH--SDSLFVYVNSAFSPNPDESVIDLYNNFG 69 (84)
T ss_dssp ETTSBTHHHHHHHHHHHT--CSSCEEEEEEEECCCTTSBHHHHHHHHC
T ss_pred CCCCchHHHHHHHHHHhc--CCeEEEEEccccCCChhhHHHHHHHhcC
Confidence 334444433333334444 5889998655444444448999999996
No 4
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.81 E-value=85 Score=22.88 Aligned_cols=15 Identities=20% Similarity=0.632 Sum_probs=11.2
Q ss_pred hhHHHHHhhhcCCcccc
Q 027873 90 YFAEVWKEYSKGDSRYA 106 (217)
Q Consensus 90 ~~a~LWkeYa~~DsRY~ 106 (217)
-..|||.+|| |.|++
T Consensus 63 ~ID~LW~~yS--~G~FG 77 (148)
T d1z3xa2 63 TIDQLWLAFS--LGRFG 77 (148)
T ss_dssp HHHHHHHHTT--TTCCS
T ss_pred HHHHHHHHhc--CCccC
Confidence 4679999994 55765
No 5
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=6.65 E-value=87 Score=22.91 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=11.5
Q ss_pred hhHHHHHhhhcCCcccc
Q 027873 90 YFAEVWKEYSKGDSRYA 106 (217)
Q Consensus 90 ~~a~LWkeYa~~DsRY~ 106 (217)
-..|||.+|| |.|++
T Consensus 63 ~ID~LW~~yS--~GrFG 77 (151)
T d1y6ia2 63 TINALWWLHS--NGNFG 77 (151)
T ss_dssp HHHHHHHHTT--TTCSS
T ss_pred HHHHHHHHhc--CCccC
Confidence 4679999995 66765
No 6
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.51 E-value=1.3e+02 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCC
Q 027873 3 HPYSPSDLILPDFT 16 (217)
Q Consensus 3 hpy~P~~~~ip~y~ 16 (217)
||++|-++.-|-..
T Consensus 83 ~PFfP~~Lp~pilp 96 (256)
T d5csma_ 83 TPFFPDKIQKSFLP 96 (256)
T ss_dssp CCSCTTTCCCCSSC
T ss_pred CCCCcccccccCCC
Confidence 99999988766433
No 7
>d2p7ja1 d.110.6.2 (A:181-273) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=5.60 E-value=1.8e+02 Score=18.93 Aligned_cols=48 Identities=15% Similarity=0.434 Sum_probs=32.6
Q ss_pred eceeeeecc------ccc-CCCCc----hhHHHHHhhhcCCcccccCCCcEEEeehhhh
Q 027873 73 EGYWVFSPE------FYK-DESGN----YFAEVWKEYSKGDSRYASRHAAVLGIEGIAV 120 (217)
Q Consensus 73 EG~Fv~~~~------~~~-~~~~~----~~a~LWkeYa~~DsRY~~~D~~vv~~E~it~ 120 (217)
||+++..+. +|- ++++. -..++|++-+..++=....|....+-.+|..
T Consensus 16 ~Gy~L~~~~~~~~wgfm~~er~~~tf~~~~P~lW~~I~~~~~Gq~~~~~glftf~tI~l 74 (93)
T d2p7ja1 16 KGFYIASPDESRLYGDIIPERSQFNFSNMYPDIWPRVVSEQAGYSYSGEHLIAFSSIKF 74 (93)
T ss_dssp TSBEEECSCGGGBTTTTSTTCTTCBHHHHCTTTHHHHHTTCCEEEECSSEEEEEEEEEC
T ss_pred CCcEECCCCcccccccccCccccCChhhhChHHHHHHhcCCCceEEcCCCEEEEEEEEe
Confidence 799988752 332 22221 2338999998888888777877777776653
No 8
>d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]}
Probab=5.27 E-value=80 Score=24.03 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.2
Q ss_pred cCCcccccCCCcE
Q 027873 100 KGDSRYASRHAAV 112 (217)
Q Consensus 100 ~~DsRY~~~D~~v 112 (217)
+-|-||++.|+|+
T Consensus 16 ~~DlrYat~~NF~ 28 (202)
T d1r44a_ 16 RWDAKYATWDNFT 28 (202)
T ss_dssp EECCGGGSSCSTT
T ss_pred EEEeeeCcCCCcC
Confidence 4799999999985
No 9
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.25 E-value=1.9e+02 Score=19.87 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=18.8
Q ss_pred ceeeeecccccCCCCchhHHHHHhhhcCCc
Q 027873 74 GYWVFSPEFYKDESGNYFAEVWKEYSKGDS 103 (217)
Q Consensus 74 G~Fv~~~~~~~~~~~~~~a~LWkeYa~~Ds 103 (217)
+.|++-...++..+. -+++++.+|.-.|.
T Consensus 77 alflfvn~~~~~~~~-ti~~lY~~~kdeDG 105 (118)
T d3d32a1 77 ALFFFVNNVIPPTSA-TMGQLYQEHHEEDF 105 (118)
T ss_dssp CCEEEBTTBCCCTTC-BHHHHHHHHCCTTS
T ss_pred eEEEEECCcccCccc-cHHHHHHHhCCCCc
Confidence 356654445555444 68999999965565
No 10
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.37 E-value=2.5e+02 Score=19.13 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=19.6
Q ss_pred eceeeee-cccccCCCCchhHHHHHhhhcCC
Q 027873 73 EGYWVFS-PEFYKDESGNYFAEVWKEYSKGD 102 (217)
Q Consensus 73 EG~Fv~~-~~~~~~~~~~~~a~LWkeYa~~D 102 (217)
|+.|+|- ...++..+. -+++|+++|.-.|
T Consensus 76 ~alFlfvn~~~~p~~~~-~i~~lY~~~kdeD 105 (119)
T d2zjda1 76 QAFFLLVNGHSMVSVST-PISEVYESEKDED 105 (119)
T ss_dssp CCEEEEETTTEECCTTS-BHHHHHHHHCCTT
T ss_pred ceEEEEEcCCccCCchh-HHHHHHHHcCCCC
Confidence 5677764 345666555 7999999994444
Done!